RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7520
(402 letters)
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 49.5 bits (117), Expect = 3e-08
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 140 YTDGSKSVNGT--SCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLI 197
YTDGS + Y + L Q + + I
Sbjct: 11 YTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTDS-----GPKVNI 65
Query: 198 ISDSKSALTALSNN--TSDNPIVAKISVTWRKLKDYGKTVSFLWCPSHSGIAGNEFVDNA 255
I DS+ + +++ S++ IV +I + + W P+H GI GN+ VD+
Sbjct: 66 IVDSQYVMGIVASQPTESESKIVNQIIEEMI----KKEAIYVAWVPAHKGIGGNQEVDHL 121
Query: 256 AR 257
Sbjct: 122 VS 123
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
[TaxId: 274]}
Length = 147
Score = 38.8 bits (89), Expect = 3e-04
Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 140 YTDGSKSVNGTSCAYSI----NNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHF 195
+TDG+ N ++ + L + EL A L+ LK
Sbjct: 7 FTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEV 64
Query: 196 LIISDSKSALTALSNNTSDNPIVA---KISVTWRKLKDY---------GKTVSFLWCPSH 243
+ +DS A + + K +D V F + H
Sbjct: 65 DLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGH 124
Query: 244 SGIAGNEFVDNAARN 258
+G NE VD AR
Sbjct: 125 TGHPENERVDREARR 139
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 38.5 bits (88), Expect = 4e-04
Identities = 19/131 (14%), Positives = 30/131 (22%), Gaps = 13/131 (9%)
Query: 140 YTDGSKSVNGTSCAYSI-----NNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSH 194
+T GS N Y S + + AI +
Sbjct: 6 FTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVIL 65
Query: 195 FLIISDSKSALTALSNNTSDN--------PIVAKISVTWRKLKDYGKTVSFLWCPSHSGI 246
+ +T +N P+ + + W H+G
Sbjct: 66 STDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGH 125
Query: 247 AGNEFVDNAAR 257
NE D AR
Sbjct: 126 PENERADELAR 136
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 1
[TaxId: 11676]}
Length = 110
Score = 35.7 bits (82), Expect = 0.002
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 140 YTDGSKSVN-GTSCAYSINNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLII 198
Y DG+ + A + N +EL AI+L L+ I+
Sbjct: 12 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSG----LEVNIV 67
Query: 199 SDSKSALTALSN--NTSDNPIVAKISVTWRKLKDYGKTVSFLWCPSH 243
+DS+ AL + + S++ +V +I +L K V W P+H
Sbjct: 68 TDSQYALGIIQAQPDQSESELVNQI---IEQLIKKEK-VYLAWVPAH 110
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 381
Score = 27.6 bits (61), Expect = 3.0
Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 13/98 (13%)
Query: 150 TSCAYSINNLIVLSTSLNQVVCVYSSELI------AIHLCLEHLKFLPSSHFLIISDSKS 203
+ + ++V + N + + EL + + LK + ++ ++ S +
Sbjct: 90 IFVCFHGDQVLVSTR--NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDL 147
Query: 204 ALTALSNNTSDNPIVAKISVTWRKLKDYGKTVSFLWCP 241
+ L ++ S ++ L
Sbjct: 148 SALDLRTKSTKQLAQNVTSFDVT-----NSQLAVLLKD 180
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 26.8 bits (58), Expect = 3.4
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 171 CVYSSELIAIHLCLEHLKFLPSSHFLIISDSK 202
+SE+ A+ +K P+ +L D +
Sbjct: 155 LYVASEMKALVPVCRTIKEFPAGSYLWSQDGE 186
>d2owna2 d.38.1.8 (A:150-258) Putative oleoyl-ACP thioesterase
LP0708 {Lactobacillus plantarum [TaxId: 1590]}
Length = 109
Score = 25.8 bits (56), Expect = 5.1
Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 156 INNLIVLSTSLNQVVCVYSSELIAIHLCLEHLKFLPSSHFLII------SDSKSALTALS 209
+NN ++ + + + +H+ + + + + S+ +T
Sbjct: 29 VNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHANILPSEVADQVTTSH 88
Query: 210 NNTSDNPIVAKISVTWRKLKD 230
D+ ++++ WR L +
Sbjct: 89 LIEVDDEKCCEVTIQWRTLPE 109
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein
Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 26.3 bits (58), Expect = 5.8
Identities = 8/62 (12%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 174 SSELIAIHLCLEHLKFLPSSHFLIISDSKSALTALSNNTS--------DNPIVAKISVTW 225
+++++ + L +L +P+ + +++ + L+ S+ + + IV +
Sbjct: 144 AAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDL 203
Query: 226 RK 227
R+
Sbjct: 204 RR 205
>d2hhma_ e.7.1.1 (A:) Inositol monophosphatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 272
Score = 26.1 bits (56), Expect = 8.0
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 29 GDLSLDLDQLDCACKNGFCPASRYEQFISG-------KGGL---PQGHPDSLLGPPFLLA 78
G ++++ + + + + ++G GG+ G P L+ + A
Sbjct: 190 GTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRVIAA 249
Query: 79 SPLFLKTIFLPYIKPLP 95
+ L I+ +P
Sbjct: 250 NNRILAERIAKEIQVIP 266
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,534,164
Number of extensions: 70983
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 11
Length of query: 402
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,213,086
Effective search space: 382122090
Effective search space used: 382122090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)