RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7523
(179 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 96.6 bits (241), Expect = 5e-25
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 65 IVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAE 124
+VI R K + TN +L +LAV+DLL L+T P +YY+ + FG+ C L G
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVG-GDWPFGDALCKLVGFLFV 59
Query: 125 TSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV 179
+ A++L +TA +++RY AI HP + RA LILV+W+++LL ++P +
Sbjct: 60 VNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPL 114
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 65.2 bits (159), Expect = 6e-13
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIW 104
+ +YS I F GL+GN++ V+ + K + + YL +LAVSDLL ++T LP +IYY +
Sbjct: 43 LIVVYSTIFFFGLVGNIIVIYVLTKTK-IKTPMDIYLLNLAVSDLLFVMT-LPFQIYY-Y 99
Query: 105 SRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164
+ + FGE C + ++ IT +V+RY AI HP S+ ++ + +
Sbjct: 100 ILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVS 159
Query: 165 LVIWIISLLCAIP 177
LVIWIIS++ P
Sbjct: 160 LVIWIISIIETTP 172
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 56.2 bits (135), Expect = 1e-09
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 48 LYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRY 107
Y +I GL GN I+I K + T+ Y+F+LA+SDL+ ++ P IY + ++
Sbjct: 104 FYIIIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISDLIFVID-FPFIIYNEFDQW 161
Query: 108 PYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVI 167
+FG+ C + + + + IT +++RYFAI +P + I L ++
Sbjct: 162 --IFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIIS 219
Query: 168 WIISLLCAIP 177
WI+SL+ P
Sbjct: 220 WILSLIITSP 229
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 40.3 bits (94), Expect = 2e-04
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 48 LYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRY 107
Y L+ GLIGNV+ V+ + M + YLF++A+SD L+LV P I+ +
Sbjct: 34 FYILLFIFGLIGNVLVIAVLIVKRFMF-VVDVYLFNIAMSD-LMLVFSFPFIIHNDLNE- 90
Query: 108 PYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVI 167
++FGE C L + + +T +++RY + + + S +S ++ L +
Sbjct: 91 -WIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKS-ISLSVLLSVAA 148
Query: 168 WIISLLCAIP 177
W+ S++ ++P
Sbjct: 149 WVCSVILSMP 158
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 33.7 bits (78), Expect = 0.030
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 12/132 (9%)
Query: 51 LILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGL----PVEI--YYIW 104
LI G+I N + + + + N+ + A+S+ ++ L P+ +
Sbjct: 2 LISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSFL 61
Query: 105 SRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164
+ GL + LT ++ R+ A+ PF + + +I
Sbjct: 62 PELLNSH------IGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIII 115
Query: 165 LVIWIISLLCAI 176
IWII+++ +
Sbjct: 116 TFIWIIAIIIST 127
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 32.1 bits (73), Expect = 0.14
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 46 TALYSLILFTGLIGNVVTCI--VIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYI 103
T + LI+ G N++ + ++A H + Y+ +L +++LL + LP + +
Sbjct: 36 TFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFV-LP---FIM 91
Query: 104 WSRYPYVFGETF-CVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIR 162
S + G C L S T+ +RY I H S +
Sbjct: 92 LSNQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVI-HQRTRARSSAYRSTYK 150
Query: 163 LILVIWIISLLCAIP 177
++ + W SL+C+ P
Sbjct: 151 ILGLTWFASLICSGP 165
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 31.1 bits (70), Expect = 0.30
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
Query: 25 GNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSL 84
GNAS + P + A + + + L L +I V+ ++I HNAT++YL +L
Sbjct: 18 GNASCISTPTLKKAQILESAINGI-MLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITL 76
Query: 85 AVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFA 144
SD L ++ V + + F + FC S + ++ + RY
Sbjct: 77 FASDFLHMLC---VFFLTLNREALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKT 133
Query: 145 ICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV 179
+ + K + R I ++++ S +CAIP
Sbjct: 134 LHRR--KKNDKKNNHIGRNIGILFLASAMCAIPAA 166
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srsx is a
solo family amongst the superfamilies of
chemoreceptors. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'.
Length = 257
Score = 27.6 bits (62), Expect = 3.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 53 LFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLV 93
G+ GNV+ I+ + K + + +Y + ++DLL L
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLS 41
>gnl|CDD|145544 pfam02461, AMO, Ammonia monooxygenase. Ammonia monooxygenase plays
a key role in the nitrogen cycle and degrades a wide
range of hydrocarbons and halogenated hydrocarbons.
Length = 245
Score = 27.0 bits (60), Expect = 5.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 101 YYIWSRYPYVFGETFCVLRGLAAE 124
+ W R+ FG T CVL L E
Sbjct: 76 AFFWERFRLPFGATLCVLGLLIGE 99
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 27.1 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 27 ASVFAYPPKRDALYIVIPMTALYSLILF-TGLIGNVVTCIVIAR 69
AS + YP + +PM +Y L LF GL+ T +V+ R
Sbjct: 235 ASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRR 278
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 26.4 bits (59), Expect = 8.4
Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 10/130 (7%)
Query: 54 FTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYV--- 110
G I N+ I++ R ++ N + +A+ D++ ++ + I Y
Sbjct: 8 IIGFIINIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIISYENSECI 67
Query: 111 -FGETFCVLRGLAAETSANAT----VLTITAFTVERYFAICHPF--WSHSLSKLSRAIRL 163
VL E+ + + + R + +P LSK + +
Sbjct: 68 PPDSYLKVLLDWILESLQDISRRCSTWLGVFMALIRTLVVKNPMSNKIQKLSKPKFGLII 127
Query: 164 ILVIWIISLL 173
I++++I+SL
Sbjct: 128 IIIVFILSLP 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.442
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,205,640
Number of extensions: 847350
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 49
Length of query: 179
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 88
Effective length of database: 6,901,388
Effective search space: 607322144
Effective search space used: 607322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.3 bits)