RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7523
(179 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 140 bits (354), Expect = 7e-41
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
Query: 16 WLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHN 75
+D + S + + + + ++ A Y++I+ T ++GNVV +I +K M
Sbjct: 6 PVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRT 65
Query: 76 ATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTIT 135
TNY+L +LA ++ + V Y + +G +C + A++ ++T
Sbjct: 66 VTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE-WYYGLFYCKFHNFFPIAAVFASIYSMT 124
Query: 136 AFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
A +RY AI HP + +I VIW+++LL A PQ
Sbjct: 125 AVAFDRYMAIIHPL--QPRLSATATKVVICVIWVLALLLAFPQ 165
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 127 bits (320), Expect = 2e-35
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 4/177 (2%)
Query: 1 MHNGQLTAMNYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGN 60
+ + + + + + L + I LY + GL+GN
Sbjct: 86 LKLANEGKVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIV--GLYLAVCVGGLLGN 143
Query: 61 VVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRG 120
+ VI R+ M ATN Y+F+LA++D L+L+T LP + I + + FG C
Sbjct: 144 CLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGF-WPFGNALCKTVI 201
Query: 121 LAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
+ + T+TA +V+RY AICHP + + S+A + + IW ++ + +P
Sbjct: 202 AIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVP 258
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 116 bits (293), Expect = 4e-32
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 45 MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIW 104
+ A L++ G N +T V ++K + NY L +LAV+DL ++ G +Y
Sbjct: 41 LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL 100
Query: 105 SRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164
Y +VFG T C L G A + ++ +ERY +C P + + + AI +
Sbjct: 101 HGY-FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGV 158
Query: 165 LVIWIISLLCAIPQV 179
W+++L CA P +
Sbjct: 159 AFTWVMALACAAPPL 173
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 116 bits (291), Expect = 4e-31
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 25 GNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSL 84
G+ S+ + + + ALYS++ GL GN + VI R M ATN Y+F+L
Sbjct: 1 GSHSLCPQTGSPSMVTAIT-IMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNL 59
Query: 85 AVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFA 144
A++D L T LP + + FG C + + ++ T+ +V+RY A
Sbjct: 60 ALADALATST-LPFQSVNYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIA 117
Query: 145 ICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
+CHP + A + + WI+S +P
Sbjct: 118 VCHPVKALDFRTPRNAKIVNVCNWILSSAIGLP 150
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 111 bits (278), Expect = 3e-29
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Query: 11 YHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARN 70
Y +++ + S D ++ + +A + I + +YS+I TG++GN + +V+
Sbjct: 17 YTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQ 76
Query: 71 KHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANAT 130
K + + T+ Y L+V+DLL ++T LP + + FG C + + ++
Sbjct: 77 KKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVANWY--FGNFLCKAVHVIYTVNLYSS 133
Query: 131 VLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
V + +++RY AI H S KL + + +WI +LL IP
Sbjct: 134 VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 105 bits (263), Expect = 2e-27
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 32 YPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLL 91
+ DA+Y + + G GN + + + K + N ++ +LA SD
Sbjct: 26 FDQVPDAVYYS--LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTF 83
Query: 92 LVT-GLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFW 150
+ G P+ + + ++FG C + G +++T+ +++RY I P
Sbjct: 84 SLVNGFPLMTISCFLKK-WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMA 142
Query: 151 SHSLSKLSRAIRLILVIWIISLLCAIP 177
+ RA +I+ +W+ S+L AI
Sbjct: 143 ASKKMSHRRAFIMIIFVWLWSVLWAIG 169
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 99.4 bits (247), Expect = 5e-25
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 20 NFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNY 79
+ + + S+ P + + I + + +IGN++ + I N+H+ NY
Sbjct: 3 DSTDSSDNSLALTSPYKTFEVVFI--VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNY 60
Query: 80 YLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTV 139
+LFSLA +DL++ V + + Y Y + G C L +NA+V+ + +
Sbjct: 61 FLFSLACADLIIGVFSMNLYTLYTVIGY-WPLGPVVCDLWLALDYVVSNASVMNLLIISF 119
Query: 140 ERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
+RYF + P A +I W++S + P
Sbjct: 120 DRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAP 157
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 97.5 bits (242), Expect = 2e-24
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 42 VIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIY 101
++P+ + S I + N++ + + +H N Y+ SL+V+DL++ +P+ I
Sbjct: 8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL 67
Query: 102 YIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAI 161
Y+ + G C+ ++ A++ ++ ++RY ++ P +RA
Sbjct: 68 YLLMSK-WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRAS 126
Query: 162 RLILVIWIISLLCAIP 177
IL W +S L IP
Sbjct: 127 ATILGAWFLSFLWVIP 142
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 97.3 bits (242), Expect = 3e-24
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Query: 32 YPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLL 91
+ V+ M + SLI+ + GNV+ IA+ + + TNY++ SLA +DL++
Sbjct: 172 WDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVM 231
Query: 92 LVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWS 151
+ +P +I ++ FG +C A++ T+ V+RYFAI PF
Sbjct: 232 GLAVVPFGAAHILTKTWT-FGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 290
Query: 152 HSLSKLSRAIRLILVIWIISLLCAIP 177
SL ++A +IL++WI+S L +
Sbjct: 291 QSLLTKNKARVIILMVWIVSGLTSFL 316
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 97.1 bits (241), Expect = 3e-24
Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 4/163 (2%)
Query: 19 GNFSADGNASVFAY-PPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNAT 77
S+ N + A Y ++ + GN + C+ + + + + T
Sbjct: 14 SQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTT 73
Query: 78 NYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAF 137
NY + SLAV+DLL+ +P +Y + + F C + A++ + A
Sbjct: 74 NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAI 133
Query: 138 TVERYFAICHPFWSHSLSKLS---RAIRLILVIWIISLLCAIP 177
+++RY A+ P + S R +I +W+++ + P
Sbjct: 134 SIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP 176
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 96.9 bits (240), Expect = 5e-24
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 1 MHNGQLTAMNYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGN 60
+ + + +Y D + +++ G ++ A L V ++ LI ++ N
Sbjct: 27 VKAHRSSVSDYVNYDIIVRHYNYTGKLNISADKENSIKLTSV-----VFILICCFIILEN 81
Query: 61 VVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRG 120
+ + I + K H Y++ +LA+SDLL V + + Y LR
Sbjct: 82 IFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYK--LTPAQWFLRE 139
Query: 121 LAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
+ + +A+V ++ A +ERY + H+ S R LI W+ISL+
Sbjct: 140 GSMFVALSASVFSLLAIAIERYITMLKM-KLHNGSNNFRLFLLISACWVISLILGGL 195
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 94.8 bits (235), Expect = 2e-23
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 16 WLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHN 75
L N S + V V+ M + SLI+ + GNV+ IA+ + +
Sbjct: 18 LLAPNRSHAPDHDVTQQRD----EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQT 73
Query: 76 ATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSA-NATVLTI 134
TNY++ SLA +DL++ + +P +I + + FG +C + + A++ T+
Sbjct: 74 VTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFW-TSIDVLCVTASIETL 131
Query: 135 TAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
V+RYFAI PF SL ++A +IL++WI+S L +
Sbjct: 132 CVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 174
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 94.0 bits (233), Expect = 4e-23
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Query: 20 NFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNY 79
++ D +A P + + I ++GNV+ C + N ++ N TNY
Sbjct: 1 DYKDDDDAM--GQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNY 58
Query: 80 YLFSLAVSDLLLLVTGLPVEIYYI--WSRYPYVFGETFCVLRGLAAETSANATVLTITAF 137
++ SLA +D+ + V +P I + C+ +++ ++ A
Sbjct: 59 FVVSLAAADIAVGVLAIPFAITISTGF-----CAACHGCLFIACFVLVLTQSSIFSLLAI 113
Query: 138 TVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
++RY AI P + L +RA +I + W++S +
Sbjct: 114 AIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 153
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 93.6 bits (232), Expect = 5e-23
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 22 SADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYL 81
AD PP + + +T ++ + ++GNV+ C + N ++ N TNY++
Sbjct: 15 FADYKDDDDGAPP---IMGSSVYITVELAIAVLA-ILGNVLVCWAVWLNSNLQNVTNYFV 70
Query: 82 FSLAVSDLLLLVTGLPVEIYYI--WSRYPYVFGETFCVLRGLAAETSANATVLTITAFTV 139
SLA +D+ + V +P I + C+ +++ ++ A +
Sbjct: 71 VSLAAADIAVGVLAIPFAITISTGF-----CAACHGCLFIACFVLVLTQSSIFSLLAIAI 125
Query: 140 ERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
+RY AI P + L +RA +I + W++S +
Sbjct: 126 DRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 163
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 89.0 bits (221), Expect = 8e-22
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 43 IPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYY 102
M+ L +L++ + GNV+ I + + TN ++ SLA +DL++ + +P
Sbjct: 12 AGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATL 71
Query: 103 IWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIR 162
+ +G C L A++ T+ ++RY AI PF SL +RA
Sbjct: 72 VVRGTWL-WGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKV 130
Query: 163 LILVIWIISLLCAIP 177
+I +W IS L +
Sbjct: 131 IICTVWAISALVSFL 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 6e-04
Identities = 29/156 (18%), Positives = 45/156 (28%), Gaps = 56/156 (35%)
Query: 44 PMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYI 103
PM ++ + L V V N H+ + SL L+V+G P +Y
Sbjct: 337 PMLSI------SNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLY-- 387
Query: 104 WSRYPYVFGETFCV-LRGLAAETSANAT--------------VLTITAFTVERYFAICHP 148
+ LR A + + + L + + P
Sbjct: 388 ----------GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-----------P 426
Query: 149 FWSHSLSKLSRAIRLIL-------VIWIISLLCAIP 177
F SH L A LI V + + IP
Sbjct: 427 FHSHLLVP---ASDLINKDLVKNNVSFNAKDI-QIP 458
Score = 28.5 bits (63), Expect = 1.3
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 64/138 (46%)
Query: 67 IARN------KHMHNATNYYLFSLAVSDLLLLVTGLPVEIY---------YIWSRYPYVF 111
A++ H + Y FS+ L +V PV + I Y +
Sbjct: 1641 AAQDVWNRADNHFKDT---YGFSI-----LDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 112 GETFC--------VLRGLAAETS-----ANATVLTITAFT------VER----------- 141
ET + + + ++ + +L+ T FT +E+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 142 -----YFAICHPFWSHSL 154
FA HSL
Sbjct: 1753 IPADATFA------GHSL 1764
Score = 28.5 bits (63), Expect = 1.5
Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 52/179 (29%)
Query: 22 SADGNASVFA---------------------YPPKRDALYIVIPMTALYSLI-------- 52
+GNA + A Y L I L LI
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEK 207
Query: 53 LFT-GLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSR-YPYV 110
+FT GL N++ + N YL S+ +S L+ V L Y + ++ +
Sbjct: 208 VFTQGL--NILEWLENPSNTP----DKDYLLSIPISCPLIGVIQLAH--YVVTAKLLGFT 259
Query: 111 FGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWI 169
GE L+G T + ++T A W + +AI ++ +I
Sbjct: 260 PGELRSYLKGA---TGHSQGLVTAVAIAET-------DSWESFFVSVRKAITVLF--FI 306
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.2
Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 58/176 (32%)
Query: 4 GQLTAMNYHEEDWLDGNFSADGNASVF---AYPPKRDALYIVIPMTALYSLILFTGLIGN 60
++ +NY +L + Y +RD LY + A Y+
Sbjct: 84 EEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---------- 130
Query: 61 VVTCIVIARNKHMHNATNYYLFSLAVSDLLLL--VTGLPVEIYYIWSRYPYVFGETFCVL 118
++R + L L + +L+ V G G+T+
Sbjct: 131 ------VSRLQPYLKLRQA-LLELRPAKNVLIDGVLG---------------SGKTW--- 165
Query: 119 RGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLC 174
+A + + V F + FW L+ L V+ ++ L
Sbjct: 166 --VALDVCLSYKVQCKMDFKI---------FW---LN-LKNCNSPETVLEMLQKLL 206
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG,
Pro structure initiative; 1.70A {Shewanella oneidensis}
SCOP: a.35.1.6
Length = 166
Score = 26.7 bits (58), Expect = 3.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 22 SADGNASVFAYPPKRDALYIVIPMTALYS 50
+ DG ++F PKR ++V P A+Y+
Sbjct: 69 TTDGIEALFKKEPKRHLAFVVYPTQAIYT 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.442
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,812,489
Number of extensions: 155133
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 29
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.0 bits)