RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy752
(123 letters)
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
binding domain, HERR2, hormone nuclear receptor; NMR
{Homo sapiens} SCOP: g.39.1.2
Length = 98
Score = 89.0 bits (221), Expect = 1e-24
Identities = 45/57 (78%), Positives = 51/57 (89%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPD 57
NIEY+CPA+N+CEI KRRRK+CQACRF K L+ GMLKEGVRLDRVRGGRQKY+R D
Sbjct: 38 NIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYKRRLD 94
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate
response gene product, transcription factor, monomeric
protein-DNA complex; HET: DNA; 2.70A {Rattus
norvegicus} SCOP: g.39.1.2
Length = 89
Score = 85.9 bits (213), Expect = 2e-23
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNP 56
+ +Y C A+ DC ++KRRR CQ CRFQKCL GM+KE VR D ++G R + P
Sbjct: 34 SAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 89
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger,
DNA- binding domain, transcription factor, FTZ-F1,
C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Length = 113
Score = 86.0 bits (213), Expect = 3e-23
Identities = 30/69 (43%), Positives = 39/69 (56%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS 60
N YTC + +C+I+K +RK C CRFQKCL GM E VR DR+RGGR K+
Sbjct: 43 NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDR 102
Query: 61 QQWPPNKSI 69
K++
Sbjct: 103 ALKQQKKAL 111
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery,
lever ARM, transcription, hormone; HET: DNA; 1.61A
{Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B*
3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A*
3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A*
1gdc_A 2gda_A 1rgd_A ...
Length = 90
Score = 80.5 bits (199), Expect = 2e-21
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR 53
Y C NDC I+K RRK C ACR++KCL+ GM E + + G Q+
Sbjct: 36 QHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQAT 88
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex,
transcription/DNA complex; 3.10A {Rattus norvegicus}
SCOP: g.39.1.2
Length = 105
Score = 79.4 bits (196), Expect = 7e-21
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPD 57
+Y C + NDC I+K RRK C +CR +KC GM +L ++ + +
Sbjct: 41 KQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLKLQEEGENS 97
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with
drug, transcription/DNA complex; HET: DNA; 2.40A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Length = 84
Score = 77.0 bits (190), Expect = 4e-20
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47
+ +Y CPA+N C I+K RRK+CQACR +KC GM+K G+R DR G
Sbjct: 38 HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGG 84
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex,
transcription/DNA complex; 2.70A {Homo sapiens} SCOP:
g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Length = 110
Score = 76.8 bits (189), Expect = 1e-19
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNP 56
+TCP + DC I K R+ CQACR ++C+ GM+KE + D +++
Sbjct: 40 KALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKR 95
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR,
nuclear receptor, protein-DNA complex, transcripti
complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Length = 99
Score = 76.3 bits (188), Expect = 1e-19
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS 60
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG + S
Sbjct: 37 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSS 96
Query: 61 QQ 62
Sbjct: 97 AN 98
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear
receptor, protein-DNA, transcription/DNA complex; HET:
DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A*
1rxr_A 1r0n_A 1r0o_A 2nll_A*
Length = 85
Score = 75.8 bits (187), Expect = 1e-19
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG
Sbjct: 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 85
>2han_A Protein ultraspiracle; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2
Length = 93
Score = 75.5 bits (186), Expect = 2e-19
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49
++ Y C + +C I+KR+R CQ CR+QKCL GM +E V+ +R R
Sbjct: 44 DLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGIHR 92
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Length = 86
Score = 74.7 bits (184), Expect = 4e-19
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49
N+ YTC +C INK R CQ CR QKC GM KE VR DR + +
Sbjct: 38 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK 86
>2han_B Ecdysone receptor; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2 PDB: 1r0o_B 1r0n_B
Length = 119
Score = 71.5 bits (175), Expect = 2e-17
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRN 55
+ Y C CE++ R+ CQ CR +KCL GM E V + +++ ++
Sbjct: 42 SAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKA 96
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding,
reverb, REV- ERB, transcription regulation,
transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Length = 94
Score = 68.5 bits (168), Expect = 1e-16
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 1 NIEYT-CPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR 53
NI+Y C + +C I + R CQ CRF+KCL GM ++ VR R+ R+K R
Sbjct: 41 NIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIP-KREKQR 93
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 68.2 bits (167), Expect = 2e-16
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
Y+C C I+K R CQ CRF+KC+ GM + V D R ++K
Sbjct: 39 SYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRK 87
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 72.4 bits (177), Expect = 2e-16
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS 60
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG + +
Sbjct: 171 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVES--T 228
Query: 61 QQWPPNKSIPSLEDLERNTE 80
+ + + + E E
Sbjct: 229 SSANEDMPVERILEAELAVE 248
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
protein, receptor, transcription regulation, zinc,
EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Length = 89
Score = 66.9 bits (164), Expect = 4e-16
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45
N+ YTC A+ +C I++ R CQ CR +KCL+ GM +E V+
Sbjct: 41 NLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSG 85
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding
domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Length = 78
Score = 65.8 bits (161), Expect = 9e-16
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
N Y+C S C ++K +R C+ CR +KC R GM KE V+ +R
Sbjct: 34 NHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER 77
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 69.7 bits (170), Expect = 3e-15
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDL-- 58
+ Y N C I+K+ R CQ CRFQKCL GM +R R+ ++
Sbjct: 84 KLIYDRCDLN-CRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSD 142
Query: 59 LSQQWPPNKSIPSLEDLERNTEISVSMMSCDGDTSDLGGLS 99
+ Q P + + +L ++ I ++ + L G +
Sbjct: 143 IDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKT 183
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 46.7 bits (111), Expect = 3e-07
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 10 NDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPD 57
C + KR+ K Q + + +G++ + +
Sbjct: 21 FQCAV-KRKEKKAQKDKDKPNSTTSCSPDGIKQEIDPQRLDTDSQLLS 67
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 45.9 bits (109), Expect = 4e-07
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEDL 75
M+KE VR D ++G R + P + PP+ + + L
Sbjct: 1 MVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISAL 41
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 42.9 bits (101), Expect = 5e-06
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 19 RKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS--QQWPPNKSIPSLEDLE 76
+ + +E V+ +R RG + S + P + + + +E
Sbjct: 7 HHHHSSGLVPRG---SHKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVE 63
Query: 77 RNTEISVSMMSCDGDTSDLGGLSYI 101
TE V +S ++ I
Sbjct: 64 PKTETYVEANMGLNPSSPNDPVTNI 88
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 40.2 bits (94), Expect = 5e-05
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 1/80 (1%)
Query: 22 CQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEDLERNTEI 81
RF+ +R+G + + S + K S L +
Sbjct: 29 SDFVRFRPPVREGPVTRSASRAASLHSLSDASSDSFNHSPESVDTKLNFSNL-LMMYQDS 87
Query: 82 SVSMMSCDGDTSDLGGLSYI 101
S + S L L ++
Sbjct: 88 GSPDSSEEDQQSRLSMLPHL 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 7e-04
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 60 SQQWPPNKSIPS--LEDLERNTEISVS-MMSCDG-DTSDLGGLSYIKKECNLNNIQCSPS 115
+ PN S+P LED N E S M+S + Y+ K N P+
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV--QDYVNK-TN----SHLPA 362
Query: 116 SQRLY 120
+++
Sbjct: 363 GKQVE 367
Score = 31.6 bits (71), Expect = 0.062
Identities = 27/160 (16%), Positives = 40/160 (25%), Gaps = 77/160 (48%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGML--KEGVRLDRVRG------------G 48
EY A A A ++ + V + RG G
Sbjct: 1766 EYA--AL-----------ASLA---------DVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 49 RQKYR---RNPDLLSQQWPPNKSIPSLEDLER------------------NTE---ISVS 84
R Y NP ++ S S E L+ N E +
Sbjct: 1804 RSNYGMIAINPGRVA------ASF-SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 85 MMSCDGDTSDLGGLSYIKKECNLNNI-----QCSPSSQRL 119
GD L ++ + L I Q S S + +
Sbjct: 1857 -----GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 33.6 bits (77), Expect = 0.008
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPP------------NKSIPSLEDLERNTEIS 82
M KE VR DR + ++ ++ + ++ PSL L + T S
Sbjct: 1 MSKESVRNDRNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNS 60
Query: 83 VSMMSCDGDTSDLGGLS 99
+ D S
Sbjct: 61 SADHRVRLDLGLWDKFS 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.34
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 9/22 (40%)
Query: 101 IKKECNLNNIQCSPSSQRLYSP 122
+KK +Q +S +LY+
Sbjct: 22 LKK------LQ---ASLKLYAD 34
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl
enzyme, NTN hydrolase, acyltransferase, ornithine
acetyl transferase; 2.2A {Streptomyces clavuligerus}
PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Length = 213
Score = 28.6 bits (65), Expect = 0.38
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 75 LERNTEISVSMMSCDGDTS 93
R + + + +S D DTS
Sbjct: 21 FRRVMDRTFNAVSIDTDTS 39
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S
genomics, joint center for structural genomics, JCSG;
HET: MSE UNL; 2.00A {Bacillus halodurans}
Length = 215
Score = 28.2 bits (64), Expect = 0.51
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 75 LERNTEISVSMMSCDGDTS 93
L T + + ++ DGDTS
Sbjct: 21 LSAITNETFNRITVDGDTS 39
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN
five-stranded antiparallel beta-sheet, hydrolase; HET:
BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A*
1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Length = 322
Score = 25.4 bits (56), Expect = 5.1
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 43 DRVRGGRQKYRRNPDLLSQ 61
D V+ G + + D L++
Sbjct: 86 DNVQNGVVFWNQYEDALNR 104
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional
regulaator, strucutral genomics, protein structure
initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8
b.82.1.15
Length = 192
Score = 25.3 bits (56), Expect = 5.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 71 SLEDLERNTEISVSMMS 87
SL+ + T +S +M+
Sbjct: 26 SLDATAQLTGVSKAMLG 42
>4anr_A Soluble lytic transglycosylase B; lyase, EF-hand like motif,
peptidoglycan; 1.84A {Pseudomonas aeruginosa}
Length = 323
Score = 25.4 bits (56), Expect = 6.0
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 43 DRVRGGRQKYRRNPDLLSQ 61
R+ G + ++ + L++
Sbjct: 81 ARISRGVDFWNKHAEDLAR 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.407
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,837,117
Number of extensions: 94540
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 41
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)