RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7519
(213 letters)
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.5 bits (63), Expect = 0.59
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 16 NQPEYFENFVINYNKEKYIDKNNVVLMKNTIKEMREKSDKEYLEKLEKNSNGWQVCNIFI 75
+ E + Y + + + + +IK E K+Y EK + + F
Sbjct: 249 KKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKP--EVYLKKYSEKCSNLNF----EDEFK 302
Query: 76 KR 77
+
Sbjct: 303 EE 304
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA
{Klebsiella pneumoniae [TaxId: 573]}
Length = 75
Score = 26.6 bits (59), Expect = 0.65
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 71 CNIFIKRHLMTLGFAPGSFITI 92
+ ++ L++LG PGS +
Sbjct: 18 ISPAYRQKLLSLGMLPGSSFHV 39
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 66
Score = 26.1 bits (58), Expect = 0.85
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 42 MKNTIKEMREKSDKEYLEKLEK 63
MK EMR ++ ++++
Sbjct: 1 MK--PSEMRNLQATDFAKEIDA 20
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p)
{Escherichia coli [TaxId: 562]}
Length = 60
Score = 25.7 bits (57), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 42 MKNTIKEMREKSDKEYLEKLEK 63
MK KE+REKS +E +L
Sbjct: 1 MK--AKELREKSVEELNTELLN 20
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 65
Score = 25.7 bits (57), Expect = 1.2
Identities = 4/23 (17%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 41 LMKNTIKEMREKSDKEYLEKLEK 63
++ ++E+R+ + E +L+
Sbjct: 2 VLH--VQEIRDMTPAEREAELDD 22
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 25.7 bits (57), Expect = 1.3
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 42 MKNTIKEMREKSDKEYLEKLEK 63
MK E+R +D+E LE+
Sbjct: 1 MK--ASELRNYTDEELKNLLEE 20
>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 25.4 bits (56), Expect = 1.7
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 75 IKRHLMTLGFAPGSFITI 92
++ L ++G PG+ + +
Sbjct: 23 YRQRLFSMGLLPGAALRV 40
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.7 bits (56), Expect = 2.4
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 37 NNVVLMKNTIKEMREKSDKEYLEKLE----KNSNGWQVCNIFIKRHLMTLGFAPGSFITI 92
V+ + N + D+EY E +E + S V +I I R + + I +
Sbjct: 4 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFV 63
Query: 93 S 93
Sbjct: 64 E 64
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory
sulfite reductase {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 111
Score = 25.1 bits (55), Expect = 3.6
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 25 VINYNKEKYIDKNNVVLMKNTIKEMREKSDKEYLEKLEKNSNGWQVCNI 73
++ Y +E + +K KE E + +L + C +
Sbjct: 55 LVKYLREYWETFGTCPPIKMVTKET--GFSLEKIYQLFPSGPAHGACKV 101
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of
dissimilatory sulfite reductase {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 103
Score = 24.2 bits (53), Expect = 6.0
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 25 VINYNKEKYIDKNNVVLMKNTIKEMREKSDKEYLEKLEKNSNGWQVCNI 73
+I++ ++ Y +++ K K + + +L + G C +
Sbjct: 47 IIDFLQDYYKKNGIAPMVRILSKNTGFK--LKEVYELFPSGPGKGACKM 93
>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 232
Score = 24.7 bits (53), Expect = 8.7
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 2 GLYMIFPVGLFHYFNQPEYFENFVINYNKEKYIDK 36
++I + + Y P+ F ++ + +D
Sbjct: 180 DYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDM 214
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains
{Human (Homo sapiens), CD1a [TaxId: 9606]}
Length = 177
Score = 24.6 bits (53), Expect = 9.6
Identities = 6/42 (14%), Positives = 10/42 (23%)
Query: 49 MREKSDKEYLEKLEKNSNGWQVCNIFIKRHLMTLGFAPGSFI 90
R E ++LE + + R F
Sbjct: 48 SRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFE 89
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Length = 197
Score = 24.4 bits (53), Expect = 9.9
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 128 ASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVL 164
S + + VAL + ++++ P +G+ G+L
Sbjct: 138 LSGIASSVALGIFSATLGAYALSLGVPAIAVGIAGIL 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.424
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 799,351
Number of extensions: 35835
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 18
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)