Query psy7530
Match_columns 60
No_of_seqs 103 out of 1079
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:44:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149|consensus 99.5 5.8E-15 1.3E-19 94.0 4.5 50 10-60 8-57 (247)
2 PLN03134 glycine-rich RNA-bind 99.2 2.6E-11 5.5E-16 72.2 5.6 47 13-60 33-79 (144)
3 KOG0125|consensus 99.2 1.3E-11 2.9E-16 81.9 4.8 48 10-60 92-139 (376)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 1.1E-10 2.4E-15 75.7 6.4 45 15-60 270-314 (352)
5 PF00076 RRM_1: RNA recognitio 99.2 7.6E-11 1.7E-15 60.5 4.5 33 17-49 1-33 (70)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 9E-11 2E-15 76.1 5.5 46 14-60 3-48 (352)
7 KOG4205|consensus 99.1 7E-11 1.5E-15 77.9 4.9 47 13-60 5-51 (311)
8 TIGR01659 sex-lethal sex-letha 99.1 4.7E-10 1E-14 74.6 6.4 50 10-60 103-152 (346)
9 PLN03213 repressor of silencin 99.0 3.5E-10 7.6E-15 78.9 4.7 43 13-60 9-51 (759)
10 PLN03120 nucleic acid binding 99.0 1.2E-09 2.6E-14 70.7 4.9 36 14-49 4-39 (260)
11 TIGR01645 half-pint poly-U bin 98.9 1.4E-09 3.1E-14 76.8 5.2 47 13-60 106-152 (612)
12 KOG0126|consensus 98.9 1.5E-10 3.3E-15 72.2 -0.2 45 15-60 36-80 (219)
13 TIGR01659 sex-lethal sex-letha 98.9 3E-09 6.4E-14 70.8 5.3 38 12-49 191-228 (346)
14 KOG0107|consensus 98.9 2.1E-09 4.5E-14 66.6 4.1 43 13-55 9-51 (195)
15 KOG0109|consensus 98.9 1.1E-09 2.4E-14 72.2 2.8 34 15-48 3-36 (346)
16 PLN03121 nucleic acid binding 98.9 6.1E-09 1.3E-13 66.9 5.5 37 13-49 4-40 (243)
17 TIGR01645 half-pint poly-U bin 98.9 4.7E-09 1E-13 74.3 5.3 47 13-60 203-249 (612)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 3.5E-09 7.7E-14 72.4 4.5 35 14-48 2-36 (481)
19 COG0724 RNA-binding proteins ( 98.8 7.4E-09 1.6E-13 62.3 5.1 46 14-60 115-160 (306)
20 TIGR01622 SF-CC1 splicing fact 98.8 8.4E-09 1.8E-13 69.2 5.8 47 13-60 88-134 (457)
21 TIGR01642 U2AF_lg U2 snRNP aux 98.8 9.2E-09 2E-13 69.7 5.9 47 13-60 294-340 (509)
22 KOG0144|consensus 98.8 5E-09 1.1E-13 71.8 4.5 40 9-48 29-68 (510)
23 KOG4205|consensus 98.8 5.5E-09 1.2E-13 69.0 4.4 47 13-60 96-142 (311)
24 TIGR01648 hnRNP-R-Q heterogene 98.8 8.1E-09 1.7E-13 72.7 5.5 47 12-60 56-102 (578)
25 TIGR01628 PABP-1234 polyadenyl 98.8 7.5E-09 1.6E-13 71.3 5.1 44 16-60 2-45 (562)
26 TIGR01628 PABP-1234 polyadenyl 98.8 1.3E-08 2.9E-13 70.1 5.5 47 12-60 283-329 (562)
27 KOG0148|consensus 98.8 9.1E-09 2E-13 67.4 4.0 45 11-56 161-205 (321)
28 KOG0113|consensus 98.8 1.8E-08 3.9E-13 66.5 5.4 47 13-60 100-146 (335)
29 KOG0148|consensus 98.8 1.1E-08 2.3E-13 67.1 4.2 46 14-60 62-107 (321)
30 PF14259 RRM_6: RNA recognitio 98.8 2.3E-08 4.9E-13 51.8 4.7 33 17-49 1-33 (70)
31 TIGR01622 SF-CC1 splicing fact 98.8 1.7E-08 3.7E-13 67.7 5.1 46 14-60 186-231 (457)
32 smart00362 RRM_2 RNA recogniti 98.7 4.9E-08 1.1E-12 49.0 4.2 33 16-48 1-33 (72)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.6 1.4E-07 3.1E-12 64.5 5.5 37 13-49 274-311 (481)
34 KOG0144|consensus 98.5 2.7E-08 5.8E-13 68.3 1.1 42 13-54 123-164 (510)
35 smart00360 RRM RNA recognition 98.5 1.6E-07 3.4E-12 46.8 3.5 30 19-48 1-30 (71)
36 cd00590 RRM RRM (RNA recogniti 98.5 3.5E-07 7.5E-12 46.0 4.5 33 16-48 1-33 (74)
37 KOG0127|consensus 98.5 3E-07 6.5E-12 64.8 5.3 45 15-60 293-337 (678)
38 TIGR01642 U2AF_lg U2 snRNP aux 98.5 3.5E-07 7.5E-12 62.1 5.5 28 11-38 172-199 (509)
39 TIGR01648 hnRNP-R-Q heterogene 98.5 2.4E-07 5.3E-12 65.3 4.6 41 13-54 232-274 (578)
40 KOG0105|consensus 98.4 2.9E-07 6.3E-12 58.0 3.5 36 13-48 5-40 (241)
41 KOG0122|consensus 98.4 7E-07 1.5E-11 57.8 4.9 47 13-60 188-234 (270)
42 KOG0109|consensus 98.3 3E-07 6.5E-12 60.8 2.0 37 12-48 76-112 (346)
43 KOG0114|consensus 98.3 2.2E-06 4.8E-11 49.7 4.9 36 13-48 17-52 (124)
44 KOG0127|consensus 98.3 1.2E-06 2.6E-11 61.9 4.3 45 15-60 6-50 (678)
45 KOG0146|consensus 98.3 5.3E-07 1.1E-11 59.5 2.2 45 13-59 18-62 (371)
46 KOG0123|consensus 98.2 1.5E-06 3.2E-11 58.5 4.1 40 17-59 79-118 (369)
47 KOG0132|consensus 98.2 1.2E-06 2.7E-11 63.5 3.5 35 14-48 421-455 (894)
48 KOG0147|consensus 98.2 9.6E-07 2.1E-11 61.8 2.7 45 15-60 279-323 (549)
49 KOG4207|consensus 98.2 3.5E-06 7.5E-11 53.8 4.5 40 9-48 8-47 (256)
50 KOG0153|consensus 98.2 3.7E-06 7.9E-11 56.6 4.4 42 7-48 221-262 (377)
51 KOG0121|consensus 98.1 2.8E-06 6E-11 50.8 3.3 35 12-46 34-68 (153)
52 KOG0130|consensus 98.1 3.7E-06 8.1E-11 50.8 3.5 44 16-60 74-117 (170)
53 KOG0117|consensus 98.1 2E-06 4.3E-11 59.4 2.6 43 13-56 258-300 (506)
54 KOG0124|consensus 98.0 1E-05 2.2E-10 55.4 4.6 47 13-60 209-255 (544)
55 KOG0145|consensus 98.0 1E-05 2.2E-10 53.3 4.4 44 16-60 280-323 (360)
56 KOG0108|consensus 98.0 8.6E-06 1.9E-10 56.1 4.2 45 15-60 19-63 (435)
57 KOG0124|consensus 98.0 3.3E-06 7.2E-11 57.7 1.6 46 14-60 113-158 (544)
58 KOG0117|consensus 97.9 2.6E-05 5.6E-10 54.1 4.5 38 12-49 81-118 (506)
59 KOG0131|consensus 97.8 1.9E-05 4.2E-10 49.4 3.0 37 12-48 7-43 (203)
60 KOG0145|consensus 97.8 1.3E-05 2.8E-10 52.9 1.9 38 10-47 123-160 (360)
61 KOG0129|consensus 97.7 4.2E-05 9.2E-10 53.5 3.3 45 13-58 258-304 (520)
62 KOG0110|consensus 97.7 3.5E-05 7.6E-10 55.5 2.9 47 13-60 612-658 (725)
63 KOG4206|consensus 97.5 0.00023 5.1E-09 45.4 4.8 33 15-47 10-46 (221)
64 KOG0111|consensus 97.5 4.3E-05 9.4E-10 49.4 1.5 38 11-48 7-44 (298)
65 KOG0116|consensus 97.5 0.00015 3.2E-09 49.9 4.0 33 16-48 290-322 (419)
66 KOG0106|consensus 97.4 0.00014 3.1E-09 46.3 2.9 34 15-48 2-35 (216)
67 KOG0533|consensus 97.4 0.0003 6.5E-09 45.4 4.4 42 11-52 80-121 (243)
68 KOG0151|consensus 97.4 0.00027 5.8E-09 51.5 4.1 38 10-47 170-207 (877)
69 KOG0415|consensus 97.4 0.00025 5.4E-09 48.5 3.6 41 8-48 233-273 (479)
70 KOG0123|consensus 97.3 0.00033 7.1E-09 47.3 3.9 48 11-60 267-314 (369)
71 KOG4660|consensus 97.3 0.00025 5.5E-09 50.0 3.2 39 10-48 71-109 (549)
72 KOG0131|consensus 97.2 0.00027 5.8E-09 44.4 2.1 36 14-49 96-132 (203)
73 KOG4661|consensus 97.0 0.00072 1.6E-08 48.8 3.4 37 14-50 405-441 (940)
74 KOG0110|consensus 96.9 0.001 2.2E-08 48.2 3.2 36 13-48 514-549 (725)
75 KOG3152|consensus 96.9 0.0019 4.1E-08 42.3 4.0 36 13-48 73-108 (278)
76 PF08777 RRM_3: RNA binding mo 96.6 0.0018 3.9E-08 36.8 2.4 40 17-56 4-44 (105)
77 smart00361 RRM_1 RNA recogniti 96.6 0.0023 4.9E-08 33.3 2.6 33 28-60 2-40 (70)
78 PF13893 RRM_5: RNA recognitio 96.6 0.002 4.2E-08 31.9 2.2 18 31-48 1-18 (56)
79 KOG4210|consensus 96.5 0.0035 7.6E-08 41.1 3.3 43 17-60 188-230 (285)
80 KOG4454|consensus 96.4 0.0011 2.5E-08 42.8 0.7 37 12-48 7-43 (267)
81 KOG4208|consensus 96.4 0.0073 1.6E-07 38.4 4.1 47 13-60 48-95 (214)
82 KOG1190|consensus 96.3 0.0059 1.3E-07 42.4 3.8 36 13-48 27-62 (492)
83 KOG4209|consensus 96.1 0.0042 9E-08 39.8 2.0 49 10-59 97-145 (231)
84 KOG1548|consensus 96.0 0.0094 2E-07 40.6 3.3 29 13-41 133-161 (382)
85 KOG0146|consensus 95.6 0.025 5.5E-07 37.8 4.0 38 10-47 281-318 (371)
86 KOG1457|consensus 95.5 0.013 2.8E-07 38.2 2.4 33 13-45 209-241 (284)
87 KOG0115|consensus 95.4 0.015 3.2E-07 38.2 2.6 36 15-50 32-67 (275)
88 PF14605 Nup35_RRM_2: Nup53/35 95.4 0.026 5.7E-07 28.3 3.0 31 16-47 3-33 (53)
89 KOG0129|consensus 95.4 0.043 9.2E-07 38.9 4.9 38 12-49 368-406 (520)
90 KOG4212|consensus 95.1 0.022 4.8E-07 40.2 2.7 37 11-47 533-569 (608)
91 KOG4212|consensus 94.8 0.056 1.2E-06 38.2 4.1 48 10-59 211-258 (608)
92 KOG0120|consensus 94.7 0.037 8.1E-07 39.1 3.0 48 12-60 287-334 (500)
93 KOG0112|consensus 94.2 0.019 4.1E-07 43.0 0.9 40 9-48 367-406 (975)
94 KOG0226|consensus 93.9 0.087 1.9E-06 34.8 3.3 48 12-60 188-235 (290)
95 KOG1855|consensus 93.8 0.13 2.8E-06 36.0 4.2 37 12-48 229-265 (484)
96 COG5175 MOT2 Transcriptional r 92.8 0.11 2.3E-06 35.8 2.6 34 15-48 115-154 (480)
97 PF08675 RNA_bind: RNA binding 92.7 0.31 6.7E-06 27.2 3.9 31 12-42 6-36 (87)
98 KOG1457|consensus 92.3 0.2 4.3E-06 32.8 3.2 27 12-38 32-58 (284)
99 KOG4211|consensus 91.9 0.27 5.8E-06 34.9 3.7 33 15-48 11-43 (510)
100 PF15513 DUF4651: Domain of un 90.9 0.35 7.6E-06 25.4 2.7 18 29-46 9-26 (62)
101 KOG1190|consensus 90.2 0.54 1.2E-05 33.0 3.8 30 13-42 413-442 (492)
102 KOG0147|consensus 89.8 0.073 1.6E-06 38.0 -0.6 36 13-48 178-213 (549)
103 KOG2891|consensus 88.8 0.52 1.1E-05 31.9 2.9 39 10-48 145-195 (445)
104 KOG4206|consensus 85.6 1.9 4.1E-05 27.8 4.0 36 13-48 145-180 (221)
105 KOG4849|consensus 85.0 0.53 1.1E-05 32.7 1.3 25 17-41 83-107 (498)
106 KOG0106|consensus 84.7 0.56 1.2E-05 30.0 1.3 35 13-47 98-132 (216)
107 KOG4676|consensus 83.4 0.92 2E-05 31.8 2.0 34 15-48 8-41 (479)
108 KOG0128|consensus 81.7 0.94 2E-05 34.1 1.6 35 14-48 736-770 (881)
109 PF03467 Smg4_UPF3: Smg-4/UPF3 81.3 0.41 8.9E-06 29.4 -0.3 30 12-41 5-35 (176)
110 PF04059 RRM_2: RNA recognitio 80.1 6.7 0.00014 22.0 4.4 45 15-60 2-48 (97)
111 KOG1995|consensus 78.6 2.9 6.4E-05 28.6 3.1 32 11-42 63-94 (351)
112 KOG4211|consensus 77.6 2.4 5.2E-05 30.3 2.5 29 15-43 104-132 (510)
113 KOG1456|consensus 77.0 8.2 0.00018 27.2 4.9 36 13-48 30-65 (494)
114 KOG0112|consensus 76.8 3.1 6.8E-05 31.8 3.0 37 12-48 453-489 (975)
115 PF11608 Limkain-b1: Limkain b 74.4 4.5 9.8E-05 22.7 2.6 30 15-44 3-37 (90)
116 KOG4210|consensus 74.1 1.4 2.9E-05 29.1 0.6 46 13-59 87-132 (285)
117 KOG0105|consensus 73.9 10 0.00022 24.4 4.4 40 13-52 114-153 (241)
118 PF10309 DUF2414: Protein of u 73.8 7.2 0.00016 20.3 3.2 25 13-38 4-28 (62)
119 KOG2193|consensus 73.5 2.6 5.7E-05 30.0 1.9 24 15-38 2-25 (584)
120 KOG2135|consensus 73.4 1.8 3.8E-05 30.9 1.0 21 27-47 386-406 (526)
121 PF07292 NID: Nmi/IFP 35 domai 72.4 2.4 5.2E-05 23.5 1.2 24 12-35 50-73 (88)
122 PF11411 DNA_ligase_IV: DNA li 70.6 4.1 8.8E-05 19.2 1.6 17 24-40 19-35 (36)
123 COG0030 KsgA Dimethyladenosine 70.5 6.1 0.00013 25.9 3.0 33 15-47 96-128 (259)
124 KOG4008|consensus 68.7 5.6 0.00012 26.2 2.5 33 12-44 38-70 (261)
125 PF10567 Nab6_mRNP_bdg: RNA-re 65.8 4.7 0.0001 27.2 1.7 36 13-48 14-49 (309)
126 PF05172 Nup35_RRM: Nup53/35/4 65.2 10 0.00022 21.4 2.8 28 16-44 8-35 (100)
127 KOG0128|consensus 63.7 0.23 5E-06 37.2 -5.0 34 14-47 667-700 (881)
128 COG0724 RNA-binding proteins ( 63.0 14 0.0003 21.8 3.3 37 12-48 223-259 (306)
129 PF14112 DUF4284: Domain of un 59.9 12 0.00025 21.6 2.5 19 16-37 3-21 (122)
130 COG5584 Predicted small secret 59.6 10 0.00022 21.7 2.2 27 22-48 30-56 (103)
131 PF00398 RrnaAD: Ribosomal RNA 58.7 11 0.00023 24.1 2.4 33 14-46 97-131 (262)
132 KOG3432|consensus 58.3 19 0.00041 21.1 3.2 33 13-47 34-66 (121)
133 PRK00523 hypothetical protein; 56.3 11 0.00025 20.3 1.9 17 24-40 38-54 (72)
134 KOG2253|consensus 54.9 9.1 0.0002 28.3 1.8 43 12-56 38-80 (668)
135 PF03672 UPF0154: Uncharacteri 54.9 12 0.00027 19.6 1.9 17 24-40 30-46 (64)
136 PRK01844 hypothetical protein; 54.1 13 0.00028 20.0 1.9 17 24-40 37-53 (72)
137 KOG2068|consensus 51.7 5.5 0.00012 27.1 0.3 34 15-48 78-114 (327)
138 KOG1456|consensus 51.7 42 0.00091 23.8 4.5 41 13-53 286-327 (494)
139 PF14893 PNMA: PNMA 51.6 15 0.00033 24.9 2.3 22 15-36 19-40 (331)
140 COG4009 Uncharacterized protei 50.2 23 0.00049 19.6 2.5 25 16-40 50-74 (88)
141 KOG4676|consensus 48.2 3.5 7.6E-05 29.0 -1.1 32 15-46 152-183 (479)
142 cd06257 DnaJ DnaJ domain or J- 47.8 19 0.00041 16.9 1.8 19 20-38 6-24 (55)
143 cd00027 BRCT Breast Cancer Sup 47.5 31 0.00067 16.1 3.2 25 16-40 3-27 (72)
144 PF00226 DnaJ: DnaJ domain; I 46.8 22 0.00048 17.4 2.0 19 20-38 6-24 (64)
145 smart00271 DnaJ DnaJ molecular 46.0 21 0.00046 17.1 1.9 20 19-38 6-25 (60)
146 PTZ00338 dimethyladenosine tra 44.0 24 0.00052 23.2 2.4 32 16-47 103-134 (294)
147 PRK00274 ksgA 16S ribosomal RN 44.0 29 0.00062 22.3 2.7 22 16-37 107-128 (272)
148 TIGR00755 ksgA dimethyladenosi 43.1 46 0.001 20.9 3.5 27 16-42 96-122 (253)
149 PF15407 Spo7_2_N: Sporulation 42.5 8.5 0.00019 20.3 0.1 18 13-30 26-43 (67)
150 cd04870 ACT_PSP_1 CT domains f 42.0 23 0.0005 18.1 1.7 30 17-46 42-71 (75)
151 PF10281 Ish1: Putative stress 41.4 29 0.00062 15.8 1.8 17 25-41 3-19 (38)
152 COG3763 Uncharacterized protei 40.6 30 0.00065 18.6 2.0 17 24-40 37-53 (71)
153 KOG4410|consensus 40.5 55 0.0012 22.5 3.6 27 15-41 331-357 (396)
154 PF05724 TPMT: Thiopurine S-me 40.4 30 0.00066 21.7 2.3 26 21-46 165-190 (218)
155 smart00650 rADc Ribosomal RNA 36.6 72 0.0016 18.6 3.5 24 16-39 79-102 (169)
156 PHA02114 hypothetical protein 36.2 50 0.0011 19.2 2.6 10 33-42 77-86 (127)
157 KOG1365|consensus 36.0 40 0.00087 24.0 2.5 27 16-42 163-189 (508)
158 PRK13256 thiopurine S-methyltr 35.7 47 0.001 21.2 2.7 27 20-46 171-197 (226)
159 COG3194 DAL3 Ureidoglycolate h 34.7 18 0.0004 22.4 0.6 13 32-44 11-23 (168)
160 PF01984 dsDNA_bind: Double-st 34.2 28 0.00062 19.8 1.4 21 20-40 75-95 (107)
161 PHA01632 hypothetical protein 33.6 51 0.0011 17.1 2.1 21 17-37 19-39 (64)
162 PRK04239 hypothetical protein; 32.6 45 0.00098 19.3 2.0 20 20-39 80-99 (110)
163 CHL00030 rpl23 ribosomal prote 32.3 95 0.0021 17.2 4.4 32 16-47 20-53 (93)
164 PF09892 DUF2119: Uncharacteri 32.1 49 0.0011 21.0 2.2 21 14-34 7-30 (193)
165 KOG0738|consensus 30.8 37 0.00079 24.3 1.7 24 14-38 350-376 (491)
166 COG0347 GlnK Nitrogen regulato 30.4 58 0.0012 18.9 2.2 30 28-59 13-42 (112)
167 TIGR00006 S-adenosyl-methyltra 30.3 36 0.00077 22.8 1.5 20 24-43 139-158 (305)
168 PF15063 TC1: Thyroid cancer p 30.1 35 0.00077 18.6 1.2 29 13-41 24-52 (79)
169 smart00457 MACPF membrane-atta 29.9 46 0.001 20.2 1.9 21 20-40 31-51 (194)
170 PHA01782 hypothetical protein 29.4 43 0.00093 20.9 1.6 22 21-42 62-83 (177)
171 PF09673 TrbC_Ftype: Type-F co 29.3 80 0.0017 17.8 2.7 26 23-48 5-30 (113)
172 PRK00050 16S rRNA m(4)C1402 me 28.8 39 0.00085 22.5 1.5 20 24-43 137-156 (296)
173 cd06397 PB1_UP1 Uncharacterize 28.7 60 0.0013 17.9 2.0 19 26-44 55-73 (82)
174 PF15023 DUF4523: Protein of u 28.3 53 0.0011 20.3 1.9 33 13-45 85-121 (166)
175 COG4073 Uncharacterized protei 27.8 52 0.0011 20.8 1.8 23 10-32 11-36 (198)
176 PF14396 CFTR_R: Cystic fibros 27.8 20 0.00043 22.9 0.0 16 21-36 183-198 (214)
177 smart00703 NRF N-terminal doma 27.6 44 0.00095 18.6 1.4 25 16-40 71-96 (110)
178 KOG2318|consensus 27.6 1.2E+02 0.0027 22.6 3.9 42 11-52 171-217 (650)
179 smart00195 DSPc Dual specifici 27.2 45 0.00098 18.6 1.4 26 15-42 6-31 (138)
180 PF05391 Lsm_interact: Lsm int 26.9 62 0.0013 13.4 1.7 11 25-35 9-19 (21)
181 PF00054 Laminin_G_1: Laminin 26.8 43 0.00093 18.9 1.3 9 15-23 93-101 (131)
182 PF04115 Ureidogly_hydro: Urei 26.7 33 0.00072 20.7 0.8 13 32-44 11-23 (165)
183 KOG4285|consensus 26.4 49 0.0011 22.7 1.6 23 21-44 204-226 (350)
184 TIGR01639 P_fal_TIGR01639 Plas 26.2 32 0.00068 17.5 0.6 21 22-42 6-26 (61)
185 KOG0718|consensus 26.2 38 0.00082 24.6 1.1 23 19-41 14-36 (546)
186 PRK13255 thiopurine S-methyltr 25.9 1.1E+02 0.0024 19.1 3.1 25 20-44 164-188 (218)
187 PF07979 Intimin_C: Intimin C- 25.7 38 0.00083 19.3 0.9 20 20-41 27-46 (101)
188 PF13145 Rotamase_2: PPIC-type 25.4 48 0.001 17.5 1.3 13 26-38 1-13 (121)
189 PF08952 DUF1866: Domain of un 24.9 1.1E+02 0.0025 18.5 2.9 17 30-46 52-68 (146)
190 PF12385 Peptidase_C70: Papain 24.7 71 0.0015 19.8 2.0 18 25-42 95-112 (166)
191 PF06753 Bradykinin: Bradykini 24.5 40 0.00086 13.4 0.6 9 50-58 5-13 (19)
192 PF01823 MACPF: MAC/Perforin d 24.3 35 0.00075 20.4 0.6 23 19-41 53-78 (212)
193 PTZ00100 DnaJ chaperone protei 24.0 67 0.0014 18.7 1.7 19 19-37 70-88 (116)
194 PRK11558 putative ssRNA endonu 23.9 64 0.0014 18.2 1.6 31 15-45 28-60 (97)
195 TIGR02542 B_forsyth_147 Bacter 23.7 1E+02 0.0022 18.4 2.5 26 21-48 10-35 (145)
196 KOG1271|consensus 23.4 1.4E+02 0.003 19.3 3.2 32 23-54 181-212 (227)
197 PF05193 Peptidase_M16_C: Pept 23.0 30 0.00066 19.3 0.2 26 14-39 20-45 (184)
198 PF14337 DUF4393: Domain of un 22.9 62 0.0014 19.4 1.5 18 21-38 25-42 (186)
199 PF00837 T4_deiodinase: Iodoth 22.8 1.2E+02 0.0025 19.9 2.8 24 15-38 212-236 (237)
200 KOG4307|consensus 22.7 1.4E+02 0.0031 23.0 3.5 30 14-43 867-896 (944)
201 PRK14595 peptide deformylase; 22.5 89 0.0019 19.0 2.1 24 14-37 138-161 (162)
202 COG2118 DNA-binding protein [G 22.4 87 0.0019 18.3 2.0 20 19-38 82-101 (116)
203 smart00540 LEM in nuclear memb 22.2 78 0.0017 15.3 1.5 16 25-40 5-20 (44)
204 PF10982 DUF2789: Protein of u 22.1 37 0.0008 18.3 0.4 15 26-40 3-17 (74)
205 PF09702 Cas_Csa5: CRISPR-asso 21.9 1.3E+02 0.0029 17.3 2.6 19 14-35 64-82 (105)
206 KOG0739|consensus 21.8 71 0.0015 22.3 1.8 23 13-35 306-328 (439)
207 PRK03606 ureidoglycolate hydro 21.4 47 0.001 20.3 0.8 13 32-44 11-23 (162)
208 PF12623 Hen1_L: RNA repair, l 21.3 2.3E+02 0.005 18.7 3.9 32 16-47 120-151 (245)
209 TIGR01873 cas_CT1978 CRISPR-as 20.9 81 0.0018 17.4 1.6 38 15-53 26-67 (87)
210 COG0484 DnaJ DnaJ-class molecu 20.8 85 0.0018 21.8 2.0 20 19-38 9-28 (371)
211 COG0615 TagD Cytidylyltransfer 20.5 2.1E+02 0.0045 17.2 4.5 36 16-54 88-123 (140)
212 PRK14896 ksgA 16S ribosomal RN 20.5 1.4E+02 0.003 19.0 2.8 23 16-39 93-115 (258)
213 COG0130 TruB Pseudouridine syn 20.4 1.5E+02 0.0032 19.6 3.0 31 14-44 75-109 (271)
214 PF03545 YopE: Yersinia virule 20.2 48 0.001 17.7 0.6 7 35-41 53-59 (70)
215 PRK13395 ureidoglycolate hydro 20.1 54 0.0012 20.2 0.9 12 33-44 12-23 (171)
216 PRK14288 chaperone protein Dna 20.1 83 0.0018 21.3 1.8 20 19-38 8-27 (369)
No 1
>KOG0149|consensus
Probab=99.55 E-value=5.8e-15 Score=94.01 Aligned_cols=50 Identities=36% Similarity=0.473 Sum_probs=45.1
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+....|+|||||+|+++.|+||++|+|||+|.++.|+. +.-..++||||
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvit-d~~t~rskGyG 57 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVIT-DKNTGRSKGYG 57 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEe-ccCCcccccee
Confidence 345678999999999999999999999999999998887 77888899987
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.23 E-value=2.6e-11 Score=72.21 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=38.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||++++|++|+++|++||+|.++.+.+ +.-..++||||
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~-d~~tg~~kGfa 79 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV-DRETGRSRGFG 79 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEe-cCCCCCcceEE
Confidence 456899999999999999999999999999999887 33334456664
No 3
>KOG0125|consensus
Probab=99.23 E-value=1.3e-11 Score=81.94 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=43.9
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....+||+|.|||+...|.||+.+|++||.|.+|+|+-+..| +||||
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG---SKGFG 139 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG---SKGFG 139 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC---CCccc
Confidence 3345678999999999999999999999999999999998888 99998
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.16 E-value=1.1e-10 Score=75.72 Aligned_cols=45 Identities=29% Similarity=0.294 Sum_probs=38.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..|||+|||+++++++|+++|++||.|.+|.|.+ +.-...+||||
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~-d~~t~~skG~a 314 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIR-DLTTNQCKGYG 314 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeE-cCCCCCccceE
Confidence 3699999999999999999999999999999988 33344567765
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.16 E-value=7.6e-11 Score=60.49 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=31.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
|||+|||+++++++|+++|++||.|..+.+..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN 33 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc
Confidence 799999999999999999999999998888874
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.15 E-value=9e-11 Score=76.14 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=38.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+|||+|||++++|++|+++|++||+|.+|.++++. -..++||||
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~-~~g~s~g~a 48 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK-VTGQSLGYG 48 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC-CCCccceEE
Confidence 5789999999999999999999999999999998742 123455664
No 7
>KOG4205|consensus
Probab=99.14 E-value=7e-11 Score=77.93 Aligned_cols=47 Identities=38% Similarity=0.583 Sum_probs=42.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+.++||||+|+|++++|.|++||++||+|.++.|++ +.-..+++|||
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~-d~~t~rsrgFg 51 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMR-DPSTGRSRGFG 51 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEec-cCCCCCccccc
Confidence 678999999999999999999999999999999998 55567888876
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.07 E-value=4.7e-10 Score=74.65 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=40.1
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....++|||++||+++++++|+++|++||+|.+|.|+++. -..++||||
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~-~tg~srGya 152 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY-KTGYSFGYA 152 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCccCcEE
Confidence 34456789999999999999999999999999999998732 233455554
No 9
>PLN03213 repressor of silencing 3; Provisional
Probab=99.03 E-value=3.5e-10 Score=78.92 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=38.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..-+||||||++.++++||+..|++||.|.+|.|++ ..| ||||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG----RGFA 51 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG----RSFA 51 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC----CceE
Confidence 456899999999999999999999999999999997 455 7775
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.96 E-value=1.2e-09 Score=70.74 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
.++|||||||+.+++++|+++|+.||+|.+|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d 39 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE 39 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 578999999999999999999999999999999874
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.95 E-value=1.4e-09 Score=76.82 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=40.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||||||+++++++|+++|++||+|.+|.+++ +....++||||
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~-D~~TgkskGfA 152 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW-DPATGKHKGFA 152 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEee-cCCCCCcCCeE
Confidence 467899999999999999999999999999999987 43445677775
No 12
>KOG0126|consensus
Probab=98.92 E-value=1.5e-10 Score=72.25 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
-=+||||||++.||-||--.|+|||+|.+|.+++ +.++..+|||+
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiR-Dk~TGKSKGFa 80 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIR-DKKTGKSKGFA 80 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEe-cCCCCcccceE
Confidence 3499999999999999999999999999999999 88888999985
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.90 E-value=3e-09 Score=70.85 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
....+|||+|||+++++++|+++|++||+|.++.|.++
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d 228 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD 228 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec
Confidence 34568999999999999999999999999999988873
No 14
>KOG0107|consensus
Probab=98.90 E-value=2.1e-09 Score=66.60 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=40.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISP 55 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~ 55 (60)
..+|||||||+..+++.||+..|..||+|.+|+|.++++||.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAF 51 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAF 51 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceE
Confidence 4689999999999999999999999999999999999988874
No 15
>KOG0109|consensus
Probab=98.89 E-value=1.1e-09 Score=72.18 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=31.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
-||||||||..+++.+||.+|++||+|.+++|++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK 36 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK 36 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec
Confidence 4899999999999999999999999997777766
No 16
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.86 E-value=6.1e-09 Score=66.87 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=34.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
....+||+||++.+|+++|+++|++||+|.+|+|.++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D 40 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS 40 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 3467999999999999999999999999999999884
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.86 E-value=4.7e-09 Score=74.25 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=39.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|||+|||+++++++|+++|++||+|.++.+.++. ...+.||||
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~-~tgksKGfG 249 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP-TGRGHKGYG 249 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCcCCeE
Confidence 35789999999999999999999999999999998843 234567765
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.86 E-value=3.5e-09 Score=72.36 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=33.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
++.|||+|||++++|++|+++|++||+|.++.+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~ 36 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP 36 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC
Confidence 46799999999999999999999999999998887
No 19
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.84 E-value=7.4e-09 Score=62.34 Aligned_cols=46 Identities=30% Similarity=0.486 Sum_probs=38.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+|||||||+++++++|+++|.+||.|..+.+..+ .-...++|||
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d-~~~~~~~g~~ 160 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRD-RETGKSRGFA 160 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeec-cccCccCceE
Confidence 588999999999999999999999999988888873 2344555654
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.84 E-value=8.4e-09 Score=69.19 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=38.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+.+++++|+++|++||.|.+|.++++ .....+||||
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d-~~~~~skg~a 134 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD-RNSRRSKGVA 134 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEE
Confidence 4567999999999999999999999999999999873 2334456664
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.83 E-value=9.2e-09 Score=69.69 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=38.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|||||||+.+++++|+++|++||.|..+.+.++. ....++|||
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~a 340 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI-ATGLSKGYA 340 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCCCcCeEE
Confidence 45789999999999999999999999999999887732 233456664
No 22
>KOG0144|consensus
Probab=98.83 E-value=5e-09 Score=71.84 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=36.3
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.++...-|||||.||..++|.|||++|++||.|.+|.+.+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~k 68 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIK 68 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeec
Confidence 3445677999999999999999999999999999999998
No 23
>KOG4205|consensus
Probab=98.82 E-value=5.5e-09 Score=69.02 Aligned_cols=47 Identities=53% Similarity=0.676 Sum_probs=41.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+++|||+||.++++++++++|+|||.|.++.++. ++...+.+|||
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~-d~~~~~~rgFg 142 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMY-DKTTSRPRGFG 142 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEee-cccccccccce
Confidence 356899999999999999999999999999988887 77777788876
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.82 E-value=8.1e-09 Score=72.67 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=39.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||++++|++|+++|++||.|.++.++++..| .+||||
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG--~sRGfa 102 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSG--QNRGYA 102 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCC--CccceE
Confidence 34578999999999999999999999999999999886333 566765
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.82 E-value=7.5e-09 Score=71.33 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=36.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.|||||||+++||++|+++|++||+|.+|.|.++ ....+++|||
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d-~~t~~s~G~a 45 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRD-SVTRRSLGYG 45 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEE
Confidence 5899999999999999999999999999999873 3333455654
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.78 E-value=1.3e-08 Score=70.13 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=39.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....+|||+||++.+++++|+++|++||+|.++.++++..| .+||||
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g--~~~g~g 329 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKG--VSRGFG 329 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCC--CcCCeE
Confidence 34567999999999999999999999999999999886433 345554
No 27
>KOG0148|consensus
Probab=98.77 E-value=9.1e-09 Score=67.36 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=39.1
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCc
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPV 56 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~ 56 (60)
.+..+.+||||++..++|++||+.|++||.|.+|+|-+ +.||++.
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFV 205 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFV 205 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEE
Confidence 35577899999999999999999999999999999999 5666543
No 28
>KOG0113|consensus
Probab=98.77 E-value=1.8e-08 Score=66.53 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=39.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+.|||+.|+++++|.+|++.|+.||+|..+.++++ .=..++||||
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d-~vTgkskGYA 146 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD-KVTGKSKGYA 146 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee-cccCCccceE
Confidence 4578999999999999999999999999999999984 2333567765
No 29
>KOG0148|consensus
Probab=98.76 E-value=1.1e-08 Score=67.07 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.-.+|||-|+.+++.++||+.|.+||+|.++.|+| +..+.++||||
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvir-D~~T~KsKGYg 107 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIR-DMNTGKSKGYG 107 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEee-cccCCccccee
Confidence 44699999999999999999999999999999999 77888899987
No 30
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.76 E-value=2.3e-08 Score=51.82 Aligned_cols=33 Identities=33% Similarity=0.640 Sum_probs=29.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
|||+|||+.+++++|+++|++||.|..+.+...
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~ 33 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN 33 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee
Confidence 799999999999999999999999999988873
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.75 E-value=1.7e-08 Score=67.71 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=37.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+|||+|||+.+++++|+++|++||.|..|.+.++. ....+||||
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~-~~g~~~g~a 231 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP-ETGRSKGFG 231 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCccceEE
Confidence 5789999999999999999999999999999888733 223455554
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=98.67 E-value=4.9e-08 Score=48.96 Aligned_cols=33 Identities=36% Similarity=0.678 Sum_probs=30.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
++||+|||+.+++++|+++|++||.|..+.+..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~ 33 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPK 33 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEec
Confidence 489999999999999999999999999888776
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.57 E-value=1.4e-07 Score=64.55 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=33.6
Q ss_pred CcceEEEeCCCC-CCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 13 RTKKIFVGGLSA-PTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 13 ~~~klfVg~L~~-~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
....|||+||++ .+++++|+++|++||.|.+|.++++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 456899999998 6999999999999999999998873
No 34
>KOG0144|consensus
Probab=98.53 E-value=2.7e-08 Score=68.35 Aligned_cols=42 Identities=33% Similarity=0.421 Sum_probs=38.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGIS 54 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~ 54 (60)
..+|||||.|+..++|.++++.|++||.|+++.|.++..|.+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s 164 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS 164 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc
Confidence 467999999999999999999999999999999999776654
No 35
>smart00360 RRM RNA recognition motif.
Probab=98.52 E-value=1.6e-07 Score=46.83 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=27.8
Q ss_pred EeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 19 VGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
|+|||+.+++++|+++|++||.|..+.+..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~ 30 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVR 30 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEe
Confidence 579999999999999999999999988776
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.49 E-value=3.5e-07 Score=45.98 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=30.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+++|+|||+.+++++|+++|+++|.|..+.+..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~ 33 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVR 33 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEee
Confidence 479999999999999999999999999888876
No 37
>KOG0127|consensus
Probab=98.49 E-value=3e-07 Score=64.81 Aligned_cols=45 Identities=31% Similarity=0.385 Sum_probs=37.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+||.|||++++|++|.++|++||+|..+.++. ..-+.+++|.|
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~-~k~T~~skGtA 337 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVK-DKDTGHSKGTA 337 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEe-ccCCCCcccce
Confidence 5799999999999999999999999999987776 44555566543
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.48 E-value=3.5e-07 Score=62.06 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=24.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~f 38 (60)
....++|||||||+.+++++|+++|+++
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~ 199 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDL 199 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999985
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.47 E-value=2.4e-07 Score=65.33 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=35.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC--CceeEEEEeeeecCCC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQF--GPVYYTACDRFIFGIS 54 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~f--G~V~~v~i~~~~~g~~ 54 (60)
..++|||+||++++++++|+++|++| |+|.+|.+.+ .++|.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-gfAFV 274 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-DYAFV 274 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-CeEEE
Confidence 35679999999999999999999999 9999887766 35544
No 40
>KOG0105|consensus
Probab=98.42 E-value=2.9e-07 Score=58.00 Aligned_cols=36 Identities=17% Similarity=0.479 Sum_probs=33.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..+++||||||.++.|.|++++|.+||.|.+|++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~ 40 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN 40 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEecc
Confidence 468899999999999999999999999999887764
No 41
>KOG0122|consensus
Probab=98.39 E-value=7e-07 Score=57.78 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=41.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....+=|.|||.+++|+||+++|-+||.|..|.+.+ +.-++.+||||
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylar-dK~TG~~kGFA 234 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLAR-DKETGLSKGFA 234 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEE-ccccCcccceE
Confidence 345588999999999999999999999999999998 66677788875
No 42
>KOG0109|consensus
Probab=98.32 E-value=3e-07 Score=60.84 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=32.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....||+||||++.+++++||..|++||+|.+++|.+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk 112 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK 112 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec
Confidence 3467899999999999999999999999997766665
No 43
>KOG0114|consensus
Probab=98.29 E-value=2.2e-06 Score=49.72 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
-.+-|||.|||+++|.|+.-++|.+||.|..+.|.-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~ 52 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN 52 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC
Confidence 345599999999999999999999999999887764
No 44
>KOG0127|consensus
Probab=98.27 E-value=1.2e-06 Score=61.86 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..|||++||++++.++|.++|+.+|+|..+.+++ ..|++..||||
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt-~~gs~~~RGfg 50 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVT-NKGSSEKRGFG 50 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEec-CCCcccccCcc
Confidence 6799999999999999999999999999999998 88999999997
No 45
>KOG0146|consensus
Probab=98.26 E-value=5.3e-07 Score=59.46 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=38.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCcccc
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~f 59 (60)
+.+|||||-|...-.|||+|++|..||.|+++.|.+-..| .+||+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg--~sKGC 62 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDG--NSKGC 62 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCC--CCCCc
Confidence 5689999999999999999999999999999999984444 34554
No 46
>KOG0123|consensus
Probab=98.24 E-value=1.5e-06 Score=58.53 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=37.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCcccc
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~f 59 (60)
+||-||+++++.++|.+.|+.||+|.++.++++..| +|||
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g---~kg~ 118 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG---SKGY 118 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC---ceee
Confidence 999999999999999999999999999999998888 6664
No 47
>KOG0132|consensus
Probab=98.22 E-value=1.2e-06 Score=63.47 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=32.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
++.||||+|+..++|.||+++|+.||+|.+|.+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~ 455 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP 455 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc
Confidence 45799999999999999999999999999997665
No 48
>KOG0147|consensus
Probab=98.21 E-value=9.6e-07 Score=61.80 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=37.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+||||||+.++++++|+..|++||.|..|.+.++. -...+||||
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~-~tG~skgfG 323 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS-ETGRSKGFG 323 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeecccc-ccccccCcc
Confidence 349999999999999999999999999999998854 223567775
No 49
>KOG4207|consensus
Probab=98.17 E-value=3.5e-06 Score=53.83 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=35.7
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..-.....|-|-||.+.++.++|+..|++||.|.+|.|.+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPr 47 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPR 47 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceeccc
Confidence 3345567899999999999999999999999999999987
No 50
>KOG0153|consensus
Probab=98.15 E-value=3.7e-06 Score=56.60 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=36.5
Q ss_pred cccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 7 ISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 7 ~~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..+...+.||||+|-..++|.||+++|.|||+|.++.|..
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~ 262 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP 262 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec
Confidence 345566778899999988999999999999999999987765
No 51
>KOG0121|consensus
Probab=98.14 E-value=2.8e-06 Score=50.85 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEE
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i 46 (60)
.+++.+|||||+.-++||.|-++|+..|+|..|.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiM 68 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIM 68 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEe
Confidence 35778999999999999999999999999976643
No 52
>KOG0130|consensus
Probab=98.11 E-value=3.7e-06 Score=50.79 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=36.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
-|||.++.+.++|+++.+.|..||+|.++++.- +.-....|||+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNL-DRRtGy~KGYa 117 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNL-DRRTGYVKGYA 117 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeecc-cccccccccee
Confidence 399999999999999999999999999987654 33444466664
No 53
>KOG0117|consensus
Probab=98.11 E-value=2e-06 Score=59.42 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=36.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCc
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPV 56 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~ 56 (60)
+.+-|||.||+..+|||.|+++|++||.|..|...+ +.+|.++
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r-DYaFVHf 300 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR-DYAFVHF 300 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeeccc-ceeEEee
Confidence 456799999999999999999999999999988777 4666543
No 54
>KOG0124|consensus
Probab=98.02 E-value=1e-05 Score=55.39 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=38.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++||..++++.+|+||+..|+.||+|..+.+.+...| ..-||||
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~-~~HkGyG 255 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG-RGHKGYG 255 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC-CCcccee
Confidence 4578999999999999999999999999999888873322 3456665
No 55
>KOG0145|consensus
Probab=98.01 E-value=1e-05 Score=53.35 Aligned_cols=44 Identities=32% Similarity=0.354 Sum_probs=40.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
-+||=||++++.|.-|=++|.+||.|.+|.|.+ ++-.-..||||
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvir-D~ttnkCKGfg 323 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIR-DFTTNKCKGFG 323 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEe-cCCccccccee
Confidence 499999999999999999999999999999999 66667788886
No 56
>KOG0108|consensus
Probab=98.01 E-value=8.6e-06 Score=56.07 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=38.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+||||+|+++++++|.++|+..|.|.++.++- ++=...+||||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~-D~~tG~~~G~~ 63 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY-DRETGKPKGFG 63 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecc-cccCCCcCcee
Confidence 7899999999999999999999999999988776 44445567765
No 57
>KOG0124|consensus
Probab=97.97 E-value=3.3e-06 Score=57.70 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=37.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+++|||.|++++.|+.||..|.+||+|.++.+.- +.-+.+-|||+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSW-Dp~T~kHKgFA 158 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW-DPATGKHKGFA 158 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccc-ccccccccceE
Confidence 57999999999999999999999999999997664 33444466664
No 58
>KOG0117|consensus
Probab=97.87 E-value=2.6e-05 Score=54.06 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=35.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
+.-+-+|||.||.++.|++|.-+|+.-|+|.++++|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD 118 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD 118 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeec
Confidence 45567999999999999999999999999999999985
No 59
>KOG0131|consensus
Probab=97.82 E-value=1.9e-05 Score=49.40 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=34.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..+||||||+..++++-|-++|-|.|+|.++.+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPk 43 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPK 43 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecch
Confidence 4567899999999999999999999999999998886
No 60
>KOG0145|consensus
Probab=97.78 E-value=1.3e-05 Score=52.88 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=31.7
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
..-+..+|||.+||...|..+|+++|++||.|..-+|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL 160 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRIL 160 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhh
Confidence 33455689999999999999999999999998655444
No 61
>KOG0129|consensus
Probab=97.68 E-value=4.2e-05 Score=53.48 Aligned_cols=45 Identities=33% Similarity=0.462 Sum_probs=35.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe--eeecCCCCccc
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD--RFIFGISPVKN 58 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~--~~~~g~~~~k~ 58 (60)
-.+|+|||+|||+++|+.|..-|.+||.+. |+.. ....+..+.||
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkG 304 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKG 304 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCC
Confidence 357899999999999999999999999985 5444 33345555555
No 62
>KOG0110|consensus
Probab=97.68 E-value=3.5e-05 Score=55.50 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=40.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|+|.|||+.++-.+++++|..||.|.+|.+.+. .|..-.+|||
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~ 658 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFG 658 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccce
Confidence 3679999999999999999999999999999999984 5555556654
No 63
>KOG4206|consensus
Probab=97.52 E-value=0.00023 Score=45.40 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=29.6
Q ss_pred ceEEEeCCCCCCCHHHHHH----HHhcCCceeEEEEe
Q psy7530 15 KKIFVGGLSAPTTLEDVKN----YFEQFGPVYYTACD 47 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~----~F~~fG~V~~v~i~ 47 (60)
.+|||.||...+..++|++ +|+|||+|.+|.+-
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~ 46 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF 46 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec
Confidence 3999999999999999999 99999999777544
No 64
>KOG0111|consensus
Probab=97.52 E-value=4.3e-05 Score=49.41 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=33.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..+.+.||||+|..+++|.-|...|-+||.|.+|.+.-
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPl 44 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPL 44 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhccccc
Confidence 34567799999999999999999999999999998774
No 65
>KOG0116|consensus
Probab=97.51 E-value=0.00015 Score=49.91 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=30.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.|||+|||.+++.++|++.|.+||+|....|..
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v 322 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV 322 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEE
Confidence 499999999999999999999999999887765
No 66
>KOG0106|consensus
Probab=97.42 E-value=0.00014 Score=46.26 Aligned_cols=34 Identities=18% Similarity=0.478 Sum_probs=31.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.++|||+||+.+.+.||+++|..||.|.++.+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~ 35 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN 35 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec
Confidence 5799999999999999999999999999886654
No 67
>KOG0533|consensus
Probab=97.42 E-value=0.0003 Score=45.45 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=34.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG 52 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g 52 (60)
.....+++|.|||+.++++||+++|++||.+..+-+.-+-.|
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G 121 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAG 121 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCC
Confidence 344578999999999999999999999999888766654433
No 68
>KOG0151|consensus
Probab=97.37 E-value=0.00027 Score=51.49 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=35.1
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
-++.++++|||||++.++|+.|-.-|..||+|.+|.|+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKim 207 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIM 207 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeee
Confidence 35678899999999999999999999999999999877
No 69
>KOG0415|consensus
Probab=97.36 E-value=0.00025 Score=48.49 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=36.6
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....+...-|||--|.+-++++||+-.|+.||.|.+++|.+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR 273 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR 273 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEe
Confidence 44455667899999999999999999999999999999998
No 70
>KOG0123|consensus
Probab=97.32 E-value=0.00033 Score=47.35 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=39.5
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....+|||-||+..++++.|++.|+.||+|.++.++.+..| +++|||
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g--~skG~g 314 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENG--KSKGFG 314 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEeccCC--CccceE
Confidence 456678999999999999999999999999999888875555 344443
No 71
>KOG4660|consensus
Probab=97.29 E-value=0.00025 Score=49.99 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=33.3
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....+.|+|-|||..+++++|++.|+.||+|.+|..-.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~ 109 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP 109 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc
Confidence 345667899999999999999999999999999874433
No 72
>KOG0131|consensus
Probab=97.18 E-value=0.00027 Score=44.38 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=30.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEE-EEeee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT-ACDRF 49 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v-~i~~~ 49 (60)
.-++|||||.++++|.-|-+.|+.||.+.+. .|+++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 3589999999999999999999999998653 45553
No 73
>KOG4661|consensus
Probab=97.04 E-value=0.00072 Score=48.78 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=33.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFI 50 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~ 50 (60)
.++|||.+|+-.+.-.||+.+|++||.|..+.|+++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa 441 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA 441 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecC
Confidence 4579999999999999999999999999998888754
No 74
>KOG0110|consensus
Probab=96.90 E-value=0.001 Score=48.23 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=32.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+..+|||.||+++++.++|+.+|...|.|.++.|.+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~k 549 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISK 549 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEec
Confidence 344599999999999999999999999999997775
No 75
>KOG3152|consensus
Probab=96.86 E-value=0.0019 Score=42.30 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=32.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...-+|+++||+...-..||+++++||+|..|.+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqp 108 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQP 108 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecc
Confidence 445699999999999999999999999999997764
No 76
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.64 E-value=0.0018 Score=36.83 Aligned_cols=40 Identities=38% Similarity=0.541 Sum_probs=22.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCceeEEEEee-eecCCCCc
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR-FIFGISPV 56 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~-~~~g~~~~ 56 (60)
|.+.+++..++.++|++.|++||+|.-|++.+ +..|+.++
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf 44 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRF 44 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEE
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEE
Confidence 66778999999999999999999998776664 22444433
No 77
>smart00361 RRM_1 RNA recognition motif.
Probab=96.64 E-value=0.0023 Score=33.33 Aligned_cols=33 Identities=18% Similarity=-0.123 Sum_probs=21.9
Q ss_pred HHHHHHHHh----cCCceeEEE-Eeeee-cCCCCccccC
Q psy7530 28 LEDVKNYFE----QFGPVYYTA-CDRFI-FGISPVKNFG 60 (60)
Q Consensus 28 e~~l~~~F~----~fG~V~~v~-i~~~~-~g~~~~k~fg 60 (60)
+++|+++|+ +||.|.++. +..+. .-+..+||||
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~ 40 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNV 40 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEE
Confidence 578899998 999999885 44322 1124566664
No 78
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.62 E-value=0.002 Score=31.95 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.1
Q ss_pred HHHHHhcCCceeEEEEee
Q psy7530 31 VKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 31 l~~~F~~fG~V~~v~i~~ 48 (60)
|+++|++||+|.++.+..
T Consensus 1 L~~~f~~fG~V~~i~~~~ 18 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFK 18 (56)
T ss_dssp HHHHHTTTS-EEEEEEET
T ss_pred ChHHhCCcccEEEEEEEe
Confidence 678999999999988876
No 79
>KOG4210|consensus
Probab=96.48 E-value=0.0035 Score=41.14 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=35.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
++|++|+..+++++|+.+|..+|.|..+.++. .......++||
T Consensus 188 ~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~-~~~s~~~kg~a 230 (285)
T KOG4210|consen 188 FFVGELDFSLTRDDLKEHFVSSGEITSVRLPT-DEESGDSKGFA 230 (285)
T ss_pred eeecccccccchHHHhhhccCcCcceeeccCC-CCCccchhhhh
Confidence 44999999999999999999999999888886 44444555553
No 80
>KOG4454|consensus
Probab=96.41 E-value=0.0011 Score=42.79 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=33.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+..+.|||+|+...++|+-|.++|-|.|+|..|.|..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~ 43 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPS 43 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCC
Confidence 4567899999999999999999999999998887765
No 81
>KOG4208|consensus
Probab=96.38 E-value=0.0073 Score=38.43 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=38.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC-CceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQF-GPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~f-G~V~~v~i~~~~~g~~~~k~fg 60 (60)
...-++|..+|.-..+..+..+|.|| |.|..+.+.| ..-++.+||||
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR-nkrTGNSKgYA 95 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR-NKRTGNSKGYA 95 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeec-ccccCCcCceE
Confidence 34558999999999999999999999 7777777766 56677888886
No 82
>KOG1190|consensus
Probab=96.33 E-value=0.0059 Score=42.41 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.++-+.+++|||+++|+||-+++.+||.|..+.+.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk 62 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK 62 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec
Confidence 345699999999999999999999999998887665
No 83
>KOG4209|consensus
Probab=96.10 E-value=0.0042 Score=39.77 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=38.2
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCcccc
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~f 59 (60)
.....+.+||||+.+.++.+++..+|+.+|.|..|.+..+.+.- +.|||
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~-~~k~~ 145 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG-HPKGF 145 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCC-Cccee
Confidence 34456789999999999999999999999999877777644332 24555
No 84
>KOG1548|consensus
Probab=95.96 E-value=0.0094 Score=40.55 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=26.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCce
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V 41 (60)
....+||.|||.++|-+++.+.|+.+|-|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI 161 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGII 161 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceE
Confidence 34569999999999999999999999987
No 85
>KOG0146|consensus
Probab=95.55 E-value=0.025 Score=37.77 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=33.0
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
..+.-++|||=.||.+..+.+|-+.|-.||-|.+..+-
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVF 318 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVF 318 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeee
Confidence 34567899999999999999999999999999886443
No 86
>KOG1457|consensus
Probab=95.46 E-value=0.013 Score=38.18 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=27.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEE
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTA 45 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~ 45 (60)
.+..|||.||.++++|++|+.+|+.|--..-..
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~ 241 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILK 241 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEE
Confidence 355799999999999999999999996543333
No 87
>KOG0115|consensus
Probab=95.44 E-value=0.015 Score=38.20 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFI 50 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~ 50 (60)
.-|+|.||+.-+++|.|++.|++||+|....+.-+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~ 67 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD 67 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc
Confidence 459999999999999999999999999886544433
No 88
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.40 E-value=0.026 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
-+-|.|.+++..+ ++..+|.+||+|.++.+.
T Consensus 3 wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 3 WISVSGFPPDLAE-EVLEHFASFGEIVDIYVP 33 (53)
T ss_pred EEEEEeECchHHH-HHHHHHHhcCCEEEEEcC
Confidence 4667888877554 466799999999887766
No 89
>KOG0129|consensus
Probab=95.40 E-value=0.043 Score=38.88 Aligned_cols=38 Identities=37% Similarity=0.621 Sum_probs=33.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHh-cCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFE-QFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~-~fG~V~~v~i~~~ 49 (60)
...+.+|||+||.-++-++|-..|+ -||-|.-|-|.+|
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD 406 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD 406 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC
Confidence 3467799999999999999999999 8999988877775
No 90
>KOG4212|consensus
Probab=95.06 E-value=0.022 Score=40.17 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=33.1
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
..+.+.+||.|||.+.|=..||+-|..||.|..++|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim 569 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM 569 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh
Confidence 3456779999999999999999999999999888874
No 91
>KOG4212|consensus
Probab=94.78 E-value=0.056 Score=38.20 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=40.5
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCcccc
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~f 59 (60)
..+...++||+||.+.+..+.|.+.|.-.|.|+.|...++..| .++||
T Consensus 211 ~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG--~s~G~ 258 (608)
T KOG4212|consen 211 SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG--NSRGF 258 (608)
T ss_pred CCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc--ccCCe
Confidence 3456778999999999999999999999999999988887777 44454
No 92
>KOG0120|consensus
Probab=94.67 E-value=0.037 Score=39.10 Aligned_cols=48 Identities=31% Similarity=0.422 Sum_probs=38.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+||...+++.++++.+.||.+..-.+.++.. +..+|||+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~-~g~skg~a 334 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA-TGNSKGFA 334 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc-ccccccee
Confidence 4567899999999999999999999999999888877443 23455553
No 93
>KOG0112|consensus
Probab=94.23 E-value=0.019 Score=42.95 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=34.9
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+....+..||+|||+..+++.+|+..|..+|.|.+|.|.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKt 406 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKT 406 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhcccccccccc
Confidence 3344567799999999999999999999999999998775
No 94
>KOG0226|consensus
Probab=93.87 E-value=0.087 Score=34.78 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...-+||.|-|..+++++-|-+.|.+|=.-....+.+ +.-...+||||
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR-dkRTgKSkgyg 235 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR-DKRTGKSKGYG 235 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccc-cccccccccce
Confidence 4556899999999999999999999998777777776 55556677776
No 95
>KOG1855|consensus
Probab=93.77 E-value=0.13 Score=36.04 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
-..+.|.+-|||.+-.-+.|+++|+.+|.|..|.|-+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIck 265 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICK 265 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecC
Confidence 4677899999999999999999999999999997765
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.84 E-value=0.11 Score=35.84 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=27.7
Q ss_pred ceEEEeCCCCCCCHHH------HHHHHhcCCceeEEEEee
Q psy7530 15 KKIFVGGLSAPTTLED------VKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~------l~~~F~~fG~V~~v~i~~ 48 (60)
.-+||-+||+.+-.|+ -.+||.|||.|..+.|-+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk 154 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK 154 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc
Confidence 3489999998888776 358999999998877665
No 97
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.71 E-value=0.31 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
+....+|--..|......||.++|+.||.|.
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I~ 36 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQIY 36 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCEE
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcEE
Confidence 3444555555999999999999999999985
No 98
>KOG1457|consensus
Probab=92.33 E-value=0.2 Score=32.78 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=24.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~f 38 (60)
...+.|||.+||.++...+|..+|..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f 58 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRF 58 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccC
Confidence 347889999999999999999999998
No 99
>KOG4211|consensus
Probab=91.87 E-value=0.27 Score=34.88 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=25.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.-+=+.+|||.+|++||.++|+..+ |.++.+.+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r 43 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR 43 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEec
Confidence 3355689999999999999999876 45555555
No 100
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=90.87 E-value=0.35 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCceeEEEE
Q psy7530 29 EDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 29 ~~l~~~F~~fG~V~~v~i 46 (60)
.+||++|+++|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999975544
No 101
>KOG1190|consensus
Probab=90.18 E-value=0.54 Score=33.02 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
.+..+...|+|.+++||+|+++|.+-|-..
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~v 442 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQV 442 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceE
Confidence 344688999999999999999999999863
No 102
>KOG0147|consensus
Probab=89.77 E-value=0.073 Score=37.95 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..+.+|+-.|+..+++.||.++|+.+|+|.+|.++.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~ 213 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIG 213 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeec
Confidence 345688888999999999999999999999998886
No 103
>KOG2891|consensus
Probab=88.76 E-value=0.52 Score=31.92 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=29.6
Q ss_pred ccCCcceEEEeCCCCC------------CCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSAP------------TTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~------------~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+......+++.+||.. -+|+-|+..|+.||+|..|+|..
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3344556788877743 36788999999999999998774
No 104
>KOG4206|consensus
Probab=85.60 E-value=1.9 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=30.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...-+|+-+||..++.+.|..+|+||.--.+|....
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~ 180 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP 180 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEecc
Confidence 445699999999999999999999998777765554
No 105
>KOG4849|consensus
Probab=84.99 E-value=0.53 Score=32.66 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCce
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~fG~V 41 (60)
+|||||-|-+|++||.+....-|--
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G~~ 107 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTGLA 107 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhhHH
Confidence 8999999999999999998877753
No 106
>KOG0106|consensus
Probab=84.67 E-value=0.56 Score=30.01 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=29.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
...++.|-+++..+...+|.++|++||.+..+..+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~ 132 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR 132 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh
Confidence 45679999999999999999999999999555443
No 107
>KOG4676|consensus
Probab=83.36 E-value=0.92 Score=31.78 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=30.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+-|-|.||++.++.+.+..+|...|+|.++.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp 41 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYP 41 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccC
Confidence 3688999999999999999999999998876553
No 108
>KOG0128|consensus
Probab=81.72 E-value=0.94 Score=34.13 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=31.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..++||.|+|+..|.+.|+..+..+|.+.++.++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt 770 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT 770 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh
Confidence 44699999999999999999999999998886554
No 109
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=81.28 E-value=0.41 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=19.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc-CCce
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQ-FGPV 41 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~-fG~V 41 (60)
....||-|.+||+..||+++.+..++ ++.-
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~ 35 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDE 35 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccc
Confidence 34569999999999999998886666 5554
No 110
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=80.09 E-value=6.7 Score=22.03 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=29.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcC--CceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQF--GPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~f--G~V~~v~i~~~~~g~~~~k~fg 60 (60)
+.|=+.|||...+.++|.+.+... |..+=+.++. ++...-+.|||
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPi-Df~~~~N~GYA 48 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPI-DFKNKCNLGYA 48 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeee-eccCCCceEEE
Confidence 357789999999999999988775 3333334444 44444445543
No 111
>KOG1995|consensus
Probab=78.58 E-value=2.9 Score=28.62 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=27.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
......+||-+||..++++++.++|.|.|.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ik 94 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIK 94 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceec
Confidence 34456799999999999999999999999874
No 112
>KOG4211|consensus
Probab=77.56 E-value=2.4 Score=30.27 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeE
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~ 43 (60)
.-+=+.+||+.++++||.++|+-.=.|.+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~ 132 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPD 132 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCccccc
Confidence 34556899999999999999998876655
No 113
>KOG1456|consensus
Probab=77.00 E-value=8.2 Score=27.17 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=31.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+.-+.|.+|-..++|.||-+..+.||.|.-|.|+.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P 65 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP 65 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecc
Confidence 345689999999999999999999999998887764
No 114
>KOG0112|consensus
Probab=76.78 E-value=3.1 Score=31.75 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=31.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.-.+++|+|+|..-+.-..|.+.|..||.|..+++..
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h 489 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH 489 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc
Confidence 3467899999999999999999999999998876653
No 115
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=74.44 E-value=4.5 Score=22.66 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=16.7
Q ss_pred ceEEEeCCCCCCCHHHH----HHHHhcC-CceeEE
Q psy7530 15 KKIFVGGLSAPTTLEDV----KNYFEQF-GPVYYT 44 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l----~~~F~~f-G~V~~v 44 (60)
.-|+|.|||.+.+-..+ +++++.+ |.|.+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 35899999998887655 5555566 577555
No 116
>KOG4210|consensus
Probab=74.07 E-value=1.4 Score=29.10 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCcccc
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~f 59 (60)
....+|+|++.+.+.+.+....+..+|.+..+.... -.+..++|++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~-~~~~~~sk~~ 132 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSS-LEDSLSSKGG 132 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhh-hccccccccc
Confidence 467899999999999998999999999876654443 3455555554
No 117
>KOG0105|consensus
Probab=73.88 E-value=10 Score=24.36 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=32.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG 52 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g 52 (60)
..-++.|.+||+..+=+||+++..+.|.|-=.++-++..|
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~G 153 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVG 153 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccce
Confidence 4557999999999999999999999999855555554433
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=73.80 E-value=7.2 Score=20.29 Aligned_cols=25 Identities=24% Similarity=0.709 Sum_probs=21.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~f 38 (60)
+..+|+|.|+. +.+.+|++.||..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y 28 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEY 28 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHh
Confidence 45689999996 57888899999999
No 119
>KOG2193|consensus
Probab=73.51 E-value=2.6 Score=29.99 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~f 38 (60)
.++|+|+|++..+..||+..|...
T Consensus 2 nklyignL~p~~~psdl~svfg~a 25 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA 25 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc
Confidence 579999999999999999998765
No 120
>KOG2135|consensus
Probab=73.38 E-value=1.8 Score=30.93 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=17.8
Q ss_pred CHHHHHHHHhcCCceeEEEEe
Q psy7530 27 TLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 27 ~e~~l~~~F~~fG~V~~v~i~ 47 (60)
+-++|..+|.+||+|.++.+.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~ 406 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVD 406 (526)
T ss_pred hHhhhhhhhhhcCcccccccc
Confidence 448899999999999888665
No 121
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=72.44 E-value=2.4 Score=23.53 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=20.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHH
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYF 35 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F 35 (60)
...+++.|.|||....+++|++..
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356789999999999999999763
No 122
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=70.57 E-value=4.1 Score=19.16 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy7530 24 APTTLEDVKNYFEQFGP 40 (60)
Q Consensus 24 ~~~~e~~l~~~F~~fG~ 40 (60)
.+++++.||+.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999988653
No 123
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=70.50 E-value=6.1 Score=25.88 Aligned_cols=33 Identities=9% Similarity=-0.154 Sum_probs=26.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
....|+|||+.++-+=+..+++.--.+.++.+|
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 356799999999999999998888776565555
No 124
>KOG4008|consensus
Probab=68.68 E-value=5.6 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
.+...||+-|+|..++++-|.+..++.|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345569999999999999999999999977655
No 125
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=65.81 E-value=4.7 Score=27.17 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+++.|...|+..+++-.++-..|.+||+|++|.+..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~ 49 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIK 49 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEec
Confidence 456688889999999999999999999999998876
No 126
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=65.22 E-value=10 Score=21.37 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=17.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
-+-|=|-|+.. -..+-++|++||+|.+.
T Consensus 8 wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~ 35 (100)
T PF05172_consen 8 WVTVFGFPPSA-SNQVLRHFSSFGTILEH 35 (100)
T ss_dssp EEEEE---GGG-HHHHHHHHHCCS-EECE
T ss_pred EEEEEccCHHH-HHHHHHHHHhcceEEEe
Confidence 35566777774 45578899999999655
No 127
>KOG0128|consensus
Probab=63.73 E-value=0.23 Score=37.20 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=30.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
..+.||.||++.+.++||+..|..+|.+..+.+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~ 700 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV 700 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHH
Confidence 3468999999999999999999999998877555
No 128
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=62.95 E-value=14 Score=21.78 Aligned_cols=37 Identities=19% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....+++++++.....+++...|..+|.+..+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 4556799999999999999999999999996665443
No 129
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=59.86 E-value=12 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.779 Sum_probs=15.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhc
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~ 37 (60)
.||+|+.+ ++++|.+||++
T Consensus 3 siWiG~f~---s~~el~~Y~e~ 21 (122)
T PF14112_consen 3 SIWIGNFK---SEDELEEYFEI 21 (122)
T ss_pred EEEEecCC---CHHHHHHHhCc
Confidence 58999774 89999999954
No 130
>COG5584 Predicted small secreted protein [Function unknown]
Probab=59.60 E-value=10 Score=21.67 Aligned_cols=27 Identities=26% Similarity=0.189 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 22 LSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 22 L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
++.+---+-+++.|.|+|+|..-+|..
T Consensus 30 is~e~alk~vk~afk~~mnI~GSwI~~ 56 (103)
T COG5584 30 ISRENALKVVKEAFKQFMNIKGSWIVY 56 (103)
T ss_pred cChhHHHHHHHHHhcccCCcceeEEEE
Confidence 455555577899999999999877664
No 131
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=58.68 E-value=11 Score=24.08 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHh--cCCceeEEEE
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFE--QFGPVYYTAC 46 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~--~fG~V~~v~i 46 (60)
..-++|||||+.++..-|.+++. .||.+.-+-+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 45589999999999999999987 5676654433
No 132
>KOG3432|consensus
Probab=58.28 E-value=19 Score=21.09 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=24.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
+.++++|- ..++|.++|++.|..|-.=.++.|.
T Consensus 34 r~~Nf~vv--~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 34 REPNFLVV--DSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred CCCCEEEE--eccCCHHHHHHHHHhhccccCeEEE
Confidence 34566663 5689999999999999876555443
No 133
>PRK00523 hypothetical protein; Provisional
Probab=56.26 E-value=11 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy7530 24 APTTLEDVKNYFEQFGP 40 (60)
Q Consensus 24 ~~~~e~~l~~~F~~fG~ 40 (60)
+.++|+.||..+.|.|.
T Consensus 38 Ppine~mir~M~~QMGq 54 (72)
T PRK00523 38 PPITENMIRAMYMQMGR 54 (72)
T ss_pred cCCCHHHHHHHHHHhCC
Confidence 56899999999999995
No 134
>KOG2253|consensus
Probab=54.95 E-value=9.1 Score=28.33 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCc
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPV 56 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~ 56 (60)
+....+|||++...+..+=++......|-|- .+.++.|||-.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~--s~kr~~fgf~~f 80 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVP--SWKRDKFGFCEF 80 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcch--hhhhhhhcccch
Confidence 3455799999999999999999999999984 445555777554
No 135
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.91 E-value=12 Score=19.62 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy7530 24 APTTLEDVKNYFEQFGP 40 (60)
Q Consensus 24 ~~~~e~~l~~~F~~fG~ 40 (60)
+.++|+.||..+.|.|.
T Consensus 30 Ppine~mir~M~~QMG~ 46 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGR 46 (64)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 45899999999999995
No 136
>PRK01844 hypothetical protein; Provisional
Probab=54.05 E-value=13 Score=20.02 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy7530 24 APTTLEDVKNYFEQFGP 40 (60)
Q Consensus 24 ~~~~e~~l~~~F~~fG~ 40 (60)
+.++|+-||..+.|.|.
T Consensus 37 Ppine~mir~Mm~QMGq 53 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQ 53 (72)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 46899999999999995
No 137
>KOG2068|consensus
Probab=51.71 E-value=5.5 Score=27.07 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=25.4
Q ss_pred ceEEEeCCCCCCCHHHH---HHHHhcCCceeEEEEee
Q psy7530 15 KKIFVGGLSAPTTLEDV---KNYFEQFGPVYYTACDR 48 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l---~~~F~~fG~V~~v~i~~ 48 (60)
...||-+|+.+...+++ .++|.|||.|..|.+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~ 114 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNK 114 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecC
Confidence 45788889877666554 36899999998876655
No 138
>KOG1456|consensus
Probab=51.71 E-value=42 Score=23.79 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=31.5
Q ss_pred CcceEEEeCCCCCC-CHHHHHHHHhcCCceeEEEEeeeecCC
Q psy7530 13 RTKKIFVGGLSAPT-TLEDVKNYFEQFGPVYYTACDRFIFGI 53 (60)
Q Consensus 13 ~~~klfVg~L~~~~-~e~~l~~~F~~fG~V~~v~i~~~~~g~ 53 (60)
...-+-|-+|.... +-+.|=.+|.+||.|..|..++-..|.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gt 327 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGT 327 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccce
Confidence 44567888887554 448899999999999999888755443
No 139
>PF14893 PNMA: PNMA
Probab=51.59 E-value=15 Score=24.91 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=18.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHh
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFE 36 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~ 36 (60)
+-|.|.+||.+++++++++...
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHH
Confidence 4589999999999998887643
No 140
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.17 E-value=23 Score=19.65 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCc
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGP 40 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~ 40 (60)
.-+|-=|....+++++++.|+.+|.
T Consensus 50 Sy~V~Fl~~~~s~eev~~ele~mga 74 (88)
T COG4009 50 SYYVVFLEEVESEEEVERELEDMGA 74 (88)
T ss_pred eEEEEEEeccCCHHHHHHHHHHhCc
Confidence 3455557888999999999999985
No 141
>KOG4676|consensus
Probab=48.23 E-value=3.5 Score=28.99 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEE
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i 46 (60)
+.++|++|+..+..+++-+.|+.+|+|.-.++
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ 183 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHT 183 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhh
Confidence 45899999999999999999999999865433
No 142
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=47.82 E-value=19 Score=16.90 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=15.3
Q ss_pred eCCCCCCCHHHHHHHHhcC
Q psy7530 20 GGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~f 38 (60)
-+|++.++.++|++.|.+.
T Consensus 6 Lgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 6 LGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 4688899999999887654
No 143
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=47.51 E-value=31 Score=16.05 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCc
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGP 40 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~ 40 (60)
++++.+.....+.++|+++...+|-
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCC
Confidence 4667776657888999999999985
No 144
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=46.83 E-value=22 Score=17.41 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.7
Q ss_pred eCCCCCCCHHHHHHHHhcC
Q psy7530 20 GGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~f 38 (60)
-||+.+++.++|+..|.+.
T Consensus 6 Lgl~~~~~~~eik~~y~~l 24 (64)
T PF00226_consen 6 LGLPPDASDEEIKKAYRRL 24 (64)
T ss_dssp CTSTTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHhh
Confidence 4789999999999988653
No 145
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=46.01 E-value=21 Score=17.11 Aligned_cols=20 Identities=15% Similarity=0.527 Sum_probs=15.8
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
|-+|+..++.++|++.|.+.
T Consensus 6 vLgl~~~~~~~~ik~ay~~l 25 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKL 25 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 35688889999999887654
No 146
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=44.00 E-value=24 Score=23.21 Aligned_cols=32 Identities=6% Similarity=-0.079 Sum_probs=23.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
.+.|+|||+.++.+.+..+.+.-..+..+.++
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm 134 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLM 134 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeee
Confidence 36789999999999999888764455444333
No 147
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=43.95 E-value=29 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=18.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhc
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~ 37 (60)
-..|+|+|+.++.+-|.+....
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999999888888764
No 148
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=43.06 E-value=46 Score=20.94 Aligned_cols=27 Identities=11% Similarity=-0.087 Sum_probs=22.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
-+.|+|||+.++.+-+.++++.+|-..
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~~~ 122 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKFRL 122 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCCce
Confidence 378999999999999999997676543
No 149
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=42.48 E-value=8.5 Score=20.27 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=13.9
Q ss_pred CcceEEEeCCCCCCCHHH
Q psy7530 13 RTKKIFVGGLSAPTTLED 30 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~ 30 (60)
..+.+|+|++|..+-++.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 467899999998776554
No 150
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.03 E-value=23 Score=18.08 Aligned_cols=30 Identities=3% Similarity=-0.196 Sum_probs=22.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCceeEEEE
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~fG~V~~v~i 46 (60)
.+.-.+|+..+.++|++.|+..+.-..+++
T Consensus 42 ~~~v~~p~~~~~~~l~~~l~~l~~~l~l~i 71 (75)
T cd04870 42 GILVQIPDSADSEALLKDLLFKAHELGLQV 71 (75)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCceE
Confidence 455568999899999999998875433433
No 151
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=41.37 E-value=29 Score=15.79 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHhcCCce
Q psy7530 25 PTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 25 ~~~e~~l~~~F~~fG~V 41 (60)
..++++|++....+|-+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46789999999999975
No 152
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.60 E-value=30 Score=18.58 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy7530 24 APTTLEDVKNYFEQFGP 40 (60)
Q Consensus 24 ~~~~e~~l~~~F~~fG~ 40 (60)
+.++|+.+|..+.|.|.
T Consensus 37 Ppine~~iR~M~~qmGq 53 (71)
T COG3763 37 PPINEEMIRMMMAQMGQ 53 (71)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 56899999999999995
No 153
>KOG4410|consensus
Probab=40.54 E-value=55 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCce
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V 41 (60)
.-++++|||.++.-.||++...+-|-+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC
Confidence 459999999999999999998887754
No 154
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=40.39 E-value=30 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhcCCceeEEEE
Q psy7530 21 GLSAPTTLEDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 21 ~L~~~~~e~~l~~~F~~fG~V~~v~i 46 (60)
+=|+.+++++|+++|+..-+|..+..
T Consensus 165 GPPf~v~~~ev~~l~~~~f~i~~l~~ 190 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFGPGFEIEELEE 190 (218)
T ss_dssp SSS----HHHHHHHHTTTEEEEEEEE
T ss_pred CcCCCCCHHHHHHHhcCCcEEEEEec
Confidence 55889999999999998878877654
No 155
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=36.59 E-value=72 Score=18.63 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=19.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG 39 (60)
-+.++|+|++++.+.+...++..-
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~~ 102 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEPP 102 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcCC
Confidence 467899999999999998887543
No 156
>PHA02114 hypothetical protein
Probab=36.22 E-value=50 Score=19.16 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=8.1
Q ss_pred HHHhcCCcee
Q psy7530 33 NYFEQFGPVY 42 (60)
Q Consensus 33 ~~F~~fG~V~ 42 (60)
-+|.|||.|.
T Consensus 77 ~~fd~~gtiv 86 (127)
T PHA02114 77 GAFDQYGTIV 86 (127)
T ss_pred hhHhhcCeEE
Confidence 3899999973
No 157
>KOG1365|consensus
Probab=36.05 E-value=40 Score=23.97 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=21.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
-+-..+||+++++.|+.++|.+-+.|.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~ 189 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVT 189 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCccc
Confidence 355689999999999999998655443
No 158
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=35.75 E-value=47 Score=21.22 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=21.7
Q ss_pred eCCCCCCCHHHHHHHHhcCCceeEEEE
Q psy7530 20 GGLSAPTTLEDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG~V~~v~i 46 (60)
++=|+.+++++++++|++.-.|..+..
T Consensus 171 ~GPPf~v~~~e~~~lf~~~~~i~~l~~ 197 (226)
T PRK13256 171 QTPPYSVTQAELIKNFSAKIKFELIDS 197 (226)
T ss_pred CCCCCcCCHHHHHHhccCCceEEEeee
Confidence 445788999999999999888876643
No 159
>COG3194 DAL3 Ureidoglycolate hydrolase [Nucleotide transport and metabolism]
Probab=34.70 E-value=18 Score=22.42 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=10.5
Q ss_pred HHHHhcCCceeEE
Q psy7530 32 KNYFEQFGPVYYT 44 (60)
Q Consensus 32 ~~~F~~fG~V~~v 44 (60)
++.|+.||.|.+.
T Consensus 11 ~EaFapfGdVIe~ 23 (168)
T COG3194 11 KEAFAPFGDVIET 23 (168)
T ss_pred hhhhccccccccc
Confidence 5689999999653
No 160
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=34.17 E-value=28 Score=19.79 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=16.5
Q ss_pred eCCCCCCCHHHHHHHHhcCCc
Q psy7530 20 GGLSAPTTLEDVKNYFEQFGP 40 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG~ 40 (60)
|.|+..+++++|.+++++...
T Consensus 75 G~l~~kI~d~~L~~iL~~i~~ 95 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQISE 95 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHCC
T ss_pred CCCCCCcCHHHHHHHHHHHhh
Confidence 778999999999999988764
No 161
>PHA01632 hypothetical protein
Probab=33.65 E-value=51 Score=17.06 Aligned_cols=21 Identities=14% Similarity=0.350 Sum_probs=16.3
Q ss_pred EEEeCCCCCCCHHHHHHHHhc
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~ 37 (60)
+.|-.+|..-||++||....+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445678999999999987654
No 162
>PRK04239 hypothetical protein; Provisional
Probab=32.62 E-value=45 Score=19.25 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.6
Q ss_pred eCCCCCCCHHHHHHHHhcCC
Q psy7530 20 GGLSAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG 39 (60)
|.|+..+++++|..+.++.-
T Consensus 80 G~i~~ki~e~~L~~lL~~v~ 99 (110)
T PRK04239 80 GRIQGPIDDEQLKEILEQLT 99 (110)
T ss_pred CCCCCCcCHHHHHHHHHHHh
Confidence 78899999999999988754
No 163
>CHL00030 rpl23 ribosomal protein L23
Probab=32.30 E-value=95 Score=17.23 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=22.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCC--ceeEEEEe
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFG--PVYYTACD 47 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG--~V~~v~i~ 47 (60)
+-|+=-.+.+++..++++++++.- .|..|...
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 445555689999999999999953 44444443
No 164
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=32.11 E-value=49 Score=21.02 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=14.2
Q ss_pred cceEEEeCCC---CCCCHHHHHHH
Q psy7530 14 TKKIFVGGLS---APTTLEDVKNY 34 (60)
Q Consensus 14 ~~klfVg~L~---~~~~e~~l~~~ 34 (60)
..|||||||+ +..|..-|+++
T Consensus 7 p~rLFvgGlHG~Egk~t~~iL~~l 30 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDTSPILKRL 30 (193)
T ss_pred ceEEEEeeccCcchhhHHHHHHHh
Confidence 6799999997 44455544443
No 165
>KOG0738|consensus
Probab=30.78 E-value=37 Score=24.31 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=17.3
Q ss_pred cceEEE---eCCCCCCCHHHHHHHHhcC
Q psy7530 14 TKKIFV---GGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 14 ~~klfV---g~L~~~~~e~~l~~~F~~f 38 (60)
.+.+|| .|+||+++|. |++.|++-
T Consensus 350 ~k~VmVLAATN~PWdiDEA-lrRRlEKR 376 (491)
T KOG0738|consen 350 SKVVMVLAATNFPWDIDEA-LRRRLEKR 376 (491)
T ss_pred ceeEEEEeccCCCcchHHH-HHHHHhhh
Confidence 345666 5899999887 66677763
No 166
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=30.45 E-value=58 Score=18.91 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCceeEEEEeeeecCCCCcccc
Q psy7530 28 LEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59 (60)
Q Consensus 28 e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~f 59 (60)
-+++++..++.| +..+.+.. -.|+.+-||+
T Consensus 13 l~~vkeaL~~~G-~~gmTv~~-V~G~G~Qkg~ 42 (112)
T COG0347 13 LDDVKEALEKAG-VPGMTVTE-VKGRGRQKGH 42 (112)
T ss_pred hHHHHHHHHHcC-CCceEEEe-eeeecccCCc
Confidence 467899999999 77776665 5666666643
No 167
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=30.27 E-value=36 Score=22.82 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHhcCCceeE
Q psy7530 24 APTTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 24 ~~~~e~~l~~~F~~fG~V~~ 43 (60)
..+++++|.+.|..||+...
T Consensus 139 n~~~e~~L~~i~~~yGEe~~ 158 (305)
T TIGR00006 139 NTYSEEDLERILKKYGEEKF 158 (305)
T ss_pred hhCCHHHHHHHHHHhcCcch
Confidence 35789999999999998643
No 168
>PF15063 TC1: Thyroid cancer protein 1
Probab=30.12 E-value=35 Score=18.63 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=24.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCce
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V 41 (60)
..+|--+.||-.+++.+.|..+|..-|.-
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34566778999999999999999999864
No 169
>smart00457 MACPF membrane-attack complex / perforin.
Probab=29.86 E-value=46 Score=20.17 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=18.5
Q ss_pred eCCCCCCCHHHHHHHHhcCCc
Q psy7530 20 GGLSAPTTLEDVKNYFEQFGP 40 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG~ 40 (60)
..||...+..+...+|+.||+
T Consensus 31 ~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 31 RDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HhCccccCHHHHHHHHHHhCC
Confidence 368888889999999999996
No 170
>PHA01782 hypothetical protein
Probab=29.40 E-value=43 Score=20.91 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=18.9
Q ss_pred CCCCCCCHHHHHHHHhcCCcee
Q psy7530 21 GLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 21 ~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
-+|.-.....|.++|..||+|.
T Consensus 62 aMPKGsRrnAL~~wlv~~Gkv~ 83 (177)
T PHA01782 62 AMPKGSRRNALAEWLVKFGKVQ 83 (177)
T ss_pred HccccchhhHHHHHHHHhCCcc
Confidence 4677788889999999999985
No 171
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=29.26 E-value=80 Score=17.79 Aligned_cols=26 Identities=15% Similarity=0.025 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 23 SAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 23 ~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
|....++.|++++.+.-...-+-+.|
T Consensus 5 S~SMP~~~L~~l~~~a~~~~~~~V~R 30 (113)
T PF09673_consen 5 SFSMPDASLRNLLKQAERAGVVVVFR 30 (113)
T ss_pred ECCCCHHHHHHHHHHHHhCCcEEEEE
Confidence 45677788888887765553333333
No 172
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=28.83 E-value=39 Score=22.46 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHhcCCceeE
Q psy7530 24 APTTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 24 ~~~~e~~l~~~F~~fG~V~~ 43 (60)
...++++|.+.|..||+...
T Consensus 137 n~~~~~~L~~i~~~yGee~~ 156 (296)
T PRK00050 137 NTYSEEELARIFKEYGEERF 156 (296)
T ss_pred hhCCHHHHHHHHHHhcCcch
Confidence 34689999999999998743
No 173
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=28.73 E-value=60 Score=17.89 Aligned_cols=19 Identities=0% Similarity=0.134 Sum_probs=15.3
Q ss_pred CCHHHHHHHHhcCCceeEE
Q psy7530 26 TTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 26 ~~e~~l~~~F~~fG~V~~v 44 (60)
.+++||++++.+.+....+
T Consensus 55 ssd~eL~d~~~~~~~~~~~ 73 (82)
T cd06397 55 SSNKELQDFYRLSHRESTE 73 (82)
T ss_pred cchHHHHHHHHhcccccCc
Confidence 5789999999999885433
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=28.29 E-value=53 Score=20.27 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=20.5
Q ss_pred CcceEEEeCCCCCC----CHHHHHHHHhcCCceeEEE
Q psy7530 13 RTKKIFVGGLSAPT----TLEDVKNYFEQFGPVYYTA 45 (60)
Q Consensus 13 ~~~klfVg~L~~~~----~e~~l~~~F~~fG~V~~v~ 45 (60)
....+-|.=|.... +-..+-+..+.||+|.+|.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT 121 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVT 121 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceee
Confidence 34456665444333 3345556788999999983
No 175
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.84 E-value=52 Score=20.76 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=16.4
Q ss_pred ccCCcceEEEeCCC---CCCCHHHHH
Q psy7530 10 MVTRTKKIFVGGLS---APTTLEDVK 32 (60)
Q Consensus 10 ~~~~~~klfVg~L~---~~~~e~~l~ 32 (60)
.+...++||||+|+ +..|+.-|+
T Consensus 11 gdgpVr~lfV~GlHGdEgk~te~ilr 36 (198)
T COG4073 11 GDGPVRRLFVGGLHGDEGKATEPILR 36 (198)
T ss_pred CCCceeeEEEeeccCcccchhhhhhh
Confidence 33446779999996 566777775
No 176
>PF14396 CFTR_R: Cystic fibrosis TM conductance regulator (CFTR), regulator domain; PDB: 1XMI_C 2PZE_A 1XMJ_A 2PZF_A 2PZG_A 2BBO_A 2BBS_B 2BBT_A 1R0X_A 1R0Z_A ....
Probab=27.78 E-value=20 Score=22.94 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHh
Q psy7530 21 GLSAPTTLEDVKNYFE 36 (60)
Q Consensus 21 ~L~~~~~e~~l~~~F~ 36 (60)
.|+.+++|+||++.|.
T Consensus 183 eIseEinEEDlkeCF~ 198 (214)
T PF14396_consen 183 EISEEINEEDLKECFF 198 (214)
T ss_dssp ----------------
T ss_pred cchhhhCHHHHHHHhh
Confidence 3567889999999874
No 177
>smart00703 NRF N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4). Also present in several other worm and fly proteins.
Probab=27.63 E-value=44 Score=18.57 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.7
Q ss_pred eEEEeC-CCCCCCHHHHHHHHhcCCc
Q psy7530 16 KIFVGG-LSAPTTLEDVKNYFEQFGP 40 (60)
Q Consensus 16 klfVg~-L~~~~~e~~l~~~F~~fG~ 40 (60)
.+.+|- +|..++++|+++++.++..
T Consensus 71 ~~~~gvC~P~sCs~~dv~~l~~~~~~ 96 (110)
T smart00703 71 VLRTGVCLPSSCSAADLKTLLNQLSK 96 (110)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344554 7999999999999988755
No 178
>KOG2318|consensus
Probab=27.59 E-value=1.2e+02 Score=22.57 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=32.0
Q ss_pred cCCcceEEEeCCCCCCC-HHHHHHHHhcC----CceeEEEEeeeecC
Q psy7530 11 VTRTKKIFVGGLSAPTT-LEDVKNYFEQF----GPVYYTACDRFIFG 52 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~-e~~l~~~F~~f----G~V~~v~i~~~~~g 52 (60)
...+++|-|-|+.|+.- -+||--+|..| |.|.+|.|-.-.||
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFG 217 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFG 217 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhh
Confidence 45678999999999754 48898888888 68988876553344
No 179
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=27.16 E-value=45 Score=18.62 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=16.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
..||+|+.|...+.+.|++. ....|.
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi 31 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVI 31 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEE
Confidence 46999999876665555542 344443
No 180
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=26.94 E-value=62 Score=13.36 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=8.3
Q ss_pred CCCHHHHHHHH
Q psy7530 25 PTTLEDVKNYF 35 (60)
Q Consensus 25 ~~~e~~l~~~F 35 (60)
..+++|+|.+|
T Consensus 9 p~SNddFrkmf 19 (21)
T PF05391_consen 9 PKSNDDFRKMF 19 (21)
T ss_pred ccchHHHHHHH
Confidence 45778888887
No 181
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=26.85 E-value=43 Score=18.88 Aligned_cols=9 Identities=44% Similarity=1.006 Sum_probs=7.9
Q ss_pred ceEEEeCCC
Q psy7530 15 KKIFVGGLS 23 (60)
Q Consensus 15 ~klfVg~L~ 23 (60)
..||||++|
T Consensus 93 ~~lyvGG~p 101 (131)
T PF00054_consen 93 GPLYVGGLP 101 (131)
T ss_dssp SEEEESSSS
T ss_pred cCEEEccCC
Confidence 459999999
No 182
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=26.66 E-value=33 Score=20.71 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=9.6
Q ss_pred HHHHhcCCceeEE
Q psy7530 32 KNYFEQFGPVYYT 44 (60)
Q Consensus 32 ~~~F~~fG~V~~v 44 (60)
.+.|++||.|.+.
T Consensus 11 ~eaFaPyG~vi~~ 23 (165)
T PF04115_consen 11 PEAFAPYGDVIEL 23 (165)
T ss_dssp HHHHTTTEEEE-S
T ss_pred HHHhccceeEEcc
Confidence 3589999999654
No 183
>KOG4285|consensus
Probab=26.44 E-value=49 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 21 GLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 21 ~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
+.|+- .-.-+..+|++||+|.++
T Consensus 204 GFppg-~~s~vL~~F~~cG~Vvkh 226 (350)
T KOG4285|consen 204 GFPPG-QVSIVLNLFSRCGEVVKH 226 (350)
T ss_pred ccCcc-chhHHHHHHHhhCeeeee
Confidence 34444 334577899999999765
No 184
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=26.22 E-value=32 Score=17.50 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHhcCCcee
Q psy7530 22 LSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 22 L~~~~~e~~l~~~F~~fG~V~ 42 (60)
|+.+.|+++|.+.....+.+.
T Consensus 6 ls~~lTeEEl~~~i~~L~~~~ 26 (61)
T TIGR01639 6 LSKKLSKEELNELINSLDEIP 26 (61)
T ss_pred HhHHccHHHHHHHHHhhcCCC
Confidence 567788999988888777764
No 185
>KOG0718|consensus
Probab=26.21 E-value=38 Score=24.59 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.8
Q ss_pred EeCCCCCCCHHHHHHHHhcCCce
Q psy7530 19 VGGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~fG~V 41 (60)
+-|||+++|.|+|+..+.+...+
T Consensus 14 ~LNlpkdAt~eeI~~AYrr~~~l 36 (546)
T KOG0718|consen 14 LLNLPKDATDEEIKKAYRRLSRL 36 (546)
T ss_pred HhCCCcccCHHHHHHHHHHHHHh
Confidence 46899999999999998887665
No 186
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=25.86 E-value=1.1e+02 Score=19.10 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=18.7
Q ss_pred eCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 20 GGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
++-|+.++.++|+++|+..-.|..+
T Consensus 164 ~gPp~~~~~~el~~~~~~~~~i~~~ 188 (218)
T PRK13255 164 AGPPFSVSDEEVEALYAGCFEIELL 188 (218)
T ss_pred CCCCCCCCHHHHHHHhcCCceEEEe
Confidence 3446789999999999985455444
No 187
>PF07979 Intimin_C: Intimin C-type lectin domain; InterPro: IPR013117 This domain is found at the C terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure []. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Escherichia coli to mammalian host cells. Intimin targets the translocated intimin receptor (Tir), which is exported by the bacteria and integrated into the host cell plasma membrane.; GO: 0005488 binding, 0009405 pathogenesis, 0009986 cell surface; PDB: 1CWV_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 3NCX_B 3NCW_D.
Probab=25.71 E-value=38 Score=19.33 Aligned_cols=20 Identities=20% Similarity=0.645 Sum_probs=15.7
Q ss_pred eCCCCCCCHHHHHHHHhcCCce
Q psy7530 20 GGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG~V 41 (60)
+.|| .+.++|..+|.++|..
T Consensus 27 ~~Lp--sS~~~L~~vy~~WGaa 46 (101)
T PF07979_consen 27 GRLP--SSQSELKDVYNEWGAA 46 (101)
T ss_dssp CESB--SSHHHHHHHHHHHSSG
T ss_pred ccCc--ccHHHHHHHHHhhccc
Confidence 4466 5678899999999974
No 188
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=25.35 E-value=48 Score=17.49 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=7.9
Q ss_pred CCHHHHHHHHhcC
Q psy7530 26 TTLEDVKNYFEQF 38 (60)
Q Consensus 26 ~~e~~l~~~F~~f 38 (60)
+|+++|+++|+.-
T Consensus 1 vte~el~~yY~~n 13 (121)
T PF13145_consen 1 VTEEELRAYYEEN 13 (121)
T ss_dssp --HHHHHHHHHH-
T ss_pred CCHHHHHHHHHHH
Confidence 4678888887754
No 189
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=24.92 E-value=1.1e+02 Score=18.46 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=12.3
Q ss_pred HHHHHHhcCCceeEEEE
Q psy7530 30 DVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 30 ~l~~~F~~fG~V~~v~i 46 (60)
+|-+.|.+||+|.=|++
T Consensus 52 ~ll~~~~~~GevvLvRf 68 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRF 68 (146)
T ss_dssp HHHHHHHCCS-ECEEEE
T ss_pred HHHHHHHhCCceEEEEE
Confidence 78889999999865443
No 190
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=24.73 E-value=71 Score=19.84 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHhcCCcee
Q psy7530 25 PTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 25 ~~~e~~l~~~F~~fG~V~ 42 (60)
..+.+.++.+..+||+|-
T Consensus 95 ~~t~e~~~~LL~~yGPLw 112 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLW 112 (166)
T ss_pred ccCHHHHHHHHHHcCCeE
Confidence 778999999999999973
No 191
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=24.48 E-value=40 Score=13.41 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=6.3
Q ss_pred ecCCCCccc
Q psy7530 50 IFGISPVKN 58 (60)
Q Consensus 50 ~~g~~~~k~ 58 (60)
..||++++|
T Consensus 5 p~gftpfrg 13 (19)
T PF06753_consen 5 PPGFTPFRG 13 (19)
T ss_pred CCCCCcccc
Confidence 467887775
No 192
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=24.27 E-value=35 Score=20.36 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=16.2
Q ss_pred EeCCCCCCCHHH---HHHHHhcCCce
Q psy7530 19 VGGLSAPTTLED---VKNYFEQFGPV 41 (60)
Q Consensus 19 Vg~L~~~~~e~~---l~~~F~~fG~V 41 (60)
+..||...+.++ +.++|..||.-
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH 78 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTH 78 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcE
Confidence 456888888887 78899999985
No 193
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=24.01 E-value=67 Score=18.66 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=14.9
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+++.+.+++++.|.+
T Consensus 70 ILGv~~~As~~eIkkaYRr 88 (116)
T PTZ00100 70 ILNISPTASKERIREAHKQ 88 (116)
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 4568888999999887764
No 194
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.95 E-value=64 Score=18.23 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=18.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcC--CceeEEE
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQF--GPVYYTA 45 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~f--G~V~~v~ 45 (60)
.-+|||+++..+.+.--...-+.+ |.+.-+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~ 60 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAW 60 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 458999999888775333333322 5554333
No 195
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.71 E-value=1e+02 Score=18.38 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=19.5
Q ss_pred CCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 21 GLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 21 ~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
-||+-++ .|.+||+.=|+|.+|....
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvt 35 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVT 35 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEe
Confidence 3676653 5899999999998875443
No 196
>KOG1271|consensus
Probab=23.45 E-value=1.4e+02 Score=19.33 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHhcCCceeEEEEeeeecCCC
Q psy7530 23 SAPTTLEDVKNYFEQFGPVYYTACDRFIFGIS 54 (60)
Q Consensus 23 ~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~ 54 (60)
+.+.|.++|-+.|+.+|-+.-..|..-.|-|+
T Consensus 181 SCN~T~dELv~~f~~~~f~~~~tvp~ptF~Fg 212 (227)
T KOG1271|consen 181 SCNFTKDELVEEFENFNFEYLSTVPTPTFMFG 212 (227)
T ss_pred ecCccHHHHHHHHhcCCeEEEEeeccceEEec
Confidence 67889999999999999665555554334333
No 197
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=22.97 E-value=30 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=19.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG 39 (60)
..=+.+|+++.+.-.+.++++|+.+-
T Consensus 20 ~~l~i~Gd~~~~~~~~~i~~~~~~l~ 45 (184)
T PF05193_consen 20 MTLVIVGDIDPDELEKLIEKYFGSLP 45 (184)
T ss_dssp EEEEEEESSGHHHHHHHHHHHHTTSS
T ss_pred eEEEEEcCccHHHHHHHHHhhhhhhc
Confidence 44577888988877778888887774
No 198
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=22.95 E-value=62 Score=19.38 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHhcC
Q psy7530 21 GLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 21 ~L~~~~~e~~l~~~F~~f 38 (60)
.+++..++++|+++|+..
T Consensus 25 ~~~~~~~~e~Lremfa~L 42 (186)
T PF14337_consen 25 AASYEIDDEELREMFANL 42 (186)
T ss_pred hccCcCCcHHHHHHHHHH
Confidence 367778899999998753
No 199
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=22.77 E-value=1.2e+02 Score=19.88 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=20.0
Q ss_pred ceEEEeCC-CCCCCHHHHHHHHhcC
Q psy7530 15 KKIFVGGL-SAPTTLEDVKNYFEQF 38 (60)
Q Consensus 15 ~klfVg~L-~~~~~e~~l~~~F~~f 38 (60)
+-+|.|+. |+..+-+|+|+..++|
T Consensus 212 kv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 212 KVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred EEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 34788887 7889999999998876
No 200
>KOG4307|consensus
Probab=22.65 E-value=1.4e+02 Score=22.97 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=25.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeE
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~ 43 (60)
.+-|-+-|.|++++-+|+-++|.-|-.+-+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~ 896 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPN 896 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCC
Confidence 346888999999999999999999966544
No 201
>PRK14595 peptide deformylase; Provisional
Probab=22.54 E-value=89 Score=19.01 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhc
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~ 37 (60)
...||+=.|+...++++++++|.+
T Consensus 138 ~G~lf~Drl~~~~~~~~~~~~~~~ 161 (162)
T PRK14595 138 NGIPFTERADRILTDKEVEAYFIN 161 (162)
T ss_pred CCEEEeeecCccccchHHHHhhhc
Confidence 457999999999999999999864
No 202
>COG2118 DNA-binding protein [General function prediction only]
Probab=22.45 E-value=87 Score=18.33 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.0
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
.|++...+++++|.+..++-
T Consensus 82 tGri~~~I~e~~lk~IL~~i 101 (116)
T COG2118 82 TGRITHKIDEEELKEILERI 101 (116)
T ss_pred cCCCCCCCCHHHHHHHHHHH
Confidence 37889999999999988764
No 203
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.23 E-value=78 Score=15.25 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHhcCCc
Q psy7530 25 PTTLEDVKNYFEQFGP 40 (60)
Q Consensus 25 ~~~e~~l~~~F~~fG~ 40 (60)
..++++|++...+||.
T Consensus 5 ~LSd~eL~~~L~~~G~ 20 (44)
T smart00540 5 RLSDAELRAELKQYGL 20 (44)
T ss_pred HcCHHHHHHHHHHcCC
Confidence 4578899999999975
No 204
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=22.12 E-value=37 Score=18.33 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=11.1
Q ss_pred CCHHHHHHHHhcCCc
Q psy7530 26 TTLEDVKNYFEQFGP 40 (60)
Q Consensus 26 ~~e~~l~~~F~~fG~ 40 (60)
++..+|..+|+|.|-
T Consensus 3 ~~~h~l~~LF~QLGL 17 (74)
T PF10982_consen 3 TTQHTLSNLFAQLGL 17 (74)
T ss_dssp TT-THHHHHHHHHTS
T ss_pred CCCCCHHHHHHHhCC
Confidence 456678999999884
No 205
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=21.91 E-value=1.3e+02 Score=17.28 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=12.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHH
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYF 35 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F 35 (60)
.+.+++|.|| +.+|++++.
T Consensus 64 g~~i~~g~lP---t~~eVe~Fl 82 (105)
T PF09702_consen 64 GNYIIVGYLP---TDEEVEDFL 82 (105)
T ss_pred CCEEecCCCC---ChHHHHHHH
Confidence 3678999998 445665543
No 206
>KOG0739|consensus
Probab=21.82 E-value=71 Score=22.33 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHH
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYF 35 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F 35 (60)
..-+|.+|..|...|++|++++=
T Consensus 306 ~MF~lhlG~tp~~LT~~d~~eL~ 328 (439)
T KOG0739|consen 306 RMFKLHLGDTPHVLTEQDFKELA 328 (439)
T ss_pred hhheeccCCCccccchhhHHHHH
Confidence 45579999999999999999763
No 207
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=21.36 E-value=47 Score=20.27 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=10.2
Q ss_pred HHHHhcCCceeEE
Q psy7530 32 KNYFEQFGPVYYT 44 (60)
Q Consensus 32 ~~~F~~fG~V~~v 44 (60)
.+.|.+||.|.+.
T Consensus 11 ~eaFaPfG~VI~~ 23 (162)
T PRK03606 11 KEAFAPFGDVIET 23 (162)
T ss_pred HHHcCccccEEcc
Confidence 3489999999654
No 208
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=21.25 E-value=2.3e+02 Score=18.68 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=26.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
.+-+.-||....++-++++|++.|--..+.-.
T Consensus 120 ~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~ 151 (245)
T PF12623_consen 120 EVRLPALPCRGGEELVRRLFEPLGWTVTAEPV 151 (245)
T ss_pred EEEeeeeecCCcHHHHHHhhcCcCceEEeEec
Confidence 46778899999999999999999976555433
No 209
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=20.93 E-value=81 Score=17.43 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=21.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcC----CceeEEEEeeeecCC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQF----GPVYYTACDRFIFGI 53 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~f----G~V~~v~i~~~~~g~ 53 (60)
.-+|||+++..+.+. |=+...++ |.+.-+.-..+..||
T Consensus 26 ~GVyVg~~s~rVRe~-lW~~v~~~~~~~G~avm~~~~~~e~G~ 67 (87)
T TIGR01873 26 AGVYVGGVSASVRER-IWDYLAQHCPPKGSLVITWSSNTCPGF 67 (87)
T ss_pred CCcEEcCCCHHHHHH-HHHHHHHhCCCCccEEEEEeCCCCCCc
Confidence 458999999887774 33333333 665433333333444
No 210
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=85 Score=21.80 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.5
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
|.+++.++++++|+.+|.+.
T Consensus 9 iLGV~k~As~~EIKkAYRkL 28 (371)
T COG0484 9 ILGVSKDASEEEIKKAYRKL 28 (371)
T ss_pred hcCCCCCCCHHHHHHHHHHH
Confidence 46789999999999987653
No 211
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=20.55 E-value=2.1e+02 Score=17.18 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=27.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGIS 54 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~ 54 (60)
-+++-+-.+...+++|+..+.+.|.. +.+.| +.|++
T Consensus 88 Div~lG~D~~~d~~~l~~~~~k~G~~--~~v~R-~~g~~ 123 (140)
T COG0615 88 DIVVLGDDQKFDEDDLKYELVKRGLF--VEVKR-TEGVS 123 (140)
T ss_pred CEEEECCCCcCChHHHHHHHHHcCCe--eEEEe-ccCcc
Confidence 46777777778999999999999988 55566 45543
No 212
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=20.51 E-value=1.4e+02 Score=18.95 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=18.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG 39 (60)
.+.|+|+|+.++.+.+..+.. ++
T Consensus 93 d~Vv~NlPy~i~s~~~~~l~~-~~ 115 (258)
T PRK14896 93 NKVVSNLPYQISSPITFKLLK-HG 115 (258)
T ss_pred eEEEEcCCcccCcHHHHHHHh-hc
Confidence 478999999998877777665 54
No 213
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.38 E-value=1.5e+02 Score=19.62 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=22.2
Q ss_pred cceEEEeC--CCCCC-CHHHHHHHHhcC-CceeEE
Q psy7530 14 TKKIFVGG--LSAPT-TLEDVKNYFEQF-GPVYYT 44 (60)
Q Consensus 14 ~~klfVg~--L~~~~-~e~~l~~~F~~f-G~V~~v 44 (60)
..|.|+.- |-.++ ++++|++...+| |+|.++
T Consensus 75 ~~K~Y~a~~~lG~~t~~~e~i~~~l~~F~G~I~Q~ 109 (271)
T COG0130 75 ADKEYVATVRLGDQTDSEEEVRAALEAFTGEIYQI 109 (271)
T ss_pred CCcEEEEEEEeCCcCCCHHHHHHHHHhcceeeEec
Confidence 34555554 34555 899999999999 888654
No 214
>PF03545 YopE: Yersinia virulence determinant (YopE); InterPro: IPR014773 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens, such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. Exotoxins secreted by the type III system do not possess a secretion signal, and are considered unique for this reason []. Yersinia secrete a Rho GTPase-activating protein, YopE [, ], that disrupts the host cell actin cytoskeleton. YopE is regulated by another bacterial gene, SycE [], that enables the exotoxin to remain soluble in the bacterial cytoplasm. A similar protein, exoenzyme S from Pseudomonas aeruginosa, has both ADP-ribosylation and GTPase activity [, ].; PDB: 1HY5_B 1G4W_R 1G4U_S 1R4T_A 1HE1_A 1HE9_A.
Probab=20.23 E-value=48 Score=17.74 Aligned_cols=7 Identities=43% Similarity=0.961 Sum_probs=5.6
Q ss_pred HhcCCce
Q psy7530 35 FEQFGPV 41 (60)
Q Consensus 35 F~~fG~V 41 (60)
|+|||++
T Consensus 53 fsQwGT~ 59 (70)
T PF03545_consen 53 FSQWGTT 59 (70)
T ss_dssp GGGCTSS
T ss_pred HHHhhcc
Confidence 7888875
No 215
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=20.07 E-value=54 Score=20.23 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=9.9
Q ss_pred HHHhcCCceeEE
Q psy7530 33 NYFEQFGPVYYT 44 (60)
Q Consensus 33 ~~F~~fG~V~~v 44 (60)
+.|..||.|.+.
T Consensus 12 eaFaPfG~VI~~ 23 (171)
T PRK13395 12 EAFAPFGDVIEL 23 (171)
T ss_pred HHcCccceeEec
Confidence 489999999664
No 216
>PRK14288 chaperone protein DnaJ; Provisional
Probab=20.05 E-value=83 Score=21.34 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=15.9
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
|-++++++++++|+..|-+.
T Consensus 8 vLgv~~~As~~eIkkayrkl 27 (369)
T PRK14288 8 ILEVEKHSNQETIKKSYRKL 27 (369)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45788999999999888654
Done!