RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7523
         (179 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 66.9 bits (162), Expect = 4e-14
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 45  MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIW 104
           + A   L++  G   N +T  V  ++K +    NY L +LAV+DL ++  G    +Y   
Sbjct: 40  LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL 99

Query: 105 SRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164
             Y +VFG T C L G  A       + ++    +ERY  +C P  +    +    + + 
Sbjct: 100 HGY-FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVA 158

Query: 165 LVIWIISLLCAIPQ 178
               +     A P 
Sbjct: 159 FTWVMALACAAPPL 172


>d2ox6a1 a.35.1.6 (A:5-166) Hypothetical protein SO3848
          {Shewanella oneidensis [TaxId: 70863]}
          Length = 162

 Score = 26.5 bits (58), Expect = 1.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 22 SADGNASVFAYPPKRDALYIVIPMTALYS 50
          + DG  ++F   PKR   ++V P  A+Y+
Sbjct: 65 TTDGIEALFKKEPKRHLAFVVYPTQAIYT 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 682,892
Number of extensions: 28607
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 4
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.5 bits)