RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7515
(106 letters)
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 72
Score = 64.0 bits (156), Expect = 8e-16
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 36 KVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKS 95
K + F MTC GCS A+ ++L ++ + V ++ SL Q V V +TL D +LE IKK+
Sbjct: 4 KHYQFNVVMTCSGCSGAVNKVLTKL-EPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKT 62
Query: 96 GKT 98
GK
Sbjct: 63 GKE 65
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human
(Homo sapiens), HAH1 [TaxId: 9606]}
Length = 66
Score = 61.8 bits (150), Expect = 5e-15
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 38 HVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGK 97
H F +MTC GC+ A++R+L+++ + LP++ V ++S D LL +KK+GK
Sbjct: 3 HEFSVDMTCGGCAEAVSRVLNKLG---GVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 59
Query: 98 TCSYIG 103
T SY+G
Sbjct: 60 TVSYLG 65
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide
dismutase, N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 57.9 bits (140), Expect = 2e-13
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 39 VFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKT 98
+ M C+ C + I L + + S+ + Q + V+S++ P ++ ++ GK
Sbjct: 9 TYAIPMHCENCVNDIKACLKNVPG--INSLNFDIEQQIMSVESSVAPSTIINTLRNCGKD 66
Query: 99 CSYIG 103
G
Sbjct: 67 AIIRG 71
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 49.0 bits (117), Expect = 7e-10
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 35 AKVHVFKAE-MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK--STLDPDVLLEA 91
A+ + MTC C++ I L KGV + SL +V + + D + E
Sbjct: 1 AREVILAVHGMTCSACTNTINTQL--RALKGVTKCDISLVTNECQVTYDNEVTADSIKEI 58
Query: 92 IKKSGKTCSYIGE 104
I+ G C + +
Sbjct: 59 IEDCGFDCEILRD 71
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc
6803, Scatx1 [TaxId: 1148]}
Length = 64
Score = 47.6 bits (113), Expect = 2e-09
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKT 98
+ C+ C+ A+T+ + +V+ L + V + S L + L AI +G
Sbjct: 10 IACEACAEAVTKAVQNED--AQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 62
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP
{Ralstonia metallidurans CH34 [TaxId: 266264]}
Length = 72
Score = 47.0 bits (112), Expect = 4e-09
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C + + + K +GV V+ + + V + L +A +G
Sbjct: 12 MTCSACPITVKKAI--SKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAG 65
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 46.7 bits (111), Expect = 5e-09
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 34 MAKVHVFKAE-MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLL 89
+ + V + MTC+ C +I ++ K GV+S+ SL + V+ P+ L
Sbjct: 1 LTQETVINIDGMTCNSCVQSIEGVI--SKKPGVKSIRVSLANSNGTVEYDPLLTSPETLR 58
Query: 90 EAIKKSGKTCS 100
AI+ G +
Sbjct: 59 GAIEDMGFDAT 69
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 46.0 bits (109), Expect = 1e-08
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 28 LDNEPTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLD 84
+D + V + MTC+ C I + + K GV ++ SL ++ +
Sbjct: 1 MDPSMGVNSVTISVEGMTCNSCVWTIEQQI--GKVNGVHHIKVSLEEKNATIIYDPKLQT 58
Query: 85 PDVLLEAIKKSG 96
P L EAI G
Sbjct: 59 PKTLQEAIDDMG 70
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type
ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Length = 72
Score = 45.9 bits (109), Expect = 1e-08
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSG 96
MTC C++ I + L + GV +L +TV V + + E I+K G
Sbjct: 15 MTCAACAARIEKGL--KRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLG 68
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId:
1354]}
Length = 68
Score = 45.2 bits (107), Expect = 2e-08
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSGKTCS 100
M+C+ C + I + + GV+ V+ L + VK + + + +AI + G
Sbjct: 9 MSCNHCVARIEEAV--GRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAE 66
Query: 101 YI 102
I
Sbjct: 67 VI 68
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis,
CopZ [TaxId: 1423]}
Length = 69
Score = 45.2 bits (107), Expect = 2e-08
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 34 MAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLE 90
M + + M+C C A+ + + GV +V +L V V + + +
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSV--GELDGVSAVHVNLEAGKVDVSFDADKVSVKDIAD 58
Query: 91 AIKKSGKTCS 100
AI+ G +
Sbjct: 59 AIEDQGYDVA 68
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type
ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Length = 79
Score = 45.3 bits (107), Expect = 2e-08
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK---STLDPDVLLEAIKKSGKTCS 100
MTC C++ I + L K +GV + + +TV V+ L EA+ K G
Sbjct: 11 MTCAACANRIEKRL--NKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLK 68
Query: 101 YIGE 104
GE
Sbjct: 69 LKGE 72
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 73
Score = 43.3 bits (102), Expect = 1e-07
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVK-STLDPDVLLEAIKKSG 96
M C C+ + + + GV V+ + + V + A++K+G
Sbjct: 12 MDCAACARKVENAV--RQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAG 63
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 39.2 bits (91), Expect = 5e-06
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 44 MTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKV---KSTLDPDVLLEAIKKSGKTCS 100
MTC C+S I + K +GV+ ++ SL +Q + + + + + I+ G
Sbjct: 18 MTCHSCTSTIEGKI--GKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAF 75
Query: 101 YIGE 104
+
Sbjct: 76 VKKQ 79
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 109
Score = 29.0 bits (64), Expect = 0.052
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 39 VFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDPDVLLEAIKKS 95
V + D + + L + +G E + S P+ +L+ K S
Sbjct: 37 VSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSS 93
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 100
Score = 27.6 bits (61), Expect = 0.17
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 56 ILDRMKDKGVESVECSLPDQTVKVKS-TLDPDVLLEAIKKSGKTCSY 101
+ KD+ VE V+ D ++ T+ +++ G
Sbjct: 5 VFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDG 51
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 100
Score = 27.2 bits (60), Expect = 0.19
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 56 ILDRMKDKGVESVECSLPDQTVKVKS-TLDPDVLLEAIKKSGKTCSYI 102
+L + + V+ V+ D K + T+ + + GK
Sbjct: 5 VLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGS 52
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId:
1423]}
Length = 154
Score = 26.9 bits (59), Expect = 0.38
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 36 KVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLD 84
V V +T + AI R + +KGV+ ++ + + + +
Sbjct: 108 GVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAI--EMANLNRSFE 154
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 155
Score = 26.5 bits (58), Expect = 0.50
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 36 KVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSL 72
V +TCD AI R + +KG ES ++
Sbjct: 108 GVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAI 144
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId:
63363]}
Length = 154
Score = 26.5 bits (58), Expect = 0.60
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 36 KVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSL 72
+ + +T D AI R + +KG E+ ++
Sbjct: 108 RKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAI 144
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
[TaxId: 90371]}
Length = 395
Score = 26.2 bits (56), Expect = 0.75
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 45 TCDGCSSAITRILDRMKDKGVES 67
T +G + I L R+++ V+S
Sbjct: 21 TTEGALNEINNNLQRVRELAVQS 43
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 282
Score = 25.9 bits (55), Expect = 1.1
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 32 PTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVECSLPDQTVKVKSTLDP 85
P + +H K + +A +LDR+ +K E + + ++ +S D
Sbjct: 226 PALTTIHQPKDSL----GETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG 275
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 24.9 bits (54), Expect = 1.8
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 22 SPEGTGLDN--EPTMAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVEC 70
SPE L + T AK+ V GC A + R+K +G+E +
Sbjct: 1 SPEDKELLEYLQQTKAKITVV-------GCGGAGNNTITRLKMEGIEGAKT 44
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 151
Score = 24.8 bits (53), Expect = 2.2
Identities = 6/58 (10%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 46 CDGCSSAITRILDRMKDKG-VESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKTCSYI 102
++ L ++++ G V V + + A +K
Sbjct: 51 LKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTY 108
>d1o1va_ b.60.1.2 (A:) Ileal lipid-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 127
Score = 24.4 bits (53), Expect = 2.5
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 6 SKQWDNYLKARPGASKSPEGTGLDNEPTMAKVHVFKAEMTCDGCSSAITRILDRMKDK-- 63
K +D ++K G S + + E+ DG ++
Sbjct: 11 EKNYDEFMKLL-GISSDVIEKARNFKIVT--------EVQQDGQDFTWSQHYSGGHTMTN 61
Query: 64 ----GVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKT 98
G ES ++ +T K ++ L+ +T
Sbjct: 62 KFTVGKESNIQTMGGKTFKATVQMEGGKLVVNFPNYHQT 100
>d2hnxa1 b.60.1.2 (A:1-131) Adipocyte lipid-binding protein, ALBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 24.4 bits (53), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 64 GVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKTCSYIGE 104
G E E + D+ VK TLD VL+ K GK+ + +
Sbjct: 67 GQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRK 107
>d1mdca_ b.60.1.2 (A:) Fatty acid-binding protein {Tobacco hornworm
(Manduca sexta) [TaxId: 7130]}
Length = 131
Score = 24.0 bits (52), Expect = 3.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 64 GVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKTCSYIGE 104
GVE + +VK T+D +V+ +K ++ E
Sbjct: 66 GVEFDDVIGAGDSVKSMYTVDGNVVTHVVKGDAGVATFKKE 106
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 198
Score = 23.7 bits (51), Expect = 6.1
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 7/36 (19%)
Query: 35 AKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVEC 70
A + V G ++ M VE VE
Sbjct: 2 AVIKVI-------GVGGGGGNAVNHMAKNNVEGVEF 30
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator
ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Length = 109
Score = 23.0 bits (49), Expect = 7.3
Identities = 6/47 (12%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 49 CSSAITRILDRMKDKG-VESVECSLPDQTVKVKSTLDPDVLLEAIKK 94
+ + L ++ + G V + +LE I+
Sbjct: 49 SKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRN 95
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A
homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 23.0 bits (49), Expect = 7.8
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 50 SSAITRILDRMKDKG-VESVECSLPDQTVKVKST 82
+T+ L ++KD + ++TV V T
Sbjct: 62 PYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVT 95
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ
{Thermotoga maritima [TaxId: 2336]}
Length = 194
Score = 23.0 bits (49), Expect = 8.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 48 GCSSAITRILDRMKDKGVESVEC 70
G A ++RM + G+ VE
Sbjct: 7 GVGGAGNNAINRMIEIGIHGVEF 29
>d1fdqa_ b.60.1.2 (A:) Brain fatty acid binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 131
Score = 22.9 bits (49), Expect = 8.8
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 2 HYLDSKQWDNYLKARPGASKSPEGTGLDNEP-TMAKVHVFKAEMTCDGCSSAITRILDRM 60
+S+ +D Y+KA G+ + V ++ +G I L
Sbjct: 9 KLTNSQNFDEYMKA----------LGVGFATRQVGNVTKPTVIISQEGDKVVIR-TLSTF 57
Query: 61 KDK------GVESVECSLPDQTVKVKSTLDPDVLLEAIKKSGKTCSYIGE 104
K+ G E E + D+ K +LD D L+ K GK +++ E
Sbjct: 58 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVRE 107
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A
homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Length = 125
Score = 22.7 bits (48), Expect = 9.3
Identities = 1/15 (6%), Positives = 5/15 (33%)
Query: 50 SSAITRILDRMKDKG 64
S + + + +
Sbjct: 64 QSDLVQHIKVLVKHS 78
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 22.9 bits (49), Expect = 9.6
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 34 MAKVHVFKAEMTCDGCSSAITRILDRMKDKGVESVEC 70
+A + V G ++RM ++G++ VE
Sbjct: 1 LAVIKVV-------GIGGGGVNAVNRMIEQGLKGVEF 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.379
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 392,196
Number of extensions: 15071
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 42
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)