BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7523
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 39 LYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHN---ATNYYXXXXXXXXXXXXXXX 95
+Y + +TA+Y + G +GN VT +AR K + + +Y+
Sbjct: 29 IYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLA 88
Query: 96 XPVEIY-YIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSL 154
PVE+Y +IW +P+ FG+ C + AT L + + +V RY AICHPF + +L
Sbjct: 89 MPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTL 148
Query: 155 SKLSRAIRLILVIWIISLLCAIPQV 179
SR + I IW+ S L AIP +
Sbjct: 149 MSRSRTKKFISAIWLASALLAIPML 173
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 20 NFSADGNASVFAYPP------------KRDALYIVIPMTALYSLILFTGLIGNVVTCIVI 67
F GN S F P +RD +++V M + SLI+ + GNV+ I
Sbjct: 1 GFGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVV-GMGIVMSLIVLAIVFGNVLVITAI 59
Query: 68 ARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSA 127
A+ + + TNY+ P +I + + FG +C
Sbjct: 60 AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCV 118
Query: 128 NATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLL 173
A++ T+ V+RYFAI PF SL ++A +IL++WI+S L
Sbjct: 119 TASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 164
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 18 DGNFSADGNASVFAYPP------------KRDALYIVIPMTALYSLILFTGLIGNVVTCI 65
D GN S F P +RD +++V M + SLI+ + GNV+
Sbjct: 6 DDAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVV-GMGIVMSLIVLAIVFGNVLVIT 64
Query: 66 VIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAET 125
IA+ + + TNY+ P +I + + FG +C
Sbjct: 65 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVL 123
Query: 126 SANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCA 175
A++ T+ V+RYFAI PF SL ++A +IL++WI+S L +
Sbjct: 124 CVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 173
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 10 NYHEEDWLDGNFSADGNASVFAYPP------------KRDALYIVIPMTALYSLILFTGL 57
+Y ++D + GN S F P +RD +++V M + SLI+ +
Sbjct: 1 DYKDDDAM----GQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVV-GMGIVMSLIVLAIV 55
Query: 58 IGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCV 117
GNV+ IA+ + + TNY+ P +I + + FG +C
Sbjct: 56 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCE 114
Query: 118 LRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCA 175
A++ T+ V+RYFAI PF SL ++A +IL++WI+S L +
Sbjct: 115 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 172
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 10 NYHEEDWLDGNFSADGNASVFAYPP------------KRDALYIVIPMTALYSLILFTGL 57
+Y ++D G GN S F P +RD +++V M + SLI+ +
Sbjct: 1 DYKDDDDAMGQ---PGNGSAFLLAPNRSHAPDHDVTQQRDEVWVV-GMGIVMSLIVLAIV 56
Query: 58 IGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCV 117
GNV+ IA+ + + TNY+ P +I + + FG +C
Sbjct: 57 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCE 115
Query: 118 LRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCA 175
A++ T+ V+RYFAI PF SL ++A +IL++WI+S L +
Sbjct: 116 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 173
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 25 GNASVFAYPP------------KRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKH 72
GN S F P +RD +++V M + SLI+ + GNV+ IA+ +
Sbjct: 5 GNGSAFLLAPNRSHAPDHDVTQQRDEVWVV-GMGIVMSLIVLAIVFGNVLVITAIAKFER 63
Query: 73 MHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVL 132
+ TNY+ P +I + + FG +C A++
Sbjct: 64 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIE 122
Query: 133 TITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLL 173
T+ V+RYFAI PF SL ++A +IL++WI+S L
Sbjct: 123 TLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 163
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 33 PPKRDA--LYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXX 90
P R A L + I +TALYS + GL+GNV+ I R + ATN Y
Sbjct: 3 PGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL 62
Query: 91 XXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFW 150
Y+ +P FGE C + ++ T+T +V+RY A+CHP
Sbjct: 63 ATSTLPFQSAKYLMETWP--FGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK 120
Query: 151 SHSLSKLSRAIRLILVIWIISLLCAIP 177
+ ++A + + IW+++ +P
Sbjct: 121 ALDFRTPAKAKLINICIWVLASGVGVP 147
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 34 PKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXX 93
+RD +++V M + SLI+ + GNV+ IA+ + + TNY+
Sbjct: 3 QQRDEVWVV-GMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 61
Query: 94 XXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHS 153
P +I + + FG +C A++ T+ V+RYFAI PF S
Sbjct: 62 AVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 120
Query: 154 LSKLSRAIRLILVIWIISLL 173
L ++A +IL++WI+S L
Sbjct: 121 LLTKNKARVIILMVWIVSGL 140
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 42 VIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIY 101
V+ M + SLI+ + GNV+ IA+ + + TNY+ P
Sbjct: 182 VVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA 241
Query: 102 YIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAI 161
+I ++ + FG +C A++ T+ V+RYFAI PF SL ++A
Sbjct: 242 HILTK-TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKAR 300
Query: 162 RLILVIWIISLLCA 175
+IL++WI+S L +
Sbjct: 301 VIILMVWIVSGLTS 314
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 41 IVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEI 100
I + +TA+YS++ GL+GN + VI R M ATN Y
Sbjct: 21 IPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQST 80
Query: 101 YYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRA 160
Y+ + +P FG+ C + + ++ T+T +V+RY A+CHP + +A
Sbjct: 81 VYLMNSWP--FGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKA 138
Query: 161 IRLILVIWIIS 171
+ + IW++S
Sbjct: 139 KIINICIWLLS 149
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 42 VIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIY 101
V+ M + SLI+ + GNV+ IA+ + + TNY+ P
Sbjct: 5 VVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA 64
Query: 102 YIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAI 161
+I ++ + FG +C A++ T+ V+RYFAI PF SL ++A
Sbjct: 65 HILTK-TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKAR 123
Query: 162 RLILVIWIISLL 173
+IL++WI+S L
Sbjct: 124 VIILMVWIVSGL 135
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 34 PKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXX 93
+RD +++V M + SLI+ + GNV+ IA+ + + TNY+
Sbjct: 2 QQRDEVWVV-GMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 60
Query: 94 XXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHS 153
P I + + FG +C A++ T+ V+RYFAI PF S
Sbjct: 61 AVVPFGAACILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 119
Query: 154 LSKLSRAIRLILVIWIISLL 173
L ++A +IL++WI+S L
Sbjct: 120 LLTKNKARVIILMVWIVSGL 139
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
Query: 38 ALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXP 97
++ I + ALYS++ GL GN + VI R M ATN Y
Sbjct: 13 SMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPF 72
Query: 98 VEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKL 157
+ Y+ +P FG C + + ++ T+ +V+RY A+CHP +
Sbjct: 73 QSVNYLMGTWP--FGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTP 130
Query: 158 SRAIRLILVIWIISLLCAIP 177
A + + WI+S +P
Sbjct: 131 RNAKIVNVCNWILSSAIGLP 150
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Query: 39 LYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPV 98
L + + + LY + GL+GN + VI R+ M ATN Y
Sbjct: 122 LGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQ 181
Query: 99 EIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLS 158
+ +P FG C + + T+TA +V+RY AICHP + + S
Sbjct: 182 GTDILLGFWP--FGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSS 239
Query: 159 RAIRLILVIWIISLLCAIP 177
+A + + IW ++ + +P
Sbjct: 240 KAQAVNVAIWALASVVGVP 258
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 51 LILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYV 110
L++ G N +T V ++K + NY +Y Y +V
Sbjct: 47 LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FV 105
Query: 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWII 170
FG T C L+G A + ++ +ERY +C P + + + AI + W++
Sbjct: 106 FGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVM 164
Query: 171 SLLCAIP 177
+L CA P
Sbjct: 165 ALACAAP 171
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 51 LILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYV 110
L++ G N +T V ++K + NY +Y Y +V
Sbjct: 47 LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FV 105
Query: 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWII 170
FG T C L G A + ++ +ERY +C P + + + AI + W++
Sbjct: 106 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVM 164
Query: 171 SLLCAIP 177
+L CA P
Sbjct: 165 ALACAAP 171
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 51 LILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYV 110
L++ G N +T V ++K + NY +Y Y +V
Sbjct: 46 LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FV 104
Query: 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWII 170
FG T C L G A + ++ +ERY +C P + + + AI + W++
Sbjct: 105 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVM 163
Query: 171 SLLCAIP 177
+L CA P
Sbjct: 164 ALACAAP 170
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 51 LILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYV 110
L++ G N +T V ++K + NY +Y Y +V
Sbjct: 47 LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FV 105
Query: 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWII 170
FG T C L G A + ++ +ERY +C P + + + AI + W++
Sbjct: 106 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVM 164
Query: 171 SLLCAIP 177
+L CA P
Sbjct: 165 ALACAAP 171
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 51 LILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYV 110
L++ G N +T V ++K + NY +Y Y +V
Sbjct: 46 LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FV 104
Query: 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWII 170
FG T C L G A + ++ +ERY +C P + + + AI + W++
Sbjct: 105 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVM 163
Query: 171 SLLCAIP 177
+L CA P
Sbjct: 164 ALACAAP 170
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 51 LILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYV 110
L++ G N +T V ++K + NY +Y Y +V
Sbjct: 47 LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FV 105
Query: 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWII 170
FG T C L G A + ++ +ERY +C P + + + AI + W++
Sbjct: 106 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVM 164
Query: 171 SLLCAIP 177
+L CA P
Sbjct: 165 ALACAAP 171
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Query: 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIW 104
M+ L +L++ + GNV+ I + + TN + P +
Sbjct: 14 MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV- 72
Query: 105 SRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164
R +++G C L A++ T+ ++RY AI PF SL +RA +I
Sbjct: 73 VRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVII 132
Query: 165 LVIWIISLL 173
+W IS L
Sbjct: 133 CTVWAISAL 141
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Query: 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIW 104
M+ L +L++ + GNV+ I + + TN + P +
Sbjct: 14 MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV- 72
Query: 105 SRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164
R +++G C L A++ T+ ++RY AI PF SL +RA +I
Sbjct: 73 VRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVII 132
Query: 165 LVIWIISLL 173
+W IS L
Sbjct: 133 CTVWAISAL 141
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 66 VIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAET 125
+I +K M TNY+ V Y Y +G +C
Sbjct: 56 IILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWY-YGLFYCKFHNFFPIA 114
Query: 126 SANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
+ A++ ++TA +RY AI HP + ++ + I VIW+++LL A PQ
Sbjct: 115 AVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVV--ICVIWVLALLLAFPQ 165
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Query: 33 PPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXX 92
P ++YI + + I ++GNV+ C + N ++ N TNY+
Sbjct: 2 PIMGSSVYITVELA-----IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVG 56
Query: 93 XXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSH 152
P I G C+ A +++ ++ A ++RY AI P +
Sbjct: 57 VLAIPFAITISTGFCAACHG---CLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYN 113
Query: 153 SLSKLSRAIRLILVIWIIS 171
L +RA +I + W++S
Sbjct: 114 GLVTGTRAAGIIAICWVLS 132
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 3/148 (2%)
Query: 33 PPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXX 92
P ++ V+ + L + +IGN++ + NK + NY+
Sbjct: 3 PLGGHTIWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIG 62
Query: 93 XXXXPV-EIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWS 151
+ Y I +R+ G C L ++NA+V+ + + +RYF+I P
Sbjct: 63 VISMNLFTTYIIMNRW--ALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTY 120
Query: 152 HSLSKLSRAIRLILVIWIISLLCAIPQV 179
+ RA +I + W+IS + P +
Sbjct: 121 RAKRTTKRAGVMIGLAWVISFVLWAPAI 148
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 7 TAMNYHEEDWLDGNFSADGNASVFAYPPKRD--ALYIVIPMTALYSLILFTGLIGNVVTC 64
T+ NY EE G+ P R+ A + I + +YS+I TG++GN +
Sbjct: 18 TSDNYTEE-------MGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVI 70
Query: 65 IVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAE 124
+V+ K + + T+ Y + + + + + FG C +
Sbjct: 71 LVMGYQKKLRSMTDKYRLHLSVADLLFVIT---LPFWAVDAVANWYFGNFLCKAVHVIYT 127
Query: 125 TSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
+ ++V + +++RY AI H S KL + + +WI +LL IP
Sbjct: 128 VNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 7 TAMNYHEEDWLDGNFSADGNASVFAYPPKRD--ALYIVIPMTALYSLILFTGLIGNVVTC 64
T+ NY EE G+ P R+ A + I + +YS+I TG++GN +
Sbjct: 18 TSDNYTEE-------MGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVI 70
Query: 65 IVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAE 124
+V+ K + + T+ Y + + + + + FG C +
Sbjct: 71 LVMGYQKKLRSMTDKYRLHLSVADLLFVIT---LPFWAVDAVANWYFGNFLCKAVHVIYT 127
Query: 125 TSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
+ ++V + +++RY AI H S KL + + +WI +LL IP
Sbjct: 128 VNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 7 TAMNYHEEDWLDGNFSADGNASVFAYPPKRD--ALYIVIPMTALYSLILFTGLIGNVVTC 64
T+ NY EE G+ P R+ A + I + +YS+I TG++GN +
Sbjct: 18 TSDNYTEE-------MGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVI 70
Query: 65 IVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAE 124
+V+ K + + T+ Y + + + + + FG C +
Sbjct: 71 LVMGYQKKLRSMTDKYRLHLSVADLLFVIT---LPFWAVDAVANWYFGNFLCKAVHVIYT 127
Query: 125 TSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
+ ++V + +++RY AI H S KL + + +WI +LL IP
Sbjct: 128 VNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 11/155 (7%)
Query: 20 NFSADGNA---SVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNA 76
++ D +A V A P ++YI + + I ++GNV+ C + N ++ N
Sbjct: 1 DYKDDDDAMGQPVGAPPIMGSSVYITVELA-----IAVLAILGNVLVCWAVWLNSNLQNV 55
Query: 77 TNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITA 136
TNY+ P I G C+ +++ ++ A
Sbjct: 56 TNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHG---CLFIACFVLVLTQSSIFSLLA 112
Query: 137 FTVERYFAICHPFWSHSLSKLSRAIRLILVIWIIS 171
++RY AI P + L +RA +I + W++S
Sbjct: 113 IAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 147
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 31 AYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXX 90
A P ++YI + + I ++GNV+ C + N ++ N TNY+
Sbjct: 25 APPIMGSSVYITVELA-----IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIA 79
Query: 91 XXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFW 150
P I G C+ +++ ++ A ++RY AI P
Sbjct: 80 VGVLAIPFAITISTGFCAACHG---CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLR 136
Query: 151 SHSLSKLSRAIRLILVIWIIS 171
+ L +RA +I + W++S
Sbjct: 137 YNGLVTGTRAKGIIAICWVLS 157
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 8/139 (5%)
Query: 33 PPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXX 92
P ++YI + + I ++GNV+ C + N ++ N TNY+
Sbjct: 2 PIMGSSVYITVELA-----IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVG 56
Query: 93 XXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSH 152
P I G C+ +++ ++ A ++RY AI P +
Sbjct: 57 VLAIPFAITISTGFCAACHG---CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYN 113
Query: 153 SLSKLSRAIRLILVIWIIS 171
L +RA +I + W++S
Sbjct: 114 GLVTGTRAKGIIAICWVLS 132
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 33 PPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXX 92
P ++YI + + I ++GNV+ C + N ++ N TNY+
Sbjct: 2 PIMGSSVYITVELA-----IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVG 56
Query: 93 XXXXPVEIYYIWSRYPYVFGETF--CVLRGLAAETSANATVLTITAFTVERYFAICHPFW 150
P I G F C + L A +++ ++ A ++RY AI P
Sbjct: 57 VLAIPFAIAISTGFCAACHGCLFIACFVLVLTA-----SSIFSLLAIAIDRYIAIRIPLR 111
Query: 151 SHSLSKLSRAIRLILVIWIIS 171
+ L +RA +I + W++S
Sbjct: 112 YNGLVTGTRAKGIIAICWVLS 132
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 9/140 (6%)
Query: 42 VIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIY 101
++P+ + S I + N++ + + +H N Y P+ I
Sbjct: 8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL 67
Query: 102 YI----WSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKL 157
Y+ WS G C+ ++ A++ ++ ++RY ++ P
Sbjct: 68 YLLMSKWS-----LGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTK 122
Query: 158 SRAIRLILVIWIISLLCAIP 177
+RA IL W +S L IP
Sbjct: 123 TRASATILGAWFLSFLWVIP 142
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 50 SLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPV-EIYYIWSRYP 108
SL L T +IGN++ + I N+H+ NY+ + +Y + +P
Sbjct: 32 SLSLVT-IIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWP 90
Query: 109 YVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIW 168
G C L +NA+V+ + + +RYF + P A +I W
Sbjct: 91 --LGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAW 148
Query: 169 IISLLCAIPQV 179
++S + P +
Sbjct: 149 VLSFILWAPAI 159
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 109 YVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIW 168
++FG C + G +++T+ +++RY I P + RA +I+ +W
Sbjct: 101 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVW 160
Query: 169 IISLLCAI 176
+ S+L AI
Sbjct: 161 LWSVLWAI 168
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 109 YVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIW 168
++FG C + G +++T+ +++RY I P + RA +I+ +W
Sbjct: 100 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVW 159
Query: 169 IISLLCAI 176
+ S+L AI
Sbjct: 160 LWSVLWAI 167
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 3/132 (2%)
Query: 49 YSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYP 108
Y ++ + GN + C+ + + + + TNY P +Y +
Sbjct: 45 YCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV 104
Query: 109 YVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPF-WSHSLSKLS--RAIRLIL 165
+ F C + A++ + A +++RY A+ P + H + S R +I
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMIT 164
Query: 166 VIWIISLLCAIP 177
+W+++ + P
Sbjct: 165 AVWVLAFAVSCP 176
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 49 YSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXXXXXXXXXXXXXXPVEIYYIWSRYP 108
Y+L+ L+GN + +VI ++ + T+ Y IW+
Sbjct: 18 YALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLP------IWAASK 71
Query: 109 ---YVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI- 164
++FG C + L E + + +L + +V+RY AI H + +L++ ++ +
Sbjct: 72 VNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHA--TRTLTQKRHLVKFVC 129
Query: 165 LVIWIISLLCAIP 177
L W +S+ ++P
Sbjct: 130 LGCWGLSMNLSLP 142
>pdb|1Q15|A Chain A, Carbapenam Synthetase
pdb|1Q15|B Chain B, Carbapenam Synthetase
pdb|1Q15|C Chain C, Carbapenam Synthetase
pdb|1Q15|D Chain D, Carbapenam Synthetase
pdb|1Q19|A Chain A, Carbapenam Synthetase
pdb|1Q19|B Chain B, Carbapenam Synthetase
pdb|1Q19|C Chain C, Carbapenam Synthetase
pdb|1Q19|D Chain D, Carbapenam Synthetase
Length = 503
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 145 ICHPFWSHSLSKLSRAI 161
I HPFWSHSL L A+
Sbjct: 393 IRHPFWSHSLISLCHAL 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,817,815
Number of Sequences: 62578
Number of extensions: 150367
Number of successful extensions: 317
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 44
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)