Query psy7520
Match_columns 402
No_of_seqs 282 out of 1693
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:28:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00075 RNase_H: RNase H; In 99.9 1.2E-22 2.6E-27 174.6 7.7 118 135-260 2-131 (132)
2 PRK08719 ribonuclease H; Revie 99.9 1.8E-21 3.9E-26 171.9 12.5 123 134-261 2-146 (147)
3 PRK06548 ribonuclease H; Provi 99.8 4.7E-21 1E-25 171.1 11.1 129 134-265 3-145 (161)
4 COG0328 RnhA Ribonuclease HI [ 99.8 1.5E-20 3.3E-25 165.5 9.9 127 136-263 3-146 (154)
5 PRK00203 rnhA ribonuclease H; 99.8 2.6E-20 5.6E-25 165.1 10.0 126 136-264 3-144 (150)
6 cd06222 RnaseH RNase H (RNase 99.8 1.7E-17 3.7E-22 138.3 13.9 123 138-260 1-130 (130)
7 KOG3752|consensus 99.7 3.7E-16 8E-21 153.2 11.2 129 134-262 210-365 (371)
8 PRK13907 rnhA ribonuclease H; 99.7 1.1E-15 2.4E-20 131.5 12.3 120 137-261 2-126 (128)
9 PRK07708 hypothetical protein; 99.5 4.6E-13 9.9E-18 125.7 13.4 127 134-264 71-210 (219)
10 PRK07238 bifunctional RNase H/ 99.4 5.6E-12 1.2E-16 127.5 13.5 124 136-264 2-134 (372)
11 PF13456 RVT_3: Reverse transc 99.1 2.1E-10 4.5E-15 90.9 7.1 85 172-260 1-85 (87)
12 PF13966 zf-RVT: zinc-binding 93.8 0.033 7.1E-07 44.4 1.7 27 339-365 54-83 (86)
13 PF05380 Peptidase_A17: Pao re 76.0 8.4 0.00018 34.2 6.4 53 135-189 80-143 (159)
14 PRK13859 type IV secretion sys 56.1 6.1 0.00013 28.4 1.0 10 1-10 1-10 (55)
15 PF05741 zf-nanos: Nanos RNA b 48.7 7.3 0.00016 28.6 0.5 19 345-363 34-54 (55)
16 KOG1812|consensus 47.6 37 0.0008 34.8 5.6 42 170-211 47-88 (384)
17 PF00336 DNA_pol_viral_C: DNA 39.6 33 0.00072 32.0 3.4 60 135-205 93-153 (245)
18 COG0296 GlgB 1,4-alpha-glucan 36.6 46 0.001 36.3 4.5 36 218-253 213-248 (628)
19 KOG1994|consensus 31.8 22 0.00048 33.6 1.0 32 319-364 228-262 (268)
20 PRK10933 trehalose-6-phosphate 27.9 1.4E+02 0.003 32.1 6.4 72 175-246 30-108 (551)
21 COG0295 Cdd Cytidine deaminase 25.7 4.5E+02 0.0097 22.9 8.1 77 148-235 26-105 (134)
22 PF13696 zf-CCHC_2: Zinc knuck 25.0 39 0.00084 22.0 1.0 17 344-363 8-26 (32)
23 KOG4602|consensus 24.9 30 0.00065 33.3 0.6 23 342-364 266-290 (318)
24 PRK05710 glutamyl-Q tRNA(Asp) 24.1 32 0.00069 34.1 0.7 36 15-58 228-263 (299)
25 PF12661 hEGF: Human growth fa 23.9 25 0.00054 18.0 -0.1 8 40-47 2-9 (13)
26 COG4566 TtrR Response regulato 23.1 2.4E+02 0.0051 26.3 6.0 66 179-247 15-89 (202)
27 PF12662 cEGF: Complement Clr- 21.5 37 0.00081 20.5 0.4 12 38-49 2-13 (24)
No 1
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.87 E-value=1.2e-22 Score=174.62 Aligned_cols=118 Identities=31% Similarity=0.356 Sum_probs=91.7
Q ss_pred CceEEEeccCccCC--CceEEEEeeCCEEEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcC--
Q psy7520 135 HFTPCYTDGSKSVN--GTSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSN-- 210 (402)
Q Consensus 135 ~~~~iyTDGS~~~~--~~G~gv~~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~-- 210 (402)
+.++||||||+..+ ..|+|+++..+......++ ..+++.||+.||..||+.+ . ...++|+|||+++++.+..
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~~~-~--~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALKAL-E--HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHHTH-S--TSEEEEEES-HHHHHHHHTHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHHHh-h--cccccccccHHHHHHHHHHhc
Confidence 47899999997643 3577776665555555666 8999999999999999944 3 4999999999999998877
Q ss_pred ---CCCCc----hHHHHHHHHHHHHHhCCceEEEEEcCCCCCC-CCChHHHHHhcCCC
Q psy7520 211 ---NTSDN----PIVAKISVTWRKLKDYGKTVSFLWCPSHSGI-AGNEFVDNAARNPV 260 (402)
Q Consensus 211 ---~~~~s----~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi-~gNE~AD~lAk~A~ 260 (402)
.+... ++..+|++.+ ..+..|.|+|||||+|+ .|||.||+|||+|+
T Consensus 78 ~~~~~~~~~~~~~i~~~i~~~~----~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 78 HGNGWKKTSNGRPIKNEIWELL----SRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp HHTTSBSCTSSSBHTHHHHHHH----HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhheeecc----ccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 33222 3555666533 55899999999999999 69999999999874
No 2
>PRK08719 ribonuclease H; Reviewed
Probab=99.86 E-value=1.8e-21 Score=171.89 Aligned_cols=123 Identities=24% Similarity=0.233 Sum_probs=94.7
Q ss_pred CCceEEEeccCccCCC-----ceEEEEeeC---CEE--EEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHH
Q psy7520 134 AHFTPCYTDGSKSVNG-----TSCAYSINN---LIV--LSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKS 203 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~~-----~G~gv~~~~---~~~--~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~s 203 (402)
.+.++||||||+..++ +|+|+++.. ... ....+....|+++||+.|+..||+.+... .+|+|||++
T Consensus 2 ~~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~y 77 (147)
T PRK08719 2 RASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDY 77 (147)
T ss_pred CceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHH
Confidence 3578999999997543 588886532 222 34445556899999999999999998653 489999999
Q ss_pred HHHHh--------cCCCCCc---hH-HHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCC
Q psy7520 204 ALTAL--------SNNTSDN---PI-VAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVN 261 (402)
Q Consensus 204 al~~l--------~~~~~~s---~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~ 261 (402)
+++.+ ++++..+ ++ -.++++.+..+.. ...|+|.|||||+|++|||.||+||++|+.
T Consensus 78 vi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 78 CVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred HHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 99998 4444332 22 3567777777765 467999999999999999999999999875
No 3
>PRK06548 ribonuclease H; Provisional
Probab=99.85 E-value=4.7e-21 Score=171.12 Aligned_cols=129 Identities=23% Similarity=0.284 Sum_probs=97.9
Q ss_pred CCceEEEeccCccCC--CceEEEEeeCCEEEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcC-
Q psy7520 134 AHFTPCYTDGSKSVN--GTSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSN- 210 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~--~~G~gv~~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~- 210 (402)
+..+.||||||+..+ ..|+|+++.+....... ....|+++|||.|++.||+.+.. ....|.|+|||+++++.+..
T Consensus 3 ~~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~-~~~~TNnraEl~Aii~aL~~~~~-~~~~v~I~TDS~yvi~~i~~W 80 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDENTWDSGG-WDIATNNIAELTAVRELLIATRH-TDRPILILSDSKYVINSLTKW 80 (161)
T ss_pred CCEEEEEEeeccCCCCCceEEEEEEeCCcEEccC-CCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeChHHHHHHHHHH
Confidence 345899999998854 47888876544222222 23689999999999999986643 34579999999999999993
Q ss_pred --------CCCC--chHH-HHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCCCC
Q psy7520 211 --------NTSD--NPIV-AKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHLP 265 (402)
Q Consensus 211 --------~~~~--s~i~-~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~~~ 265 (402)
+... .++. +++++.+..+..+ ..|+|.|||||+|++|||.||+||++|+.....
T Consensus 81 ~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~~~~ 145 (161)
T PRK06548 81 VYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAANNFST 145 (161)
T ss_pred HHHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 2222 2343 7777777777655 479999999999999999999999998865443
No 4
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.5e-20 Score=165.50 Aligned_cols=127 Identities=21% Similarity=0.184 Sum_probs=103.0
Q ss_pred ceEEEeccCccC--CCceEEEEeeC-C-EE-EEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcC
Q psy7520 136 FTPCYTDGSKSV--NGTSCAYSINN-L-IV-LSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSN 210 (402)
Q Consensus 136 ~~~iyTDGS~~~--~~~G~gv~~~~-~-~~-~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~ 210 (402)
.+.||||||+.. |..|+|++... . .. .+.... .+|++++|+.|++.||+.+.+.....|.|+|||+++++.|..
T Consensus 3 ~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~~ 81 (154)
T COG0328 3 KVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGITR 81 (154)
T ss_pred ceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHH
Confidence 589999999874 34788887652 2 22 344444 899999999999999999998888999999999999999984
Q ss_pred CCC---C--------ch-HHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCC
Q psy7520 211 NTS---D--------NP-IVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPH 263 (402)
Q Consensus 211 ~~~---~--------s~-i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~ 263 (402)
+.. . .| -.+++++.+.++..+...|.+.|||||.|.++||.||+||+.|+...
T Consensus 82 w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 82 WIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred HHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 311 1 12 24677887888888777999999999999999999999999998765
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.82 E-value=2.6e-20 Score=165.12 Aligned_cols=126 Identities=18% Similarity=0.161 Sum_probs=92.8
Q ss_pred ceEEEeccCccCC--CceEEEEee-CCEEEEE-ecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCC
Q psy7520 136 FTPCYTDGSKSVN--GTSCAYSIN-NLIVLST-SLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN 211 (402)
Q Consensus 136 ~~~iyTDGS~~~~--~~G~gv~~~-~~~~~~~-~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~ 211 (402)
.+.||||||+..+ ..|+|+++. ++....+ ......|+++|||.|+..||+.+.. ...+.|+|||+++++.|..+
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHH
Confidence 4899999998843 378887653 3322222 2234678999999999999998864 46799999999999999852
Q ss_pred --------CC-C--chH-HHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCCC
Q psy7520 212 --------TS-D--NPI-VAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHL 264 (402)
Q Consensus 212 --------~~-~--s~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~~ 264 (402)
+. . .++ -+++++.+..+... ..|.|.|||||+|++|||.||+||++|+....
T Consensus 81 ~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~-~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~~ 144 (150)
T PRK00203 81 IHGWKKNGWKTADKKPVKNVDLWQRLDAALKR-HQIKWHWVKGHAGHPENERCDELARAGAEEAT 144 (150)
T ss_pred HHHHHHcCCcccCCCccccHHHHHHHHHHhcc-CceEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 21 1 122 23455555555433 78999999999999999999999999876543
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.75 E-value=1.7e-17 Score=138.31 Aligned_cols=123 Identities=28% Similarity=0.270 Sum_probs=95.6
Q ss_pred EEEeccCccCC--CceEEEEeeC--CEEE--EEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCC
Q psy7520 138 PCYTDGSKSVN--GTSCAYSINN--LIVL--STSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN 211 (402)
Q Consensus 138 ~iyTDGS~~~~--~~G~gv~~~~--~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~ 211 (402)
.+|||||...+ ++|+|++... +... ........+++.+|+.|+..||+.+......++.|++||+.++..+.+.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999998865 5888887543 2222 1122257899999999999999999988889999999999999999987
Q ss_pred CC-CchHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCC
Q psy7520 212 TS-DNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPV 260 (402)
Q Consensus 212 ~~-~s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~ 260 (402)
.. .......++..+..+...+..++|.|||+|+|+.+|+.||.||++|.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 81 YEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred ccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 64 22233333444444556778999999999999999999999999874
No 7
>KOG3752|consensus
Probab=99.66 E-value=3.7e-16 Score=153.22 Aligned_cols=129 Identities=24% Similarity=0.215 Sum_probs=99.1
Q ss_pred CCceEEEeccCccCC-----CceEEEEeeC--CEEEEEecC-CcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHH
Q psy7520 134 AHFTPCYTDGSKSVN-----GTSCAYSINN--LIVLSTSLN-QVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSAL 205 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~-----~~G~gv~~~~--~~~~~~~l~-~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal 205 (402)
.+..++|||||+..+ .+|+||+..+ ....++.+. ..+++|+||+.|+..||+-+.+.+..+|+|.|||+.++
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i 289 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFI 289 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHH
Confidence 345899999998853 3899987543 345667774 78999999999999999999988888999999999999
Q ss_pred HHhcCCCC-----------Cch----H--HHHHHHHHHHHHh--CCceEEEEEcCCCCCCCCChHHHHHhcCCCCC
Q psy7520 206 TALSNNTS-----------DNP----I--VAKISVTWRKLKD--YGKTVSFLWCPSHSGIAGNEFVDNAARNPVNP 262 (402)
Q Consensus 206 ~~l~~~~~-----------~s~----i--~~~I~~~~~~l~~--~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~ 262 (402)
+.|+.+-. .++ + .+.....+..|.+ ++.+|.+.|||||.||.|||.||.+|++++..
T Consensus 290 ~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~~ 365 (371)
T KOG3752|consen 290 NSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGSTL 365 (371)
T ss_pred HHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhhhh
Confidence 99985431 111 1 1122222333332 46899999999999999999999999998544
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.65 E-value=1.1e-15 Score=131.47 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=94.2
Q ss_pred eEEEeccCccC--CCceEEEEeeCC--E-EEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCC
Q psy7520 137 TPCYTDGSKSV--NGTSCAYSINNL--I-VLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN 211 (402)
Q Consensus 137 ~~iyTDGS~~~--~~~G~gv~~~~~--~-~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~ 211 (402)
+.||||||... +..|+|+++.+. . ...+. ....+++.||+.|++.||+.+...+..++.|+|||+.++..+++.
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~-~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~ 80 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLP-LGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKE 80 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEec-ccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHH
Confidence 57999999874 348999876532 2 22222 246799999999999999999998888999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCC
Q psy7520 212 TSDNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVN 261 (402)
Q Consensus 212 ~~~s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~ 261 (402)
+....-.+.+++.+..+..+...+.|.|||. +.|+.||.+|++|..
T Consensus 81 ~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~ 126 (128)
T PRK13907 81 YAKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKAIL 126 (128)
T ss_pred HhcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHHHh
Confidence 6544444555555556666777888999996 599999999998864
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.48 E-value=4.6e-13 Score=125.71 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=94.1
Q ss_pred CCceEEEeccCcc--CCCceEEEEee---CCEEE----EEecCCcccchHHHHHHHHHHHHHhhhCCCCc--eEEEeccH
Q psy7520 134 AHFTPCYTDGSKS--VNGTSCAYSIN---NLIVL----STSLNQVVCVYSSELIAIHLCLEHLKFLPSSH--FLIISDSK 202 (402)
Q Consensus 134 ~~~~~iyTDGS~~--~~~~G~gv~~~---~~~~~----~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~--v~I~tDS~ 202 (402)
++.+++|+|||.. ++++|+|+++. ++... ...++...+++.||+.|++.||+.+...+... |.|++||+
T Consensus 71 p~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DSq 150 (219)
T PRK07708 71 PHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDSQ 150 (219)
T ss_pred CCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEeccH
Confidence 4579999999986 34588998753 22221 22455568999999999999999999876544 89999999
Q ss_pred HHHHHhcCCCCC-chHHHHHHHHHHHHH-hCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCCC
Q psy7520 203 SALTALSNNTSD-NPIVAKISVTWRKLK-DYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHL 264 (402)
Q Consensus 203 sal~~l~~~~~~-s~i~~~I~~~~~~l~-~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~~ 264 (402)
.+++.+.+.+.. ++..+.+.+.+..+. .-...+.|.||| ...|+.||+||++|.....
T Consensus 151 lVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al~~~~ 210 (219)
T PRK07708 151 VVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQALEGTV 210 (219)
T ss_pred HHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHHhcCC
Confidence 999999998753 344444444444333 234568889998 6789999999999997543
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.37 E-value=5.6e-12 Score=127.51 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=95.9
Q ss_pred ceEEEeccCccCC--CceEEEEeeC---CEE-E--EEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHH
Q psy7520 136 FTPCYTDGSKSVN--GTSCAYSINN---LIV-L--STSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTA 207 (402)
Q Consensus 136 ~~~iyTDGS~~~~--~~G~gv~~~~---~~~-~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~ 207 (402)
.+.||||||...+ .+|+|+++.+ +.. . ...++ .++++.||+.|++.||+.+.+.+..++.|++||+.+++.
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 3689999998854 4789987642 221 2 23334 678899999999999999999888899999999999999
Q ss_pred hcCCCC-CchHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCCC
Q psy7520 208 LSNNTS-DNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHL 264 (402)
Q Consensus 208 l~~~~~-~s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~~ 264 (402)
+.+.+. .++-...+.+.+..+..+...++|.|||. .+|+.||.||+.|.....
T Consensus 81 i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a~~~~~ 134 (372)
T PRK07238 81 MSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEAMDAAA 134 (372)
T ss_pred hCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHHHHhhc
Confidence 998764 33434444455556667778899999995 789999999999865543
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.10 E-value=2.1e-10 Score=90.86 Aligned_cols=85 Identities=21% Similarity=0.173 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCCCCCchHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChH
Q psy7520 172 VYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNNTSDNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEF 251 (402)
Q Consensus 172 v~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~~~~s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~ 251 (402)
+..||+.|+..||+.+.+.+..+|.|.|||+.++..+++..........+...+..+.+....+.|.||| ..+|..
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~ 76 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKV 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHH
Confidence 3579999999999999999999999999999999999988543223445555566677778999999999 889999
Q ss_pred HHHHhcCCC
Q psy7520 252 VDNAARNPV 260 (402)
Q Consensus 252 AD~lAk~A~ 260 (402)
||.|||.|.
T Consensus 77 A~~LA~~a~ 85 (87)
T PF13456_consen 77 ADALAKFAL 85 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999764
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=93.85 E-value=0.033 Score=44.38 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=22.3
Q ss_pred cCCCCCCCcc-cC-CCCCccccc-cccccH
Q psy7520 339 FKRTPPPSCR-CG-DPLTVLHIL-SCHLHA 365 (402)
Q Consensus 339 ~~~~~~p~C~-CG-~~eTv~HiL-~Cp~~~ 365 (402)
.+...++.|. |+ +.||++|+| .||...
T Consensus 54 r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 54 RGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred cCCccCCccccCCCccccccceeccCcCcc
Confidence 3446779999 99 599999999 999754
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=75.97 E-value=8.4 Score=34.19 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=33.0
Q ss_pred CceEEEeccCccCCCceEEEEee---CCEEE------EEecC--CcccchHHHHHHHHHHHHHhhh
Q psy7520 135 HFTPCYTDGSKSVNGTSCAYSIN---NLIVL------STSLN--QVVCVYSSELIAIHLCLEHLKF 189 (402)
Q Consensus 135 ~~~~iyTDGS~~~~~~G~gv~~~---~~~~~------~~~l~--~~~sv~~AEl~AI~~AL~~~~~ 189 (402)
..+++|+|+|.. +.|+.++.. ++... +.++. ...|+=+-||.|+..|.+++..
T Consensus 80 ~~L~~F~DAS~~--aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 80 VELHVFCDASES--AYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeeEeeccccc--ceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 368999999953 334443321 22111 11221 2458999999999999988864
No 14
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=56.12 E-value=6.1 Score=28.42 Aligned_cols=10 Identities=60% Similarity=1.265 Sum_probs=7.9
Q ss_pred CcchhhHHHH
Q psy7520 1 MKYCMLLVVL 10 (402)
Q Consensus 1 ~~~~~~~~~~ 10 (402)
||||.|++++
T Consensus 1 MKY~lL~l~l 10 (55)
T PRK13859 1 MKYCLLCLAL 10 (55)
T ss_pred CchhHHHHHH
Confidence 8999887654
No 15
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=48.67 E-value=7.3 Score=28.61 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=8.3
Q ss_pred CCcc-cCCCCCccccc-cccc
Q psy7520 345 PSCR-CGDPLTVLHIL-SCHL 363 (402)
Q Consensus 345 p~C~-CG~~eTv~HiL-~Cp~ 363 (402)
-.|+ ||+..+-.|.. +||+
T Consensus 34 y~Cp~CgAtGd~AHT~~yCP~ 54 (55)
T PF05741_consen 34 YVCPICGATGDNAHTIKYCPK 54 (55)
T ss_dssp ---TTT---GGG---GGG-TT
T ss_pred CcCCCCcCcCccccccccCcC
Confidence 3899 99999999999 9995
No 16
>KOG1812|consensus
Probab=47.61 E-value=37 Score=34.81 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=34.6
Q ss_pred ccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCC
Q psy7520 170 VCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN 211 (402)
Q Consensus 170 ~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~ 211 (402)
.+...||++|+..+|..+...+..++++++|+.-....+...
T Consensus 47 ~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~ 88 (384)
T KOG1812|consen 47 ITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGR 88 (384)
T ss_pred cchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhh
Confidence 678899999999999999999999999999966555544333
No 17
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=39.63 E-value=33 Score=32.04 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=37.8
Q ss_pred CceEEEeccCccCCCceEEEEeeCCE-EEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHH
Q psy7520 135 HFTPCYTDGSKSVNGTSCAYSINNLI-VLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSAL 205 (402)
Q Consensus 135 ~~~~iyTDGS~~~~~~G~gv~~~~~~-~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal 205 (402)
.--+||+|+.-. |.|+.+.++. ...|+ ..-.|.++|++|.-.|.-+. ..++ |.|||..++
T Consensus 93 ~lc~VfaDATpT----gwgi~i~~~~~~~Tfs--~~l~IhtaELlaaClAr~~~----~~r~-l~tDnt~Vl 153 (245)
T PF00336_consen 93 GLCQVFADATPT----GWGISITGQRMRGTFS--KPLPIHTAELLAACLARLMS----GARC-LGTDNTVVL 153 (245)
T ss_pred CCCceeccCCCC----cceeeecCceeeeeec--ccccchHHHHHHHHHHHhcc----CCcE-EeecCcEEE
Confidence 356899998753 5555443332 22232 23568899999997776544 3444 899998665
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=36.59 E-value=46 Score=36.32 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHH
Q psy7520 218 VAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVD 253 (402)
Q Consensus 218 ~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD 253 (402)
-...+..+....+.|+.|-+=|||+|.+..||-.+-
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~ 248 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLAR 248 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhh
Confidence 456777777889999999999999999999988764
No 19
>KOG1994|consensus
Probab=31.79 E-value=22 Score=33.59 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.3
Q ss_pred hHhhhhhhccCCCccccccccCCCCCCCcc-cC-CCCCccccc-ccccc
Q psy7520 319 EEVVICRMRIGHTRATHSFLFKRTPPPSCR-CG-DPLTVLHIL-SCHLH 364 (402)
Q Consensus 319 ~~~~L~qlRTGH~~l~h~~r~~~~~~p~C~-CG-~~eTv~HiL-~Cp~~ 364 (402)
...++.-||.||. .|- || ...|.+-++ +||--
T Consensus 228 lt~in~~LR~eh~--------------YC~fCG~~y~~~edl~ehCPGv 262 (268)
T KOG1994|consen 228 LTKINIFLRSEHY--------------YCFFCGIKYKDEEDLYEHCPGV 262 (268)
T ss_pred HHHHHHHHhccce--------------EEEEeccccCCHHHHHHhCCCC
Confidence 3456667788772 577 99 699999999 99954
No 20
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=27.93 E-value=1.4e+02 Score=32.11 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhhCCCCceEEEe-------ccHHHHHHhcCCCCCchHHHHHHHHHHHHHhCCceEEEEEcCCCCCC
Q psy7520 175 SELIAIHLCLEHLKFLPSSHFLIIS-------DSKSALTALSNNTSDNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGI 246 (402)
Q Consensus 175 AEl~AI~~AL~~~~~~~~~~v~I~t-------DS~sal~~l~~~~~~s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi 246 (402)
+.+.||...|.++...+...|.+-- |+-+.+.-.......=+...++...+..++++|+.|.+-.|+.|++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 3578888889888887666555521 11111111101111112346677777889999999999999999976
No 21
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=25.71 E-value=4.5e+02 Score=22.90 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=46.5
Q ss_pred CCceEEEEeeCCEE-EEEecC--CcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCCCCCchHHHHHHHH
Q psy7520 148 NGTSCAYSINNLIV-LSTSLN--QVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNNTSDNPIVAKISVT 224 (402)
Q Consensus 148 ~~~G~gv~~~~~~~-~~~~l~--~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~~~~s~i~~~I~~~ 224 (402)
-.+|+++..+++.. ...-+. +..--.-||-.||..|+.. -......+.+++|+ ..+..+.+.-|+...
T Consensus 26 F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~-------~~~~sPCG~CRQ~i~- 96 (134)
T COG0295 26 FKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADT-------GKPVSPCGACRQVLA- 96 (134)
T ss_pred CcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCC-------CCCcCCcHHHHHHHH-
Confidence 35888887666533 233332 2233345999999999876 33345778899998 333445566666554
Q ss_pred HHHHHhCCceE
Q psy7520 225 WRKLKDYGKTV 235 (402)
Q Consensus 225 ~~~l~~~~~~V 235 (402)
++......|
T Consensus 97 --Ef~~~d~~i 105 (134)
T COG0295 97 --EFCGDDTLI 105 (134)
T ss_pred --HhcCCCceE
Confidence 555444444
No 22
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=25.02 E-value=39 Score=22.02 Aligned_cols=17 Identities=29% Similarity=0.725 Sum_probs=12.9
Q ss_pred CCCcc-cCCCCCccccc-cccc
Q psy7520 344 PPSCR-CGDPLTVLHIL-SCHL 363 (402)
Q Consensus 344 ~p~C~-CG~~eTv~HiL-~Cp~ 363 (402)
+-.|. |+... |++ .||.
T Consensus 8 ~Y~C~~C~~~G---H~i~dCP~ 26 (32)
T PF13696_consen 8 GYVCHRCGQKG---HWIQDCPT 26 (32)
T ss_pred CCEeecCCCCC---ccHhHCCC
Confidence 34688 88654 999 9996
No 23
>KOG4602|consensus
Probab=24.85 E-value=30 Score=33.30 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.6
Q ss_pred CCCCCcc-cCCCCCccccc-ccccc
Q psy7520 342 TPPPSCR-CGDPLTVLHIL-SCHLH 364 (402)
Q Consensus 342 ~~~p~C~-CG~~eTv~HiL-~Cp~~ 364 (402)
-.+-.|+ ||...+-.|.+ +||.-
T Consensus 266 LR~YVCPiCGATgDnAHTiKyCPl~ 290 (318)
T KOG4602|consen 266 LRSYVCPICGATGDNAHTIKYCPLA 290 (318)
T ss_pred HhhhcCccccccCCcccceeccccc
Confidence 3456899 99999999999 99964
No 24
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=24.10 E-value=32 Score=34.06 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=28.9
Q ss_pred HHHHHHhhhhhhccCCccccCccccccccCCCcchHHHHHHHhc
Q psy7520 15 LLVEHEYKKMSKAKGDLSLDLDQLDCACKNGFCPASRYEQFISG 58 (402)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (402)
+++..+.+||||.+|+.+++- +|+.|+...+..+-|
T Consensus 228 ll~~~~g~kLSKr~~~~~i~~--------~g~~p~l~~~l~~lG 263 (299)
T PRK05710 228 LVLNADGQKLSKQNGAPALDA--------AGPLPVLAAALRFLG 263 (299)
T ss_pred cccCCCCCcccccCCccchhh--------cCcCHHHHHHHHHcC
Confidence 566778899999999998764 799999766666654
No 25
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=23.93 E-value=25 Score=18.04 Aligned_cols=8 Identities=38% Similarity=1.290 Sum_probs=5.9
Q ss_pred ccccCCCc
Q psy7520 40 CACKNGFC 47 (402)
Q Consensus 40 ~~~~~~~~ 47 (402)
|.|+.||+
T Consensus 2 C~C~~G~~ 9 (13)
T PF12661_consen 2 CQCPPGWT 9 (13)
T ss_dssp EEE-TTEE
T ss_pred ccCcCCCc
Confidence 88999886
No 26
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=23.08 E-value=2.4e+02 Score=26.29 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhCCCCceEEEeccHHHHHHhcCCCCCc--------hH-HHHHHHHHHHHHhCCceEEEEEcCCCCCCC
Q psy7520 179 AIHLCLEHLKFLPSSHFLIISDSKSALTALSNNTSDN--------PI-VAKISVTWRKLKDYGKTVSFLWCPSHSGIA 247 (402)
Q Consensus 179 AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~~~~s--------~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~ 247 (402)
++..||.++..+.+-.+..|++.+.-+.......+.. ++ -.++++ .|...+...-+.++-||.+|+
T Consensus 15 ~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~---~L~~~~~~~PVIfiTGhgDIp 89 (202)
T COG4566 15 SVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQD---RLAERGIRLPVIFLTGHGDIP 89 (202)
T ss_pred HHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHH---HHHhcCCCCCEEEEeCCCChH
Confidence 5778888888888889999999998887743333221 11 234444 677788888889999999987
No 27
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=21.47 E-value=37 Score=20.53 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=9.2
Q ss_pred ccccccCCCcch
Q psy7520 38 LDCACKNGFCPA 49 (402)
Q Consensus 38 ~~~~~~~~~~~~ 49 (402)
..|.|+.||..+
T Consensus 2 y~C~C~~Gy~l~ 13 (24)
T PF12662_consen 2 YTCSCPPGYQLS 13 (24)
T ss_pred EEeeCCCCCcCC
Confidence 369999999743
Done!