Query psy752
Match_columns 123
No_of_seqs 165 out of 1158
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:27:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lo1_A Steroid hormone recepto 99.6 3.3E-16 1.1E-20 104.3 1.1 56 1-56 38-93 (98)
2 1cit_A NGFI-B, protein (orphan 99.5 2.7E-15 9.2E-20 98.3 3.0 53 1-53 34-86 (89)
3 1dsz_A RAR-alpha, retinoic aci 99.5 2.3E-15 7.8E-20 98.1 1.9 47 2-48 39-85 (86)
4 2han_A Protein ultraspiracle; 99.5 2.1E-15 7.3E-20 99.5 1.7 49 1-49 44-92 (93)
5 1dsz_B RXR-alpha, retinoic aci 99.5 3.3E-15 1.1E-19 97.1 2.0 46 1-46 39-84 (85)
6 3cbb_A HNF-4-alpha, hepatocyte 99.5 3E-15 1E-19 95.8 1.6 45 1-45 34-78 (78)
7 2a66_A Orphan nuclear receptor 99.5 6.6E-15 2.3E-19 100.3 2.5 52 1-52 43-94 (113)
8 1ynw_B Retinoic acid receptor 99.5 4.5E-15 1.5E-19 99.0 1.7 49 1-49 37-85 (99)
9 2ebl_A COUP transcription fact 99.5 5.6E-15 1.9E-19 96.8 1.2 47 1-47 41-87 (89)
10 1kb2_A Vitamin D3 receptor; VD 99.5 4.3E-15 1.5E-19 100.8 -0.3 46 1-46 40-85 (110)
11 1a6y_A Orphan nuclear receptor 99.4 2E-14 6.7E-19 95.0 1.9 47 2-48 42-89 (94)
12 1hcq_A Protein (estrogen recep 99.4 1.7E-14 6E-19 93.5 1.3 44 2-45 39-82 (84)
13 3g9m_A Glucocorticoid receptor 99.4 1.5E-14 5.2E-19 94.8 0.8 49 2-50 37-85 (90)
14 4hn5_A Glucocorticoid receptor 99.4 3.1E-14 1.1E-18 97.5 1.4 48 2-49 64-111 (117)
15 2han_B Ecdysone receptor; tran 99.4 4.1E-14 1.4E-18 97.2 0.7 46 1-46 42-87 (119)
16 2nll_B Protein (thyroid hormon 99.4 5.3E-14 1.8E-18 94.4 -0.4 49 3-51 39-87 (103)
17 3dzy_A Retinoic acid receptor 99.3 9.2E-13 3.1E-17 107.9 5.7 49 1-49 171-219 (467)
18 2lze_A A primordial catalytic 99.3 5.2E-13 1.8E-17 87.0 2.5 42 1-42 36-77 (87)
19 1r4i_A Androgen receptor; AR, 99.3 3.9E-13 1.3E-17 90.4 1.4 44 2-45 42-85 (105)
20 3dzy_D Peroxisome proliferator 99.1 5.5E-11 1.9E-15 96.0 6.0 45 3-49 86-131 (419)
21 1lbd_A RXR_LBD, retinoid X rec 97.6 2.6E-05 8.8E-10 59.2 2.7 57 26-93 11-67 (282)
22 1ovl_A Orphan nuclear receptor 94.6 0.0048 1.6E-07 46.3 -0.5 51 35-95 1-51 (271)
23 1xdk_B RAR-beta, retinoic acid 89.9 0.065 2.2E-06 40.9 0.2 47 35-93 1-47 (303)
24 2hc4_A Vitamin D receptor; alp 28.6 31 0.0011 25.8 2.4 31 69-103 4-34 (302)
No 1
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.57 E-value=3.3e-16 Score=104.28 Aligned_cols=56 Identities=79% Similarity=1.389 Sum_probs=49.6
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccccCccccccCCC
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNP 56 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~~~~~~~~ 56 (123)
+..|.|..+++|.|++..|..|++|||+|||++||++++||.+|+++++++.++..
T Consensus 38 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~r~k~~~~~ 93 (98)
T 1lo1_A 38 NIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYKRRL 93 (98)
T ss_dssp TCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCTTCCCCCC---
T ss_pred cCccccCccccccccccccccccchhHHHHhHcCCCHHHeecccccCcccccCCCC
Confidence 35789999999999999999999999999999999999999999999988876653
No 2
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.53 E-value=2.7e-15 Score=98.30 Aligned_cols=53 Identities=51% Similarity=0.990 Sum_probs=47.3
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccccCcccccc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR 53 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~~~~~ 53 (123)
+..|.|..+++|.|++..|+.|++|||+|||++||++++||.|+...++.+.+
T Consensus 34 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~~~r~r~p 86 (89)
T 1cit_A 34 SAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLP 86 (89)
T ss_dssp TCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGTTCCSCCC
T ss_pred cceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeecccccCccccCC
Confidence 35789999999999999999999999999999999999999998776666553
No 3
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.52 E-value=2.3e-15 Score=98.06 Aligned_cols=47 Identities=49% Similarity=0.878 Sum_probs=40.5
Q ss_pred CceecCCCCCcccccccccccccccchhhhhccccccccccccccCc
Q psy752 2 IEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGG 48 (123)
Q Consensus 2 ~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~ 48 (123)
..|.|..+++|.|++..|+.|++|||+|||++||++++||.+|++++
T Consensus 39 ~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~k 85 (86)
T 1dsz_A 39 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 85 (86)
T ss_dssp CCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC-----
T ss_pred cceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhcccccc
Confidence 57899999999999999999999999999999999999999998654
No 4
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.52 E-value=2.1e-15 Score=99.49 Aligned_cols=49 Identities=43% Similarity=0.882 Sum_probs=41.9
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccccCcc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~ 49 (123)
+..|.|..+++|.|++..|..|++|||+|||++||++++||.+|++.++
T Consensus 44 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~ 92 (93)
T 2han_A 44 DLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGIHR 92 (93)
T ss_dssp TCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC-----
T ss_pred ccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccCcccC
Confidence 3578999999999999999999999999999999999999999987554
No 5
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.51 E-value=3.3e-15 Score=97.11 Aligned_cols=46 Identities=50% Similarity=1.029 Sum_probs=43.2
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhcccccccccccccc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 46 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~ 46 (123)
+..|.|..+++|.|++..|..|++|||+|||++||++++||.+|++
T Consensus 39 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp TCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred ccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 3578999999999999999999999999999999999999999975
No 6
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.51 E-value=3e-15 Score=95.82 Aligned_cols=45 Identities=42% Similarity=0.891 Sum_probs=40.8
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~ 45 (123)
+..|.|+.+++|.|++..|+.|++|||+|||++||++++||.+|+
T Consensus 34 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 34 NHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp TCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred ccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 357899999999999999999999999999999999999999985
No 7
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.49 E-value=6.6e-15 Score=100.25 Aligned_cols=52 Identities=56% Similarity=1.078 Sum_probs=47.9
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccccCccccc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKY 52 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~~~~ 52 (123)
+..|.|..+++|.|++..|..|++|||+|||++||++++||.+|++.++.+.
T Consensus 43 ~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~~~r~~~ 94 (113)
T 2a66_A 43 NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKF 94 (113)
T ss_dssp TCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCCSSCCTT
T ss_pred cccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccccCCCCCc
Confidence 3578999999999999999999999999999999999999999998887764
No 8
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.49 E-value=4.5e-15 Score=98.96 Aligned_cols=49 Identities=49% Similarity=1.001 Sum_probs=39.0
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccccCcc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~ 49 (123)
+..|.|..+++|.|++..|..|++|||+|||++||++++||.+|++.+.
T Consensus 37 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~ 85 (99)
T 1ynw_B 37 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKD 85 (99)
T ss_dssp TCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC--------
T ss_pred ccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccccccc
Confidence 3578999999999999999999999999999999999999999987554
No 9
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-15 Score=96.77 Aligned_cols=47 Identities=40% Similarity=0.880 Sum_probs=43.5
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccccC
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~ 47 (123)
+..|.|+.+++|.|++..|+.|++|||+|||++||++++||.+|++.
T Consensus 41 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 87 (89)
T 2ebl_A 41 NLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGPS 87 (89)
T ss_dssp TCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCCC
T ss_pred ccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCCCC
Confidence 35789999999999999999999999999999999999999999753
No 10
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.46 E-value=4.3e-15 Score=100.77 Aligned_cols=46 Identities=41% Similarity=0.868 Sum_probs=42.7
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhcccccccccccccc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 46 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~ 46 (123)
+..|.|..+++|.|++..|..|++|||+|||++||++++|+.+|..
T Consensus 40 ~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~ 85 (110)
T 1kb2_A 40 KALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEV 85 (110)
T ss_dssp TCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHH
T ss_pred ccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHHH
Confidence 3578999999999999999999999999999999999999999865
No 11
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.44 E-value=2e-14 Score=95.02 Aligned_cols=47 Identities=40% Similarity=0.923 Sum_probs=40.6
Q ss_pred Cce-ecCCCCCcccccccccccccccchhhhhccccccccccccccCc
Q psy752 2 IEY-TCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGG 48 (123)
Q Consensus 2 ~~y-~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~ 48 (123)
..| .|..+++|.|++..|..|++|||+|||++||++++||.+|++..
T Consensus 42 ~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 89 (94)
T 1a6y_A 42 IQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKR 89 (94)
T ss_dssp CCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC----
T ss_pred cceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcCcCc
Confidence 457 59999999999999999999999999999999999999997543
No 12
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.44 E-value=1.7e-14 Score=93.47 Aligned_cols=44 Identities=57% Similarity=1.174 Sum_probs=34.6
Q ss_pred CceecCCCCCcccccccccccccccchhhhhccccccccccccc
Q psy752 2 IEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45 (123)
Q Consensus 2 ~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~ 45 (123)
..|.|..+++|.|++..|..|++|||+|||++||++++||.+|.
T Consensus 39 ~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 39 NDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred cccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 57899999999999999999999999999999999999999985
No 13
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.43 E-value=1.5e-14 Score=94.82 Aligned_cols=49 Identities=45% Similarity=0.846 Sum_probs=41.2
Q ss_pred CceecCCCCCcccccccccccccccchhhhhccccccccccccccCccc
Q psy752 2 IEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQ 50 (123)
Q Consensus 2 ~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~~ 50 (123)
..|.|..+++|.|++..|..|++|||+|||++||++++||.+|+..+.+
T Consensus 37 ~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~~~~ 85 (90)
T 3g9m_A 37 HNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQ 85 (90)
T ss_dssp CCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC------
T ss_pred CceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhcccccccccc
Confidence 5689999999999999999999999999999999999999998654443
No 14
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.41 E-value=3.1e-14 Score=97.47 Aligned_cols=48 Identities=44% Similarity=0.845 Sum_probs=36.5
Q ss_pred CceecCCCCCcccccccccccccccchhhhhccccccccccccccCcc
Q psy752 2 IEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49 (123)
Q Consensus 2 ~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~ 49 (123)
..|.|.++++|.|++..|..|++|||+|||++||++++||.+|+.++.
T Consensus 64 ~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~k~~ 111 (117)
T 4hn5_A 64 HNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGI 111 (117)
T ss_dssp CCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC----------
T ss_pred CceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhccccccccc
Confidence 568999999999999999999999999999999999999999865443
No 15
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.39 E-value=4.1e-14 Score=97.17 Aligned_cols=46 Identities=35% Similarity=0.687 Sum_probs=42.6
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhcccccccccccccc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 46 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~ 46 (123)
+..|.|..+++|.|++..|+.|++|||+|||++||++++|+.+|+.
T Consensus 42 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~ 87 (119)
T 2han_B 42 SAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQC 87 (119)
T ss_dssp TCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHH
T ss_pred ccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchhhh
Confidence 3578999999999999999999999999999999999999998864
No 16
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.36 E-value=5.3e-14 Score=94.37 Aligned_cols=49 Identities=39% Similarity=0.752 Sum_probs=44.5
Q ss_pred ceecCCCCCcccccccccccccccchhhhhccccccccccccccCcccc
Q psy752 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51 (123)
Q Consensus 3 ~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~~~ 51 (123)
.|.|..+++|.|++..|..|++|||+||+++||++++||.++.+..+.+
T Consensus 39 ~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~~~~k~~ 87 (103)
T 2nll_B 39 SYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRK 87 (103)
T ss_dssp GCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHHHHHHHH
T ss_pred hhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhhhHHhhh
Confidence 6999999999999999999999999999999999999999987655444
No 17
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.33 E-value=9.2e-13 Score=107.90 Aligned_cols=49 Identities=49% Similarity=1.001 Sum_probs=44.7
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhccccccccccccccCcc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~ 49 (123)
+..|.|+++++|.+++..|+.|++|||+||+++||++++||.+|++.++
T Consensus 171 ~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~k~ 219 (467)
T 3dzy_A 171 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKD 219 (467)
T ss_dssp TCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCCCCC
T ss_pred CCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhcccccccc
Confidence 3578999999999999999999999999999999999999999976543
No 18
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.31 E-value=5.2e-13 Score=87.00 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=37.6
Q ss_pred CCceecCCCCCcccccccccccccccchhhhhcccccccccc
Q psy752 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRL 42 (123)
Q Consensus 1 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~ 42 (123)
+..|.|+.+++|.|++..|+.|++|||+|||+|||....+..
T Consensus 36 ~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~~ 77 (87)
T 2lze_A 36 DLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGGS 77 (87)
T ss_dssp SCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCCC
T ss_pred CCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCcc
Confidence 457999999999999999999999999999999998875543
No 19
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.30 E-value=3.9e-13 Score=90.40 Aligned_cols=44 Identities=41% Similarity=0.913 Sum_probs=36.4
Q ss_pred CceecCCCCCcccccccccccccccchhhhhccccccccccccc
Q psy752 2 IEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45 (123)
Q Consensus 2 ~~y~C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~ 45 (123)
..|.|..+++|.|++..|..|++|||+|||++||++++++..+.
T Consensus 42 ~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~ 85 (105)
T 1r4i_A 42 QKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKL 85 (105)
T ss_dssp CCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC------
T ss_pred CceeeccCCccccCccccccchhchHHHHHhhhcccchhhhccc
Confidence 57899999999999999999999999999999999999887764
No 20
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.13 E-value=5.5e-11 Score=96.05 Aligned_cols=45 Identities=42% Similarity=0.922 Sum_probs=39.4
Q ss_pred cee-cCCCCCcccccccccccccccchhhhhccccccccccccccCcc
Q psy752 3 EYT-CPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49 (123)
Q Consensus 3 ~y~-C~~~~~C~i~~~~r~~C~~CR~~kCl~~GM~~~~V~~~r~~~~~ 49 (123)
.|. | .++|.|++..|+.|++|||+||+++||++++||.+|++.++
T Consensus 86 ~~~~c--~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~~~~~ 131 (419)
T 3dzy_D 86 IYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 131 (419)
T ss_dssp CCCCC--CSCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCCTTTT
T ss_pred ccccc--cCCCCcccccCccchhhhHHHHhhcccchhheecccccccc
Confidence 454 5 46899999999999999999999999999999999976543
No 21
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=97.61 E-value=2.6e-05 Score=59.19 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=13.3
Q ss_pred cchhhhhccccccccccccccCccccccCCCCCCCCCCCCCCCCCChhHHhhHHHHHHHHHhccCCCC
Q psy752 26 RFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEDLERNTEISVSMMSCDGDTS 93 (123)
Q Consensus 26 R~~kCl~~GM~~~~V~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~~~~~~~li~~L~~ae~~~~ 93 (123)
.--||+++||+++|||.+|++.+++.... .... .+...... .+.+++++..+|++..
T Consensus 11 ~~~kCl~vGMkkeaVq~~R~~~~~~~~~~---~~~~--~~~~~~~~------~~~i~~~~~~~e~~~~ 67 (282)
T 1lbd_A 11 SSGLVPRGSHKREAVQEERQRGKDRNENE---VEST--SSANEDMP------VERILEAELAVEPKTE 67 (282)
T ss_dssp ---------------------------------------CCTTTSC------HHHHHHHHHTTCCCHH
T ss_pred CCCCcCccCCcHHhhcCCCCCCCCCCCCC---CCCC--CCCCCCCC------HHHHHHHHHhcCCccc
Confidence 34699999999999999998765543111 0010 11111111 2589999999988653
No 22
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=94.63 E-value=0.0048 Score=46.25 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=10.9
Q ss_pred ccccccccccccCccccccCCCCCCCCCCCCCCCCCChhHHhhHHHHHHHHHhccCCCCCC
Q psy752 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEDLERNTEISVSMMSCDGDTSDL 95 (123)
Q Consensus 35 M~~~~V~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~~~~~~~li~~L~~ae~~~~~~ 95 (123)
|.+++||.||.++++++..++.......+++.+ + ..+|..|+.||.++++.
T Consensus 1 M~kE~Vr~dr~~~~r~~~~~~~~~~~~~~~~~~-----~-----~~li~~l~~a~~~~~~~ 51 (271)
T 1ovl_A 1 MVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSP-----P-----VSLISALVRAHVDSNPA 51 (271)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHTSCC
T ss_pred CCccccccCccccCCCCCCCCCCCcccCCCCCC-----H-----HHHHHHHHHHHHHhCCC
Confidence 889999999999888876655443222222111 1 26777777777766553
No 23
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=89.87 E-value=0.065 Score=40.87 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=12.3
Q ss_pred ccccccccccccCccccccCCCCCCCCCCCCCCCCCChhHHhhHHHHHHHHHhccCCCC
Q psy752 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEDLERNTEISVSMMSCDGDTS 93 (123)
Q Consensus 35 M~~~~V~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~~~~~~~li~~L~~ae~~~~ 93 (123)
|++++||.+|.++++++...... ....++.+. +.+|+.|+.||.+++
T Consensus 1 M~rEaVr~~R~~~~~~~~~~~~~--------~~~~~~~~~----~~li~~l~~a~~~~~ 47 (303)
T 1xdk_B 1 MSKESVRNDRNKKKKEPSKQECT--------ESYEMTAEL----DDLTEKIRKAHQETF 47 (303)
T ss_dssp -------------------------------------CCT----HHHHHHHHHHHHHHS
T ss_pred CCHHHHhhccccccccccccCCC--------CCCCCCHHH----HHHHHHHHHHHHHhC
Confidence 88999999998766544322110 011122222 478888888887654
No 24
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=28.55 E-value=31 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCChhHHhhHHHHHHHHHhccCCCCCCCCCccccc
Q psy752 69 IPSLEDLERNTEISVSMMSCDGDTSDLGGLSYIKK 103 (123)
Q Consensus 69 ~~s~e~~~~~~~li~~L~~ae~~~~~~~~~~~~~~ 103 (123)
.++.|+. .+|..|+.||.++++.....+..-
T Consensus 4 ~lt~eq~----~~i~~l~~a~~~t~~~~~~~~~~~ 34 (302)
T 2hc4_A 4 MLSDEQM----QIINSLVEAHHKTYDDSYSDFVRF 34 (302)
T ss_dssp CCCHHHH----HHHHHHHHHHHTTCCTTCGGGGGS
T ss_pred CCCHHHH----HHHHHHHHHHHhcCCCCccccccc
Confidence 4567764 999999999999987665555433
Done!