BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7515
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
 pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
 pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
 pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
 pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
 pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
 pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
 pdb|1TL5|A Chain A, Solution Structure Of Apohah1
 pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1 And
           Hah1 Mediated By Cu(I)
 pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
           Chaperone (Monomer)
 pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
           Chaperone (Dimer)
 pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
           Chaperone (Dimer)
          Length = 68

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 38  HVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGK 97
           H F  +MTC GC+ A++R+L+++   G    +  LP++ V ++S    D LL  +KK+GK
Sbjct: 4   HEFSVDMTCGGCAEAVSRVLNKL---GGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60

Query: 98  TCSYIG 103
           T SY+G
Sbjct: 61  TVSYLG 66


>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
          Length = 68

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 38  HVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGK 97
           H F  +MTC GC+ A++R+L+++   G    +  LP++ V ++S    D LL  +KK+GK
Sbjct: 3   HEFSVDMTCGGCAEAVSRVLNKL---GGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 59

Query: 98  TCSYIG 103
           T SY+G
Sbjct: 60  TVSYLG 65


>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
 pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
 pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
 pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
          Metallochaperone, Atx1
 pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
          Length = 73

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 34 MAKV--HVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEA 91
          MA++  + F   MTC GCS A+ ++L ++ +  V  ++ SL  Q V V +TL  D +LE 
Sbjct: 1  MAEIKHYQFNVVMTCSGCSGAVNKVLTKL-EPDVSKIDISLEKQLVDVYTTLPYDFILEK 59

Query: 92 IKKSGK 97
          IKK+GK
Sbjct: 60 IKKTGK 65


>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
          Metallochaperone, Atx1
          Length = 73

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 36 KVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKS 95
          K + F   MTC GCS A+ ++L ++ +  V  ++ SL  Q V V +TL  D +LE IKK+
Sbjct: 5  KHYQFNVVMTCSGCSGAVNKVLTKL-EPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKT 63

Query: 96 GK 97
          GK
Sbjct: 64 GK 65


>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
          Protein In Vitro
 pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
          Protein In Living E. Coli Cells
          Length = 66

 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
          MTC+ C  A+T+ L ++   GVE VE SL      V+ T DP  L++A+++ G
Sbjct: 9  MTCNHCVMAVTKALKKVP--GVEKVEVSLEKGEALVEGTADPKALVQAVEEEG 59


>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
          Mercuric Reductase
 pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
          Domain Of Tn501 Mercuric Reductase
          Length = 69

 Score = 28.9 bits (63), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 38 HVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKST--LDPDVLLEAIKKS 95
          H+    MTCD C++ +   L+++   GV+S   S P  T ++       PD L  A+   
Sbjct: 3  HLKITGMTCDSCAAHVKEALEKV--PGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGL 60

Query: 96 G 96
          G
Sbjct: 61 G 61


>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
          Coppper(I) Atpase Pacs In Its Apo Form
          Length = 73

 Score = 28.5 bits (62), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 44 MTCDGCSSAITRILDRMKDKGVES--VECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
          M C  C+S+I R + ++   GV+S  V  +L    V       P +L +A++++G
Sbjct: 12 MRCAACASSIERAIAKV--PGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAG 64


>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
          Length = 71

 Score = 28.5 bits (62), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 44 MTCDGCSSAITRILDRMKDKGVES--VECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
          M C  C+S+I R + ++   GV+S  V  +L    V       P +L +A++++G
Sbjct: 12 MRCAACASSIERAIAKV--PGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAG 64


>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
          Length = 71

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDP 85
          M C  C+S+I R L+R+  KGV   E S+   T ++  T DP
Sbjct: 12 MRCAACASSIERALERL--KGV--AEASVTVATGRLTVTYDP 49


>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
          Length = 69

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 44 MTCDGCSSAITRILDRMKDKGVES--VECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
          M C  C+S+I R + ++   GV+S  V  +L    V       P +L +A++++G
Sbjct: 11 MDCTSCASSIERAIAKV--PGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAG 63


>pdb|4DZZ|A Chain A, Structure Of Parf-Adp, Crystal Form 1
 pdb|4DZZ|B Chain B, Structure Of Parf-Adp, Crystal Form 1
 pdb|4E03|A Chain A, Structure Of Parf-Adp Form 2
 pdb|4E03|B Chain B, Structure Of Parf-Adp Form 2
 pdb|4E07|A Chain A, Parf-Amppcp-C2221 Form
 pdb|4E07|B Chain B, Parf-Amppcp-C2221 Form
 pdb|4E09|A Chain A, Structure Of Parf-Amppcp, I422 Form
          Length = 206

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 58  DRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEA 91
           + +KD GV++   ++  + V VKS LD D + E+
Sbjct: 152 ESIKDTGVKAFRTAITQRQVYVKSILDGDSVFES 185


>pdb|2G40|A Chain A, Crystal Structure Of A Duf162 Family Protein (Dr_1909)
           From Deinococcus Radiodurans At 1.70 A Resolution
          Length = 224

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 28  LDNEPTMAKVHVFKAEMTCDGCSSAI----TRILDRMKDKGVESVECSLPD 74
           L +EP ++   + +A+    GC+ AI    T ILD   D+G  ++   +PD
Sbjct: 111 LRDEPPLSHAELDRADAVLTGCAVAISETGTIILDHRADQGRRALSL-IPD 160


>pdb|2IDX|A Chain A, Structure Of Human Atp:cobalamin Adenosyltransferase
          Bound To Atp.
 pdb|2IDX|B Chain B, Structure Of Human Atp:cobalamin Adenosyltransferase
          Bound To Atp.
 pdb|2IDX|C Chain C, Structure Of Human Atp:cobalamin Adenosyltransferase
          Bound To Atp
          Length = 196

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 38 HVFKAEMTCDGCSSAITRILDRMKDKG------VESVECSLPD 74
           VF+A  T D  SSAI   L+ + +KG      ++ ++C+L D
Sbjct: 27 QVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQD 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,318,316
Number of Sequences: 62578
Number of extensions: 113775
Number of successful extensions: 241
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 25
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)