RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7515
(106 letters)
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 83.0 bits (205), Expect = 1e-22
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 19 ASKSPEGTGLDNEPTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVK 78
+ S + N+ T+ + F +MTC C A+ + L + GV+ VE L DQ V
Sbjct: 3 SGSSGMASDSGNQGTLCTLE-FAVQMTCQSCVDAVRKSLQGVA--GVQDVEVHLEDQMVL 59
Query: 79 VKSTLDPDVLLEAIKKSGKTCSYIGEGS 106
V +TL + ++ +G+ G GS
Sbjct: 60 VHTTLPSQEVQALLEGTGRQAVLKGMGS 87
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury
coordination, metal transport; 1.02A {Saccharomyces
cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A
2ggp_A 3k7r_A
Length = 73
Score = 76.7 bits (189), Expect = 2e-20
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 36 KVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKS 95
K + F MTC GCS A+ ++L ++ + V ++ SL Q V V +TL D +LE IKK+
Sbjct: 5 KHYQFNVVMTCSGCSGAVNKVLTKL-EPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKT 63
Query: 96 GKTCS 100
GK
Sbjct: 64 GKEVR 68
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta,
cisplatin, platinum, chaperone, ION transport,
metal-binding, metal transport; HET: TCE; 1.60A {Homo
sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B
1fe0_A* 3iwx_A 3cjk_A
Length = 68
Score = 73.6 bits (181), Expect = 3e-19
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 34 MAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIK 93
M K H F +MTC GC+ A++R+L+++ GV+ + LP++ V ++S D LL +K
Sbjct: 1 MPK-HEFSVDMTCGGCAEAVSRVLNKLG--GVK-YDIDLPNKKVCIESEHSMDTLLATLK 56
Query: 94 KSGKTCSYIG 103
K+GKT SY+G
Sbjct: 57 KTGKTVSYLG 66
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Length = 222
Score = 70.1 bits (171), Expect = 2e-16
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 39 VFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKT 98
+ M C+ C + I L + G+ S+ + Q + V+S++ P ++ ++ GK
Sbjct: 9 TYAIPMHCENCVNDIKACLKNVP--GINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKD 66
Query: 99 CSYIGEGS 106
G G
Sbjct: 67 AIIRGAGK 74
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 66.3 bits (161), Expect = 9e-15
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 34 MAKVHVFKAE----MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLL 89
M ++A M C+ C + I L + G+ S+ + Q + V+S++ P ++
Sbjct: 1 MTTNDTYEATYAIPMHCENCVNDIKACLKNVP--GINSLNFDIEQQIMSVESSVAPSTII 58
Query: 90 EAIKKSGKTCSYIGEGS 106
++ GK G G
Sbjct: 59 NTLRNCGKDAIIRGAGK 75
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB:
2rog_A
Length = 66
Score = 51.5 bits (124), Expect = 2e-10
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
MTC+ C A+T+ L ++ GVE VE SL V+ T DP L++A+++ G
Sbjct: 9 MTCNHCVMAVTKALKKVP--GVEKVEVSLEKGEALVEGTADPKALVQAVEEEG 59
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain
ATU1203, ontario centre for ST proteomics, structural
genomics; NMR {Agrobacterium tumefaciens str}
Length = 85
Score = 51.4 bits (123), Expect = 3e-10
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 24 EGTGLDNEPTMAKVHVFKAE-MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKST 82
+G +N F E MTC C+ I +++ +V +TV V
Sbjct: 10 HSSGRENLYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTV--PGAAVHADPASRTVVVGGV 67
Query: 83 LDPDVLLEAIKKSG 96
D + E I +G
Sbjct: 68 SDAAHIAEIITAAG 81
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis,
chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB:
2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Length = 64
Score = 50.4 bits (121), Expect = 4e-10
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
+ C+ C+ A+T+ + +V+ L + V + S L + L AI +G
Sbjct: 10 IACEACAEAVTKAVQNED--AQATVQVDLTSKKVTITSALGEEQLRTAIASAG 60
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 47.1 bits (112), Expect = 2e-08
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 19 ASKSPEGTGLDNEPTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVK 78
A ++ E + K + + C I IL + GV+ +P +TV
Sbjct: 1 ALQNKEEEK-KKVKKLQKSYFDVLGICCTSEVPIIENILKSL--DGVKEYSVIVPSRTVI 57
Query: 79 VK---STLDPDVLLEAIKKSGKTCSYIGEGS 106
V + P + +A+ ++ + G
Sbjct: 58 VVHDSLLISPFQIAKALNEARLEANVRVNGE 88
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A
1p8g_A
Length = 69
Score = 45.4 bits (108), Expect = 4e-08
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 34 MAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLE 90
M + + M+C C A+ + + GV +V +L V V + + +
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGEL--DGVSAVHVNLEAGKVDVSFDADKVSVKDIAD 58
Query: 91 AIKKSG 96
AI+ G
Sbjct: 59 AIEDQG 64
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist
metal-binding, oxidoreductase; NMR {Pseudomonas
aeruginosa} PDB: 2kt3_A
Length = 69
Score = 44.2 bits (105), Expect = 1e-07
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQT--VKVKSTLDPDVLLEAIKKSG 96
MTCD C++ + L+++ GV+S S P T + + PD L A+ G
Sbjct: 9 MTCDSCAAHVKEALEKV--PGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLG 61
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like
fold, ATP- binding, ethylene signaling pathway,
hydrolase, ION transport; 1.70A {Arabidopsis thaliana}
Length = 74
Score = 44.2 bits (105), Expect = 1e-07
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 34 MAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLE 90
M K+ V MTC CS+++ L + GV +L V + + + + E
Sbjct: 1 MRKIQVGVTGMTCAACSNSVEAALMNV--NGVFKASVALLQNRADVVFDPNLVKEEDIKE 58
Query: 91 AIKKSG 96
I+ +G
Sbjct: 59 EIEDAG 64
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones,
hydrolase; NMR {Synechocystis SP}
Length = 71
Score = 44.2 bits (105), Expect = 1e-07
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 34 MAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLE 90
+ + M C C+S+I R L+R+ KGV ++ + V + + E
Sbjct: 2 LKTQQMQVGGMRCAACASSIERALERL--KGVAEASVTVATGRLTVTYDPKQVSEITIQE 59
Query: 91 AIKKSG 96
I G
Sbjct: 60 RIAALG 65
>2l3m_A Copper-ION-binding protein; structural genomics, center for
structural genomics of infec diseases, csgid, metal
binding protein; NMR {Bacillus anthracis}
Length = 71
Score = 44.2 bits (105), Expect = 1e-07
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 32 PTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVL 88
M ++ + M+C C +AI + + GVE V+ L + TV+V S + +
Sbjct: 2 NAMEQLTLQVEGMSCGHCVNAIESSVKEL--NGVEQVKVQLAEGTVEVTIDSSVVTLKDI 59
Query: 89 LEAIKKSG 96
+ I+ G
Sbjct: 60 VAVIEDQG 67
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility,
protein-protein interaction, alternative splicing,
ATP-binding, copper transport cytoplasm; NMR {Homo
sapiens}
Length = 202
Score = 46.2 bits (109), Expect = 2e-07
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSGKTCS 100
MTC C +I ++ ++ +GV+ + SL + T V + + P+ L AI+ G S
Sbjct: 131 MTCASCVHSIEGMISQL--EGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEAS 188
Query: 101 YIGEGS 106
+ E
Sbjct: 189 VVSESC 194
Score = 36.9 bits (85), Expect = 4e-04
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 32 PTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVL 88
+ + + M C C I + ++ GV+S++ SL ++T +VK S P L
Sbjct: 17 SHVVTLQLRIDGMHCKSCVLNIEENIGQL--LGVQSIQVSLENKTAQVKYDPSCTSPVAL 74
Query: 89 LEAIKKSGK 97
AI+
Sbjct: 75 QRAIEALPP 83
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Length = 90
Score = 44.4 bits (105), Expect = 2e-07
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
M C C S I L + + V S+ SL +++ V S++ P+ L +AI+
Sbjct: 12 MHCKSCVSNIESTLSAL--QYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVS 65
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR
{Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Length = 79
Score = 43.5 bits (103), Expect = 3e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 28 LDNEPTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLD 84
+D + V + MTC+ C I + + ++ GV ++ SL ++ +
Sbjct: 1 MDPSMGVNSVTISVEGMTCNSCVWTIEQQIGKV--NGVHHIKVSLEEKNATIIYDPKLQT 58
Query: 85 PDVLLEAIKKSG 96
P L EAI G
Sbjct: 59 PKTLQEAIDDMG 70
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene
regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Length = 68
Score = 42.7 bits (101), Expect = 4e-07
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
M+C+ C + I + R+ GV+ V+ L + VK + + + +AI + G
Sbjct: 9 MSCNHCVARIEEAVGRI--SGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 42.6 bits (101), Expect = 5e-07
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK--STLDPDVLLEAIKKSG 96
MTC C++ I L + KGV + SL +V + + D + E I+ G
Sbjct: 11 MTCSACTNTINTQLRAL--KGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCG 63
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal
homeostasis, chaperone, ION transport, metal- binding,
alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Length = 75
Score = 42.7 bits (101), Expect = 5e-07
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 34 MAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLE 90
+ V + MTC+ C I + + ++ GV ++ SL ++ + P L E
Sbjct: 1 VNSVTISVEGMTCNSCVWTIEQQIGKV--NGVHHIKVSLEEKNATIIYDPKLQTPKTLQE 58
Query: 91 AIKKSG 96
AI G
Sbjct: 59 AIDDMG 64
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain,
hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB:
2aw0_A
Length = 72
Score = 42.6 bits (101), Expect = 6e-07
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC+ C +I ++ + GV+S+ SL + V+ P+ L AI+ G
Sbjct: 12 MTCNSCVQSIEGVISKK--PGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMG 65
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology,
protein structure initiative, joint for structural
genomics, JCSG; NMR {Thermotoga maritima}
Length = 67
Score = 42.1 bits (99), Expect = 7e-07
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 38 HVFKAE-MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
+V ++C+ C I++ L+ + GV++ E S+ ++ V V++ + D +L+ +++
Sbjct: 3 YVLYVPDISCNHCKMRISKALEEL---GVKNYEVSVEEKKVVVETE-NLDSVLKKLEEID 58
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1
PDB: 2rml_A
Length = 151
Score = 43.6 bits (103), Expect = 9e-07
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 31 EPTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDV 87
K MTC C++ I + L+++ +GV + + +TV V+
Sbjct: 70 HVVTEKAEFDIEGMTCAACANRIEKRLNKI--EGVANAPVNFALETVTVEYNPKEASVSD 127
Query: 88 LLEAIKKSG 96
L EA+ K G
Sbjct: 128 LKEAVDKLG 136
Score = 42.4 bits (100), Expect = 3e-06
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C++ I + L RM GV +L +TV V + + E I+K G
Sbjct: 15 MTCAACAARIEKGLKRM--PGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLG 68
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, Met transport; NMR {Helicobacter
pylori}
Length = 66
Score = 41.8 bits (99), Expect = 1e-06
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKST--LDPDVLLEAIKKSG 96
+TC+ C I + + + +GV ++ S+ ++V V+ D++ EA+ +G
Sbjct: 10 ITCNHCVDKIEKFVGEI--EGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAG 62
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like
fold, structural genomics, structural proteomics in
europe, spine, hydrolase; NMR {Homo sapiens}
Length = 149
Score = 43.5 bits (103), Expect = 1e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C I L R G+ +L VK + P +++ I++ G
Sbjct: 89 MTCASCVHNIESKLTRT--NGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIG 142
Score = 42.3 bits (100), Expect = 2e-06
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C S I R L + GV SV +L ++K + P + + I+ G
Sbjct: 13 MTCASCVSNIERNLQKE--AGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLG 66
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta structure, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1y3k_A
Length = 77
Score = 41.9 bits (99), Expect = 1e-06
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C + I R L R +G+ S+ +L +V+ + + P ++ E I++ G
Sbjct: 12 MTCASCVANIERNLRRE--EGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELG 65
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo
sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Length = 84
Score = 41.6 bits (98), Expect = 1e-06
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C+S I + ++ +GV+ ++ SL +Q + + + + + I+ G
Sbjct: 18 MTCHSCTSTIEGKIGKL--QGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMG 71
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase,
Cu(I)-binding, trafficking; 1.80A {Synechocystis SP}
PDB: 2gcf_A
Length = 71
Score = 41.2 bits (97), Expect = 2e-06
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 34 MAKVHVFKAE-MTCDGCSSAITRILDRMKDKGVESVECSLPDQT--VKVKSTLDPDVLLE 90
MA+ + E M C C+S+I R + ++ GV+S + + + V P +L +
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKV--PGVQSCQVNFALEQAVVSYHGETTPQILTD 58
Query: 91 AIKKSG 96
A++++G
Sbjct: 59 AVERAG 64
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal
binding protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
1afj_A 2hqi_A
Length = 72
Score = 40.7 bits (96), Expect = 2e-06
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C + + + ++ +GV V+ + + V + L +A +G
Sbjct: 12 MTCSACPITVKKAISKV--EGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAG 65
>3fry_A Probable copper-exporting P-type ATPase A; transport protein,
metal binding domain, domain SWAP, ATP-BI cell
membrane, copper transport; HET: CIT; 2.00A
{Archaeoglobus fulgidus}
Length = 73
Score = 40.1 bits (94), Expect = 5e-06
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSG 96
++C C + + + L+ G + + L + V + D D ++A++ +G
Sbjct: 14 LSCHHCVARVKKALEEA---GAKVEKVDLNEAVVAG-NKEDVDKYIKAVEAAG 62
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 41.7 bits (99), Expect = 9e-06
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C +I + + +GVE V +L +T ++ +D + + I+ G
Sbjct: 11 MTCAMCVKSIETAVGSL--EGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLG 64
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Length = 80
Score = 38.8 bits (91), Expect = 2e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C++ I + L+++ +GV + + +TV V+ L EA+ K G
Sbjct: 12 MTCAACANRIEKRLNKI--EGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLG 65
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein
interaction, copper(I), metal homeostasis, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1yjt_A 1yju_A 1yjv_A
Length = 75
Score = 38.5 bits (90), Expect = 2e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C I L + +G+ +L +K + P ++ I+ G
Sbjct: 13 MTCASCVHKIESSLTKH--RGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLG 66
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
fold, hydrolase; NMR {Bacillus subtilis} SCOP:
d.58.17.1 PDB: 1oq3_A 1oq6_A
Length = 76
Score = 38.1 bits (89), Expect = 3e-05
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C++ I + L RM GV +L +TV V + + E I+K G
Sbjct: 15 MTCAACAARIEKGLKRM--PGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLG 68
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, struc genomics,
hydrolase, membrane protein; NMR {Synechocystis SP}
PDB: 2ofh_X
Length = 111
Score = 37.5 bits (87), Expect = 9e-05
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
M C C I L+R+ KGV ++ + V + + E I G
Sbjct: 17 MDCTSCKLKIEGSLERL--KGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 70
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, metal binding protein,
hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Length = 71
Score = 35.5 bits (82), Expect = 3e-04
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 34 MAKVHVFKAE-MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAI 92
MA+ V++ + ++C C++ R + + +GV + + V + +A
Sbjct: 1 MAEKTVYRVDGLSCTNCAAKFERNVKEI--EGVTEAIVNFGASKITVTGEASIQQVEQAG 58
Query: 93 KKSG 96
Sbjct: 59 AFEH 62
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha-
beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1
PDB: 1mwz_A
Length = 73
Score = 32.0 bits (73), Expect = 0.006
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDV---LLEAIKKSG 96
M C C+ + + ++ GV V+ + + V D D+ + A++K+G
Sbjct: 12 MDCAACARKVENAVRQL--AGVNQVQVLFATEKLVV--DADNDIRAQVESALQKAG 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.096
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 51 SAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDV--LLEAIK-----KSGKTCSYI 102
S R+ + K E V+ V+ L + L+ IK S T YI
Sbjct: 62 SGTLRLFWTLLSKQEEMVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Score = 25.2 bits (54), Expect = 5.6
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 73 PDQTVKVKSTL-----DPDVLLEAIKKSGKTC 99
+K++ L +VL++ + SGKT
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
>1jgs_A Multiple antibiotic resistance protein MARR; transcription
regulation, DNA-binding, repressor, transcription; HET:
SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Length = 138
Score = 28.1 bits (63), Expect = 0.34
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 50 SSAITRILDRMKDKG 64
A+TR+LDR+ KG
Sbjct: 62 LGALTRMLDRLVCKG 76
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG,
helix-turn-helix; 2.20A {Planctomyces limnophilus}
Length = 168
Score = 28.2 bits (63), Expect = 0.34
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 50 SSAITRILDRMKDKG 64
+ ITR++DR+ D+G
Sbjct: 76 APDITRLIDRLDDRG 90
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH
MOT protein structure initiative, midwest center for
structural genomics; 1.55A {Archaeoglobus fulgidus}
SCOP: a.4.5.50
Length = 109
Score = 27.6 bits (61), Expect = 0.44
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 51 SAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKS 95
+ L + +G E + S P+ +L+ K S
Sbjct: 49 RFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSS 93
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix;
1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A
3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Length = 146
Score = 27.7 bits (62), Expect = 0.49
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 50 SSAITRILDRMKDKG 64
SAIT +D++++ G
Sbjct: 64 QSAITASVDKLEEMG 78
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator
family, PSI, protein structure initiative; HET: MSE;
2.25A {Bacillus subtilis} SCOP: a.4.5.28
Length = 155
Score = 27.3 bits (61), Expect = 0.80
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
SA+T + DR++ K
Sbjct: 65 PSAVTLMADRLEQKN 79
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR
family, bacterial transcription factor, DNA bindi
protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB:
1z9c_A*
Length = 147
Score = 26.9 bits (60), Expect = 0.85
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
S +T +L RM+ +G
Sbjct: 68 SGTLTPMLKRMEQQG 82
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1,
putative MARR-like transcription regulator, MAR
structural genomics; 2.38A {Bacillus cereus}
Length = 139
Score = 26.9 bits (60), Expect = 0.99
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
S +T ++ RMK G
Sbjct: 61 PSNMTTMIQRMKRDG 75
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix,
cysteine disulfide, MARR-family transcript regulator,
DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB:
3hse_A 3hrm_A
Length = 140
Score = 26.9 bits (60), Expect = 1.1
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
S +T +L +++ K
Sbjct: 64 SGTLTPLLKKLEKKD 78
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix,
structura genomics, PSI-2, protein structure
initiative; 2.69A {Silicibacter pomeroyi dss-3}
Length = 155
Score = 26.6 bits (59), Expect = 1.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 50 SSAITRILDRMKDKG 64
S +TRI+D+M +G
Sbjct: 71 QSRMTRIVDQMDARG 85
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center
for structural genomics, PSI, protein structure
initiative, MARR; 1.80A {Thermotoga maritima} SCOP:
a.4.5.28
Length = 145
Score = 26.5 bits (59), Expect = 1.4
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
S +T ++ R++ G
Sbjct: 61 KSTVTGLVKRLEADG 75
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy
structural genomics, PSI-2, protein structure
initiative; 1.95A {Silicibacter pomeroyi dss-3}
Length = 162
Score = 26.6 bits (59), Expect = 1.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
S ++R LD ++ G
Sbjct: 80 QSTLSRALDGLQADG 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 1.4
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 52 AITRILDRMKDKGVESVEC--SLPDQTVK 78
+T +L+ +K + ++ +E SL + V+
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 56 ILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIK 93
+L+ + VE + S + LD L++AI
Sbjct: 20 LLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAIS 57
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural
genomic protein structure initiative; 2.10A
{Pseudomonas aeruginosa} SCOP: a.4.5.28
Length = 142
Score = 26.1 bits (58), Expect = 1.5
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
++T +L R++ G
Sbjct: 64 RPSMTGVLARLERDG 78
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural
genomics, MI center for structural genomics, MCSG,
unknown function; 1.78A {Listeria innocua}
Length = 143
Score = 26.1 bits (58), Expect = 1.6
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 50 SSAITRILDRMKDKG 64
+ + RI+D + K
Sbjct: 65 TPTVNRIVDVLLRKE 79
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S
metabolism, 2-hydroxyacid dehydrogenases; HET: NAD;
1.70A {Homo sapiens}
Length = 335
Score = 26.4 bits (59), Expect = 1.7
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 19/77 (24%)
Query: 18 GASKSPEGTGLDNEPTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTV 77
G E + + KV + D +IL +D G++ V
Sbjct: 10 GVDLGTENLYFQSMANLRKVLI------SDSLDPCCRKIL---QDGGLQ----------V 50
Query: 78 KVKSTLDPDVLLEAIKK 94
K L + L+ ++
Sbjct: 51 VEKQNLSKEELIAELQD 67
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047,
winged-helix binding motif, structural genomics, PSI-2;
2.30A {Geobacillus stearothermophilus}
Length = 150
Score = 26.2 bits (58), Expect = 1.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
S T ++DRM+ G
Sbjct: 70 CSTTTDLVDRMERNG 84
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; 2.20A {Silicibacter pomeroyi}
Length = 161
Score = 26.2 bits (58), Expect = 1.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
S +R +D++ D+G
Sbjct: 81 QSTTSRTVDQLVDEG 95
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding
protein, DNA-binding, transcription regulation; 1.90A
{Sulfolobus solfataricus}
Length = 144
Score = 26.3 bits (58), Expect = 1.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 50 SSAITRILDRMKDKG 64
SAIT +D+++ KG
Sbjct: 64 QSAITAAVDKLEAKG 78
>2fxa_A Protease production regulatory protein HPR; protease porduction,
regulation, STR genomics, PSI, protein structure
initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis}
SCOP: a.4.5.28
Length = 207
Score = 26.1 bits (57), Expect = 2.0
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 50 SSAITRILDRMKDKG 64
S +++++G
Sbjct: 76 VSTAFNFSKKLEERG 90
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix
motif, DNA-binding, transcription, transcription
regulation; 2.40A {Staphylococcus aureus}
Length = 139
Score = 26.1 bits (58), Expect = 2.0
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 50 SSAITRILDRMKDKG 64
++ +L ++ K
Sbjct: 61 GPTVSNLLRNLERKK 75
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Length = 140
Score = 25.7 bits (57), Expect = 2.2
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
++ I +++R+ +G
Sbjct: 66 AATIKGVVERLDKRG 80
>2eth_A Transcriptional regulator, putative, MAR family; MARR family,
structural genomics, joint center for structura
genomics, JCSG; 2.30A {Thermotoga maritima} SCOP:
a.4.5.28
Length = 154
Score = 25.8 bits (57), Expect = 2.4
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
S +T ++D ++ +G
Sbjct: 72 KSNVTNVVDSLEKRG 86
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein
structure initiati structural genomics; HET: MSE; 2.00A
{Acinetobacter SP}
Length = 148
Score = 25.8 bits (57), Expect = 2.5
Identities = 3/15 (20%), Positives = 11/15 (73%)
Query: 50 SSAITRILDRMKDKG 64
+A++R + ++++K
Sbjct: 68 KAAVSRTVKKLEEKK 82
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic
resistance protein (MA structural genomics, PSI-2,
protein structure initiative; HET: MSE; 2.04A
{Oenococcus oeni} SCOP: a.4.5.28
Length = 141
Score = 25.8 bits (57), Expect = 2.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
SS T +L RM+ K
Sbjct: 64 SSTATVLLQRMEIKK 78
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics
resistance repressor, XCC structural genomics, X-RAY
diffraction; 1.80A {Xanthomonas campestris}
Length = 162
Score = 25.8 bits (57), Expect = 2.7
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
A++R + R+ ++G
Sbjct: 77 KVAVSRAVARLLERG 91
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug
resistance regulator, virulence determinant,
transcriptional factors; 2.8A {Staphylococcus aureus}
SCOP: a.4.5.28
Length = 142
Score = 25.7 bits (57), Expect = 2.7
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 50 SSAITRILDRMKDKG 64
+ ++ +L RM+
Sbjct: 65 TGTVSPLLKRMEQVD 79
>3boq_A Transcriptional regulator, MARR family; MARR famil structural
genomics, PSI-2, protein structure initiative; 2.39A
{Silicibacter pomeroyi dss-3}
Length = 160
Score = 25.4 bits (56), Expect = 3.1
Identities = 3/22 (13%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 50 SSAITRILDRMKDKG-VESVEC 70
+ ++ +++R+ G V
Sbjct: 76 NGNVSGLVNRLIKDGMVVKAMS 97
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A
{Xanthomonas campestris} PDB: 2pfb_A
Length = 153
Score = 25.4 bits (56), Expect = 3.2
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
S+ +T +L R++ G
Sbjct: 75 SATLTPLLKRLQAAG 89
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription
factor, structur genomics, oxford protein production
facility; 2.10A {Neisseria meningitidis serogroup B}
Length = 145
Score = 25.5 bits (56), Expect = 3.3
Identities = 1/15 (6%), Positives = 6/15 (40%)
Query: 50 SSAITRILDRMKDKG 64
++ + + +G
Sbjct: 59 KQTVSGVCKTLAGQG 73
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance
repressor, structura genomics, joint center for
structural genomics, JCSG; 2.20A {Streptococcus suis}
Length = 142
Score = 25.0 bits (55), Expect = 4.0
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 50 SSAITRILDRMKDKG 64
+A+TR L +++ G
Sbjct: 59 RAAVTRHLKLLEESG 73
>3ech_A MEXR, multidrug resistance operon repressor; winged helix,
helix-turn-helix, protein-peptide complex; 1.80A
{Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Length = 142
Score = 25.1 bits (55), Expect = 4.4
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 50 SSAITRILDRMKDKG 64
+ ITR + ++ +
Sbjct: 65 KALITRKIRELEGRN 79
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1
d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Length = 529
Score = 25.4 bits (56), Expect = 4.5
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 56 ILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIK 93
I D++ V ++ V+ D D LL A+
Sbjct: 9 IADKLAPSTVAALG---DQVEVRWVDGPDRDKLLAAVP 43
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance,
biofilm, transcription regulation, binding,
transcription regulator; 2.30A {Staphylococcus
epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A*
3kp6_A
Length = 151
Score = 25.2 bits (55), Expect = 4.5
Identities = 3/25 (12%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 51 SAITRILDRMKDKG-VESVECSLPD 74
+A++R + ++ + V+ +
Sbjct: 66 AAVSRRVKKLLNAELVKLEKPDSNT 90
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
helical reconstruction, structural protein; 4.00A
{Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Length = 494
Score = 25.4 bits (55), Expect = 4.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 45 TCDGCSSAITRILDRMKDKGVES 67
T +G + I L R+++ V+S
Sbjct: 76 TTEGALNEINNNLQRVRELAVQS 98
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix;
2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Length = 181
Score = 25.1 bits (55), Expect = 4.7
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 50 SSAITRILDRMKDKG 64
+ + + R+ +KG
Sbjct: 100 GPSTSNRIVRLLEKG 114
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A*
2p9e_A* 2pa3_A* 2p9g_A*
Length = 404
Score = 25.3 bits (56), Expect = 4.9
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 56 ILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIK 93
+++ + K +ES+ + K LD + L E+I+
Sbjct: 9 LVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIR 46
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta}
SCOP: b.60.1.2
Length = 132
Score = 24.9 bits (54), Expect = 5.1
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 18/107 (16%)
Query: 5 DSKQWDNYLKARPGASKSPEGTGLDNEP-TMAKVHVFKAEMTCDGCSSAITRILDRMKDK 63
+ +D +LK+ GL ++ +M +G S + T K
Sbjct: 12 KQENFDGFLKS----------AGLSDDKIQALVSDKPTQKMEANGDSYSNT-STGGGGAK 60
Query: 64 ------GVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKTCSYIGE 104
GVE + +VK T+D +V+ +K ++ E
Sbjct: 61 TVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTHVVKGDAGVATFKKE 107
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, NIF3 superfamily, unknown
function; 2.00A {Sphaerobacter thermophilus}
Length = 278
Score = 25.1 bits (54), Expect = 5.2
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECS 71
+ D I R + ++++GVE V S
Sbjct: 251 IASD--LVGINRYVQALEERGVEVVRMS 276
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Clostridium
acetobutylicum}
Length = 148
Score = 25.0 bits (55), Expect = 5.4
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 51 SAITRILDRMKDKG 64
++IT +L ++ KG
Sbjct: 72 ASITSMLQGLEKKG 85
>3ktb_A Arsenical resistance operon trans-acting represso;
alpha-beta-alpha sandwich, helix-turn-helix, structural
GENO PSI-2; 2.10A {Bacteroides vulgatus}
Length = 106
Score = 24.6 bits (53), Expect = 5.5
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 34 MAKVHVFKAEMTCD--GCSSA-------ITRILDRMKDKGVESVECSLPDQ 75
M K+ +F M C C + I +++ +K +G+ +L D+
Sbjct: 4 MKKIEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRDE 54
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta,
structural genomics, PSI-2; 2.30A {Mycobacterium
tuberculosis}
Length = 168
Score = 24.8 bits (54), Expect = 5.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 50 SSAITRILDRMKDKG 64
SA R++DR+
Sbjct: 73 PSATGRMVDRLVGAE 87
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 24.8 bits (55), Expect = 5.6
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 18/58 (31%)
Query: 57 LDRMKDKGVESVECSLPDQTVKV-----------KSTLDPDVLLEAIKKSGKTCSYIG 103
LD+ + LP ++ K LD DV LEAI + Y G
Sbjct: 169 LDKT-------LFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 219
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 24.8 bits (55), Expect = 5.8
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 19/61 (31%)
Query: 33 TMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAI 92
KV V ++L KD G+E V + D D L+E +
Sbjct: 2 KRMKVLV------AAPLHEKAIQVL---KDAGLE----------VIYEEYPDEDRLVELV 42
Query: 93 K 93
K
Sbjct: 43 K 43
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription
factor, winged helix motif, DNA-binding; 1.40A
{Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Length = 138
Score = 24.5 bits (54), Expect = 5.8
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 51 SAITRILDRMKDKG 64
I R L R+++ G
Sbjct: 58 GTIARTLRRLEESG 71
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription
regulator, activator, DNA-binding, repressor; HET: SAL;
2.30A {Salmonella typhimurium} SCOP: a.4.5.28 PDB:
3qpt_A* 3q5f_A*
Length = 166
Score = 24.7 bits (54), Expect = 5.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 50 SSAITRILDRMKDKG 64
++ R LD+++DKG
Sbjct: 82 QPSLVRTLDQLEDKG 96
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium
difficile}
Length = 189
Score = 24.8 bits (54), Expect = 5.9
Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 50 SSAITRILDRMKDKG-VESVEC 70
I R++ ++ G V+ +
Sbjct: 71 KQNINRLVANLEKNGYVDVIPS 92
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator,
APC5857, structural genomics, protein structure
initiative; 1.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.28
Length = 146
Score = 24.6 bits (54), Expect = 7.0
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 50 SSAITRILDRMKDKG 64
+ R+LD ++ +G
Sbjct: 66 GPTLARLLDGLESQG 80
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 24.5 bits (54), Expect = 7.8
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 40 FKAEMTCDGCSSAITRILDRMKDKGVESVECSLP 73
F ++ A+ + + G E ++P
Sbjct: 286 FGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIP 319
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional
regulator, transcription; 2.00A {Streptococcus
pneumoniae}
Length = 146
Score = 24.4 bits (53), Expect = 8.3
Identities = 3/14 (21%), Positives = 9/14 (64%)
Query: 51 SAITRILDRMKDKG 64
+A+T+ + + +G
Sbjct: 66 AAVTKAIKSLVKEG 79
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple
antibiotic-resistance repressor (MARR) structural
genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Length = 154
Score = 24.4 bits (53), Expect = 8.4
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 50 SSAITRILDRMKDKG 64
S+ +D + G
Sbjct: 69 GSSAAANVDGLISLG 83
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin
synthase; lyase/transferase, folate biosynthesis,
pyrophosphokinase, lyase; 2.9A {Streptococcus
pneumoniae}
Length = 270
Score = 24.5 bits (54), Expect = 8.4
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 15/53 (28%)
Query: 57 LDRMKDKGVESVECS---------LPDQT------VKVKSTLDPDVLLEAIKK 94
+D+++ +G+ ++ S +Q V+V++ L LLE +
Sbjct: 141 IDKLRARGIHILKESSVLATEPWGGVEQDSFANQVVEVETWLPAQDLLETLLA 193
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein,
structural genomics, PSI, protein structure initiative;
1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Length = 144
Score = 24.2 bits (53), Expect = 9.8
Identities = 3/14 (21%), Positives = 9/14 (64%)
Query: 51 SAITRILDRMKDKG 64
+ R + R++++G
Sbjct: 58 TTAARAIKRLEEQG 71
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 24.2 bits (53), Expect = 9.9
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 84 DPDVLLEAIKKSG----KTCSYIG 103
P+ +L A+ K +IG
Sbjct: 161 SPEPVLAALTNINIEPSKEVFFIG 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.379
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,590,252
Number of extensions: 78156
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 117
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)