RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7514
         (347 letters)



>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis
           [TaxId: 70863]}
          Length = 442

 Score = 27.6 bits (60), Expect = 2.7
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 1/61 (1%)

Query: 126 NKDTAKVVPLGMDHSSMD-HDMHSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMD 184
             D A  V +  D ++    + H+   HQ + +    +           CHD   H    
Sbjct: 163 YPDKATDVHMDSDGNNFQCQNCHTTEKHQISGNAMGVSPGGIDHIGCENCHDSAPHSNKK 222

Query: 185 H 185
            
Sbjct: 223 L 223


>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
           maltophilia [TaxId: 40324]}
          Length = 490

 Score = 25.9 bits (55), Expect = 8.3
 Identities = 30/275 (10%), Positives = 61/275 (22%), Gaps = 4/275 (1%)

Query: 1   MDHSSMDHDMHSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMDHMGMSMAFHWGY 60
              S+      + +    +    SS SA A    +A        +G      ++    G 
Sbjct: 139 SGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGL 198

Query: 61  NEVILFNQWKISTPSGLIASMVGIFFLAALYEGVKYYREYLFWKTYNDLHYRSIPAQQRI 120
              +         P        G    +                           A    
Sbjct: 199 KPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDY 258

Query: 121 SSVEENKDTAKVVPLGMDHSSMDHDMHSHHHHQEALSLESSNSAAASGNPMAPCHDMDSH 180
           ++  + +         +    + +        Q A  L  +     +        +  + 
Sbjct: 259 TARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAG----AVVVPVELPNQGAW 314

Query: 181 EGMDHMGMSMAFHWGYNEVILFNQWKISTPSGLIASMVGIFFLAALYEGVKYYREYLFWK 240
              +   +   F  G       ++  + + + LIA             G +   E     
Sbjct: 315 AEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATA 374

Query: 241 TYNDLHYRSIPAQQRISSVEENKDTAKVVPVCDVL 275
              D  Y    +  R  +  E  D A      D L
Sbjct: 375 GLADPAYIRARSDARRLAGPEGIDAALAAHQLDAL 409


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.132    0.419 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,328,899
Number of extensions: 58052
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 31
Length of query: 347
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,226,816
Effective search space: 320198976
Effective search space used: 320198976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)