Query psy7523
Match_columns 179
No_of_seqs 120 out of 1549
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 20:32:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 2.4E-27 5.3E-32 182.7 10.0 143 34-179 27-169 (423)
2 PHA03234 DNA packaging protein 99.9 3.3E-25 7.2E-30 173.6 14.3 135 40-179 30-166 (338)
3 KOG4220|consensus 99.9 3.3E-26 7.2E-31 176.7 2.1 141 36-177 24-164 (503)
4 PHA02638 CC chemokine receptor 99.9 1.4E-23 2.9E-28 168.6 15.7 134 41-178 97-230 (417)
5 PHA03087 G protein-coupled che 99.9 3.4E-23 7.4E-28 162.2 15.4 136 41-179 39-174 (335)
6 PHA03235 DNA packaging protein 99.9 4.9E-23 1.1E-27 164.9 13.6 136 39-178 29-166 (409)
7 PHA02834 chemokine receptor-li 99.9 6E-23 1.3E-27 160.2 13.6 131 43-178 29-159 (323)
8 PF00001 7tm_1: 7 transmembran 99.9 1.5E-21 3.3E-26 145.6 10.5 119 59-178 1-119 (257)
9 PF10320 7TM_GPCR_Srsx: Serpen 99.6 3.8E-16 8.2E-21 118.3 6.3 118 54-174 2-119 (257)
10 KOG2087|consensus 99.6 6.2E-15 1.3E-19 113.2 7.9 135 45-179 27-167 (363)
11 PF10328 7TM_GPCR_Srx: Serpent 99.5 7.6E-14 1.7E-18 106.7 9.8 126 52-177 3-128 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 99.1 6.9E-10 1.5E-14 86.5 10.4 126 52-178 6-142 (318)
13 PF10323 7TM_GPCR_Srv: Serpent 98.7 2.3E-08 5E-13 76.9 6.4 124 55-178 7-138 (283)
14 PF11710 Git3: G protein-coupl 98.5 3.4E-06 7.4E-11 61.6 12.6 76 72-148 31-106 (201)
15 PF05462 Dicty_CAR: Slime mold 98.4 3.8E-06 8.2E-11 65.1 10.4 124 45-177 9-132 (303)
16 PF05296 TAS2R: Mammalian tast 98.3 4.1E-05 8.9E-10 59.5 13.6 130 42-172 6-142 (303)
17 PF10321 7TM_GPCR_Srt: Serpent 98.3 1.7E-05 3.6E-10 61.8 11.1 120 45-164 35-154 (313)
18 PF10316 7TM_GPCR_Srbc: Serpen 98.3 1.2E-05 2.6E-10 61.3 10.0 124 44-167 7-132 (273)
19 PF10292 7TM_GPCR_Srab: Serpen 98.0 0.00059 1.3E-08 53.6 15.3 126 47-173 21-152 (324)
20 PF10317 7TM_GPCR_Srd: Serpent 97.7 0.0011 2.4E-08 51.3 12.5 122 48-175 4-136 (292)
21 PF03402 V1R: Vomeronasal orga 97.7 0.00011 2.4E-09 55.8 5.6 101 73-176 7-111 (265)
22 PF02118 Srg: Srg family chemo 97.6 0.00034 7.3E-09 53.4 7.7 107 52-159 7-124 (275)
23 PF06681 DUF1182: Protein of u 96.8 0.0087 1.9E-07 43.4 7.4 43 111-153 112-154 (226)
24 PF00002 7tm_2: 7 transmembran 96.8 0.00074 1.6E-08 50.5 1.9 116 55-176 13-128 (242)
25 PF04789 DUF621: Protein of un 96.6 0.027 5.8E-07 42.8 8.8 100 74-175 46-149 (305)
26 PF02117 7TM_GPCR_Sra: Serpent 96.5 0.14 3.1E-06 40.3 12.9 108 45-152 23-137 (328)
27 PF03383 Serpentine_r_xa: Caen 96.2 0.0027 5.9E-08 44.1 1.5 58 121-178 49-106 (153)
28 PF10318 7TM_GPCR_Srh: Serpent 94.7 0.58 1.3E-05 36.2 10.2 103 48-150 9-119 (302)
29 PF10326 7TM_GPCR_Str: Serpent 94.2 0.05 1.1E-06 42.2 3.3 109 50-158 6-124 (307)
30 PF02175 7TM_GPCR_Srb: Serpent 94.1 1.5 3.2E-05 32.8 10.5 51 109-159 78-128 (236)
31 PF02101 Ocular_alb: Ocular al 93.1 2.7 5.9E-05 33.8 11.0 100 48-147 32-147 (405)
32 KOG4564|consensus 92.8 4.9 0.00011 33.4 15.0 125 48-176 150-285 (473)
33 PF10327 7TM_GPCR_Sri: Serpent 92.3 2.3 5E-05 33.2 9.8 104 47-153 13-127 (303)
34 KOG4193|consensus 88.2 6.3 0.00014 34.0 9.6 58 115-175 385-442 (610)
35 PF03125 Sre: C. elegans Sre G 87.0 14 0.00031 29.6 14.0 115 40-154 24-161 (365)
36 PF10319 7TM_GPCR_Srj: Serpent 85.4 12 0.00026 29.4 9.0 109 51-159 13-131 (310)
37 PF10322 7TM_GPCR_Sru: Serpent 68.9 55 0.0012 25.7 12.4 64 114-178 101-164 (307)
38 PF01102 Glycophorin_A: Glycop 67.2 6.1 0.00013 26.5 2.5 23 54-76 74-96 (122)
39 PF05915 DUF872: Eukaryotic pr 52.8 65 0.0014 21.3 7.7 27 39-65 40-66 (115)
40 PF14362 DUF4407: Domain of un 52.5 1.1E+02 0.0023 23.7 7.6 20 129-148 52-71 (301)
41 PF15383 TMEM237: Transmembran 49.0 1.2E+02 0.0026 23.2 7.4 42 135-176 153-194 (253)
42 PF02076 STE3: Pheromone A rec 42.8 1.6E+02 0.0034 22.9 9.5 112 56-174 4-118 (283)
43 TIGR01477 RIFIN variant surfac 42.6 33 0.00071 27.5 3.3 29 46-74 311-339 (353)
44 PTZ00046 rifin; Provisional 39.7 39 0.00084 27.1 3.3 29 46-74 316-344 (358)
45 KOG3609|consensus 38.5 3E+02 0.0066 24.9 9.5 77 96-175 323-400 (822)
46 PF01534 Frizzled: Frizzled/Sm 35.0 2.3E+02 0.005 22.5 10.7 62 112-175 90-151 (328)
47 PF11446 DUF2897: Protein of u 34.3 55 0.0012 18.6 2.5 21 49-69 8-28 (55)
48 PF06679 DUF1180: Protein of u 31.7 1.2E+02 0.0026 21.5 4.4 26 46-71 96-121 (163)
49 PF09882 DUF2109: Predicted me 31.3 1.3E+02 0.0028 18.4 4.9 45 53-97 4-48 (78)
50 PHA03099 epidermal growth fact 28.0 1.8E+02 0.0039 19.8 4.5 34 40-73 98-131 (139)
51 PF06024 DUF912: Nucleopolyhed 27.1 86 0.0019 20.1 2.9 7 66-72 85-91 (101)
52 PF10329 DUF2417: Region of un 26.2 2.9E+02 0.0063 20.9 7.9 13 133-145 144-156 (232)
53 PF02009 Rifin_STEVOR: Rifin/s 24.5 63 0.0014 25.3 2.2 27 47-73 258-284 (299)
54 cd07912 Tweety_N N-terminal do 22.6 4.5E+02 0.0097 21.8 7.7 20 75-94 77-96 (418)
55 PF02532 PsbI: Photosystem II 20.9 1.4E+02 0.003 15.3 3.1 14 47-60 13-26 (36)
No 1
>KOG4219|consensus
Probab=99.95 E-value=2.4e-27 Score=182.71 Aligned_cols=143 Identities=27% Similarity=0.511 Sum_probs=132.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhh
Q psy7523 34 PKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGE 113 (179)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~ 113 (179)
..+.+.+.+...+.++.++.++.++||.++++++...|++|+.+|+++.|||+||++.+.+..++...+...+ +|.+|.
T Consensus 27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~-~W~~G~ 105 (423)
T KOG4219|consen 27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ-EWYFGS 105 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-cccccc
Confidence 3455667777788899999999999999999999999999999999999999999999999999999888887 899999
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCCC
Q psy7523 114 TFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV 179 (179)
Q Consensus 114 ~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~~ 179 (179)
.+|++..++.....++|++++++||+|||.||.+|++.+ .++|..++.++++|+.+++.+.|..
T Consensus 106 f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~ 169 (423)
T KOG4219|consen 106 FYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQL 169 (423)
T ss_pred ceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccce
Confidence 999999999999999999999999999999999999854 7899999999999999999999963
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.93 E-value=3.3e-25 Score=173.62 Aligned_cols=135 Identities=20% Similarity=0.268 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHh--hccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHH
Q psy7523 40 YIVIPMTALYSLILFTGLIGNVVTCIVI--ARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCV 117 (179)
Q Consensus 40 ~~~~~~~~~~~~~~~~g~i~N~~vi~~~--~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~ 117 (179)
........+|.+++++|++||.++++++ .+++++|+++|+++.|||+||++.++. .|...... ..+|.+|+..|+
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~~--~~~w~fG~~lCk 106 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLNR--EALFNFNQAFCQ 106 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHH--hCCccCchhHHH
Confidence 4556667899999999999999999955 455666899999999999999999876 55555443 236999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCCC
Q psy7523 118 LRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV 179 (179)
Q Consensus 118 ~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~~ 179 (179)
+..++...+.++|++++++||+|||+|+++|.+++. ++++....+++.|+.+++.++|++
T Consensus 107 ~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l 166 (338)
T PHA03234 107 CVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAA 166 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHh
Confidence 999999999999999999999999999999988653 233444556667999999999863
No 3
>KOG4220|consensus
Probab=99.92 E-value=3.3e-26 Score=176.68 Aligned_cols=141 Identities=23% Similarity=0.414 Sum_probs=130.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhh
Q psy7523 36 RDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETF 115 (179)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~ 115 (179)
....+..+.++++...++++.++||++|++.+.-+|++++..|+|+.+||+||++.+.+.+|.+..+.+.+ .|..|...
T Consensus 24 ~~~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg-~W~LG~~~ 102 (503)
T KOG4220|consen 24 RYETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMG-YWPLGPLV 102 (503)
T ss_pred CccceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHc-ccccchHH
Confidence 34344455566678888999999999999999999999999999999999999999999999999999988 79999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcC
Q psy7523 116 CVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177 (179)
Q Consensus 116 C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p 177 (179)
|.++..+.++...+|++.++.|++|||..|.+|+.|+..+|++|+..+++++|+++++.-.|
T Consensus 103 CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaP 164 (503)
T KOG4220|consen 103 CDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAP 164 (503)
T ss_pred HHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988665
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=168.62 Aligned_cols=134 Identities=28% Similarity=0.560 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhh
Q psy7523 41 IVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRG 120 (179)
Q Consensus 41 ~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~ 120 (179)
.......++.+++++|++||.++++++.+ |++|+++++++.|||++|++..+ ..|+.+.... .+|.+|+..|++..
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~~--~~W~fg~~~Ck~~~ 172 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIYNEF--DQWIFGDFMCKVIS 172 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHHh--ccccccccchhhHH
Confidence 34455678999999999999999987655 77889999999999999998755 5888776553 36989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 121 LAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 121 ~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
++...+.+++++.++++++|||+|+++|.++++.+++++....++++|+++++.++|+
T Consensus 173 ~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~ 230 (417)
T PHA02638 173 ASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPA 230 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888888889999999999999986
No 5
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.91 E-value=3.4e-23 Score=162.21 Aligned_cols=136 Identities=34% Similarity=0.607 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhh
Q psy7523 41 IVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRG 120 (179)
Q Consensus 41 ~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~ 120 (179)
.......++.+++++|++||.++++++.++ +.|++.++++.|||++|++.++. .|........ .+|..++..|++..
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~~-~~~~~~~~~C~~~~ 115 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYIL-FQWSFGEFACKIVS 115 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHHhC-CCCCCCcHHHHHHH
Confidence 444456788999999999999999998887 88999999999999999987765 5655533333 36888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCCC
Q psy7523 121 LAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV 179 (179)
Q Consensus 121 ~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~~ 179 (179)
++...+..++++++++||+|||+++++|.+|++..+++++...+.++|+++++.++|++
T Consensus 116 ~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~ 174 (335)
T PHA03087 116 GLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPIL 174 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHh
Confidence 99999999999999999999999999999999999999999999999999999998863
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.90 E-value=4.9e-23 Score=164.90 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-cCCC-CchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhH
Q psy7523 39 LYIVIPMTALYSLILFTGLIGNVVTCIVIAR-NKHM-HNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFC 116 (179)
Q Consensus 39 ~~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~-~~~~-~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C 116 (179)
.........++.+++++|++||.++++++.+ +|.. ++..++|+.|||++|++. +..+|+.+.. ....|..+...|
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~--~~~~~~~g~~~C 105 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS--NQGLLSGSVAGC 105 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh--cCccccCCCCee
Confidence 3455667789999999999999999987543 3322 355679999999999987 4468877643 222233356899
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 117 VLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 117 ~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
++..++...+..+|++++++||+|||.+|++|.++++ .+++++...++++|+++++.++|+
T Consensus 106 k~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~ 166 (409)
T PHA03235 106 KFASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPA 166 (409)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986544 467888889999999999999885
No 7
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.90 E-value=6e-23 Score=160.23 Aligned_cols=131 Identities=25% Similarity=0.448 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHH
Q psy7523 43 IPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLA 122 (179)
Q Consensus 43 ~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~ 122 (179)
.+...++.+++++|++||.++++++.++|+ +++.|+++.|||++|++. ...+|..+.... + +|.+|+..|++.++.
T Consensus 29 ~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~-~w~~g~~~C~~~~~~ 104 (323)
T PHA02834 29 YFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-N-EWIFGEFMCKLVLGV 104 (323)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-C-CcCCcchHHHhHHHH
Confidence 345678999999999999999998887665 456899999999999976 446888765443 3 689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 123 AETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 123 ~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
...+..+|++++++||+|||.+|++|.+++. ++++++...+..+|+++++.++|+
T Consensus 105 ~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~ 159 (323)
T PHA02834 105 YFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPA 159 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999998654 455677778889999999999886
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.86 E-value=1.5e-21 Score=145.56 Aligned_cols=119 Identities=33% Similarity=0.653 Sum_probs=111.0
Q ss_pred HHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q psy7523 59 GNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFT 138 (179)
Q Consensus 59 ~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~ia 138 (179)
||.+++.++.++|++|++.+++++|||++|++.++...|........+ +|..++..|++..++...+..++.+++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is 79 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD-DWIFSSFLCRIFGFLFYFSSFSSIFSLVAIS 79 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS-SCTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999999888888777763 6888999999999999999999999999999
Q ss_pred HHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 139 VERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 139 ~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
+|||+++++|.+|++..+++++...++.+|+++++.++|+
T Consensus 80 ~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~ 119 (257)
T PF00001_consen 80 IDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPP 119 (257)
T ss_dssp HHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998875
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.64 E-value=3.8e-16 Score=118.26 Aligned_cols=118 Identities=23% Similarity=0.384 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHHHH
Q psy7523 54 FTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLT 133 (179)
Q Consensus 54 ~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 133 (179)
++|++||..++..+.++|++|+|.+++++.+|++|++.+...+|......... + .....|....+...++...+...
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~~~-~--i~~~~Cf~~~~~~~f~~~~qs~~ 78 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFRDH-Q--ITRSECFWQIFFYIFFQCAQSVI 78 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHhhe-e--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888877444332 2 46789999999999999999999
Q ss_pred HHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhh
Q psy7523 134 ITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLC 174 (179)
Q Consensus 134 ~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~ 174 (179)
+++|++||++||+.|.||++..+++..........+++...
T Consensus 79 ~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~ 119 (257)
T PF10320_consen 79 MLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFF 119 (257)
T ss_pred HHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHH
Confidence 99999999999999999999999886666555555555544
No 10
>KOG2087|consensus
Probab=99.58 E-value=6.2e-15 Score=113.20 Aligned_cols=135 Identities=20% Similarity=0.285 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC------CCchhhhhHHH
Q psy7523 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRY------PYVFGETFCVL 118 (179)
Q Consensus 45 ~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~------~~~~~~~~C~~ 118 (179)
+.+...++..+.+.||.+|+......|...++...+++|||++|+++++.......+....+. .|..+...|++
T Consensus 27 lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~ 106 (363)
T KOG2087|consen 27 LRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPV 106 (363)
T ss_pred eeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCch
Confidence 345667888899999999999888777777888999999999999998876555554443322 13447789999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCCC
Q psy7523 119 RGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV 179 (179)
Q Consensus 119 ~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~~ 179 (179)
.+++.+++...|++.++.+++||++.|++|+|-.+.-..|....+.+..|+.+++.++-|+
T Consensus 107 aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl 167 (363)
T KOG2087|consen 107 AGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPL 167 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999977766666699999999999999998775
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.52 E-value=7.6e-14 Score=106.66 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHH
Q psy7523 52 ILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATV 131 (179)
Q Consensus 52 ~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~ 131 (179)
++++|++.|.+++..+.|.+++|++.+.+..+.|++|.+.++..+.........+.+.......-.+.+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999875544444444443321111244566888899999999
Q ss_pred HHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcC
Q psy7523 132 LTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177 (179)
Q Consensus 132 ~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p 177 (179)
++.++||++|+.|+..|.+|++..+.+.+..++.+.|++++....+
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~ 128 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTI 128 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999866543
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.12 E-value=6.9e-10 Score=86.52 Aligned_cols=126 Identities=28% Similarity=0.398 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhhHHhhccCCCC-chHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc--CC------CchhhhhHHHhhHH
Q psy7523 52 ILFTGLIGNVVTCIVIARNKHMH-NATNYYLFSLAVSDLLLLVTGLPVEIYYIWSR--YP------YVFGETFCVLRGLA 122 (179)
Q Consensus 52 ~~~~g~i~N~~vi~~~~~~~~~~-~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~--~~------~~~~~~~C~~~~~~ 122 (179)
+.++|+++|.+-+.++.|+. +| ++.|.++..+|++|++..+..++......... .+ .........+...+
T Consensus 6 ~~~~g~~~N~~h~~VLtrk~-mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTRKS-MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EeHHHHHHHHHHhhhcCChh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 46789999999999887654 45 58899999999999999998888877555443 11 11122333556678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccc--cccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 123 AETSANATVLTITAFTVERYFAICHPFWSH--SLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 123 ~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~--~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
...+...|.|..+.||+.|++++.+|++.+ +..++|.+...+.++++++.+...|.
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~ 142 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPY 142 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHh
Confidence 889999999999999999999999998753 45667778888888888888776653
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.75 E-value=2.3e-08 Score=76.85 Aligned_cols=124 Identities=15% Similarity=0.288 Sum_probs=91.5
Q ss_pred HHHHHHHHhhHHhhccCC----CCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---cCCCchhhhhHHHhhHHHHHHH
Q psy7523 55 TGLIGNVVTCIVIARNKH----MHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWS---RYPYVFGETFCVLRGLAAETSA 127 (179)
Q Consensus 55 ~g~i~N~~vi~~~~~~~~----~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~---~~~~~~~~~~C~~~~~~~~~~~ 127 (179)
+.++..+.++..+.|.|+ .+++.+.++.+.+++|++..+............ +.-...++..-++.....+...
T Consensus 7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~ 86 (283)
T PF10323_consen 7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFL 86 (283)
T ss_pred ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 445556666666655444 458999999999999998876644433333321 1001112233566667778888
Q ss_pred HHHHHHHHHHHHHHHHHHhccC-ccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 128 NATVLTITAFTVERYFAICHPF-WSHSLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 128 ~~s~~~~~~ia~~R~~~v~~p~-~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
.......+.+|++||.|+++|. ++.+..++.+...++.+-|+.+.++++|-
T Consensus 87 ~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~ 138 (283)
T PF10323_consen 87 YIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPF 138 (283)
T ss_pred HHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeee
Confidence 8899999999999999999999 88888898999999999999999998873
No 14
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.55 E-value=3.4e-06 Score=61.63 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=61.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7523 72 HMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHP 148 (179)
Q Consensus 72 ~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p 148 (179)
+.|.-++-++.||.++|++.++..+.........+ +-..+...|..++++.......+-+...+||++-|+.+.+|
T Consensus 31 r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~-~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 31 RRRSFRHQLILNLLLADFIQALAFLISPIRWLARG-GIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566677999999999999988554344444433 23346789999999999999999999999999999999999
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.41 E-value=3.8e-06 Score=65.07 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHH
Q psy7523 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAE 124 (179)
Q Consensus 45 ~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~ 124 (179)
+..+..+.++++++|-.+++..+.+.|++|++.+-++.-++++|++..+..... ..... -..+...|.+++++..
T Consensus 9 ~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~---~~~~~--~~~~s~lC~~Qafliq 83 (303)
T PF05462_consen 9 LYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIM---TLSPS--AGENSFLCQFQAFLIQ 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---Hhccc--CCCCCcchhhHhHHHH
Confidence 345666778889999999999999999999999999889999999877653321 11121 1235789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcC
Q psy7523 125 TSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177 (179)
Q Consensus 125 ~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p 177 (179)
++..++.+-.++||++=|..+++... ..+|.-..-...+|.++++.++.
T Consensus 84 ~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i 132 (303)
T PF05462_consen 84 FFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVI 132 (303)
T ss_pred HhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877422 23445556778889998887653
No 16
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.29 E-value=4.1e-05 Score=59.52 Aligned_cols=130 Identities=18% Similarity=0.116 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhh---ccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHH
Q psy7523 42 VIPMTALYSLILFTGLIGNVVTCIVIA---RNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVL 118 (179)
Q Consensus 42 ~~~~~~~~~~~~~~g~i~N~~vi~~~~---~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~ 118 (179)
.....++..+..++|++||..+..+.. ++++.-+|.+..+.+||+++++.-.............. +....+..++.
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFP-NIYFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-hhhhhhhHHHH
Confidence 344566788889999999999888774 23333478899999999999987666444444444433 22335678899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc----ccccchhhhhhhhHHhhHHHH
Q psy7523 119 RGLAAETSANATVLTITAFTVERYFAICHPFWS----HSLSKLSRAIRLILVIWIISL 172 (179)
Q Consensus 119 ~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~----~~~~~~~~~~~~~~~~w~~~~ 172 (179)
..+...+....+.+..+++++-=|+-|.+.-+. .|++=++....++.+.+++++
T Consensus 85 ~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~ 142 (303)
T PF05296_consen 85 IDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISF 142 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877765431 111112223445566777776
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.27 E-value=1.7e-05 Score=61.83 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHH
Q psy7523 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAE 124 (179)
Q Consensus 45 ~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~ 124 (179)
.+..+.+.+++-.+.....+.++.+++..|.+.+-++.-|++.|+......-.........+..+......-.+.|....
T Consensus 35 ~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i~G~~~~ 114 (313)
T PF10321_consen 35 LGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYIMGCIAL 114 (313)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhhhhccch
Confidence 44566777777788888889988888877888999999999999988654222222222222111112233356666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhh
Q psy7523 125 TSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164 (179)
Q Consensus 125 ~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~ 164 (179)
.+..++......++++|...+..|.+......+++....+
T Consensus 115 ~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l 154 (313)
T PF10321_consen 115 GSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVL 154 (313)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeee
Confidence 7788888889999999999999987766665655544433
No 18
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.26 E-value=1.2e-05 Score=61.34 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC-Cch-hhhhHHHhhH
Q psy7523 44 PMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYP-YVF-GETFCVLRGL 121 (179)
Q Consensus 44 ~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~-~~~-~~~~C~~~~~ 121 (179)
....+..+...+....|...+..+.+.|+.|++...++--..+.|.+.+....+........... ... ....-...+.
T Consensus 7 iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~ 86 (273)
T PF10316_consen 7 IVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGW 86 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhh
Confidence 34456677777889999999988875555455555566668899999999876666655543211 111 1122234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHh
Q psy7523 122 AAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVI 167 (179)
Q Consensus 122 ~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~ 167 (179)
...............||+||..|+..|..|++.+.+-........+
T Consensus 87 p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~ 132 (273)
T PF10316_consen 87 PSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIA 132 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHH
Confidence 5556667778889999999999999999998887765544444333
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.02 E-value=0.00059 Score=53.56 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHH---h---cCCCchhhhhHHHhh
Q psy7523 47 ALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIW---S---RYPYVFGETFCVLRG 120 (179)
Q Consensus 47 ~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~---~---~~~~~~~~~~C~~~~ 120 (179)
.+-.+++++|++.++..+....+++..|.-..+++....++.++.++.-+........ . +-+...+...|...-
T Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR 100 (324)
T PF10292_consen 21 IFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILR 100 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHH
Confidence 4577888889999988888888888888777888888999999887764433332221 1 112334667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHh
Q psy7523 121 LAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLL 173 (179)
Q Consensus 121 ~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~ 173 (179)
....++.....++..++++||++|..+.-+|.+..+ .-...+....|.++..
T Consensus 101 ~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~-~~Gi~l~~~qi~is~~ 152 (324)
T PF10292_consen 101 IPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGK-WLGILLAFFQILISLL 152 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCc-cHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887633 3333444444555544
No 20
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.75 E-value=0.0011 Score=51.26 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhccCCC-CchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC----------CchhhhhH
Q psy7523 48 LYSLILFTGLIGNVVTCIVIARNKHM-HNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYP----------YVFGETFC 116 (179)
Q Consensus 48 ~~~~~~~~g~i~N~~vi~~~~~~~~~-~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~----------~~~~~~~C 116 (179)
++.+.+.+|++.|.+.++.+.++... -+...+++.|-|+.|++.++....... ....+.. -..|...|
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHHH
Confidence 46778889999999999988765443 366689999999999988876433222 2222211 12467888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhh
Q psy7523 117 VLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCA 175 (179)
Q Consensus 117 ~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~ 175 (179)
.....+...+...+.+++..--..||..+.++-. ++++....+.+.+..++...
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~ 136 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSML 136 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888899999998632 55666666666666665543
No 21
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.66 E-value=0.00011 Score=55.79 Aligned_cols=101 Identities=18% Similarity=0.288 Sum_probs=75.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-
Q psy7523 73 MHNATNYYLFSLAVSDLLLLVT-GLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFW- 150 (179)
Q Consensus 73 ~~~~~~~~l~~Lai~dl~~~~~-~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~- 150 (179)
..+|.+..+.+||++|.+..+. ++|.... .... +. +++.+||+..++..++...|+++.+.+++-+-+.+.....
T Consensus 7 r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~-~~-~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~ 83 (265)
T PF03402_consen 7 RLKPIDLILIHLALANILVLLSRGIPQTMA-FFGW-KF-FDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSR 83 (265)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhc-cc-CCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCch
Confidence 3578899999999999988876 6775433 3333 22 4889999999999999999999999999977766664322
Q ss_pred --cccccchhhhhhhhHHhhHHHHhhhc
Q psy7523 151 --SHSLSKLSRAIRLILVIWIISLLCAI 176 (179)
Q Consensus 151 --~~~~~~~~~~~~~~~~~w~~~~~~~~ 176 (179)
..|.+.+|.....+...|++..++..
T Consensus 84 w~~lK~k~pk~i~~~~~~~Wilnlli~~ 111 (265)
T PF03402_consen 84 WAELKVKAPKYIGPSCLFCWILNLLINI 111 (265)
T ss_pred hhhhhhhcCCccccHHHHHHHHHHhhhc
Confidence 22334455566677888998877653
No 22
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.60 E-value=0.00034 Score=53.37 Aligned_cols=107 Identities=11% Similarity=0.037 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhHHhhccCC--C-CchHHHHHHHHHHHHHHHHhhhhHH-HHHHH-------HhcCCCchhhhhHHHhh
Q psy7523 52 ILFTGLIGNVVTCIVIARNKH--M-HNATNYYLFSLAVSDLLLLVTGLPV-EIYYI-------WSRYPYVFGETFCVLRG 120 (179)
Q Consensus 52 ~~~~g~i~N~~vi~~~~~~~~--~-~~~~~~~l~~Lai~dl~~~~~~~p~-~~~~~-------~~~~~~~~~~~~C~~~~ 120 (179)
-++.+++.+..++.++.++|+ . +++.+.+...-++.|++.-+...+. .+... ..... ........+..
T Consensus 7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~-~~~~~~l~~~~ 85 (275)
T PF02118_consen 7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFF-ENPPFFLNIFY 85 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHH-cCCcHHHHHHH
Confidence 345677778888888877766 3 6788877777777777665443222 11111 00000 11334566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhh
Q psy7523 121 LAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSR 159 (179)
Q Consensus 121 ~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~ 159 (179)
++......++..+...+++||+-++..|.+|++..++..
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~ 124 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY 124 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh
Confidence 788889999999999999999999999999999887554
No 23
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=96.81 E-value=0.0087 Score=43.41 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=32.7
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q psy7523 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHS 153 (179)
Q Consensus 111 ~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~ 153 (179)
..-..|.+..........+.-..-+++|++||..|.+..|-+.
T Consensus 112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~~ 154 (226)
T PF06681_consen 112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLSV 154 (226)
T ss_pred EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccCCc
Confidence 4668998888777776666666677899999999998655443
No 24
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=96.77 E-value=0.00074 Score=50.52 Aligned_cols=116 Identities=17% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHHHHH
Q psy7523 55 TGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTI 134 (179)
Q Consensus 55 ~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~ 134 (179)
+.+++-.+.+..+...|++|+..+....||++++++..+..+.. . ....+......+..|.....+..++..++..-+
T Consensus 13 ~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~-~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~Wm 90 (242)
T PF00002_consen 13 LSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-I-SQTFSPISTTNHCLCRAIAILLHYFFLASFFWM 90 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-h-hhccccccccccccchhhhhHhHHHHHHHHHHH
Confidence 33444444444444556677777888899999998876653211 1 111110100122359999999999999999999
Q ss_pred HHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhc
Q psy7523 135 TAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAI 176 (179)
Q Consensus 135 ~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 176 (179)
.+.+++-|..+.++.. ..+++........|.++.++..
T Consensus 91 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~ 128 (242)
T PF00002_consen 91 LVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVV 128 (242)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeee
Confidence 9999999999887622 1234555667778888776654
No 25
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=96.57 E-value=0.027 Score=42.83 Aligned_cols=100 Identities=10% Similarity=0.289 Sum_probs=71.9
Q ss_pred CchHHHHHHHHHHHHHHHHhh----hhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7523 74 HNATNYYLFSLAVSDLLLLVT----GLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPF 149 (179)
Q Consensus 74 ~~~~~~~l~~Lai~dl~~~~~----~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~ 149 (179)
+-+.-.++..|.++-++.... -.|-.+.....+ +. .....-.+..+...++.++-.++.+.+|++|+.......
T Consensus 46 ~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~-~~-~~s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~ 123 (305)
T PF04789_consen 46 PMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITK-EF-VQSELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRN 123 (305)
T ss_pred cchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhH-HH-hccchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehh
Confidence 456788999999988877554 445555444443 21 234556778889999999999999999999987776544
Q ss_pred ccccccchhhhhhhhHHhhHHHHhhh
Q psy7523 150 WSHSLSKLSRAIRLILVIWIISLLCA 175 (179)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~w~~~~~~~ 175 (179)
+-.+...+.-..+-+..+|++++.+.
T Consensus 124 ~t~~~F~s~~iyiWL~~vWils~~v~ 149 (305)
T PF04789_consen 124 LTDKVFESPVIYIWLLLVWILSIGVV 149 (305)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHH
Confidence 44445556677788889999988753
No 26
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.48 E-value=0.14 Score=40.31 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhccCCCCchH-HHHHHHHHHHHHHHHhhh--hHHHHHHHHh--cC--CCchhhhhHH
Q psy7523 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNAT-NYYLFSLAVSDLLLLVTG--LPVEIYYIWS--RY--PYVFGETFCV 117 (179)
Q Consensus 45 ~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~-~~~l~~Lai~dl~~~~~~--~p~~~~~~~~--~~--~~~~~~~~C~ 117 (179)
...+..++.+++.++....+-.+.++.-.++++ .+++.+|..+++=..... -...+..... +. +..+....|.
T Consensus 23 ~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~ 102 (328)
T PF02117_consen 23 NQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECF 102 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCcee
Confidence 345667777788888888888888887777655 455667777776332221 1111111111 11 2345678899
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q psy7523 118 LRGLAAETSANATVLTITAFTVERYFAICHPFWSH 152 (179)
Q Consensus 118 ~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~ 152 (179)
.......++.....+...++.+||.+|...|-.++
T Consensus 103 ~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 103 PYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 88888888888999999999999999999985544
No 27
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=96.16 E-value=0.0027 Score=44.10 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 121 LAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 121 ~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
....++.....+..+.|++||-..+.+|.+.+.+.|.+|.+.-|.+..++.+..-+.|
T Consensus 49 L~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIP 106 (153)
T PF03383_consen 49 LFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIP 106 (153)
T ss_pred eeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhh
Confidence 4566777778888899999999999999997778999999999988777777655544
No 28
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=94.72 E-value=0.58 Score=36.17 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhhccCCC-CchHHHHHHHH----HHHHHHHHhhhhHHHHHHHHhcCCC-ch--hhhhHHHh
Q psy7523 48 LYSLILFTGLIGNVVTCIVIARNKHM-HNATNYYLFSL----AVSDLLLLVTGLPVEIYYIWSRYPY-VF--GETFCVLR 119 (179)
Q Consensus 48 ~~~~~~~~g~i~N~~vi~~~~~~~~~-~~~~~~~l~~L----ai~dl~~~~~~~p~~~~~~~~~~~~-~~--~~~~C~~~ 119 (179)
..=.+.++++.-|....+.+.++... .+.....+.++ .+.|+..+....|....+......- .. -+.-..++
T Consensus 9 ~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~~q 88 (302)
T PF10318_consen 9 VLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTPIQ 88 (302)
T ss_pred HHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChHHH
Confidence 44556677888898888877655332 23444444443 3578888888888777666543221 11 12235666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy7523 120 GLAAETSANATVLTITAFTVERYFAICHPFW 150 (179)
Q Consensus 120 ~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~ 150 (179)
.++..........+.+.+--+||.++..+-+
T Consensus 89 ~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~ 119 (302)
T PF10318_consen 89 FYIGVTLLAFVGVSILSLFENRYQIIIRNRS 119 (302)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhcccc
Confidence 6777777777788888888999999997644
No 29
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=94.22 E-value=0.05 Score=42.22 Aligned_cols=109 Identities=11% Similarity=0.147 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhHHhhccCCCC-chHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc---------CCCchhhhhHHHh
Q psy7523 50 SLILFTGLIGNVVTCIVIARNKHMH-NATNYYLFSLAVSDLLLLVTGLPVEIYYIWSR---------YPYVFGETFCVLR 119 (179)
Q Consensus 50 ~~~~~~g~i~N~~vi~~~~~~~~~~-~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~---------~~~~~~~~~C~~~ 119 (179)
-+.++++++.|.+.++.+.++.+.+ ..-..++...|+.|++.+..-....-.....+ .++..+.......
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 3456788999999999887654433 22345666688888888776332222111111 1111222233333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchh
Q psy7523 120 GLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLS 158 (179)
Q Consensus 120 ~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~ 158 (179)
......+...+...++.-=+.||.++++|-+.+...+++
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f~~~~ 124 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYFSGWR 124 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeeccchhhccccccc
Confidence 334444444444455555669999999997654444443
No 30
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.10 E-value=1.5 Score=32.78 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=43.7
Q ss_pred CchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhh
Q psy7523 109 YVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSR 159 (179)
Q Consensus 109 ~~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~ 159 (179)
...+...+|.......+.++.+.+.-..+++||++|....-+|.+.++.-.
T Consensus 78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~LG 128 (236)
T PF02175_consen 78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTLLG 128 (236)
T ss_pred EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCceeeh
Confidence 344667889999999999999999999999999999999988888666443
No 31
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=93.14 E-value=2.7 Score=33.77 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhhccCC----CC--chHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC----------ch
Q psy7523 48 LYSLILFTGLIGNVVTCIVIARNKH----MH--NATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPY----------VF 111 (179)
Q Consensus 48 ~~~~~~~~g~i~N~~vi~~~~~~~~----~~--~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~----------~~ 111 (179)
+.+.-+.+|+.|-++-++--.|... .+ ....-.+..|+++|++.|+..+............. ..
T Consensus 32 vCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~w 111 (405)
T PF02101_consen 32 VCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIW 111 (405)
T ss_pred hHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccc
Confidence 3444445555555555553322111 01 12245778899999999988776666555433111 01
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7523 112 GETFCVLRGLAAETSANATVLTITAFTVERYFAICH 147 (179)
Q Consensus 112 ~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~ 147 (179)
....|.....-..++..++.+-+.+-|+|-|+.+.+
T Consensus 112 p~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 112 PAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 346888777777778888888999999999887765
No 32
>KOG4564|consensus
Probab=92.81 E-value=4.9 Score=33.37 Aligned_cols=125 Identities=15% Similarity=0.120 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC-----------CchhhhhH
Q psy7523 48 LYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYP-----------YVFGETFC 116 (179)
Q Consensus 48 ~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~-----------~~~~~~~C 116 (179)
++.+=.-+.++.=.+.+.++..-|++|-.+|++-.||-++=++-+...+.....-.....+ -..+...|
T Consensus 150 lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C 229 (473)
T KOG4564|consen 150 LYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGC 229 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhH
Confidence 3333333334444444555556677888899999999998888777755554433322110 01356899
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhc
Q psy7523 117 VLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAI 176 (179)
Q Consensus 117 ~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 176 (179)
+....+...+..++.+-+.+=.+.=|-.+..-.... +++...-..+.|.+...+..
T Consensus 230 k~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~se----r~~~~~y~~iGWG~P~v~v~ 285 (473)
T KOG4564|consen 230 KLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFSE----RRYFWLYLLIGWGVPAVFVV 285 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeccC----ccHHHHHHHHhhCCcHHHhh
Confidence 998888888888777777666665554444422211 34555666777777666544
No 33
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=92.34 E-value=2.3 Score=33.17 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhcc-CCCCchHHHHHH---HHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhH------
Q psy7523 47 ALYSLILFTGLIGNVVTCIVIARN-KHMHNATNYYLF---SLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFC------ 116 (179)
Q Consensus 47 ~~~~~~~~~g~i~N~~vi~~~~~~-~~~~~~~~~~l~---~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C------ 116 (179)
..+=+++.+.++.|.+.++.+..+ ++..+-+++++. ...++|+-.....-|..+.+..... ..| ..|
T Consensus 13 ~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy--~~G-~l~~~f~i~ 89 (303)
T PF10327_consen 13 NYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY--CVG-FLARYFGIS 89 (303)
T ss_pred HHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE--EEe-ehhhcCCCc
Confidence 467788999999999999977654 333333333222 3457899888887888887776542 111 223
Q ss_pred -HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q psy7523 117 -VLRGLAAETSANATVLTITAFTVERYFAICHPFWSHS 153 (179)
Q Consensus 117 -~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~ 153 (179)
.....+..+......-.++.--+.|+.++.+..+..+
T Consensus 90 ~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~ 127 (303)
T PF10327_consen 90 SHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV 127 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 3333344444444455555556688999999875433
No 34
>KOG4193|consensus
Probab=88.22 E-value=6.3 Score=33.95 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=44.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhh
Q psy7523 115 FCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCA 175 (179)
Q Consensus 115 ~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~ 175 (179)
.|....++..++..++.+-+..++++-|..++.-. +....++........|...+++.
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf---~~~~~~~~l~~~~~gwg~Pavvv 442 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVF---RSRPRRRKLLYSLYGWGVPAVVV 442 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHhhhhHHHH
Confidence 79999999999999999999999999998666543 33344444445468888777654
No 35
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=86.98 E-value=14 Score=29.56 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHH---HHHhhhhHHHHHHHHh-c------CCC
Q psy7523 40 YIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDL---LLLVTGLPVEIYYIWS-R------YPY 109 (179)
Q Consensus 40 ~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl---~~~~~~~p~~~~~~~~-~------~~~ 109 (179)
........+-.++.+++..-......++.|.|..+.-.+++.......-+ +.-....|........ + .+|
T Consensus 24 ~~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~ 103 (365)
T PF03125_consen 24 WFYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQW 103 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhh
Confidence 33444445556666666666666677777777776555554444333222 2222223333321110 0 001
Q ss_pred c-------------hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q psy7523 110 V-------------FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSL 154 (179)
Q Consensus 110 ~-------------~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~ 154 (179)
. .+...-.+.+++..-.++...+.+.++++||..|...--.|.+.
T Consensus 104 ~t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 104 WTDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred hccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 01122344555666666777889999999999999998777764
No 36
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=85.42 E-value=12 Score=29.37 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhHHhhccCCCC-chHHHHHHHHHHHHHHHHhhh--hHHHHHHHH------hcCCCchhhhhHHHhhH
Q psy7523 51 LILFTGLIGNVVTCIVIARNKHMH-NATNYYLFSLAVSDLLLLVTG--LPVEIYYIW------SRYPYVFGETFCVLRGL 121 (179)
Q Consensus 51 ~~~~~g~i~N~~vi~~~~~~~~~~-~~~~~~l~~Lai~dl~~~~~~--~p~~~~~~~------~~~~~~~~~~~C~~~~~ 121 (179)
+.+++..+.|-+-++.+..+|+.+ ..-.++++.-|+-|++..+.- .|.-+.... ..+.|-.....=.....
T Consensus 13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~l 92 (310)
T PF10319_consen 13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLL 92 (310)
T ss_pred HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHH
Confidence 455677889999999888777765 333577778999999888763 232221110 01111111111111111
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhccCccccccchhh
Q psy7523 122 AAETSANATVLTITAF-TVERYFAICHPFWSHSLSKLSR 159 (179)
Q Consensus 122 ~~~~~~~~s~~~~~~i-a~~R~~~v~~p~~~~~~~~~~~ 159 (179)
....+..+..+-++.. =+.||+++++|-.-++...+..
T Consensus 93 s~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~g 131 (310)
T PF10319_consen 93 SIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYG 131 (310)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHH
Confidence 2222333333333333 4699999999865555443333
No 37
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=68.94 E-value=55 Score=25.73 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=51.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523 114 TFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178 (179)
Q Consensus 114 ~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 178 (179)
..=++..+..+...+.+....+..++-|.+.+..|-++++..+ +-.+...-++.+++++.+.|+
T Consensus 101 ~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~-~i~~~~~P~i~i~p~~~~f~~ 164 (307)
T PF10322_consen 101 HFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICR-KIFRIWIPFIFIYPFCFTFPM 164 (307)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHH-hHHHHHHHHHHHHHHHHHHHc
Confidence 4447778888899999999999999999999999987765433 445667777888888888775
No 38
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=67.23 E-value=6.1 Score=26.51 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhHHhhccCCCCch
Q psy7523 54 FTGLIGNVVTCIVIARNKHMHNA 76 (179)
Q Consensus 54 ~~g~i~N~~vi~~~~~~~~~~~~ 76 (179)
+.|++|=++.+...++++++|.+
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 35666655555555555444443
No 39
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=52.82 E-value=65 Score=21.33 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy7523 39 LYIVIPMTALYSLILFTGLIGNVVTCI 65 (179)
Q Consensus 39 ~~~~~~~~~~~~~~~~~g~i~N~~vi~ 65 (179)
.+..+.++++..+++.+.++..++...
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~ 66 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFF 66 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555544444444333
No 40
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=52.48 E-value=1.1e+02 Score=23.74 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q psy7523 129 ATVLTITAFTVERYFAICHP 148 (179)
Q Consensus 129 ~s~~~~~~ia~~R~~~v~~p 148 (179)
.-+|.++...+||++...-.
T Consensus 52 glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 52 GLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 35667789999999877654
No 41
>PF15383 TMEM237: Transmembrane protein 237
Probab=48.99 E-value=1.2e+02 Score=23.20 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhc
Q psy7523 135 TAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAI 176 (179)
Q Consensus 135 ~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 176 (179)
++=++|||-.=.....+.+...+.....+.+++|+.+++.++
T Consensus 153 ~VSafDr~dl~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsl 194 (253)
T PF15383_consen 153 TVSAFDRYDLAHFSMAHLRGFLKLDPGALAILLYFIALVLSL 194 (253)
T ss_pred HHhhhhhHHhhcccHHHHHhhhccCchHHHHHHHHHHHHHHH
Confidence 344678875444433333444445555666777888877653
No 42
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=42.80 E-value=1.6e+02 Score=22.86 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=57.7
Q ss_pred HHHHHHHhhHHhh-ccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhhhHHHhhHHHHHHHHHHHHHH
Q psy7523 56 GLIGNVVTCIVIA-RNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTI 134 (179)
Q Consensus 56 g~i~N~~vi~~~~-~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~ 134 (179)
+.++..+.+..+. +-|....+.-.++..+.+.|+...+-. ++..-...+|. ...|++..-+.......-....
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INa----iIW~~n~~~~~--~~wCDI~~kl~~~~~~g~~~a~ 77 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINA----IIWRDNDINWW--PVWCDISTKLIIGSSVGIPAAS 77 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhh----hhcCCCCCccC--ceeeeehHHHHHHHHHHHHHHH
Confidence 3444444444432 223333566778888888888776653 22222222222 3789888777777766655555
Q ss_pred HHHHHHHHHHHhccCcccc--ccchhhhhhhhHHhhHHHHhh
Q psy7523 135 TAFTVERYFAICHPFWSHS--LSKLSRAIRLILVIWIISLLC 174 (179)
Q Consensus 135 ~~ia~~R~~~v~~p~~~~~--~~~~~~~~~~~~~~w~~~~~~ 174 (179)
++|+-.=+ .|..+-+... ..++|+..+=..+++.+.++.
T Consensus 78 lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~ 118 (283)
T PF02076_consen 78 LCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQ 118 (283)
T ss_pred HHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 55543333 2333322221 122445555555666555544
No 43
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=42.61 E-value=33 Score=27.48 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhccCCCC
Q psy7523 46 TALYSLILFTGLIGNVVTCIVIARNKHMH 74 (179)
Q Consensus 46 ~~~~~~~~~~g~i~N~~vi~~~~~~~~~~ 74 (179)
++..+++.++.++.-+++++.++|+|+.+
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45567777778888888888888877754
No 44
>PTZ00046 rifin; Provisional
Probab=39.72 E-value=39 Score=27.14 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhccCCCC
Q psy7523 46 TALYSLILFTGLIGNVVTCIVIARNKHMH 74 (179)
Q Consensus 46 ~~~~~~~~~~g~i~N~~vi~~~~~~~~~~ 74 (179)
++..+++.++-++.-+++++.++|+|+.+
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45567777788888888888888877754
No 45
>KOG3609|consensus
Probab=38.50 E-value=3e+02 Score=24.90 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=45.3
Q ss_pred hHHHHHHHHhcCCCchhhhhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhh
Q psy7523 96 LPVEIYYIWSRYPYVFGETFCV-LRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLC 174 (179)
Q Consensus 96 ~p~~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~ 174 (179)
.|.....++.......|..+|+ +.-|+.....+.-.+.++.++--|... .+. ++..-..-...=..+..|++++++
T Consensus 323 ~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~--~~~-~~~~g~~p~~vE~li~~wV~G~iw 399 (822)
T KOG3609|consen 323 FPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFY--FAW-TDSRGVTPQALEILIYLWVMGLIW 399 (822)
T ss_pred hHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhh-hcccCCCCcHHHHHHHHHHHHHHH
Confidence 4444444444334456878884 778888888777777777776555333 222 222222234445677889998876
Q ss_pred h
Q psy7523 175 A 175 (179)
Q Consensus 175 ~ 175 (179)
.
T Consensus 400 ~ 400 (822)
T KOG3609|consen 400 E 400 (822)
T ss_pred H
Confidence 3
No 46
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=35.03 E-value=2.3e+02 Score=22.53 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=45.8
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhh
Q psy7523 112 GETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCA 175 (179)
Q Consensus 112 ~~~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~ 175 (179)
....|.+...+.+++..++..--+.+++.=|++......+.... ++....=.++|.+..+..
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~--~~s~yfH~~aW~iP~~~t 151 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIE--KKSSYFHLVAWGIPAVLT 151 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhh--hhcchhhhHHhhhhHHHH
Confidence 45799999998888888888888888998888887755444432 445555677888776643
No 47
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=34.30 E-value=55 Score=18.61 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhHHhhc
Q psy7523 49 YSLILFTGLIGNVVTCIVIAR 69 (179)
Q Consensus 49 ~~~~~~~g~i~N~~vi~~~~~ 69 (179)
.+++.+--++||+.++-.--+
T Consensus 8 IIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHhHHHHHHHhcc
Confidence 344444458899988876644
No 48
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.65 E-value=1.2e+02 Score=21.51 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhccC
Q psy7523 46 TALYSLILFTGLIGNVVTCIVIARNK 71 (179)
Q Consensus 46 ~~~~~~~~~~g~i~N~~vi~~~~~~~ 71 (179)
..+|.++++.+++.=.+++-+++.+|
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566666666666566666664444
No 49
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=31.32 E-value=1.3e+02 Score=18.42 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhH
Q psy7523 53 LFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLP 97 (179)
Q Consensus 53 ~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p 97 (179)
.++|+++=...+-++.-+.+.++-.++-.+|-+++.++....--|
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P 48 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSP 48 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCc
Confidence 445666666666666666666666677777777777666554333
No 50
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=28.04 E-value=1.8e+02 Score=19.78 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCC
Q psy7523 40 YIVIPMTALYSLILFTGLIGNVVTCIVIARNKHM 73 (179)
Q Consensus 40 ~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~ 73 (179)
...+.+.++..+.+.+.+.|-...+.-..|++++
T Consensus 98 t~Yia~~~il~il~~i~is~~~~~~yr~~r~~~~ 131 (139)
T PHA03099 98 TSYIPSPGIVLVLVGIIITCCLLSVYRFTRRTKL 131 (139)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhheeeecccC
Confidence 3444444444444444444444444444444443
No 51
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=27.08 E-value=86 Score=20.12 Aligned_cols=7 Identities=43% Similarity=0.748 Sum_probs=3.1
Q ss_pred HhhccCC
Q psy7523 66 VIARNKH 72 (179)
Q Consensus 66 ~~~~~~~ 72 (179)
++.|.|+
T Consensus 85 VILRer~ 91 (101)
T PF06024_consen 85 VILRERQ 91 (101)
T ss_pred EEEeccc
Confidence 3445444
No 52
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=26.21 E-value=2.9e+02 Score=20.86 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q psy7523 133 TITAFTVERYFAI 145 (179)
Q Consensus 133 ~~~~ia~~R~~~v 145 (179)
++..+..||++.=
T Consensus 144 ~l~~~~~D~~v~~ 156 (232)
T PF10329_consen 144 SLWGILADRYVEW 156 (232)
T ss_pred HHHHHHHHHHHHh
Confidence 3456677998863
No 53
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.51 E-value=63 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.173 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhccCCC
Q psy7523 47 ALYSLILFTGLIGNVVTCIVIARNKHM 73 (179)
Q Consensus 47 ~~~~~~~~~g~i~N~~vi~~~~~~~~~ 73 (179)
+..+++.++-++.=+++++.++|+|+.
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRK 284 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777777766653
No 54
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=22.64 E-value=4.5e+02 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHHHHHhh
Q psy7523 75 NATNYYLFSLAVSDLLLLVT 94 (179)
Q Consensus 75 ~~~~~~l~~Lai~dl~~~~~ 94 (179)
.....+...|.+.-++.+..
T Consensus 77 ~s~~c~~~sLiiltL~~~aa 96 (418)
T cd07912 77 HSICCLKWSLVIATLLCCAA 96 (418)
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 33456667777777776554
No 55
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=20.92 E-value=1.4e+02 Score=15.28 Aligned_cols=14 Identities=14% Similarity=0.534 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q psy7523 47 ALYSLILFTGLIGN 60 (179)
Q Consensus 47 ~~~~~~~~~g~i~N 60 (179)
.++..++++|.+.|
T Consensus 13 ~ffv~LFifGflsn 26 (36)
T PF02532_consen 13 IFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccCC
Confidence 34455555665554
Done!