RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7519
(213 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.014
Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 19 EYFENFVINYNKEKYIDKNNVVLMKNTIKEMREKSDKEYLEKLEKN 64
+ E + +++ ++KN R +DK + ++ + +
Sbjct: 118 KDLEEWNQRQSEQ--VEKN--------KINNRI-ADKAFYQQPDAD 152
Score = 32.4 bits (73), Expect = 0.071
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 15/46 (32%)
Query: 30 KEKYIDKNNVVLMKNTIKEMREKSDKE-------YLEKLEKN--SN 66
+E D K +E REK+ K+ E++EKN +N
Sbjct: 99 QEL--DAA----SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Score = 29.7 bits (66), Expect = 0.52
Identities = 7/21 (33%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 45 TIKEMREKSDKEYLEKLEKNS 65
+I++ RE+ K L++L+ S
Sbjct: 86 SIRKWREEQRKR-LQELDAAS 105
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid
biosynthesis, membrane, phosphorylation; NMR {Rattus
norvegicus} SCOP: j.14.1.1
Length = 35
Score = 30.1 bits (67), Expect = 0.053
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 29 NKEKYIDKNNVVLMKNTIKEMREKSDKEYLEKLE 62
N++KY + V +K +K++ EKS KE+++K+E
Sbjct: 2 NEKKYHLQERVDKVKKKVKDVEEKS-KEWVQKVE 34
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.089
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 37/152 (24%)
Query: 2 GLYMIFPVGLFHYFNQ---PEYFENFVINYNKEKYIDKNNVVLMKNTIKEMREKSDKEYL 58
L IF G Q +YFE Y + Y L+ + IK E L
Sbjct: 155 QLVAIFG-G------QGNTDDYFEELRDLY--QTYHV-----LVGDLIKFSAET-----L 195
Query: 59 EKLEKNSNGW-----QVCNIFIKRHLMTLGFAPG----SFITISLAMVGKFAISSSNVII 109
+L + + Q NI L P I IS ++G I ++ ++
Sbjct: 196 SELIRTTLDAEKVFTQGLNI--LEWLENPSNTPDKDYLLSIPISCPLIG--VIQLAHYVV 251
Query: 110 PIYTAELFPTKMRNLGVGASSVPAGV--ALIL 139
P ++R+ GA+ G+ A+ +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Score = 28.5 bits (63), Expect = 2.3
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 25 VINYNKEK--YI---DKNNVVLMKNTIKEMREKSDKEYLEKLEKNSNGWQVCNIFIKRHL 79
++NYN E Y+ D + + N + ++ + + +L+K+ + +V + HL
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID--IIELQKSLSLEEV-----EGHL 1895
Query: 80 M 80
Sbjct: 1896 F 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.12
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 24/52 (46%)
Query: 54 DKEYLEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFITISLAMVGKFAISSS 105
+K+ L+KL+ S +K +A S + A+ AI ++
Sbjct: 18 EKQALKKLQ-AS---------LKL------YADDS----APAL----AIKAT 45
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake,
beta- transcription regulator, metal binding protein;
HET: GOL; 2.00A {Thermococcus thioreducens}
Length = 77
Score = 26.8 bits (60), Expect = 1.6
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 75 IKRHLMTLGFAPGSFITI 92
++ L+++G PG+ I +
Sbjct: 27 ARQKLVSMGLTPGATIQV 44
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics
consortium, SGC, alternative splicing,
calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens}
Length = 114
Score = 27.5 bits (61), Expect = 1.7
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 88 SFITISLAMVGKFAISSSNVIIPIYTAEL 116
+F I+ VG F + S + + + +L
Sbjct: 50 TFDIIATEDVGIFDVRSKFLGVEMEKVQL 78
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding,
prokaryotic SH3 stenotrophomonus maltophilia, metal
transport; 1.70A {Stenotrophomonas maltophilia}
Length = 85
Score = 26.9 bits (60), Expect = 1.7
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 75 IKRHLMTLGFAPGSFITI 92
I R L LGF G + +
Sbjct: 27 IARRLRELGFVKGEEVRM 44
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 28.5 bits (64), Expect = 1.8
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 124 LGVGASSVPAGVALILIPYLWHMQSINIHFPMG 156
L + + VP +I ++ P G
Sbjct: 163 LSLKSDEVPVEEVFEIIENMYRFGG--TGIPEG 193
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT,
structural genomics, PSI-2, protein structure
initiative; NMR {Chlorobaculum tepidum}
Length = 105
Score = 27.0 bits (60), Expect = 2.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 75 IKRHLMTLGFAPGSFITI 92
++R LM LG G+ + +
Sbjct: 23 VRRRLMDLGLVRGAKLKV 40
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella
pneumoniae} SCOP: b.34.1.2
Length = 75
Score = 26.4 bits (59), Expect = 2.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 75 IKRHLMTLGFAPGSFITI 92
++ L++LG PGS +
Sbjct: 22 YRQKLLSLGMLPGSSFHV 39
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics,
PAT89, PSI-2, protein structure initiative; NMR
{Pseudomonas aeruginosa} SCOP: b.34.1.2
Length = 75
Score = 26.4 bits (59), Expect = 2.3
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 75 IKRHLMTLGFAPGSFITI 92
++ L ++G PG+ + +
Sbjct: 23 YRQRLFSMGLLPGAALRV 40
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 28.1 bits (62), Expect = 2.4
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 6 IFPVGL-FHYFNQPEYFENFVINYNKE--KYIDKNNVVLMKNTIKEMREKSDKEYLEKLE 62
+GL F+NF+I ++ + + K K+M++K D+E KLE
Sbjct: 267 FAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLE 326
Query: 63 K 63
Sbjct: 327 H 327
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; NMR {Clostridium thermocellum atcc 27405}
Length = 81
Score = 26.5 bits (59), Expect = 2.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 75 IKRHLMTLGFAPGSFITI 92
+KR +M +G G I I
Sbjct: 24 LKRRIMDMGITRGCEIYI 41
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Clostridium acetobutylicum}
Length = 86
Score = 26.1 bits (58), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 75 IKRHLMTLGFAPGSFITI 92
++R +M +G G+ I I
Sbjct: 27 VRRKIMDMGIVRGTEIYI 44
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like
fold; structural genomics, joint center for structural
genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans
OS217}
Length = 239
Score = 27.4 bits (60), Expect = 3.4
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 122 RNLGVGASSVPAGVALI----LIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLPDTTG 177
++G V + L LI YL+ + P+ LG + + P
Sbjct: 96 ASIGFDREDVLSSKPLPATETLIAYLYWI--SATGNPVQRLGYSYWAENVYGYIDPVLKA 153
Query: 178 LADNL 182
+ L
Sbjct: 154 IQSTL 158
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, ,
structural genomic, structural genomics, PSI-2; NMR
{Clostridium thermocellum}
Length = 162
Score = 27.2 bits (60), Expect = 3.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 75 IKRHLMTLGFAPGSFITI 92
+ L+ +GF PG I I
Sbjct: 23 LHEKLVGMGFVPGEEIEI 40
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_S 3izc_S 3izs_S
Length = 178
Score = 26.3 bits (57), Expect = 9.0
Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 40 VLMKNTIKEMREKSDKEYLEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFITISLAMVGK 99
+L N I E + K Y L S N++ + TL A T +
Sbjct: 60 ILAINEIFEKNPTTIKNYGIWLRYQSRT-GYHNMYKEYRDTTLNGAVEQMYTEMASRHR- 117
Query: 100 FAISSSNVIIPIYTAELFPTKMRNL 124
II T K N
Sbjct: 118 -VRFPCIQIIKTATVHFKLCKRDNT 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.424
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,241,650
Number of extensions: 188469
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 28
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)