RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy752
(123 letters)
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.8 bits (147), Expect = 4e-14
Identities = 43/53 (81%), Positives = 49/53 (92%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR 53
NIEY+CPA+N+CEI KRRRK+CQACRF K L+ GMLKEGVRLDRVRGGRQKY+
Sbjct: 38 NIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYK 90
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 57.4 bits (138), Expect = 9e-13
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNP 56
+ +Y C A+ DC ++KRRR CQ CRFQKCL GM+KE VR D ++G R + P
Sbjct: 34 SAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 89
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 53.0 bits (127), Expect = 4e-11
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 46
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R R
Sbjct: 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 51.6 bits (123), Expect = 2e-10
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
+TCP + DC I K R+ CQACR ++C+ GM+KE + D +++
Sbjct: 34 KALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKRE 84
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 51.1 bits (122), Expect = 2e-10
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49
+ Y C CE++ R+ CQ CR +KCL GM E V + +
Sbjct: 34 SAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMK 82
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 50.0 bits (119), Expect = 5e-10
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
C + +C I + R CQ CRF+KCL GM ++ VR R
Sbjct: 38 KRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGR 78
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 46.2 bits (109), Expect = 1e-08
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLD 43
N+ YTC +C INK R CQ CR QKC GM KE VR D
Sbjct: 33 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRND 75
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 45.1 bits (106), Expect = 4e-08
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKE 38
+Y C + NDC I+K RRK C +CR +KC GM
Sbjct: 36 KQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLG 73
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 42.4 bits (99), Expect = 4e-07
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKE 38
Y C C I+K RRK C ACR++KCL+ GM E
Sbjct: 34 QHNYLCKYEGKCIIDKIRRKNCPACRYRKCLQAGMNLE 71
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 42.9 bits (100), Expect = 5e-07
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRR 54
+ Y+C C I+K R CQ CRF+KC+ GM + V D R ++K
Sbjct: 37 HPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIE 90
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 42.0 bits (98), Expect = 6e-07
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLK 37
+ +Y CPA+N C I+K RRK+CQACR +KC GM+K
Sbjct: 38 HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 74
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 26.1 bits (57), Expect = 1.6
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 26 RFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWP-----PNKSIPSLEDLERNTE 80
+F + L +++ RV GR ++ + + P P+K ++ T
Sbjct: 968 QFTQALSDYLMQNPELKSRVLRGRSEWEKYGAGIIHNPPSLFDVPHKWYQGAQEAAIATR 1027
Query: 81 ISVSMM 86
++ M
Sbjct: 1028 EELAEM 1033
>d1v97a3 d.41.1.1 (A:537-694) Xanthine oxidase, domain 5 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 23.9 bits (51), Expect = 4.9
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 48 GRQKYRRNPDLLSQQWPPNKSIPSLEDLERNT 79
Q ++ P+ S++ + +P L + +
Sbjct: 20 NIQLFQEVPNGQSKEDTVGRPLPHLAAAMQAS 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.407
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,511
Number of extensions: 20155
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 20
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)