BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7519
         (213 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
           With L-Phe From Arthrobacter Aurescens To 2.0a
 pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
           With L-Phe From Arthrobacter Aurescens To 2.0a
          Length = 313

 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 58  LEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFITISL-AMVGKFAISSSNVIIPIYTAE 115
           ++++  + + W  C +++  HL    + PGS    S   ++   A   + +  P+  AE
Sbjct: 105 IKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAXGLLEDDAPYEAAICAPLIAAE 163


>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
 pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
          Length = 766

 Score = 27.7 bits (60), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 83  GFAPGSFITISLAMVGKFAISSSNVIIPIYTAELF 117
           GFA GS   +SLA+ G F   +S   + + T ++F
Sbjct: 542 GFAIGSAALVSLALFGAFVSRASITTVDVLTPKVF 576


>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
          Length = 138

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 53 SDKEYLEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFI 90
          S  + +E +EK+ +GW  C +  KR     G+ P SF+
Sbjct: 30 STGDVVEVVEKSESGWWFCQMKAKR-----GWIPASFL 62


>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
 pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
          Length = 138

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 53 SDKEYLEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFI 90
          S  + +E +EK+ +GW  C +  KR     G+ P SF+
Sbjct: 31 STGDVVEVVEKSESGWWFCQMKAKR-----GWIPASFL 63


>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
          Domain Of P47phox
          Length = 193

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 53 SDKEYLEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFI 90
          S  + +E +EK+ +GW  C +  KR     G+ P SF+
Sbjct: 31 STGDVVEVVEKSESGWWFCQMKAKR-----GWIPASFL 63


>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
          Length = 193

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 53 SDKEYLEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFI 90
          S  + +E +EK+ +GW  C +  KR     G+ P SF+
Sbjct: 31 STGDVVEVVEKSESGWWFCQMKAKR-----GWIPASFL 63


>pdb|1WGS|A Chain A, Solution Structure Of The Tudor Domain From Mouse
          Hypothetical Protein Homologous To Histone
          Acetyltransferase
          Length = 133

 Score = 26.6 bits (57), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 6/51 (11%)

Query: 16 NQPEYFENFVINY---NK--EKYIDKNNVVLMKNTIKEMREKSDKEYLEKL 61
          N  E  E F ++Y   N+  ++++DKN + L K T+K+  +K+ ++YL +L
Sbjct: 39 NDQEGREEFYVHYVGFNRRLDEWVDKNRLALTK-TVKDAVQKNSEKYLSEL 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,947,098
Number of Sequences: 62578
Number of extensions: 217845
Number of successful extensions: 568
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 10
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)