Query psy7520
Match_columns 402
No_of_seqs 282 out of 1693
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:28:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.9 1.1E-22 3.8E-27 179.1 11.4 126 132-262 8-147 (150)
2 2qkb_A Ribonuclease H1, HS-RNA 99.9 7.4E-23 2.5E-27 180.6 10.0 129 134-263 5-152 (154)
3 2kq2_A Ribonuclease H-related 99.9 3.4E-23 1.2E-27 181.6 4.4 129 133-265 3-140 (147)
4 3h08_A RNH (ribonuclease H); R 99.9 2.9E-22 1E-26 175.0 7.6 124 135-262 3-144 (146)
5 1jl1_A Ribonuclease HI; RNAse 99.8 2.2E-21 7.7E-26 171.4 8.5 126 135-264 3-145 (155)
6 3p1g_A Xenotropic murine leuke 99.8 3.6E-21 1.2E-25 172.0 9.7 125 136-264 23-158 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.8 2.4E-21 8.1E-26 171.8 8.1 124 135-262 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 4E-21 1.4E-25 171.8 5.1 126 135-264 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.8 2.7E-19 9.4E-24 159.7 8.8 126 135-261 6-162 (165)
10 3hst_B Protein RV2228C/MT2287; 99.8 1.4E-18 4.8E-23 149.8 11.4 122 136-262 3-133 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 1.6E-18 5.5E-23 148.8 10.0 122 135-261 2-136 (140)
12 2zd1_A Reverse transcriptase/r 99.8 1.6E-18 5.6E-23 182.2 11.3 117 134-259 437-557 (557)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 2.1E-18 7E-23 181.4 11.9 118 134-260 434-555 (555)
14 2ehg_A Ribonuclease HI; RNAse 99.7 1.6E-17 5.5E-22 145.2 10.4 122 137-263 2-135 (149)
15 1zbf_A Ribonuclease H-related 99.2 4.6E-12 1.6E-16 110.1 4.4 117 134-254 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.0 1.2E-09 4.2E-14 93.5 9.1 76 134-211 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 80.1 0.6 2.1E-05 47.0 1.8 74 135-211 345-428 (455)
18 3alr_A Nanos protein; zinc-fin 58.8 4 0.00014 32.6 1.7 25 345-369 72-98 (106)
19 2zd1_B P51 RT; P51/P66, hetero 33.0 68 0.0023 31.6 6.5 67 136-205 324-400 (428)
20 2fr5_A Cytidine deaminase; tet 21.4 1.3E+02 0.0043 25.3 5.1 54 148-202 36-92 (146)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.88 E-value=1.1e-22 Score=179.08 Aligned_cols=126 Identities=23% Similarity=0.275 Sum_probs=95.5
Q ss_pred hcCCceEEEeccCccCC--CceEEEEeeCCEEEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhc
Q psy7520 132 KYAHFTPCYTDGSKSVN--GTSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALS 209 (402)
Q Consensus 132 ~~~~~~~iyTDGS~~~~--~~G~gv~~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~ 209 (402)
+..+.+.||||||+..+ ..|+|+++.++......+ ..+|+++||+.|+..||+.+ ..+|.|+|||+++++.|.
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIT 82 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHH
Confidence 45678999999998744 378888765543333344 47899999999999999985 488999999999999998
Q ss_pred CCC-----------CCchH-HHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCC
Q psy7520 210 NNT-----------SDNPI-VAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNP 262 (402)
Q Consensus 210 ~~~-----------~~s~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~ 262 (402)
.+. ...++ -+++++.+..+..++..|.|.|||||+|++|||.||+||++|+..
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 751 11111 234444443333467899999999999999999999999999875
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.88 E-value=7.4e-23 Score=180.57 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=99.8
Q ss_pred CCceEEEeccCccCCC-----ceEEEEeeCC--EEEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHH
Q psy7520 134 AHFTPCYTDGSKSVNG-----TSCAYSINNL--IVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALT 206 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~~-----~G~gv~~~~~--~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~ 206 (402)
.+.+.||||||+..++ +|+|+++..+ ...+..++..+|++.||+.|+..||+.+...+..+|.|+|||+++++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 4678999999987542 6888876432 22345665578999999999999999998877789999999999999
Q ss_pred HhcCC--------CC-Cc--h-HHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCC
Q psy7520 207 ALSNN--------TS-DN--P-IVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPH 263 (402)
Q Consensus 207 ~l~~~--------~~-~s--~-i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~ 263 (402)
.|.++ +. .+ + ..+.+++.+..+.. +..|.|.|||||+|++|||.||+||++|+..+
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 99873 11 11 1 12344554544544 46799999999999999999999999998764
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.87 E-value=3.4e-23 Score=181.63 Aligned_cols=129 Identities=17% Similarity=0.103 Sum_probs=100.8
Q ss_pred cCCceEEEeccCccCCCceEEEEee-CCEEE--EE-ec--CC--cccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHH
Q psy7520 133 YAHFTPCYTDGSKSVNGTSCAYSIN-NLIVL--ST-SL--NQ--VVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSA 204 (402)
Q Consensus 133 ~~~~~~iyTDGS~~~~~~G~gv~~~-~~~~~--~~-~l--~~--~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sa 204 (402)
+.+.+.||||||+..+.+|+|+++. ++... +. .. +. .+++++||+.|+..||+.+.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 3567999999999986799998763 44332 33 22 22 369999999999999998877666 99999999998
Q ss_pred HHHhcCCCCCc-hHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCCCC
Q psy7520 205 LTALSNNTSDN-PIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHLP 265 (402)
Q Consensus 205 l~~l~~~~~~s-~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~~~ 265 (402)
.+.+.+.+..+ +....+.+.++.+.. .|.|.|||||+|++|||.||+||++|+.....
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 88888766544 344555555555533 89999999999999999999999999887654
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.86 E-value=2.9e-22 Score=175.01 Aligned_cols=124 Identities=23% Similarity=0.146 Sum_probs=91.0
Q ss_pred CceEEEeccCccCCC--ceEEEEee-CCEEE--EEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhc
Q psy7520 135 HFTPCYTDGSKSVNG--TSCAYSIN-NLIVL--STSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALS 209 (402)
Q Consensus 135 ~~~~iyTDGS~~~~~--~G~gv~~~-~~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~ 209 (402)
+.++||||||+..++ +|+|+++. ++... +..+ ..+|++.||+.|+..||+.+.+ ..+|.|+|||+++++.|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 468999999988643 78887753 33322 2333 3689999999999999999975 589999999999999998
Q ss_pred CCC---------C---Cch-HHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCC
Q psy7520 210 NNT---------S---DNP-IVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNP 262 (402)
Q Consensus 210 ~~~---------~---~s~-i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~ 262 (402)
..+ . ..+ ..+.+++.+..+... ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 721 1 111 123344444444333 579999999999999999999999988753
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.84 E-value=2.2e-21 Score=171.41 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=95.2
Q ss_pred CceEEEeccCccCC--CceEEEEee-CCEE--EEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhc
Q psy7520 135 HFTPCYTDGSKSVN--GTSCAYSIN-NLIV--LSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALS 209 (402)
Q Consensus 135 ~~~~iyTDGS~~~~--~~G~gv~~~-~~~~--~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~ 209 (402)
..+.||||||+..+ .+|+|+++. ++.. .+..+ ..+|++.||+.|+..||+.+.. ..+|.|+|||+++++.|.
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 36899999999854 378888754 3322 23333 3678999999999999999875 379999999999999999
Q ss_pred CC--------CC-C--chH-HHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCCC
Q psy7520 210 NN--------TS-D--NPI-VAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHL 264 (402)
Q Consensus 210 ~~--------~~-~--s~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~~ 264 (402)
.+ +. . .++ -..+++.+..+.. ...|.|.|||||+|++|||.||+||++|+..+.
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 72 21 1 121 1344554555544 469999999999999999999999999987754
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.84 E-value=3.6e-21 Score=171.98 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=92.1
Q ss_pred ceEEEeccCcc--CCCceEEEEee-C-CEEEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCC
Q psy7520 136 FTPCYTDGSKS--VNGTSCAYSIN-N-LIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN 211 (402)
Q Consensus 136 ~~~iyTDGS~~--~~~~G~gv~~~-~-~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~ 211 (402)
.+.||||||+. ++..|+|+++. + .......+...+|+++||+.|+..||+.+ ....+.|+|||+++++.+-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 58999999987 34478887543 3 33333345567899999999999999998 368999999999999988322
Q ss_pred CCCchH-HHHHHHHH-HHHHhCCceEEEEEcCCCCC-----CCCChHHHHHhcCCCCCCC
Q psy7520 212 TSDNPI-VAKISVTW-RKLKDYGKTVSFLWCPSHSG-----IAGNEFVDNAARNPVNPHL 264 (402)
Q Consensus 212 ~~~s~i-~~~I~~~~-~~l~~~~~~V~~~WVPgH~G-----i~gNE~AD~lAk~A~~~~~ 264 (402)
....++ -++++..+ ..+ ..+..|.|+|||||+| ++|||.||+||++|+....
T Consensus 100 ~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 222221 12333322 233 3578999999999999 9999999999999886543
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.84 E-value=2.4e-21 Score=171.83 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=93.7
Q ss_pred CceEEEeccCccCC--CceEEEEee-CCEEE--EEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhc
Q psy7520 135 HFTPCYTDGSKSVN--GTSCAYSIN-NLIVL--STSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALS 209 (402)
Q Consensus 135 ~~~~iyTDGS~~~~--~~G~gv~~~-~~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~ 209 (402)
..+.||||||+..+ .+|+|+++. ++... +..+ ..+|++.||+.|+..||+.+.. ...|.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 46899999999854 378898753 43322 2333 3578999999999999999864 389999999999999998
Q ss_pred C--------CCCC---chH-HHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCC
Q psy7520 210 N--------NTSD---NPI-VAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNP 262 (402)
Q Consensus 210 ~--------~~~~---s~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~ 262 (402)
. .+.. .++ -..+++.+..+.. +..|.|.|||||+|++|||.||+||++|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 3211 111 2344444444544 3699999999999999999999999999876
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.82 E-value=4e-21 Score=171.82 Aligned_cols=126 Identities=21% Similarity=0.159 Sum_probs=94.3
Q ss_pred CceEEEeccCccCC--CceEEEEee-CCE--EEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhc
Q psy7520 135 HFTPCYTDGSKSVN--GTSCAYSIN-NLI--VLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALS 209 (402)
Q Consensus 135 ~~~~iyTDGS~~~~--~~G~gv~~~-~~~--~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~ 209 (402)
..+.||||||+..+ .+|+|+++. ++. ..+... ..+|++.||+.|++.||+.+... ..|.|+|||+++++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 57899999999854 378898763 322 122222 36789999999999999988653 58999999999999999
Q ss_pred C----------CCCCc--hH-HHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCCC
Q psy7520 210 N----------NTSDN--PI-VAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHL 264 (402)
Q Consensus 210 ~----------~~~~s--~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~~ 264 (402)
+ +...+ ++ ...+++.+..+... ..|.|.|||||+|++|||.||+||++|+....
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-HRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT-SEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc-CeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 8 21111 11 23445445455443 69999999999999999999999999988764
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.78 E-value=2.7e-19 Score=159.69 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=89.8
Q ss_pred CceEEEeccCccCC--C-----ceEEEEee--CC---EEEEEec-CCcccchHHHHHHHHHHHHHhhhCCCCceEEEecc
Q psy7520 135 HFTPCYTDGSKSVN--G-----TSCAYSIN--NL---IVLSTSL-NQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDS 201 (402)
Q Consensus 135 ~~~~iyTDGS~~~~--~-----~G~gv~~~--~~---~~~~~~l-~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS 201 (402)
..++||||||+..+ + +|+|+++. +. ....+.. .+..+.+.||+.|+..||+.+... ...|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeCh
Confidence 46899999998743 2 68998753 21 2233333 346788899999999999887764 4579999999
Q ss_pred HHHHHHhcCC--------CC---CchH-HHHHHHHHHHHHhCCceEEEEEcCCCCCC------CCChHHHHHhcCCCC
Q psy7520 202 KSALTALSNN--------TS---DNPI-VAKISVTWRKLKDYGKTVSFLWCPSHSGI------AGNEFVDNAARNPVN 261 (402)
Q Consensus 202 ~sal~~l~~~--------~~---~s~i-~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi------~gNE~AD~lAk~A~~ 261 (402)
+++++.+..+ +. ..++ -.++++.+..+......|.|.|||||+|+ +|||.||+||++|+.
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 9999999752 11 1122 23444444444444568999999999995 579999999998863
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.77 E-value=1.4e-18 Score=149.82 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=96.7
Q ss_pred ceEEEeccCccCC--CceEEEEeeC---C-EEE--EEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHH
Q psy7520 136 FTPCYTDGSKSVN--GTSCAYSINN---L-IVL--STSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTA 207 (402)
Q Consensus 136 ~~~iyTDGS~~~~--~~G~gv~~~~---~-~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~ 207 (402)
.+.||||||+..+ .+|+|+++.+ + ... ...+ ..+|++.||+.|++.||+.+...+..++.|+|||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 5799999998854 4788887532 2 222 2233 3789999999999999999998888999999999999999
Q ss_pred hcCCCC-CchHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCC
Q psy7520 208 LSNNTS-DNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNP 262 (402)
Q Consensus 208 l~~~~~-~s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~ 262 (402)
+.+.+. .++.+..+.+.+..+......|.|.|||+ ++|+.||+||++|+..
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 998653 44545556666667777779999999994 8999999999988643
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.76 E-value=1.6e-18 Score=148.81 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=93.0
Q ss_pred CceEEEeccCccCC--CceEEEEeeC--C-EE--EEEecCCcccchHHHHHHHHHHHHHhhhCCCC----ceEEEeccHH
Q psy7520 135 HFTPCYTDGSKSVN--GTSCAYSINN--L-IV--LSTSLNQVVCVYSSELIAIHLCLEHLKFLPSS----HFLIISDSKS 203 (402)
Q Consensus 135 ~~~~iyTDGS~~~~--~~G~gv~~~~--~-~~--~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~----~v~I~tDS~s 203 (402)
..+.||||||+..+ .+|+|+++.+ + .. ....++ .+|++.||+.|+..||+.+...+.. ++.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 35899999999754 4788987643 2 22 222333 5799999999999999999876666 9999999999
Q ss_pred HHHHhcCCCC-CchHHHHHHHHHHHH-HhCCceEEEEEcCCCCCCCCChHHHHHhcCCCC
Q psy7520 204 ALTALSNNTS-DNPIVAKISVTWRKL-KDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVN 261 (402)
Q Consensus 204 al~~l~~~~~-~s~i~~~I~~~~~~l-~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~ 261 (402)
+++.+.+.+. .++-+..+++.+..+ ..+...|.|.||| .++||.||+||++|+.
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAID 136 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHH
Confidence 9999999764 343334444445555 5555689999999 4899999999998864
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.75 E-value=1.6e-18 Score=182.24 Aligned_cols=117 Identities=26% Similarity=0.351 Sum_probs=90.2
Q ss_pred CCceEEEeccCccCC-C-ceEEEEeeCCEEEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCC
Q psy7520 134 AHFTPCYTDGSKSVN-G-TSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN 211 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~-~-~G~gv~~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~ 211 (402)
.+.+.||||||+..+ + +|+|+++.++....... ..+||+.||+.|++.||+.+ ..++.|+|||+++++.+.++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 456999999998743 3 67887765443333333 36899999999999999998 57899999999999999997
Q ss_pred CCC--chHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCC
Q psy7520 212 TSD--NPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNP 259 (402)
Q Consensus 212 ~~~--s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A 259 (402)
... .++.+++.+ .+.. ...|.|.|||||+|++|||.||+||++|
T Consensus 512 ~~~~~~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 512 PDKSESELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEESSHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CccCCHHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 654 345555544 3333 4689999999999999999999999986
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.75 E-value=2.1e-18 Score=181.40 Aligned_cols=118 Identities=23% Similarity=0.335 Sum_probs=92.5
Q ss_pred CCceEEEeccCccCCC--ceEEEEeeCCEEEEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHhcCC
Q psy7520 134 AHFTPCYTDGSKSVNG--TSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN 211 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~~--~G~gv~~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l~~~ 211 (402)
.+.+.||||||+..++ .|+|+++..+......+ ..+||+.||+.|++.||+. ...++.|+|||+++++.+.++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 4569999999987543 68888765432333333 3688999999999999997 468999999999999999986
Q ss_pred CCC--chHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCC
Q psy7520 212 TSD--NPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPV 260 (402)
Q Consensus 212 ~~~--s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~ 260 (402)
... .++.+++.+ .+ ..+..|.|.|||||+|++|||.||+||++|+
T Consensus 509 ~~~~~~~l~~~~~~---~~-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 509 PTESESKIVNQIIE---EM-IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSEESCHHHHHHHH---HH-HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHH---Hh-ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 533 345555444 22 2367899999999999999999999999985
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.72 E-value=1.6e-17 Score=145.16 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=91.4
Q ss_pred eEEEeccCcc-C--CCceE-EEEee-C-CEEEEE--ecC---CcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHH
Q psy7520 137 TPCYTDGSKS-V--NGTSC-AYSIN-N-LIVLST--SLN---QVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSAL 205 (402)
Q Consensus 137 ~~iyTDGS~~-~--~~~G~-gv~~~-~-~~~~~~--~l~---~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal 205 (402)
+.||||||+. . +++|+ |+++. + .....+ .++ ..+|++.||+.|+..||+.+...+..++.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999987 2 44785 87653 3 332222 223 37899999999999999999987788999999999999
Q ss_pred HHhcCCCCC-chHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHHHhcCCCCCC
Q psy7520 206 TALSNNTSD-NPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPH 263 (402)
Q Consensus 206 ~~l~~~~~~-s~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~lAk~A~~~~ 263 (402)
+.+.+++.. ++....+++.+..+.... .|.|.|||+ ++|+.||+||++|+...
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 999998643 233444444444444433 599999998 49999999999887653
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.22 E-value=4.6e-12 Score=110.08 Aligned_cols=117 Identities=18% Similarity=0.013 Sum_probs=84.1
Q ss_pred CCceEEEeccCccCC--CceEEEEee-CCEEEEE--ecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHh
Q psy7520 134 AHFTPCYTDGSKSVN--GTSCAYSIN-NLIVLST--SLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTAL 208 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~--~~G~gv~~~-~~~~~~~--~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l 208 (402)
.+.+.||||||+..+ .+|+|+++. ++..... .++ .+|++.||+.|++.||+.+.+... ++.|+|||+.++..+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 457899999998743 478998764 3322222 222 578999999999999999988666 999999999999999
Q ss_pred cCCCCC-----c----hHHHHHHHHHHHHHhCCceEEEEEcCCCCCCCCChHHHH
Q psy7520 209 SNNTSD-----N----PIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDN 254 (402)
Q Consensus 209 ~~~~~~-----s----~i~~~I~~~~~~l~~~~~~V~~~WVPgH~Gi~gNE~AD~ 254 (402)
.+.... . .+.+.|..+..-++. ..++...|.-|++.-||..||.
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 987621 1 133444333333443 3556677888888899999983
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.99 E-value=1.2e-09 Score=93.54 Aligned_cols=76 Identities=17% Similarity=0.053 Sum_probs=57.0
Q ss_pred CCceEEEeccCccCC--CceEE-EEeeCCE-E-EEEecCCcccchHHHHHHHHHHHHHhhhCCCCceEEEeccHHHHHHh
Q psy7520 134 AHFTPCYTDGSKSVN--GTSCA-YSINNLI-V-LSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTAL 208 (402)
Q Consensus 134 ~~~~~iyTDGS~~~~--~~G~g-v~~~~~~-~-~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~sal~~l 208 (402)
++...||||||+..+ ..|+| |+..++. . ....++ .+|+++||+.|++.||+.+.+.+. ++.|+|||++++..+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~-~v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCC-CEEEEcchHHHHHHH
Confidence 346789999998744 37885 4444332 2 233333 789999999999999999987543 489999999999999
Q ss_pred cCC
Q psy7520 209 SNN 211 (402)
Q Consensus 209 ~~~ 211 (402)
.+.
T Consensus 81 ~~~ 83 (134)
T 4htu_A 81 KDK 83 (134)
T ss_dssp HHT
T ss_pred HcC
Confidence 875
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=80.06 E-value=0.6 Score=47.00 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=47.0
Q ss_pred CceEEEeccCccCCCceEEEEeeC-C--E---EEEEecC---CcccchHHHHHHHHHHHHHhhhC-CCCceEEEeccHHH
Q psy7520 135 HFTPCYTDGSKSVNGTSCAYSINN-L--I---VLSTSLN---QVVCVYSSELIAIHLCLEHLKFL-PSSHFLIISDSKSA 204 (402)
Q Consensus 135 ~~~~iyTDGS~~~~~~G~gv~~~~-~--~---~~~~~l~---~~~sv~~AEl~AI~~AL~~~~~~-~~~~v~I~tDS~sa 204 (402)
....+|||+|.. ++|+...... + . ..+..+. ...+++..|++||..|++..... .+..++|+||+. +
T Consensus 345 ~~~~l~~DAS~~--~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~ 421 (455)
T 1rw3_A 345 KPFELFVDEKQG--YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-V 421 (455)
T ss_dssp CTTSCEEEEEEC--SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-T
T ss_pred CcEEEEEeccCC--cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-H
Confidence 356899999843 3332222221 1 1 1122232 35677889999999999888653 567999999996 6
Q ss_pred HHHhcCC
Q psy7520 205 LTALSNN 211 (402)
Q Consensus 205 l~~l~~~ 211 (402)
+..+.+.
T Consensus 422 ~~~l~~~ 428 (455)
T 1rw3_A 422 EALVKQP 428 (455)
T ss_dssp TTTSSST
T ss_pred HHHhCCC
Confidence 6666554
No 18
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=58.80 E-value=4 Score=32.57 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCcc-cCCCCCccccc-cccccHHHhh
Q psy7520 345 PSCR-CGDPLTVLHIL-SCHLHANIRA 369 (402)
Q Consensus 345 p~C~-CG~~eTv~HiL-~Cp~~~~~R~ 369 (402)
-.|+ ||+..+-.|.+ +||+......
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~ 98 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYC 98 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccC
Confidence 4799 99999999999 9998876554
No 19
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=33.00 E-value=68 Score=31.63 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=40.0
Q ss_pred ceEEEeccCccCCCceEEEEe--eC-CEEEEEec--CCcccchHHHHHH-HHHHHHHhhh----CCCCceEEEeccHHHH
Q psy7520 136 FTPCYTDGSKSVNGTSCAYSI--NN-LIVLSTSL--NQVVCVYSSELIA-IHLCLEHLKF----LPSSHFLIISDSKSAL 205 (402)
Q Consensus 136 ~~~iyTDGS~~~~~~G~gv~~--~~-~~~~~~~l--~~~~sv~~AEl~A-I~~AL~~~~~----~~~~~v~I~tDS~sal 205 (402)
.+.++||+|.. + ++|++. .+ ....+.++ ......+.-|++| |..||+.... .....++++||.+...
T Consensus 324 ~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~ 400 (428)
T 2zd1_B 324 DLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET 400 (428)
T ss_dssp CCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHH
T ss_pred CEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHH
Confidence 57999999953 2 223332 22 22333333 2344455677777 9999976543 3456678899998643
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=21.43 E-value=1.3e+02 Score=25.28 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=34.3
Q ss_pred CCceEEEEeeCCEEE-EEecC--CcccchHHHHHHHHHHHHHhhhCCCCceEEEeccH
Q psy7520 148 NGTSCAYSINNLIVL-STSLN--QVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSK 202 (402)
Q Consensus 148 ~~~G~gv~~~~~~~~-~~~l~--~~~sv~~AEl~AI~~AL~~~~~~~~~~v~I~tDS~ 202 (402)
..+|++++..++... ...+. ......-||..||..|... -......+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 358988875554433 33332 2223466999999999875 233457788888853
Done!