BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7530
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/33 (90%), Positives = 33/33 (100%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+MVTRTKKIFVGGLSAPTTLEDVK+YFEQFGP+
Sbjct: 112 KMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPI 144
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
S++ K+F+GGLS T+ E +++YF ++G +
Sbjct: 22 SEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDI 55
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 30/33 (90%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+MVTRTKKIFVGGLS TT+EDVK+YFEQFG V
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS TT E ++ YF QFG V
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEV 46
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 30/33 (90%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+MVTRTKKIFVGGLS TT+EDVK+YFEQFG V
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS TT E ++ YF QFG V
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEV 46
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 29/33 (87%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+MVTRTKKIFVGGLS TT+EDVK YFEQFG V
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS TT E ++ YF QFG V
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEV 46
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 29/33 (87%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+MVTRTKKIFVGGLSA T +EDVK YFEQFG V
Sbjct: 104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 136
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS T+ + +++YF +FG +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEI 47
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 29/33 (87%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+MVTRTKKIFVGGLSA T +EDVK YFEQFG V
Sbjct: 104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 136
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS T+ + +++YF +FG +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEI 47
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+TKKIFVGGL T E+ + YFE +GPV
Sbjct: 108 KTKKIFVGGLPPTLTDEEFRQYFEVYGPV 136
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
IN S+ K+FVGGLS T+ +D+K+YF +FG V
Sbjct: 65 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEV 101
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGGL+ T E ++ YF QFG +
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEI 185
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
IN S+ K+FVGGLS T+ +D+K+YF +FG V
Sbjct: 59 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEV 95
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 15 KKIFVGGLSAPT-TLEDVKNYFEQFGPV 41
KKIFVGGL+ + T E ++ YF +FG +
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEI 180
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++NY+EQ+G + T C
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTL--TDC 38
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGG+ T ++ YFE++G +
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKI 126
>sp|P34541|YNC8_CAEEL Putative RNA-binding protein R05D3.8 OS=Caenorhabditis elegans
GN=R05D3.8 PE=4 SV=3
Length = 311
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVY 42
K+IFV GL + TT VK YFEQFG +Y
Sbjct: 3 KRIFVQGLDSYTTESTVKKYFEQFGTLY 30
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++NY+EQ+G
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWG 45
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGG+ T +++YFE++G +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKI 138
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS TT +D+K+YF +FG V
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEV 123
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGGLS T E ++ YF FG V
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEV 208
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS TT +D+K+YF +FG V
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEV 123
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGGLS T E ++ YF FG V
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEV 208
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++NY+EQ+G
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWG 45
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGG+ T +++YFE++G +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKI 138
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++NY+EQ+G
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWG 45
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGG+ T +++YFE++G +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKI 138
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++NY+EQ+G
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWG 33
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGG+ T +++YFE++G +
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKI 126
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus
norvegicus GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++NY+EQ+G
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWG 45
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGG+ T +++YFE++G +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKI 138
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus
oedipus GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++NY+EQ+G
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWG 33
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS TT +D+K+YF +FG V
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDV 121
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGGLS T E ++ YF FG V
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEV 206
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGGLS TT E +K YF FG +
Sbjct: 119 KKVFVGGLSPETTEEQIKQYFGGFGEI 145
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGLS T+ +D+ Y +FG V
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEV 60
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGGLS T+ E +K YF FG +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEI 259
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
IN S+ K+F+GGLS T+ +D+ Y +FG V
Sbjct: 138 INASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEV 174
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 9/45 (20%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60
KIFVG LS TT E++++ F Q+G + + CD VKNFG
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKI--SECD-------IVKNFG 38
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGGLS T+ E +K YF FG +
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEI 140
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
IN S+ K+F+GGLS T+ +D+ Y +FG V
Sbjct: 19 INASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEV 55
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+F+GGL+ TT + +++YFEQFG V
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEV 189
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+T K+FVGG+ T E+ +N+F QFG V
Sbjct: 245 KTAKMFVGGVPGDCTEEEFRNFFNQFGRV 273
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGGLS TT E +K YF FG +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEI 137
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
IN S+ K+F+GGLS T+ +D+ Y +FG V
Sbjct: 16 INASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEV 52
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGGLS T+ E +K YF FG +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEI 162
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
++ S T K+F+GGLS T+ +D+ Y +FG V
Sbjct: 41 LDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEV 77
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+ I + VT+T + V GL TT +D+K+YF FG V
Sbjct: 95 VKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEV 131
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
R++K+FVG + + E+++ +F Q+G V
Sbjct: 189 RSRKVFVGRCTEDMSAEELRQFFSQYGEV 217
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGGLS TT E +K YF FG +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEI 137
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
IN S+ K+F+GGLS T+ +D+ Y +FG V
Sbjct: 16 INASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEV 52
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++N++EQ+G
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWG 33
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44
KK+FVGG+ T ++ YFE++G + T
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIEST 129
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KK+FVGGLS T+ E +K YF FG +
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEI 141
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
IN S+ K+F+GGLS T+ +D+ Y +FG V
Sbjct: 20 INASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEV 56
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++++FEQ+G + T C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTL--TDC 43
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKI 131
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++++FEQ+G + T C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTL--TDC 43
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKI 131
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++++FEQ+G + T C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTL--TDC 43
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKI 131
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus
GN=HNRNPA1 PE=1 SV=2
Length = 320
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++++FEQ+G + T C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTL--TDC 43
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKI 131
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++++FEQ+G + T C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTL--TDC 43
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKI 131
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++++FEQ+G + T C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTL--TDC 43
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKI 131
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
++ + R KIFVGGL+ + E++K YF QFG +
Sbjct: 126 VDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNI 162
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+K+FVGGLS TT ++++++F ++G +
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEI 82
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T + ++ YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKI 131
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT E ++ +FEQ+G
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWG 38
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+K+F+GGLS TT E ++++FEQ+G + T C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTL--TDC 43
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFEQ+G +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKI 131
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+K+F+GGL TT E +K +FEQ+G +
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEI 43
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTA 45
KK+FVGG+ D+++YF+Q+G V A
Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAA 138
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (Fragment) OS=Rattus
norvegicus GN=Hnrnpc PE=2 SV=1
Length = 158
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGGLS T E ++ YF FG V
Sbjct: 34 KKIFVGGLSPDTPEEKIREYFGGFGEV 60
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 2 AAFINISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
++ + + + V +T + V GL TT +D+K+YF FG V
Sbjct: 91 SSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEV 130
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+FVGGL TT E +++YF Q+G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>sp|Q76FK4|NOL8_HUMAN Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1
Length = 1167
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
TK+++VGGLS + D++N F +FG V
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEV 34
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT + ++ +FEQ+G
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWG 51
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
T+ +F+G L TT D++N F++FG +
Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEI 465
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
T+ +F+G L TT D++N F++FG +
Sbjct: 437 TRTLFIGNLEKTTTYHDLRNIFQRFGEI 464
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+KIFVGGL++ TT + ++ ++ QFG +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEI 49
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFG 39
+K+F+GGLS TT + ++ +FEQ+G
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWG 51
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
KKIFVGG+ T +++YFE +G +
Sbjct: 118 KKIFVGGIKEDTEEYHLRDYFEGYGKI 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,950,975
Number of Sequences: 539616
Number of extensions: 601989
Number of successful extensions: 2412
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2215
Number of HSP's gapped (non-prelim): 207
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)