RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7520
(402 letters)
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 52.5 bits (126), Expect = 2e-08
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 17/130 (13%)
Query: 140 YTDGSKSVN----GTSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHF 195
YTDGS + A + ++ + +L +ELIA+ L+ +
Sbjct: 27 YTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE---GKKL 83
Query: 196 LIISDSKSALTALSNNTSDNPIVAKISVTWRKLKDY---GKTVSFLWCPSHSG-----IA 247
+ +DS+ A ++ I K L K +S + CP H
Sbjct: 84 NVYTDSRYAFATAHVHSEGREI--KNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEAR 141
Query: 248 GNEFVDNAAR 257
GN D AAR
Sbjct: 142 GNRMADQAAR 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 60/324 (18%), Positives = 96/324 (29%), Gaps = 102/324 (31%)
Query: 41 ACKNGFCPASRYEQFISGKGGLPQGHPDSLLGPPFL--LASPLFLKTIFLPYIKPLPPWS 98
A G A F GG QG+ D + L L+ + + L
Sbjct: 148 AVGEG--NAQLVAIF----GG--QGNTDD-----YFEELRD-LY--QTYHVLVGDL---- 187
Query: 99 FDVPTFDNSLGSDKKDNISSVAFQQHFRDLL-YSKYAHFTP--CYTDGSKSVNGTSCAYS 155
+ +L + + + ++L + + TP Y S S
Sbjct: 188 --IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL--------SIPIS 237
Query: 156 INNLIVLSTSLNQ--VVCV---YSSELIAIHLC--LEHLKFLPSSHFLIISDS------- 201
LI + L V ++ + +L H + L ++ + +DS
Sbjct: 238 CP-LIGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 202 -KSALTAL----------SNNTSDNPIVAKISVTWRKLKDYGKTVSFLWCPSH----SGI 246
+ A+T L NTS P + + S+ + + V PS S +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL------ENNEGV-----PSPMLSISNL 344
Query: 247 AGNEFVDNAARNPVNPHLP--------LK-------LC-SPLDLKPFAAKLTKTKWQALW 290
E V + N HLP L + P L L K K +
Sbjct: 345 T-QEQVQDYVNK-TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 291 DTLPIPNKLKRVKPVIEDWGSSNR 314
D IP +R K SNR
Sbjct: 403 DQSRIPFS-ER-KLKF-----SNR 419
Score = 42.0 bits (98), Expect = 3e-04
Identities = 39/210 (18%), Positives = 57/210 (27%), Gaps = 79/210 (37%)
Query: 24 MSKAKGDLSLDLDQLDCACK--NGFCPASRYEQ-FISGKGGLPQ-----GHPDSLLG--- 72
M L +Q+ N PA + Q IS G + G P SL G
Sbjct: 338 MLSISN---LTQEQVQDYVNKTNSHLPAGK--QVEISLVNG-AKNLVVSGPPQSLYGLNL 391
Query: 73 -------P--------PFLLASPLFLKTIFLP--------YIKP---------------L 94
P PF F FLP + P
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKF-SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 95 PPWSFDVPTFDNSLGSD---KKDNISSVAFQQHFRDLLY------SKYAH---FTPCYTD 142
+P +D GSD +IS R + K H F P
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 143 G-----SKSVNGTSCAYSINNLIVLSTSLN 167
G ++ +GT ++++ +L+
Sbjct: 511 GLGVLTHRNKDGTGVR------VIVAGTLD 534
Score = 38.9 bits (90), Expect = 0.003
Identities = 60/410 (14%), Positives = 116/410 (28%), Gaps = 152/410 (37%)
Query: 75 FLLASPLF-----LKTIFLPYIKPLPPWSFDVPTFDNSLGSDKKDNISSVA-----FQQH 124
L+ + F L+ F K LP PT +D D ++ A F +
Sbjct: 20 LLVPTASFFIASQLQEQFN---KILPE-----PT--EGFAAD--DEPTTPAELVGKFLGY 67
Query: 125 ------------FRDLLYSKYAHFTPCYTDG------------------SKSVNGTSCAY 154
F +L F CY +G K+
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 155 SINNLI------VLSTSLNQVVCVYSSELIAI-------HLCLEHLK--FLPSSHFL--I 197
+ + +++L + V +++L+AI E L+ + + +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 198 ISDSKSALTALSNNTSDNPIVAKISVTWRKLKDYGKTVSFL-WCPSHSGIAGNEFVDNAA 256
I S L+ L T D K + + ++ L W + S +++ +
Sbjct: 188 IKFSAETLSELIRTTLDAE------------KVFTQGLNILEWLENPSNTPDKDYLLSI- 234
Query: 257 RNPVNPHLPL----------KLCSPLDLKP--FAAKLTKTKWQALWDTLPIPNKLKRVKP 304
P++ PL L P + L + +
Sbjct: 235 --PIS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYL-----KGA---------TGHSQG 276
Query: 305 VI--------EDWGSSNRDNRYEEVVICRMR----IGHTRATHSFLFKRTPPPS------ 346
++ + W S + V + IG R ++ + PPS
Sbjct: 277 LVTAVAIAETDSWES------FFVSVRKAITVLFFIG-VRCYEAYP-NTSLPPSILEDSL 328
Query: 347 -CRCGDP---LTVLHILSCHLHANIR---ASLPTPPLLTDSPEGVDSLIN 389
G P L++ ++ + + + LP + SL+N
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP-----AGKQVEI-SLVN 372
Score = 32.3 bits (73), Expect = 0.33
Identities = 50/256 (19%), Positives = 78/256 (30%), Gaps = 95/256 (37%)
Query: 113 KDNISSVAFQQHF--------RDLLYSKYAHFTPCYTDGS-------KSVNGTSCAYSI- 156
+N ++ HF R+ YS T DG K +N S +Y+
Sbjct: 1666 INNPVNLTI--HFGGEKGKRIREN-YSAMIFETIV--DGKLKTEKIFKEINEHSTSYTFR 1720
Query: 157 --NNLIVLSTSLNQVVCVYSSELIAIHL----CLEHLKFLPSSHFLIISDSK-------- 202
L+ T Q A+ L E LK S LI +D+
Sbjct: 1721 SEKGLLSA-TQFTQP---------ALTLMEKAAFEDLK----SKGLIPADATFAGHSLGE 1766
Query: 203 -SALTALSN--NTSDNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNP 259
+AL +L++ + + ++ V +R G T+ P G A
Sbjct: 1767 YAALASLADVMSIES---LVEV-VFYR-----GMTMQVA-VPRDEL--GRSNYGMIA--- 1811
Query: 260 VNPHLPLKLCSPLDLKPFAAKLTK-TKWQALWDTLPIPNKLKRVKPVIEDWGSSNRDN-R 317
+NP S L+ ++ K T W V+ V N N
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWL--------------VEIV-------N-YNVE 1849
Query: 318 YEEVVICRMRIGHTRA 333
++ V G RA
Sbjct: 1850 NQQYVAA----GDLRA 1861
Score = 31.2 bits (70), Expect = 0.74
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 21/75 (28%)
Query: 346 SCRCGDPLTVLH------IL---SCHLHAN-IR----ASLPTPP---LLTDSPEGVDSLI 388
S R PLT+ H +L + A+ ++ LP P D P L+
Sbjct: 5 STR---PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 389 -NYLKAIDTRIYEQE 402
+L + + + +
Sbjct: 62 GKFLGYVSSLVEPSK 76
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 44.3 bits (105), Expect = 8e-06
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 140 YTDGSKSVNGTSCAYSI---------NNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFL 190
YTDGS + AY+ + + + + + V + E+ A ++ L
Sbjct: 10 YTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNV-AGEIAAALYAVKKASQL 68
Query: 191 PSSHFLIISDSKSALTALSNNTSDNPIVAKISVTWRKLKD-YGKTVSFLWCPSHSGIAGN 249
I+ D + + + + KL + Y SF +HSG N
Sbjct: 69 GVKI-RILHDYAGIAFWATGEWKAKN---EFTQAYAKLMNQYRGIYSFEKVKAHSGNEFN 124
Query: 250 EFVDNAAR 257
++VD A+
Sbjct: 125 DYVDMKAK 132
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 45.5 bits (108), Expect = 2e-05
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 159 LIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNN--TSDNP 216
++ L+ + NQ +EL AI+L L+ I++DS+ AL + S++
Sbjct: 468 VVPLTNTTNQ-----KTELQAIYLALQDSG----LEVNIVTDSQYALGIIQAQPDKSESE 518
Query: 217 IVAKISVTWRKLKDYGKTVSFL-WCPSHSGIAGNEFVD 253
+V +I +L K +L W P+H GI GNE VD
Sbjct: 519 LVNQII---EQLI--KKEKVYLAWVPAHKGIGGNEQVD 551
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 42.8 bits (101), Expect = 1e-04
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 23/123 (18%)
Query: 140 YTDGSKSVNGTS--CAYSINN----LIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSS 193
YTDGS + Y + + L + NQ +EL A + L
Sbjct: 440 YTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQ-----QAELEAFAMALTD----SGP 490
Query: 194 HFLIISDSKSALTALSN--NTSDNPIVAKISVTWRKLKDYGKTVSFL-WCPSHSGIAGNE 250
II DS+ + +++ S++ IV +I K K ++ W P+H GI GN+
Sbjct: 491 KVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIK-----KEAIYVAWVPAHKGIGGNQ 545
Query: 251 FVD 253
VD
Sbjct: 546 EVD 548
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 3e-04
Identities = 75/400 (18%), Positives = 120/400 (30%), Gaps = 122/400 (30%)
Query: 15 LLVEHEYKKMSKAKGDLSLDLDQL-DCACKNGF---CP---ASRYEQ---FISGKGG--L 62
LL Y+ L L L + + N F C +R++Q F+S +
Sbjct: 237 LLKSKPYENC------L-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 63 PQGHPDSLLGPPFLLASPLFLKTIFLPYIKPLPPWSFDV-P---------------TFDN 106
H L P + + L LK + + LP P T+DN
Sbjct: 290 SLDHHSMTLTPDEVKS--LLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 107 --SLGSDKKDNI--SSVA------FQQHFRDLLYSKYAHFTPCYTDGSKSVN-------- 148
+ DK I SS+ +++ F L + F P S +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-----SVF-P------PSAHIPTILLSL 394
Query: 149 -----GTSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCL-EHLKFLPSSHFLIISDSK 202
S + N + + + + + + +I+L L L+ + H I+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 203 SALTALSNNTSDNPIVAKISVTWRKLKDYGKTVSFLWCPSHSG--IAGNEFVDNAARNPV 260
T S++ L Y + SH G + E +
Sbjct: 455 IPKTFDSDDLIPPY-----------LDQY-------FY-SHIGHHLKNIEHPERMTL--- 492
Query: 261 NPHLPLKLCSPLDLKPFAAKL--TKTKWQALWDTLPIPNKLKRVKPVIEDWGSSNRDNRY 318
+ LD + K+ T W A L +LK KP I D D +Y
Sbjct: 493 ---FRMVF---LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-----NDPKY 541
Query: 319 EEVVICRMRIGHTRATHSFLFKRTPPPSCRCGDPLTVLHI 358
E +V A FL K + C +L I
Sbjct: 542 ERLV---------NAILDFLPK--IEENLICSKYTDLLRI 570
Score = 39.1 bits (90), Expect = 0.003
Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 78/292 (26%)
Query: 161 VLSTSLNQVVCVYSSELIAIHLCLEHLK--FLPSSHFLIISDSKSAL-TALSNNTSDNPI 217
+L T+ + V + S H+ L+H P + KS L L D P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-------DEVKSLLLKYLDCRPQDLPR 320
Query: 218 VAK------ISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNAARNPVNPHLP--LKLC 269
+S+ ++D T W + + + + + L +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLAT----W----------DNWKHVNCDKLTTIIESSLNVL 366
Query: 270 SPLDLK---------PFAAKLTKTKWQALWDTLP------IPNKLKRVKPVIEDWGSSNR 314
P + + P +A + +W + + NKL + ++E +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKEST 425
Query: 315 ---DNRYEEVVICRMRIGHTRATHSFLFKRTPPPSCRCGDPLTVLHI-------LSCHLH 364
+ Y E+ ++++ + A H + P D L ++ + HL
Sbjct: 426 ISIPSIYLEL---KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 365 ANIRASLPT--PPLLTD-------------SPEGVDSLINYLKAIDTRIYEQ 401
T + D + S++N L + Y+
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--QQLKFYKP 532
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 36.8 bits (86), Expect = 0.004
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 176 ELIAIHLCLEHLKFLPSSHFLIISDSKSALTALS--------NN--TSDNPIVAKISVTW 225
EL AI+L L+ I++DS+ AL ++ T+D V K
Sbjct: 53 ELQAIYLALQDSG----LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPV-KNVDLV 107
Query: 226 RKLKDY---GKTVSFLWCPSHSGIAGNEFVDNAARN 258
++ + + V W P+H GI GNE VD
Sbjct: 108 NQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 143
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 36.8 bits (86), Expect = 0.004
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 176 ELIAIHLCLEHLKFLPSSHFLIISDS---KSALTA-----LSNN--TSDNPIVAKISVTW 225
E+ A +E K + ++ ++S + +T N TS V +
Sbjct: 54 EIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEV-INKEDF 112
Query: 226 RKLKDY--GKTVSFLWCPSHSGIAGNEFVDNAARN 258
L+ G + ++ P HSG GNE D AR
Sbjct: 113 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 147
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 30.9 bits (71), Expect = 0.35
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 225 WRKLKDYGK--TVSFLWCPSHSGIAGNEFVDNAARN 258
W++L + + W H+G NE D AR
Sbjct: 104 WQRLDAALGQHQIKWEWVKGHAGHPENERADELARA 139
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 30.6 bits (70), Expect = 0.49
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 225 WRKLKDYGK--TVSFLWCPSHSGIAGNEFVDNAAR 257
W L V F + H+G NE VD AR
Sbjct: 109 WEALLLAMAPHRVRFHFVKGHTGHPENERVDREAR 143
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 30.6 bits (70), Expect = 0.51
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 225 WRKLKDYGK--TVSFLWCPSHSGIAGNEFVDNAARN 258
W++L + + + W H+G A NE D AR
Sbjct: 106 WKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARA 141
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 30.1 bits (69), Expect = 0.55
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 225 WRKLKDYGK--TVSFLWCPSHSGIAGNEFVDNAAR 257
W+++ V+F HS N D AR
Sbjct: 105 WQEILKLTTLHRVTFHKVKGHSDNPYNSRADELAR 139
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix,
pectolytic, polygalacturonate; 1.54A {Bacillus} PDB:
3vmw_A*
Length = 326
Score = 30.4 bits (68), Expect = 1.1
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 181 HLCLEHLKFLPSSHFLIISDSKSALTALSNNTSDNPIVAKISVTWRKLKDYGKTVSFLWC 240
++ ++H +F SD L + N I+V+W K +++ KT+
Sbjct: 131 NVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEY------ITVSWNKFENHWKTMLVGHT 184
Query: 241 PSHSG------IAGNEFVDNAARNP 259
+ S N F + +R P
Sbjct: 185 DNASLAPDKITYHHNYFNNLNSRVP 209
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 30.1 bits (68), Expect = 1.4
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 189 FLPSS--HFLIISDSKSALTALSNNTSDNPIVAKISVTWRKLKD 230
LP++ L++ + + L S N S P L+
Sbjct: 211 MLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQALEDLQG 254
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.9
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 8/28 (28%)
Query: 307 EDWGSSNRDNRYEEVVICRMRIGHTRAT 334
E W ++ +C IG TR T
Sbjct: 657 ESWA--------NQLTVCGAIIGWTRGT 676
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 28.6 bits (64), Expect = 5.0
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 189 FLPSS--HFLIISDSKSALTALSNNTSDNPIVAKISVTWRKLKD 230
LP + H+L++ + + S N S+ PI KLKD
Sbjct: 307 MLPYAPIHYLLMEEIDFPIVMTSGNVSEEPICKDNEEALEKLKD 350
>3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral defense,
cytokine, secreted; 2.80A {Homo sapiens}
Length = 196
Score = 27.1 bits (59), Expect = 9.8
Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 270 SPLDLKPFAAKLTKTKWQALWDTLPIPNKLKRVKPVIEDWGSSNRDNRYEEVVICRMRIG 329
SP +L+ F K AL ++L + + R + W R E V +
Sbjct: 46 SPQELQAF-----KRAKDALEESLLLKDCKCRSRLFPRTWDLRQLQVR-ERPVALEAELA 99
Query: 330 HTRATHSFLFKRTPPPSCRCGDPLTVLHILSCHLHANIRASLPTPPLLTDSPEG 383
T P PL LH H+ + +RA + P G
Sbjct: 100 LTLKVLEATADTDPALGDVLDQPLHTLH----HILSQLRACIQPQPTAGPRTRG 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,132,210
Number of extensions: 353232
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 27
Length of query: 402
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 306
Effective length of database: 4,021,377
Effective search space: 1230541362
Effective search space used: 1230541362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)