Query psy7519
Match_columns 213
No_of_seqs 191 out of 2243
Neff 10.0
Searched_HMMs 13730
Date Fri Aug 16 20:26:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7519.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7519hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.5 1.8E-13 1.3E-17 110.2 11.5 132 44-177 68-209 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.2 2.7E-10 1.9E-14 89.4 13.0 119 59-177 281-405 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.9 4.9E-09 3.6E-13 83.7 11.0 126 45-172 295-430 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 98.6 8.4E-08 6.1E-12 74.7 10.0 129 47-177 55-193 (417)
5 d2adra2 g.37.1.1 (A:131-161) A 4.3 1.4E+02 0.01 13.0 0.8 10 62-71 9-18 (31)
6 d2csba2 a.60.2.4 (A:294-350) T 3.2 3.3E+02 0.024 13.0 1.9 17 59-75 7-23 (57)
7 d2efva1 a.43.1.12 (A:6-87) Unc 2.7 4.1E+02 0.03 14.5 2.0 16 60-75 62-77 (82)
8 d2eyqa6 d.315.1.1 (A:990-1147) 2.6 2.1E+02 0.015 17.4 0.7 12 60-71 57-68 (158)
9 d1aiea_ a.53.1.1 (A:) p53 tetr 2.0 2.3E+02 0.017 12.0 0.2 10 115-124 1-10 (31)
10 d1r9wa_ d.89.1.2 (A:) Replicat 1.9 3.3E+02 0.024 16.8 0.8 11 118-128 107-117 (145)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.46 E-value=1.8e-13 Score=110.21 Aligned_cols=132 Identities=14% Similarity=0.024 Sum_probs=98.9
Q ss_pred HHHHHhhhHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh--ccc----CChhHHHHHHHHHHHHhhhcccccceeecccc
Q psy7519 44 NTIKEMREKSDKEYLEKLEKNSNGWQVCNIFIKRHLMTL--GFA----PGSFITISLAMVGKFAISSSNVIIPIYTAELF 117 (213)
Q Consensus 44 ~~i~~~~~~~~~~~~~l~dr~GRr~~l~~~~~~~~i~~~--~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~E~~ 117 (213)
..+...++.+..+ +++||+|||+++.++.++..++.+ ... .+.......+++.+++.+..++....+++|.+
T Consensus 68 ~~~~~~~~~~~~G--~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 145 (447)
T d1pw4a_ 68 ISIAYGFSKFIMG--SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 145 (447)
T ss_dssp HHHHHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH--HHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 3344444444555 499999999999999988887766 222 24445556888888888888888999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHH---hhhcchhhHHHHHHHHHHHHHHHHH-ccCCCC
Q psy7519 118 PTKMRNLGVGASSVPAGVALILIPYLWHM---QSINIHFPMGLLGVVGVLGGLSVLL-LPDTTG 177 (213)
Q Consensus 118 p~~~R~~~~~~~~~~~~~g~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-lpet~~ 177 (213)
|++.|++..++.+....+|..++|.+... ...+|+..+.+.+.+.++..+..++ ++|++.
T Consensus 146 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 146 SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 99999999999999999999999887762 2346677777777776666665554 455544
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.15 E-value=2.7e-10 Score=89.42 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=93.9
Q ss_pred HHHhhcCChhHHHHHHHHHHHHhh--cccCChhHHHHHHHHHHHHhhhcccccceeeccccCcchhhHHHHHHH-HHHHH
Q psy7519 59 EKLEKNSNGWQVCNIFIKRHLMTL--GFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASS-VPAGV 135 (213)
Q Consensus 59 ~l~dr~GRr~~l~~~~~~~~i~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~E~~p~~~R~~~~~~~~-~~~~~ 135 (213)
++.||+|||+.+.++.....++.+ ...++........++.+++.+...+....+..|.+|++.|++..++.. ....+
T Consensus 281 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (417)
T d1pv7a_ 281 LIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHH
T ss_pred hhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence 599999999999999988888777 455555555556677778888888888999999999999999999865 45678
Q ss_pred HHHHHHHHHH--HhhhcchhhHHHHHHHHHHHHHHHHHc-cCCCC
Q psy7519 136 ALILIPYLWH--MQSINIHFPMGLLGVVGVLGGLSVLLL-PDTTG 177 (213)
Q Consensus 136 g~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-pet~~ 177 (213)
|..++|.+.+ .+..++...+++.+++.++..+...++ +++++
T Consensus 361 g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999887 356677788888888877776666554 55444
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.90 E-value=4.9e-09 Score=83.66 Aligned_cols=126 Identities=12% Similarity=0.049 Sum_probs=81.7
Q ss_pred HHHHhhhHHHHHHHHHHhhcCChhHHHHHHHHHHHH---hh--cccCCh--hHHHHHHHHHHHHhhhcccccceeecccc
Q psy7519 45 TIKEMREKSDKEYLEKLEKNSNGWQVCNIFIKRHLM---TL--GFAPGS--FITISLAMVGKFAISSSNVIIPIYTAELF 117 (213)
Q Consensus 45 ~i~~~~~~~~~~~~~l~dr~GRr~~l~~~~~~~~i~---~~--~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~E~~ 117 (213)
.+..+++.+..+ ++.||++||+..........+. .. ...... .......++.+++..+..+..+.+..|.+
T Consensus 295 ~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 372 (447)
T d1pw4a_ 295 EYAGIPGTLLCG--WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA 372 (447)
T ss_dssp HHHHHHHHHHHH--HHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred hhhhhhhhhhhh--hhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444445555 4999999876544333322222 22 222222 22233455556666777778888999999
Q ss_pred CcchhhHHHHHHHHHHHHH-HHHHHHHHH--HhhhcchhhHHHHHHHHHHHHHHHHHc
Q psy7519 118 PTKMRNLGVGASSVPAGVA-LILIPYLWH--MQSINIHFPMGLLGVVGVLGGLSVLLL 172 (213)
Q Consensus 118 p~~~R~~~~~~~~~~~~~g-~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 172 (213)
|++.|+++.|+.+..++++ .+++|.+.+ .+..++...+.+.++..+++.++..++
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888874 566788776 355667777777777777776665554
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.63 E-value=8.4e-08 Score=74.74 Aligned_cols=129 Identities=12% Similarity=-0.061 Sum_probs=66.3
Q ss_pred HHhhhHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh--cccCChhHHHHHHHHHHH----HhhhcccccceeeccccC--
Q psy7519 47 KEMREKSDKEYLEKLEKNSNGWQVCNIFIKRHLMTL--GFAPGSFITISLAMVGKF----AISSSNVIIPIYTAELFP-- 118 (213)
Q Consensus 47 ~~~~~~~~~~~~~l~dr~GRr~~l~~~~~~~~i~~~--~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~E~~p-- 118 (213)
...+..+..+ +++||+|||+.++++.....++.. .............++... ..+...........+..+
T Consensus 55 ~~~i~~~~~G--~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (417)
T d1pv7a_ 55 FSLLFQPLFG--LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV 132 (417)
T ss_dssp HHHHTHHHHH--HHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccch
Confidence 3344444444 599999999999998888777666 222222222221122222 222222222222222222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH-HhhhcchhhHHHHHHHHHHHHHHHH-HccCCCC
Q psy7519 119 TKMRNLGVGASSVPAGVALILIPYLWH-MQSINIHFPMGLLGVVGVLGGLSVL-LLPDTTG 177 (213)
Q Consensus 119 ~~~R~~~~~~~~~~~~~g~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~ 177 (213)
.+.|....+........+..+++.+.. +...+++..+........+..+... ..||++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T d1pv7a_ 133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred hhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhccccc
Confidence 223444556666677778888888777 3444444445544444444444343 3577665
No 5
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=4.27 E-value=1.4e+02 Score=12.99 Aligned_cols=10 Identities=0% Similarity=-0.276 Sum_probs=6.5
Q ss_pred hhcCChhHHH
Q psy7519 62 EKNSNGWQVC 71 (213)
Q Consensus 62 dr~GRr~~l~ 71 (213)
.+|.||.+++
T Consensus 9 R~FaRrDLlL 18 (31)
T d2adra2 9 RAFTRRDLLI 18 (31)
T ss_dssp CEESSHHHHH
T ss_pred chhhHHHHHH
Confidence 4577777664
No 6
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.20 E-value=3.3e+02 Score=12.96 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=12.5
Q ss_pred HHHhhcCChhHHHHHHH
Q psy7519 59 EKLEKNSNGWQVCNIFI 75 (213)
Q Consensus 59 ~l~dr~GRr~~l~~~~~ 75 (213)
-+.||+|-|--...++.
T Consensus 7 klqdrygiredvalcla 23 (57)
T d2csba2 7 KLQDRYGIREDVALCLA 23 (57)
T ss_dssp HHHHHHCCCHHHHHHHH
T ss_pred ehhhhhccHHHHHHHHH
Confidence 58899999876665543
No 7
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=2.73 E-value=4.1e+02 Score=14.47 Aligned_cols=16 Identities=0% Similarity=-0.168 Sum_probs=10.7
Q ss_pred HHhhcCChhHHHHHHH
Q psy7519 60 KLEKNSNGWQVCNIFI 75 (213)
Q Consensus 60 l~dr~GRr~~l~~~~~ 75 (213)
++||+|+-.-+++...
T Consensus 62 IIeKyGKatN~L~Ny~ 77 (82)
T d2efva1 62 IIQRLGKSANLLLNCE 77 (82)
T ss_dssp HHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhe
Confidence 6888887666655543
No 8
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.56 E-value=2.1e+02 Score=17.45 Aligned_cols=12 Identities=0% Similarity=-0.258 Sum_probs=9.1
Q ss_pred HHhhcCChhHHH
Q psy7519 60 KLEKNSNGWQVC 71 (213)
Q Consensus 60 l~dr~GRr~~l~ 71 (213)
+.||||.=+-=.
T Consensus 57 l~DRFG~lP~ev 68 (158)
T d2eyqa6 57 LIDRFGLLPDPA 68 (158)
T ss_dssp HHHHHCSCCHHH
T ss_pred HHHHcCCchHHH
Confidence 799999866543
No 9
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.03 E-value=2.3e+02 Score=12.05 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=0.0
Q ss_pred cccCcchhhH
Q psy7519 115 ELFPTKMRNL 124 (213)
Q Consensus 115 E~~p~~~R~~ 124 (213)
|.|..++||+
T Consensus 1 eyftl~irgr 10 (31)
T d1aiea_ 1 EYFTLQIRGR 10 (31)
T ss_dssp CCCCCCCCSH
T ss_pred CceEEEeccH
No 10
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=1.90 E-value=3.3e+02 Score=16.78 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred CcchhhHHHHH
Q psy7519 118 PTKMRNLGVGA 128 (213)
Q Consensus 118 p~~~R~~~~~~ 128 (213)
|++.|+...++
T Consensus 107 PPK~RS~~aAL 117 (145)
T d1r9wa_ 107 PPKLRSSVAAL 117 (145)
T ss_dssp CBCSSCHHHHH
T ss_pred CCCccCchhee
Done!