Query psy7530
Match_columns 60
No_of_seqs 103 out of 1079
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 20:44:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sjq_A Polypyrimidine tract-bi 99.5 1.3E-14 4.4E-19 81.9 4.3 43 11-60 13-55 (105)
2 4fxv_A ELAV-like protein 1; RN 99.5 3.9E-14 1.3E-18 78.1 5.8 47 13-60 18-64 (99)
3 1s79_A Lupus LA protein; RRM, 99.5 4.4E-14 1.5E-18 78.6 5.7 48 11-60 8-55 (103)
4 3d2w_A TAR DNA-binding protein 99.5 3.1E-14 1.1E-18 77.1 4.8 41 9-49 6-46 (89)
5 3s7r_A Heterogeneous nuclear r 99.5 1.2E-13 4.1E-18 73.5 5.7 53 7-60 4-56 (87)
6 2ad9_A Polypyrimidine tract-bi 99.5 1E-13 3.5E-18 79.6 5.7 38 11-48 28-65 (119)
7 2cq1_A PTB-like protein L; RRM 99.5 1.3E-13 4.4E-18 76.8 5.6 38 11-48 12-49 (101)
8 1wex_A Hypothetical protein (r 99.4 2.2E-13 7.4E-18 76.1 6.2 38 11-48 12-49 (104)
9 4f25_A Polyadenylate-binding p 99.4 9.5E-14 3.3E-18 77.9 4.5 45 13-60 4-48 (115)
10 1x4d_A Matrin 3; structural ge 99.4 1E-13 3.5E-18 77.6 4.3 37 12-48 13-50 (102)
11 2ytc_A PRE-mRNA-splicing facto 99.4 3.1E-13 1.1E-17 71.5 5.9 41 8-48 6-46 (85)
12 3r27_A HnRNP L, heterogeneous 99.4 2.7E-13 9.4E-18 75.9 5.3 44 10-60 17-60 (100)
13 3s8s_A Histone-lysine N-methyl 99.4 3.4E-13 1.2E-17 75.7 5.7 48 12-60 4-51 (110)
14 2lxi_A RNA-binding protein 10; 99.4 7.1E-14 2.4E-18 75.9 2.1 46 14-60 1-47 (91)
15 2cqg_A TDP-43, TAR DNA-binding 99.4 8.7E-13 3E-17 72.1 6.3 52 8-60 9-60 (103)
16 1wf0_A TDP-43, TAR DNA-binding 99.4 5.3E-13 1.8E-17 71.3 5.2 38 12-49 3-40 (88)
17 2lkz_A RNA-binding protein 5; 99.4 2.8E-13 9.7E-18 74.6 4.2 49 11-60 6-56 (95)
18 2dgs_A DAZ-associated protein 99.4 1E-12 3.6E-17 71.4 6.2 51 9-60 5-55 (99)
19 2jrs_A RNA-binding protein 39; 99.4 1E-12 3.5E-17 73.2 6.1 46 4-49 16-61 (108)
20 2rs2_A Musashi-1, RNA-binding 99.4 7.9E-13 2.7E-17 73.6 5.6 51 9-60 20-70 (109)
21 2cqd_A RNA-binding region cont 99.4 1.6E-12 5.6E-17 72.4 6.9 52 8-60 11-62 (116)
22 1x4h_A RNA-binding protein 28; 99.4 1.3E-12 4.6E-17 72.0 6.4 52 8-60 9-60 (111)
23 2cph_A RNA binding motif prote 99.4 1.4E-12 4.9E-17 71.5 6.4 53 8-60 9-61 (107)
24 2m2b_A RNA-binding protein 10; 99.4 4E-13 1.4E-17 76.7 4.3 50 10-60 19-70 (131)
25 1x5u_A Splicing factor 3B subu 99.4 2E-12 6.8E-17 70.8 7.0 52 8-60 9-60 (105)
26 2cpj_A Non-POU domain-containi 99.4 9.3E-13 3.2E-17 71.7 5.6 40 9-48 10-49 (99)
27 2dnm_A SRP46 splicing factor; 99.4 1.9E-12 6.3E-17 70.8 6.7 52 8-60 7-58 (103)
28 2dgp_A Bruno-like 4, RNA bindi 99.4 7.2E-13 2.5E-17 72.7 5.0 52 8-60 7-58 (106)
29 1x4f_A Matrin 3; structural ge 99.4 3E-13 1E-17 76.9 3.6 42 12-60 23-65 (112)
30 2cq3_A RNA-binding protein 9; 99.4 1.8E-12 6.1E-17 70.9 6.5 50 8-60 9-58 (103)
31 4f02_A Polyadenylate-binding p 99.4 6.2E-13 2.1E-17 80.6 5.1 49 11-60 12-60 (213)
32 2div_A TRNA selenocysteine ass 99.4 1.1E-12 3.8E-17 71.2 5.5 39 10-48 5-44 (99)
33 2xs2_A Deleted in azoospermia- 99.4 6.1E-13 2.1E-17 72.6 4.3 50 9-60 4-53 (102)
34 2dnh_A Bruno-like 5, RNA bindi 99.4 2E-12 6.9E-17 70.7 6.4 48 11-60 12-59 (105)
35 2e5h_A Zinc finger CCHC-type a 99.4 2.5E-12 8.4E-17 69.1 6.6 51 9-60 11-61 (94)
36 2dh8_A DAZ-associated protein 99.4 1.2E-12 4.2E-17 71.7 5.5 41 9-49 11-51 (105)
37 2la4_A Nuclear and cytoplasmic 99.4 1.2E-12 4.2E-17 71.3 5.4 37 12-48 25-61 (101)
38 2mss_A Protein (musashi1); RNA 99.4 6.4E-13 2.2E-17 69.0 4.1 44 16-60 1-44 (75)
39 2khc_A Testis-specific RNP-typ 99.4 1.9E-12 6.5E-17 72.2 6.2 49 11-60 37-85 (118)
40 2cpf_A RNA binding motif prote 99.4 1.2E-12 4.2E-17 70.9 5.2 49 12-60 3-53 (98)
41 2cpz_A CUG triplet repeat RNA- 99.4 1.7E-12 6E-17 72.2 5.9 40 10-49 21-60 (115)
42 2la6_A RNA-binding protein FUS 99.4 2.5E-12 8.6E-17 69.9 6.3 53 7-60 6-66 (99)
43 1uaw_A Mouse-musashi-1; RNP-ty 99.4 7.3E-13 2.5E-17 68.8 4.0 45 15-60 1-45 (77)
44 2dgo_A Cytotoxic granule-assoc 99.3 2.5E-12 8.4E-17 71.5 6.2 42 7-48 8-49 (115)
45 2cq4_A RNA binding motif prote 99.3 1.6E-12 5.5E-17 72.3 5.4 47 13-60 24-70 (114)
46 2cqi_A Nucleolysin TIAR; RNA r 99.3 2.2E-12 7.4E-17 70.5 5.8 50 8-60 9-58 (103)
47 1x4b_A Heterogeneous nuclear r 99.3 1.2E-12 3.9E-17 73.0 4.7 47 13-60 26-72 (116)
48 1p27_B RNA-binding protein 8A; 99.3 2.2E-12 7.4E-17 70.7 5.7 48 12-60 21-68 (106)
49 1x4e_A RNA binding motif, sing 99.3 1.4E-12 4.9E-17 69.0 4.8 48 12-60 3-50 (85)
50 2ywk_A Putative RNA-binding pr 99.3 1.6E-12 5.4E-17 70.0 5.0 50 9-60 11-60 (95)
51 2cqc_A Arginine/serine-rich sp 99.3 3.5E-12 1.2E-16 68.5 6.3 40 9-48 10-49 (95)
52 1whw_A Hypothetical protein ri 99.3 2.4E-12 8.1E-17 69.8 5.6 49 11-60 5-53 (99)
53 1l3k_A Heterogeneous nuclear r 99.3 1.6E-12 5.3E-17 76.6 5.3 53 7-60 6-58 (196)
54 3bs9_A Nucleolysin TIA-1 isofo 99.3 1.8E-12 6.1E-17 68.7 4.9 37 12-48 4-40 (87)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.3 2E-12 6.9E-17 68.2 5.1 39 11-49 4-42 (85)
56 2err_A Ataxin-2-binding protei 99.3 1.8E-12 6.3E-17 72.0 5.0 50 8-60 23-72 (109)
57 1why_A Hypothetical protein ri 99.3 2.7E-12 9.4E-17 69.6 5.5 37 12-48 15-51 (97)
58 1wg5_A Heterogeneous nuclear r 99.3 3.7E-12 1.3E-16 70.2 6.1 49 10-60 11-60 (104)
59 2cqb_A Peptidyl-prolyl CIS-tra 99.3 2.2E-12 7.6E-17 70.3 5.1 51 9-60 7-57 (102)
60 2d9p_A Polyadenylate-binding p 99.3 2.9E-12 9.8E-17 70.0 5.5 41 9-49 10-50 (103)
61 3md1_A Nuclear and cytoplasmic 99.3 2.4E-12 8E-17 67.7 5.0 45 15-60 2-46 (83)
62 2do4_A Squamous cell carcinoma 99.3 4.2E-12 1.4E-16 69.1 6.1 48 11-60 14-61 (100)
63 2dnz_A Probable RNA-binding pr 99.3 4.8E-12 1.6E-16 68.0 6.2 48 12-60 3-50 (95)
64 1whx_A Hypothetical protein ri 99.3 1.9E-12 6.4E-17 72.4 4.7 36 13-48 9-44 (111)
65 2cq0_A Eukaryotic translation 99.3 2.3E-12 8E-17 70.4 5.0 40 9-48 10-49 (103)
66 1iqt_A AUF1, heterogeneous nuc 99.3 8.7E-13 3E-17 68.4 3.0 44 16-60 1-44 (75)
67 1oo0_B CG8781-PA, drosophila Y 99.3 3.8E-12 1.3E-16 70.2 5.7 49 11-60 23-71 (110)
68 3ucg_A Polyadenylate-binding p 99.3 3.9E-12 1.3E-16 67.6 5.4 47 13-60 5-51 (89)
69 2cq2_A Hypothetical protein LO 99.3 1.2E-12 4E-17 74.8 3.4 37 12-48 23-61 (114)
70 2dhg_A TRNA selenocysteine ass 99.3 4E-12 1.4E-16 69.4 5.5 48 11-60 6-54 (104)
71 1x5s_A Cold-inducible RNA-bind 99.3 4.3E-12 1.5E-16 69.1 5.5 40 9-48 7-46 (102)
72 2dgx_A KIAA0430 protein; RRM d 99.3 3.3E-12 1.1E-16 69.4 5.0 40 10-49 5-48 (96)
73 1wi8_A EIF-4B, eukaryotic tran 99.3 6.1E-12 2.1E-16 68.9 6.1 50 10-60 11-60 (104)
74 2x1f_A MRNA 3'-END-processing 99.3 4.1E-12 1.4E-16 68.7 5.3 46 14-60 2-47 (96)
75 3p5t_L Cleavage and polyadenyl 99.3 1.6E-12 5.5E-17 69.9 3.6 45 15-60 2-48 (90)
76 1p1t_A Cleavage stimulation fa 99.3 1.6E-12 5.6E-17 70.9 3.6 38 11-48 5-42 (104)
77 2dng_A Eukaryotic translation 99.3 6.7E-12 2.3E-16 68.6 6.1 51 8-60 9-59 (103)
78 2wbr_A GW182, gawky, LD47780P; 99.3 1.5E-12 5.1E-17 71.9 3.4 41 13-60 6-46 (89)
79 2dgv_A HnRNP M, heterogeneous 99.3 6.4E-12 2.2E-16 67.2 5.8 39 10-48 4-42 (92)
80 3ns6_A Eukaryotic translation 99.3 1.3E-12 4.4E-17 71.7 3.0 47 13-60 5-57 (100)
81 4a8x_A RNA-binding protein wit 99.3 3.1E-12 1.1E-16 67.8 4.3 36 13-48 3-38 (88)
82 2dnl_A Cytoplasmic polyadenyla 99.3 3.2E-12 1.1E-16 71.4 4.5 48 12-60 6-55 (114)
83 1u6f_A Tcubp1, RNA-binding pro 99.3 5E-12 1.7E-16 72.2 5.3 49 11-60 39-87 (139)
84 2fy1_A RNA-binding motif prote 99.3 5.7E-12 1.9E-16 70.9 5.4 47 12-60 5-51 (116)
85 2nlw_A Eukaryotic translation 99.3 5.5E-12 1.9E-16 69.6 5.2 47 11-60 12-64 (105)
86 2cjk_A Nuclear polyadenylated 99.3 5.2E-12 1.8E-16 72.8 5.3 47 13-60 2-48 (167)
87 2dis_A Unnamed protein product 99.3 3.3E-12 1.1E-16 70.3 4.2 49 12-60 6-55 (109)
88 2cpy_A RNA-binding protein 12; 99.3 5.6E-12 1.9E-16 70.4 5.1 49 10-60 11-60 (114)
89 1x5o_A RNA binding motif, sing 99.3 7.2E-12 2.5E-16 69.5 5.5 48 11-60 22-69 (114)
90 3n9u_C Cleavage and polyadenyl 99.3 4.8E-12 1.6E-16 74.7 5.0 47 13-60 54-102 (156)
91 1x5t_A Splicing factor 3B subu 99.3 4.2E-12 1.4E-16 68.4 4.4 48 12-60 3-51 (96)
92 1x4g_A Nucleolysin TIAR; struc 99.3 4.4E-12 1.5E-16 70.1 4.6 38 11-48 22-59 (109)
93 2do0_A HnRNP M, heterogeneous 99.3 8.8E-12 3E-16 69.0 5.7 49 10-60 11-59 (114)
94 2jvr_A Nucleolar protein 3; RN 99.3 2.7E-12 9.2E-17 72.5 3.6 40 8-47 22-62 (111)
95 3ex7_B RNA-binding protein 8A; 99.3 1E-11 3.5E-16 69.9 6.0 50 10-60 18-67 (126)
96 2krb_A Eukaryotic translation 99.3 4.9E-12 1.7E-16 66.7 4.3 43 15-60 2-50 (81)
97 2kn4_A Immunoglobulin G-bindin 99.3 8.3E-12 2.8E-16 72.4 5.7 48 12-60 68-115 (158)
98 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.2E-11 4.2E-16 70.2 6.3 49 11-60 60-108 (140)
99 3ulh_A THO complex subunit 4; 99.3 8.3E-12 2.8E-16 68.5 5.4 48 11-60 26-73 (107)
100 1x4c_A Splicing factor, argini 99.3 8.2E-12 2.8E-16 69.1 5.4 40 10-49 11-50 (108)
101 2lea_A Serine/arginine-rich sp 99.3 8.4E-12 2.9E-16 71.9 5.4 52 8-60 41-92 (135)
102 2kxn_B Transformer-2 protein h 99.3 9.5E-12 3.2E-16 71.3 5.6 49 11-60 43-91 (129)
103 2j8a_A Histone-lysine N-methyl 99.3 5.6E-12 1.9E-16 74.1 4.7 45 15-60 3-51 (136)
104 2db1_A Heterogeneous nuclear r 99.3 6.2E-12 2.1E-16 70.9 4.7 48 11-60 14-64 (118)
105 2hgl_A HNRPF protein, heteroge 99.3 4.5E-12 1.6E-16 73.8 4.2 48 11-60 41-91 (136)
106 2i2y_A Fusion protein consists 99.3 5.9E-12 2E-16 72.9 4.6 40 10-49 69-108 (150)
107 1x4a_A Splicing factor, argini 99.3 1.7E-11 5.7E-16 67.6 6.2 39 10-48 18-56 (109)
108 2dnq_A RNA-binding protein 4B; 99.3 1.2E-11 4.1E-16 66.2 5.4 38 11-48 5-42 (90)
109 2j76_E EIF-4B, EIF4B, eukaryot 99.3 2.3E-12 7.9E-17 70.5 2.7 50 10-60 15-64 (100)
110 2lmi_A GRSF-1, G-rich sequence 99.3 3.2E-12 1.1E-16 70.8 3.1 50 9-60 6-58 (107)
111 3nmr_A Cugbp ELAV-like family 99.3 9.6E-12 3.3E-16 71.8 5.2 48 13-60 2-50 (175)
112 2jwn_A Embryonic polyadenylate 99.2 8.5E-12 2.9E-16 70.0 4.8 47 13-60 35-81 (124)
113 2ki2_A SS-DNA binding protein 99.2 1.6E-12 5.5E-17 69.4 1.6 45 15-60 2-46 (90)
114 1h2v_Z 20 kDa nuclear CAP bind 99.2 1.4E-11 4.9E-16 71.6 5.7 37 12-48 37-73 (156)
115 2kt5_A RNA and export factor-b 99.2 2.6E-11 9E-16 68.2 6.4 47 12-60 33-79 (124)
116 2dnn_A RNA-binding protein 12; 99.2 7.3E-12 2.5E-16 70.4 4.0 46 12-60 14-59 (109)
117 2cpe_A RNA-binding protein EWS 99.2 1.4E-11 4.7E-16 68.2 4.9 50 10-60 11-68 (113)
118 2hgn_A Heterogeneous nuclear r 99.2 8.4E-12 2.9E-16 72.9 4.2 47 11-60 43-89 (139)
119 2hzc_A Splicing factor U2AF 65 99.2 1.1E-11 3.7E-16 65.6 4.3 37 12-48 4-51 (87)
120 2hvz_A Splicing factor, argini 99.2 8.5E-12 2.9E-16 67.9 3.8 35 15-49 1-35 (101)
121 3q2s_C Cleavage and polyadenyl 99.2 1.5E-11 5E-16 76.3 5.3 47 13-60 67-115 (229)
122 2dgt_A RNA-binding protein 30; 99.2 2.7E-11 9.2E-16 65.0 5.6 40 9-48 5-44 (92)
123 1wf1_A RNA-binding protein RAL 99.2 2.3E-11 8E-16 67.2 5.5 37 12-48 25-62 (110)
124 2ek1_A RNA-binding protein 12; 99.2 4.6E-12 1.6E-16 68.1 2.4 38 11-48 12-49 (95)
125 3lqv_A PRE-mRNA branch site pr 99.2 2.9E-11 9.9E-16 67.1 5.7 37 12-48 6-42 (115)
126 2hgm_A HNRPF protein, heteroge 99.2 2E-11 6.8E-16 70.4 5.2 47 11-60 39-87 (126)
127 2cqp_A RNA-binding protein 12; 99.2 8.1E-12 2.8E-16 67.6 3.3 39 10-48 11-49 (98)
128 1wez_A HnRNP H', FTP-3, hetero 99.2 1.2E-11 4.2E-16 68.3 4.1 48 10-60 11-58 (102)
129 1rk8_A CG8781-PA, CG8781-PA pr 99.2 2.2E-11 7.5E-16 71.7 5.4 37 12-48 70-106 (165)
130 2cqh_A IGF-II mRNA-binding pro 99.2 1.2E-11 4.2E-16 66.4 3.7 38 10-47 4-42 (93)
131 2jvo_A Nucleolar protein 3; nu 99.2 2.3E-11 7.9E-16 67.7 4.9 40 9-48 26-65 (108)
132 1nu4_A U1A RNA binding domain; 99.2 1.8E-11 6.1E-16 66.0 4.3 38 11-48 5-46 (97)
133 2dha_A FLJ20171 protein; RRM d 99.2 1.6E-11 5.4E-16 70.4 4.2 47 12-60 21-71 (123)
134 2cpi_A CCR4-NOT transcription 99.2 1.5E-11 5.1E-16 68.4 3.8 38 11-48 12-52 (111)
135 2dgu_A Heterogeneous nuclear r 99.2 2.5E-11 8.5E-16 66.4 4.5 38 11-48 8-45 (103)
136 2dnp_A RNA-binding protein 14; 99.2 3.7E-11 1.3E-15 64.3 5.0 39 10-48 5-43 (90)
137 1fxl_A Paraneoplastic encephal 99.2 4.3E-11 1.5E-15 68.5 5.5 35 14-48 2-36 (167)
138 1wel_A RNA-binding protein 12; 99.2 1.3E-11 4.3E-16 69.7 3.1 48 12-60 23-70 (124)
139 2a3j_A U1 small nuclear ribonu 99.2 4.7E-11 1.6E-15 68.7 5.5 45 12-60 27-75 (127)
140 1b7f_A Protein (SXL-lethal pro 99.2 3.7E-11 1.3E-15 69.1 5.0 36 14-49 3-38 (168)
141 2dgw_A Probable RNA-binding pr 99.2 6.8E-11 2.3E-15 63.2 5.6 48 10-60 6-53 (91)
142 2e5g_A U6 snRNA-specific termi 99.2 9.4E-11 3.2E-15 63.2 6.2 35 10-44 4-38 (94)
143 3beg_B Splicing factor, argini 99.2 1.7E-11 5.8E-16 68.7 3.1 38 12-49 14-51 (115)
144 2kvi_A Nuclear polyadenylated 99.2 3E-11 1E-15 65.5 3.9 38 11-48 7-45 (96)
145 1wg1_A KIAA1579 protein, homol 99.1 3.4E-11 1.2E-15 64.3 3.8 35 13-48 4-38 (88)
146 2e5j_A Methenyltetrahydrofolat 99.1 9.4E-11 3.2E-15 63.5 5.6 37 11-48 16-52 (97)
147 2cpd_A Apobec-1 stimulating pr 99.1 1.3E-10 4.5E-15 63.0 6.0 40 9-48 10-51 (99)
148 3sde_A Paraspeckle component 1 99.1 5.3E-11 1.8E-15 74.0 4.8 42 12-60 20-61 (261)
149 3md3_A Nuclear and cytoplasmic 99.1 3.1E-11 1.1E-15 69.0 3.5 44 15-60 1-44 (166)
150 1x5p_A Negative elongation fac 99.1 1.4E-10 4.8E-15 62.8 5.9 36 11-48 12-47 (97)
151 2cpx_A Hypothetical protein FL 99.1 1.5E-11 5.1E-16 68.2 2.0 33 12-44 23-55 (115)
152 2e44_A Insulin-like growth fac 99.1 7.5E-11 2.6E-15 63.5 4.6 37 12-48 13-50 (96)
153 2voo_A Lupus LA protein; RNA-b 99.1 7.7E-11 2.6E-15 71.4 4.8 45 14-60 109-153 (193)
154 2f3j_A RNA and export factor b 99.1 1.1E-10 3.8E-15 69.9 5.4 47 12-60 86-132 (177)
155 2lcw_A RNA-binding protein FUS 98.7 6.8E-12 2.3E-16 70.0 0.0 38 11-48 4-49 (116)
156 2xnq_A Nuclear polyadenylated 99.1 9.9E-11 3.4E-15 63.9 4.6 39 10-48 18-57 (97)
157 1l3k_A Heterogeneous nuclear r 99.1 1.4E-10 4.7E-15 68.2 5.4 47 13-60 103-149 (196)
158 2qfj_A FBP-interacting repress 99.1 1.2E-10 4.1E-15 69.3 5.2 36 13-48 27-62 (216)
159 2e5i_A Heterogeneous nuclear r 99.1 1.9E-10 6.4E-15 66.2 5.7 36 13-48 24-59 (124)
160 1fj7_A Nucleolin RBD1, protein 99.1 1.6E-11 5.3E-16 66.9 1.0 32 12-43 15-46 (101)
161 3u1l_A PRE-mRNA-splicing facto 99.1 5.8E-11 2E-15 74.9 3.7 43 11-60 131-182 (240)
162 3nmr_A Cugbp ELAV-like family 99.1 1.6E-10 5.3E-15 66.7 5.2 46 13-60 94-139 (175)
163 1fjc_A Nucleolin RBD2, protein 99.1 6.3E-11 2.1E-15 63.8 3.0 36 9-44 11-46 (96)
164 2fc9_A NCL protein; structure 99.1 2.3E-10 7.8E-15 62.2 5.2 36 10-48 11-46 (101)
165 2g4b_A Splicing factor U2AF 65 99.1 3.2E-10 1.1E-14 65.4 6.1 38 12-49 92-129 (172)
166 3md3_A Nuclear and cytoplasmic 99.1 3.5E-10 1.2E-14 64.6 6.1 38 11-48 84-121 (166)
167 4f02_A Polyadenylate-binding p 99.1 1.5E-10 5E-15 70.1 4.6 45 13-60 102-146 (213)
168 2adc_A Polypyrimidine tract-bi 99.1 2.2E-10 7.6E-15 69.9 5.5 42 9-50 29-71 (229)
169 3tyt_A Heterogeneous nuclear r 99.1 2.8E-10 9.5E-15 69.3 5.5 37 13-49 3-40 (205)
170 2ghp_A U4/U6 snRNA-associated 99.0 1.7E-10 5.7E-15 72.0 4.1 48 10-60 37-84 (292)
171 3pgw_S U1-70K; protein-RNA com 99.0 4.1E-10 1.4E-14 75.3 6.1 37 13-49 101-137 (437)
172 1sjr_A Polypyrimidine tract-bi 99.0 2.6E-10 9E-15 68.6 4.6 38 11-48 43-80 (164)
173 2cjk_A Nuclear polyadenylated 99.0 1.8E-10 6E-15 66.3 3.7 47 13-60 86-132 (167)
174 3zzy_A Polypyrimidine tract-bi 99.0 5.4E-10 1.8E-14 65.0 5.3 37 12-48 26-62 (130)
175 3pgw_A U1-A; protein-RNA compl 99.0 5.7E-10 2E-14 69.2 5.7 46 11-60 6-55 (282)
176 2yh0_A Splicing factor U2AF 65 99.0 7.9E-10 2.7E-14 65.0 6.0 38 12-49 112-149 (198)
177 3tht_A Alkylated DNA repair pr 99.0 3.6E-10 1.2E-14 74.2 4.9 44 10-60 14-59 (345)
178 1fxl_A Paraneoplastic encephal 99.0 8.9E-10 3E-14 62.9 5.7 37 12-48 86-122 (167)
179 1b7f_A Protein (SXL-lethal pro 99.0 1.3E-09 4.4E-14 62.6 6.2 38 12-49 87-124 (168)
180 2qfj_A FBP-interacting repress 99.0 9.5E-10 3.2E-14 65.4 5.5 37 12-48 123-159 (216)
181 1qm9_A Polypyrimidine tract-bi 99.0 9.1E-10 3.1E-14 65.2 5.0 37 14-50 3-40 (198)
182 2g4b_A Splicing factor U2AF 65 99.0 6.5E-10 2.2E-14 64.1 4.2 41 13-60 3-54 (172)
183 2bz2_A Negative elongation fac 99.0 7E-10 2.4E-14 62.9 4.0 35 12-48 37-71 (121)
184 3egn_A RNA-binding protein 40; 98.9 2.4E-10 8.3E-15 65.6 1.9 33 12-44 43-75 (143)
185 3smz_A Protein raver-1, ribonu 98.9 1.2E-09 4.2E-14 67.8 4.8 41 12-60 20-60 (284)
186 2fc8_A NCL protein; structure 98.9 1.7E-09 5.7E-14 58.7 4.7 34 8-41 9-42 (102)
187 3pgw_A U1-A; protein-RNA compl 98.9 2.4E-09 8.1E-14 66.4 5.6 37 12-48 205-241 (282)
188 2yh0_A Splicing factor U2AF 65 98.9 1.6E-09 5.3E-14 63.7 4.2 36 13-48 3-49 (198)
189 3tyt_A Heterogeneous nuclear r 98.9 1.1E-09 3.8E-14 66.6 3.4 36 14-49 123-160 (205)
190 3smz_A Protein raver-1, ribonu 98.9 3.5E-09 1.2E-13 65.7 5.5 36 13-48 94-129 (284)
191 3sde_A Paraspeckle component 1 98.9 3.6E-09 1.2E-13 65.6 5.3 46 13-60 95-140 (261)
192 2ghp_A U4/U6 snRNA-associated 98.8 2.8E-09 9.6E-14 66.4 3.9 49 12-60 208-257 (292)
193 2adc_A Polypyrimidine tract-bi 98.8 1.2E-08 4.1E-13 62.2 5.9 35 14-48 151-186 (229)
194 1fje_B Nucleolin RBD12, protei 98.8 1.2E-08 4E-13 59.2 5.4 34 11-44 96-129 (175)
195 1qm9_A Polypyrimidine tract-bi 98.8 1.1E-08 3.7E-13 60.5 5.3 36 13-48 119-155 (198)
196 1fje_B Nucleolin RBD12, protei 98.7 1.6E-08 5.6E-13 58.5 4.2 35 9-43 8-42 (175)
197 2diu_A KIAA0430 protein; struc 98.5 1.7E-07 5.9E-12 52.2 4.7 30 15-44 10-44 (96)
198 2pe8_A Splicing factor 45; RRM 98.5 2.4E-07 8.1E-12 51.4 5.2 49 12-60 6-59 (105)
199 1owx_A Lupus LA protein, SS-B, 98.5 1.1E-07 3.6E-12 54.8 3.4 44 12-55 16-61 (121)
200 2d9o_A DNAJ (HSP40) homolog, s 98.5 5.7E-07 1.9E-11 49.7 6.2 36 13-48 9-51 (100)
201 1jmt_A Splicing factor U2AF 35 98.2 8.2E-08 2.8E-12 53.1 -1.2 40 19-60 20-71 (104)
202 2dit_A HIV TAT specific factor 98.2 3.6E-06 1.2E-10 46.4 5.4 38 10-47 11-59 (112)
203 3v4m_A Splicing factor U2AF 65 97.9 1.3E-05 4.4E-10 44.2 3.7 47 14-60 5-62 (105)
204 3ue2_A Poly(U)-binding-splicin 97.9 2E-05 6.9E-10 44.5 4.5 47 13-59 19-73 (118)
205 3s6e_A RNA-binding protein 39; 97.1 0.0003 1E-08 39.4 2.6 22 28-49 31-52 (114)
206 2dnr_A Synaptojanin-1; RRM dom 96.0 0.01 3.4E-07 32.5 3.9 35 14-48 7-49 (91)
207 3pq1_A Poly(A) RNA polymerase; 96.0 0.0039 1.3E-07 42.4 2.7 35 13-48 52-86 (464)
208 1whv_A Poly(A)-specific ribonu 95.9 0.016 5.6E-07 32.2 4.5 34 9-42 10-43 (100)
209 3dxb_A Thioredoxin N-terminall 95.6 0.011 3.9E-07 35.3 3.4 26 25-50 140-165 (222)
210 2dhx_A Poly (ADP-ribose) polym 95.0 0.12 4E-06 28.9 5.9 34 14-47 8-46 (104)
211 3ctr_A Poly(A)-specific ribonu 93.9 0.055 1.9E-06 30.1 3.0 26 16-41 7-32 (101)
212 1ufw_A Synaptojanin 2; RNP dom 93.8 0.027 9.2E-07 31.0 1.5 37 12-48 13-58 (95)
213 1uw4_A UPF3X; nonsense mediate 93.4 0.09 3.1E-06 28.5 3.3 28 15-42 2-29 (91)
214 4f25_A Polyadenylate-binding p 92.1 0.029 9.8E-07 30.5 0.1 18 13-30 96-113 (115)
215 2l08_A Regulator of nonsense t 88.2 0.22 7.4E-06 27.4 1.5 25 14-38 9-33 (97)
216 2l9w_A U4/U6 snRNA-associated- 85.5 1.6 5.3E-05 24.8 4.1 37 12-48 19-60 (117)
217 1wwh_A Nucleoporin 35, nucleop 76.6 3 0.0001 23.6 3.2 33 13-46 23-55 (119)
218 3fut_A Dimethyladenosine trans 69.5 6.6 0.00022 24.4 3.9 32 15-47 111-142 (271)
219 1wey_A Calcipressin 1; structu 68.5 3.6 0.00012 22.7 2.2 34 14-47 5-43 (104)
220 3d45_A Poly(A)-specific ribonu 62.4 9.7 0.00033 25.9 3.8 28 15-42 440-467 (507)
221 3uzu_A Ribosomal RNA small sub 60.3 3.7 0.00013 25.6 1.4 33 15-47 115-147 (279)
222 3tqs_A Ribosomal RNA small sub 59.0 3.1 0.00011 25.6 0.9 30 18-47 100-129 (255)
223 3ftd_A Dimethyladenosine trans 55.9 12 0.00041 22.7 3.2 32 16-47 97-128 (249)
224 4aj5_1 SKA3, spindle and kinet 54.5 5.3 0.00018 22.0 1.2 11 29-39 91-101 (101)
225 1eij_A Hypothetical protein MT 50.8 12 0.00041 19.7 2.2 20 20-39 50-69 (80)
226 1qyr_A KSGA, high level kasuga 49.7 20 0.00067 21.9 3.4 32 16-47 92-123 (252)
227 1i4w_A Mitochondrial replicati 44.4 23 0.0008 23.0 3.3 21 17-37 145-165 (353)
228 2fh0_A Hypothetical 16.0 kDa p 43.4 14 0.00047 19.5 1.7 19 20-38 48-66 (81)
229 3pc6_A DNA repair protein XRCC 41.0 31 0.0011 18.5 3.0 27 14-40 10-36 (104)
230 1hdj_A Human HSP40, HDJ-1; mol 38.6 25 0.00086 17.3 2.3 18 20-37 9-26 (77)
231 1fme_A FSD-EY peptide; beta-BE 38.1 21 0.00072 14.8 1.6 12 27-38 14-25 (28)
232 2och_A Hypothetical protein DN 37.5 27 0.00093 17.0 2.3 19 19-37 13-31 (73)
233 2ctp_A DNAJ homolog subfamily 37.3 27 0.00092 17.2 2.3 20 19-38 12-31 (78)
234 2dn9_A DNAJ homolog subfamily 37.0 28 0.00094 17.2 2.3 20 19-38 12-31 (79)
235 1ik9_C DNA ligase IV; DNA END 36.4 32 0.0011 15.2 2.3 16 23-38 19-34 (37)
236 3swz_A Steroid 17-alpha-hydrox 35.5 18 0.00063 23.1 1.8 33 14-46 14-50 (494)
237 2od0_A Hypothetical protein VP 34.2 21 0.00073 18.8 1.7 18 26-43 4-21 (105)
238 2ej7_A HCG3 gene; HCG3 protein 33.9 33 0.0011 17.0 2.3 20 19-38 14-33 (82)
239 1wjz_A 1700030A21RIK protein; 33.8 19 0.00063 18.4 1.3 21 19-39 21-41 (94)
240 2yua_A Williams-beuren syndrom 33.5 18 0.00061 18.9 1.2 19 19-37 22-40 (99)
241 2cru_A Programmed cell death p 32.6 24 0.00083 19.7 1.7 20 20-39 80-99 (118)
242 2ctr_A DNAJ homolog subfamily 32.6 35 0.0012 17.3 2.3 19 19-37 12-30 (88)
243 2cug_A Mkiaa0962 protein; DNAJ 31.0 37 0.0013 17.2 2.2 20 19-38 22-41 (88)
244 3p3d_A Nucleoporin 53; structu 30.4 20 0.00068 20.5 1.1 27 16-43 9-35 (132)
245 1bq0_A DNAJ, HSP40; chaperone, 30.4 22 0.00074 18.7 1.3 19 19-37 8-26 (103)
246 2o37_A Protein SIS1; HSP40, J- 29.7 41 0.0014 17.2 2.3 19 19-37 13-31 (92)
247 2lgw_A DNAJ homolog subfamily 28.3 26 0.00087 18.5 1.3 18 20-37 8-25 (99)
248 2hvu_A PDCD5-like protein; YMR 28.0 34 0.0012 19.1 1.8 19 20-38 83-101 (116)
249 2ys8_A RAB-related GTP-binding 27.9 47 0.0016 17.0 2.3 19 19-37 32-50 (90)
250 2jxn_A Uncharacterized protein 27.8 35 0.0012 19.3 1.9 19 20-38 83-101 (127)
251 3pc7_A DNA ligase 3; DNA repai 26.1 39 0.0013 17.8 1.8 22 15-39 20-42 (88)
252 2ctq_A DNAJ homolog subfamily 25.7 29 0.001 18.5 1.3 19 19-37 25-43 (112)
253 2guz_A Mitochondrial import in 25.4 58 0.002 15.8 2.3 19 19-37 19-38 (71)
254 3ts2_A Protein LIN-28 homolog 24.4 6.2 0.00021 22.7 -1.8 14 29-42 2-15 (148)
255 2ctw_A DNAJ homolog subfamily 23.9 59 0.002 17.2 2.3 19 19-37 22-40 (109)
256 1jei_A Emerin; membrane protei 23.5 58 0.002 15.7 2.0 16 25-40 5-20 (53)
257 2dmx_A DNAJ homolog subfamily 23.3 35 0.0012 17.3 1.3 19 19-37 14-32 (92)
258 2jsh_A Appetite-regulating hor 22.3 33 0.0011 14.3 0.8 20 23-42 4-23 (26)
259 1ytr_A Bacteriocin plantaricin 22.1 54 0.0019 13.3 1.5 11 29-39 15-25 (26)
260 1faf_A Large T antigen; J doma 21.8 70 0.0024 15.9 2.2 19 19-37 16-36 (79)
261 4b79_A PA4098, probable short- 21.7 51 0.0017 20.1 1.9 17 26-42 64-80 (242)
262 2bdr_A Ureidoglycolate hydrola 21.1 26 0.00089 20.7 0.5 12 32-43 11-22 (175)
263 1cp2_A CP2, nitrogenase iron p 20.6 47 0.0016 19.5 1.6 17 23-39 253-269 (269)
264 1xsq_A Ureidoglycolate hydrola 20.2 28 0.00095 20.4 0.5 12 32-43 10-21 (168)
No 1
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-14 Score=81.95 Aligned_cols=43 Identities=21% Similarity=0.093 Sum_probs=38.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+...++|||+|||++++|++|+++|++||+|.+|.|++ +||||
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-------~kGfa 55 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-------GKNQA 55 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-------TTTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-------CCCEE
Confidence 45678999999999999999999999999999999998 56664
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=78.11 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=39.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+.++|||+|||+++|+++|+++|++||+|.++.+.+ +.....+||||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~-d~~tg~~kG~a 64 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYG 64 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE-CSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee-cCCCCcccccE
Confidence 457899999999999999999999999999999887 33334556664
No 3
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=78.65 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=41.4
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||||||+++|+++|+++|++||+|.+|.++++.. ..+||||
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~--g~~rG~a 55 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSI 55 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT--TSCCCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC--CCCccEE
Confidence 44568899999999999999999999999999999998544 5677775
No 4
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=3.1e-14 Score=77.14 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=34.1
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
.......+|||||||+++++++|+++|++||+|.++.++++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 34456789999999999999999999999999999998873
No 5
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.47 E-value=1.2e-13 Score=73.55 Aligned_cols=53 Identities=34% Similarity=0.488 Sum_probs=40.7
Q ss_pred cccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 7 ISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 7 ~~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+......++|||+|||+++++++|+++|++||+|.++.+.++ .....++|||
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 56 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD-PNTGRSRGFG 56 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccccEE
Confidence 3455567889999999999999999999999999999998873 2223445553
No 6
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=79.60 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=35.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..++|||+|||+++++++|+++|++||+|.+|.+++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~ 65 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK 65 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 34567899999999999999999999999999999988
No 7
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=76.82 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=34.8
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..++|||+|||+++++++|+++|++||.|.+|.+++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~ 49 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK 49 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 34567899999999999999999999999999998887
No 8
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=76.14 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..++|||+|||+++++++|+++|++||+|.+|.+++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~ 49 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP 49 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 34567899999999999999999999999999998887
No 9
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.44 E-value=9.5e-14 Score=77.91 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=37.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|||||||+++++++|+++|++||+|.+|.|.++..+ +||||
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~---~kg~a 48 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG---SKGYG 48 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE---EEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC---CCceE
Confidence 3568999999999999999999999999999999885332 46664
No 10
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1e-13 Score=77.58 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=34.5
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSA-PTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~-~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|||+ +++++||+++|++||+|.+|.|++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~ 50 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN 50 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc
Confidence 3567899999999 999999999999999999999988
No 11
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=71.51 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=36.9
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
+......++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC
Confidence 34456678999999999999999999999999999999988
No 12
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=75.94 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=38.4
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+..+.|||+|||+++++++|+++|++||+|.+|.+.+ +||||
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-------~kg~A 60 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-------KKRQA 60 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-------TTTEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-------CCCEE
Confidence 334567899999999999999999999999999999887 67665
No 13
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=75.69 Aligned_cols=48 Identities=10% Similarity=-0.007 Sum_probs=39.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+..++|||+|||+++++++|+++|++||+|.+|.|++ +.....+||||
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~-d~~tg~~rG~a 51 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILL-HPRTRKHLGLA 51 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE-CTTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE-CCCCCceeeEE
Confidence 3467899999999999999999999999999999987 33334566664
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.40 E-value=7.1e-14 Score=75.88 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=38.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFG-PVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG-~V~~v~i~~~~~g~~~~k~fg 60 (60)
++.|||+|||+++||++|+++|++|| +|.+|.+++ +.....+||||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~-d~~t~~~rg~a 47 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMR-NKSSGQSRGFA 47 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSS-CSSSCCCSSEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEe-cCCCCCcCceE
Confidence 35799999999999999999999999 899998887 44445677775
No 15
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.7e-13 Score=72.12 Aligned_cols=52 Identities=33% Similarity=0.512 Sum_probs=40.7
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.......++|||+|||+++++++|+++|++||+|.+|.+.++ .....+||||
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 60 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD-LKTGHSKGFG 60 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC-SSSCSEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec-CCCCCccceE
Confidence 344556788999999999999999999999999999998873 2223345553
No 16
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.3e-13 Score=71.32 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=34.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
...++|||+|||+++++++|+++|++||+|.++.+.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 34689999999999999999999999999999998863
No 17
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=74.62 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=40.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCc--eeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGP--VYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~--V~~v~i~~~~~g~~~~k~fg 60 (60)
.....+|||+|||+++|+++|+++|++||. |.+|.+.+ +.....+||||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~-d~~tg~srG~a 56 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIK-DKQTQQNRGFA 56 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCC-CSSSSSCSSEE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEe-cCCCCCCceEe
Confidence 456788999999999999999999999995 66788877 44445677775
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=71.37 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=40.5
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......++|||+|||+++++++|+++|++||+|.+|.+.++ .....+||||
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~a 55 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD-AEKQRPRGFG 55 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC-TTTCSCCSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCCCceE
Confidence 34456789999999999999999999999999999998873 2223345553
No 19
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=73.15 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=39.6
Q ss_pred ccCcccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 4 FINISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 4 ~~~~~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
..+.++.....++|||+|||+.+++++|+++|++||+|.++.+.++
T Consensus 16 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 61 (108)
T 2jrs_A 16 ANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 61 (108)
T ss_dssp CCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 3444556667789999999999999999999999999999998873
No 20
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.38 E-value=7.9e-13 Score=73.62 Aligned_cols=51 Identities=37% Similarity=0.481 Sum_probs=38.0
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+.....++|||+|||+++++++|+++|++||+|.+|.+.++ .....+||||
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~kg~a 70 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFG 70 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC-TTTCCCTTCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC-CCCCCcCcEE
Confidence 34456788999999999999999999999999999999873 2233456664
No 21
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.6e-12 Score=72.40 Aligned_cols=52 Identities=35% Similarity=0.440 Sum_probs=41.1
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++ .....+||||
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~a 62 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYG 62 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC-SSSCCCCSEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc-CCCCccceEE
Confidence 344556789999999999999999999999999999998873 2223445553
No 22
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-12 Score=71.97 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=40.8
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++ .-...++|||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 60 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH-PDTEHSKGCA 60 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCCBCSEE
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCccEE
Confidence 344456788999999999999999999999999999998863 2223345554
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-12 Score=71.46 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=41.5
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+.+++++|+++|++||+|.+|.+.++......++|||
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~a 61 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFG 61 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEE
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceE
Confidence 34455678899999999999999999999999999999987422233445553
No 24
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=76.67 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=40.4
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeE--EEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYY--TACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~--v~i~~~~~g~~~~k~fg 60 (60)
.....++|||||||+++++++|+++|++||.|.. |.|+++ .-...+||||
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d-~~tg~~rG~a 70 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD-KQTQLNRGFA 70 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC-SSSSSBCSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc-CCCCCcceEE
Confidence 3345678999999999999999999999999966 888873 3334567775
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2e-12 Score=70.76 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=41.0
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++. ....+||||
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~a 60 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR-VTGQHQGYG 60 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS-SSCSBCSCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCcCCcEE
Confidence 3445567899999999999999999999999999999888732 223455553
No 26
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=9.3e-13 Score=71.67 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=36.1
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
......++|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 49 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK 49 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec
Confidence 3445677999999999999999999999999999999987
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=70.79 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=40.9
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++ .....+||||
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~a 58 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE-PHTKAPRGFA 58 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC-SSSCSBCSCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCCCeEE
Confidence 344556789999999999999999999999999999988873 2223445554
No 28
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.37 E-value=7.2e-13 Score=72.66 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=41.1
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++ .....+||||
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 58 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD-RFTGMHKGCA 58 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC-SSSCSCCSEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcceEE
Confidence 344556788999999999999999999999999999998873 2223445553
No 29
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=3e-13 Score=76.93 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAP-TTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~-~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||++ +++++|+++|++||+|.+|.+++ +||||
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-------~kg~a 65 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-------MKSQA 65 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-------TTTEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-------CCCEE
Confidence 34678999999998 99999999999999999999987 67765
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.8e-12 Score=70.85 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=40.8
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++..+ ++|||
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~g~a 58 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG---SKGFG 58 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT---TCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcEEE
Confidence 344566789999999999999999999999999999999874322 45553
No 31
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.37 E-value=6.2e-13 Score=80.59 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||||||++++|++|+++|++||+|.+|.+++ +....+++|||
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-d~~tg~~~G~a 60 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR-DMITRRSLGYA 60 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE-CTTTCCEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEec-ccCCCCccccc
Confidence 34467899999999999999999999999999999987 33334455554
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=71.16 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=35.7
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCcee-EEEEee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVY-YTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~-~v~i~~ 48 (60)
.....++|||+|||+++++++|+++|++||+|. ++.+.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~ 44 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR 44 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEee
Confidence 345678999999999999999999999999999 998887
No 33
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.36 E-value=6.1e-13 Score=72.64 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=40.8
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......++|||+|||+++++++|+++|++||.|.++.+.++. ...+||||
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~a 53 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR--TGVSKGYG 53 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCccceE
Confidence 344556889999999999999999999999999999998843 33455654
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.36 E-value=2e-12 Score=70.74 Aligned_cols=48 Identities=29% Similarity=0.313 Sum_probs=39.4
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.++.+.++.. ..+||||
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~a 59 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD--GSSKGCA 59 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS--SCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcCcEE
Confidence 34578899999999999999999999999999999987432 2345553
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.5e-12 Score=69.09 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=40.1
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+..++|||+|||+++++++|+++|++||+|.++.+.++. ....++|||
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~a 61 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK-DTRKSKGVA 61 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS-SSCCCTTCE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCCcccEE
Confidence 344567899999999999999999999999999999988732 222345553
No 36
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=71.71 Aligned_cols=41 Identities=34% Similarity=0.496 Sum_probs=36.8
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
......++|||+|||+++++++|+++|++||+|.+|.+.++
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 51 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD 51 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 34566789999999999999999999999999999998873
No 37
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.2e-12 Score=71.30 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 61 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP 61 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence 4467899999999999999999999999999999886
No 38
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.36 E-value=6.4e-13 Score=68.96 Aligned_cols=44 Identities=52% Similarity=0.679 Sum_probs=36.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+|||+|||+++++++|+++|++||+|.++.+.++. ....++|||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~a 44 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK-TTNRHRGFG 44 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS-SSTTSCBEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCCcCcEE
Confidence 68999999999999999999999999999888732 233455654
No 39
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.36 E-value=1.9e-12 Score=72.21 Aligned_cols=49 Identities=24% Similarity=0.151 Sum_probs=39.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.++.+.++ .....+||||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~a 85 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID-KQTSLSKCFG 85 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC-SSSSCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCcCcEE
Confidence 345678999999999999999999999999999998873 2223445553
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=70.88 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=39.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeec--CCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF--GISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~--g~~~~k~fg 60 (60)
...++|||+|||+++++++|+++|++||+|.+|.+.++.. |...+||||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~a 53 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFG 53 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEE
Confidence 3467899999999999999999999999999999887443 333455554
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.36 E-value=1.7e-12 Score=72.20 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=35.7
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
.....++|||+|||+++++++|+++|++||.|.+|.+.++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID 60 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 3445678999999999999999999999999999998873
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.35 E-value=2.5e-12 Score=69.94 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=41.6
Q ss_pred cccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeE--------EEEeeeecCCCCccccC
Q psy7530 7 ISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYY--------TACDRFIFGISPVKNFG 60 (60)
Q Consensus 7 ~~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~--------v~i~~~~~g~~~~k~fg 60 (60)
.+.......+|||+|||+++++++|+++|++||.|.+ +.+.++ .....+||||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~G~a 66 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEA 66 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC-TTTCSEEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec-CCCCCeeeEE
Confidence 3445567789999999999999999999999999999 888773 2223445554
No 43
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=7.3e-13 Score=68.84 Aligned_cols=45 Identities=40% Similarity=0.536 Sum_probs=36.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
++|||+|||+++++++|+++|++||+|.++.+.++. ....++|||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~~~~g~a 45 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP-LTKRSRGFG 45 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC-CSSSCSSEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC-CCCCcCceE
Confidence 479999999999999999999999999999988732 223455554
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.35 E-value=2.5e-12 Score=71.49 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=37.1
Q ss_pred cccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 7 ISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 7 ~~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
........++|||+|||+++++++|+++|++||.|.+|.+.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 49 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 334455678899999999999999999999999999999987
No 45
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.6e-12 Score=72.25 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++||.|.+|.+.++ .....++|||
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 70 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-RNSRRSKGIA 70 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS-CCSSSCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec-CCCCccCcEE
Confidence 4568999999999999999999999999999998862 2223455554
No 46
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.2e-12 Score=70.53 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=40.7
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++..+ .||||
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~g~a 58 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS---NDPYC 58 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS---SCCEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC---CCCEE
Confidence 344556789999999999999999999999999999999885322 35554
No 47
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.2e-12 Score=73.04 Aligned_cols=47 Identities=36% Similarity=0.581 Sum_probs=38.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++||+|.+|.+.++ .....+||||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 72 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD-PASKRSRGFG 72 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC-TTTSSCCSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CCCCCcCceE
Confidence 4578999999999999999999999999999999873 2223345553
No 48
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.2e-12 Score=70.72 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=38.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+++++++|+++|++||+|.+|.+.+ ......++|||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~-~~~~~~~~g~a 68 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL-DRRTGYLKGYT 68 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE-CTTTSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe-cCCCCceeeEE
Confidence 3457899999999999999999999999999999886 22223445553
No 49
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.4e-12 Score=69.00 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=38.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+..++|||+|||+++++++|+++|++||+|.++.+..+ .....++|||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~a 50 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD-KTTNKCKGYG 50 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC-SSSCSCCSEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCcEE
Confidence 45689999999999999999999999999999988873 2223345553
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=69.97 Aligned_cols=50 Identities=26% Similarity=0.289 Sum_probs=40.0
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......++|||+|||+.+++++|+++|++||+|.+|.+.++.. ..+||||
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~a 60 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE--GKPKSFG 60 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--SCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC--CCCceEE
Confidence 3445678999999999999999999999999999999987443 3345543
No 51
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.5e-12 Score=68.46 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=35.7
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
......++|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 49 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY 49 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 3445567899999999999999999999999999998886
No 52
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.4e-12 Score=69.83 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=38.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.++.+.++. ....++|||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~a 53 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS-LTKKPKGFA 53 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT-TTCCCCSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-CCCCcCeEE
Confidence 3457889999999999999999999999999999888732 222344553
No 53
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.34 E-value=1.6e-12 Score=76.62 Aligned_cols=53 Identities=30% Similarity=0.432 Sum_probs=41.0
Q ss_pred cccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 7 ISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 7 ~~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+......++|||+|||+++++++|+++|++||+|.+|.++++ .....++|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 58 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFG 58 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc-CCCCCccceE
Confidence 3445567789999999999999999999999999999998873 2223345553
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=68.70 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....+|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK 40 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe
Confidence 3467899999999999999999999999999999887
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.33 E-value=2e-12 Score=68.21 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=35.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
....++|||+|||+++++++|+++|++||+|.++.+.++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~ 42 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 42 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC
Confidence 345788999999999999999999999999999988773
No 56
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.8e-12 Score=72.03 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=40.8
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.++.+.++.. .+||||
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~~kg~a 72 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER---GSKGFG 72 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT---BCTTEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC---CCceEE
Confidence 34455678899999999999999999999999999999987432 256654
No 57
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.7e-12 Score=69.56 Aligned_cols=37 Identities=27% Similarity=0.547 Sum_probs=34.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~ 51 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK 51 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC
Confidence 4567899999999999999999999999999998887
No 58
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.7e-12 Score=70.18 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=39.5
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeE-EEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYY-TACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~-v~i~~~~~g~~~~k~fg 60 (60)
......+|||+|||+++++++|+++|++||.|.+ |.+..+. ..++||||
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~--~g~~~G~a 60 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF--QGRSTGEA 60 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS--SSCBCSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC--CCCcceEE
Confidence 3456789999999999999999999999999987 7777642 33566664
No 59
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.2e-12 Score=70.26 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=40.2
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......++|||+|||+++++++|+++|++||+|.+|.+.++ ......+|||
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~a 57 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFA 57 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC-SSSCCCSSEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec-CCCCCcceEE
Confidence 34456789999999999999999999999999999988773 2222345543
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-12 Score=70.03 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=36.5
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
......++|||+|||+++++++|+++|++||+|.++.+.++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 34456789999999999999999999999999999998874
No 61
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.33 E-value=2.4e-12 Score=67.69 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=36.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+|||+|||+++++++|+++|++||+|.++.+.++ .....++|||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~a 46 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYG 46 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCccceE
Confidence 57999999999999999999999999999988873 2223345553
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.2e-12 Score=69.06 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=39.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.++.+..+. ...+||||
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~a 61 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR--AGKPKGLA 61 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCEEeEE
Confidence 3456789999999999999999999999999999988743 23344543
No 63
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.8e-12 Score=68.04 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=38.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+..++|||+|||+++++++|+++|++||+|.++.+.++. ....++|||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~a 50 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS-DTGRSKGYG 50 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS-SSCCCCSEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC-CCCceeeEE
Confidence 456899999999999999999999999999999988732 223345543
No 64
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.9e-12 Score=72.38 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=33.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..++|||+|||+++++++|+++|++||.|.+|.+.+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 457899999999999999999999999999998877
No 65
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.3e-12 Score=70.38 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=36.1
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
......++|||+|||+++++++|+++|++||+|.+|.+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~ 49 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK 49 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEee
Confidence 3445678899999999999999999999999999999887
No 66
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.32 E-value=8.7e-13 Score=68.35 Aligned_cols=44 Identities=36% Similarity=0.491 Sum_probs=36.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+|||+|||+++++++|+++|++||+|.++.+.++ .....++|||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~a 44 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFC 44 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS-CCCSSSCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCCEE
Confidence 5899999999999999999999999999988763 2223456654
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.32 E-value=3.8e-12 Score=70.23 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=38.8
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+.+++++|+++|++||.|.++.+..+ .....++|||
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~a 71 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYA 71 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC-TTTSSBCSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEE
Confidence 345678999999999999999999999999999988762 2223445554
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.31 E-value=3.9e-12 Score=67.58 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=37.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++||+|.++.+.++ .....++|||
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~a 51 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD-KFSGHPKGFA 51 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES-CSSSSCCEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCcceEE
Confidence 4578999999999999999999999999999988873 2223345553
No 69
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.2e-12 Score=74.84 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=33.4
Q ss_pred CCcceEEE--eCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFV--GGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfV--g~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++||| |||++++++++|+++|++||+|.+|.+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 61 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 34678999 88999999999999999999999988876
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4e-12 Score=69.43 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=39.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhc-CCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQ-FGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~-fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....+|||+|||+++++++|+++|++ ||.|.+|.+.++. ...+||||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~a 54 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYG 54 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceE
Confidence 345688999999999999999999999 9999999998743 33455554
No 71
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.3e-12 Score=69.09 Aligned_cols=40 Identities=28% Similarity=0.499 Sum_probs=36.2
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
......++|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~ 46 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVK 46 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 3445678999999999999999999999999999999887
No 72
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.3e-12 Score=69.41 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=35.8
Q ss_pred ccCCcceEEEeCCCCCCCHHHHH----HHHhcCCceeEEEEeee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVK----NYFEQFGPVYYTACDRF 49 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~----~~F~~fG~V~~v~i~~~ 49 (60)
+.....+|||+|||+++++++|+ ++|++||+|.+|.+.++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~ 48 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH 48 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC
Confidence 34456789999999999999999 99999999999999873
No 73
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6.1e-12 Score=68.90 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=39.3
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......+|||+|||+++++++|+++|++|| |.+|.+.++......++|||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~a 60 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFG 60 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEE
Confidence 445568899999999999999999999999 99999887332113456654
No 74
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.30 E-value=4.1e-12 Score=68.74 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=37.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.++|||+|||+++++++|+++|++||.|.++.+.++ .....++|||
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 47 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD-PQTGRSKGYA 47 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTCCBCSEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCccceEE
Confidence 468999999999999999999999999999988873 2223445554
No 75
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.30 E-value=1.6e-12 Score=69.88 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=35.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFG--PVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG--~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+|||||||+++++++|+++|++|| .|.++.+.++ .....+||||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~-~~~g~~kG~a 48 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFA 48 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC-TTTCCEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec-CCCCccCcEE
Confidence 3689999999999999999999999 9999988873 2233456654
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.6e-12 Score=70.89 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=35.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 42 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY 42 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 34568999999999999999999999999999999887
No 77
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=6.7e-12 Score=68.64 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=39.5
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++|| |.+|.++++ .....++|||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~-~~~g~~~g~a 59 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD-KDTDKFKGFC 59 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC-SSSCSEEEEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec-CCCCccceEE
Confidence 34455678899999999999999999999997 999998873 2223345553
No 78
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.30 E-value=1.5e-12 Score=71.91 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=37.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...-||||||+++++|++|+++|.+||+|.++.+.. +||||
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfa 46 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIA 46 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEE
Confidence 356799999999999999999999999999999887 67775
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.30 E-value=6.4e-12 Score=67.20 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=35.4
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....++|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~ 42 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM 42 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 345678999999999999999999999999999998886
No 80
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.30 E-value=1.3e-12 Score=71.73 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=39.0
Q ss_pred CcceEEEeCCCC------CCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSA------PTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~------~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+.|||+|||+ ++++++|+++|++||+|.+|.++++ .....+||||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d-~~tg~~kG~a 57 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID-EATGKTKGFL 57 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEE
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc-CCCCccceEE
Confidence 356899999999 9999999999999999999999873 3334566664
No 81
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=67.76 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=33.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..++|||+|||+++++++|+++|++||.|.++.+..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 38 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 38 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 467899999999999999999999999999998876
No 82
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.2e-12 Score=71.43 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=37.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecC--CCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG--ISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g--~~~~k~fg 60 (60)
...++|||||||+++++++|+++|++||+|. +.++.+... ..++||||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~a 55 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYA 55 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEE
Confidence 4568899999999999999999999999998 656542211 13566664
No 83
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.29 E-value=5e-12 Score=72.19 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=38.8
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.+|.+.++. ....+||||
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~a 87 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR-ETRQSRGYG 87 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET-TTTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCCcceEE
Confidence 3456789999999999999999999999999999988732 223345543
No 84
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.29 E-value=5.7e-12 Score=70.86 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=39.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+++++++|+++|++||.|.+|.+..+. ...++|||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~a 51 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR--TSKSRGFA 51 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST--TTTCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcccEE
Confidence 456899999999999999999999999999999998844 33455554
No 85
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.28 E-value=5.5e-12 Score=69.59 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=38.1
Q ss_pred cCCcceEEEeCCCCCC------CHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPT------TLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~------~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||||||+.+ ++++|+++|++||+|.+|.+.+ ..| .+||||
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~g--~~~G~a 64 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDG--KTKGYI 64 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BTT--BSCCEE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CCC--CeeeEE
Confidence 3346789999999999 7899999999999999998874 333 566664
No 86
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=5.2e-12 Score=72.79 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=38.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++||+|.++.+.++ .....+||||
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 48 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD-PATGRSRGFG 48 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC-TTTSSCCSCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC-CCCCCccceE
Confidence 3678999999999999999999999999999998873 2233456664
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.3e-12 Score=70.30 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=40.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCc-eeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGP-VYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~-V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+++++++|+++|++||. |.++.+.........+||||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~a 55 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 55 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEE
Confidence 34678999999999999999999999999 99998873344444567765
No 88
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=5.6e-12 Score=70.44 Aligned_cols=49 Identities=8% Similarity=-0.132 Sum_probs=40.4
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCce-eEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV-YYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V-~~v~i~~~~~g~~~~k~fg 60 (60)
......+|||+|||+++++++|+++|++||.| .+|.++++. ...+||||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~--~g~~~G~a 60 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN--NGQGLGQA 60 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT--TSSCSSCE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC--CCCcceEE
Confidence 34456789999999999999999999999999 888888744 34566664
No 89
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=7.2e-12 Score=69.48 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=39.3
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.++.+.++. ...+||||
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~~~g~a 69 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS--SGTSRGVG 69 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS--SSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcceEE
Confidence 3456789999999999999999999999999999998843 23445553
No 90
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.28 E-value=4.8e-12 Score=74.73 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=37.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFG--PVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG--~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||||||+++++++|+++|++|| .|.+|.++++ .-...+||||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d-~~tg~skGfa 102 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN-RANGQSKGYA 102 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC-TTTCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec-CCCCccceEE
Confidence 356899999999999999999999999 9999998873 2233456664
No 91
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.2e-12 Score=68.40 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=38.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE-EEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT-ACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v-~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+++++++|+++|++||.|.++ .+.++ .....++|||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~-~~~g~~~g~a 51 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-PDTGNSKGYA 51 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC-TTTCSCCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc-CCCCCcCeEE
Confidence 356899999999999999999999999999988 88873 2223345553
No 92
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.4e-12 Score=70.08 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=35.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....++|||+|||+++++++|+++|++||.|.+|.+.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 59 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 59 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 34567899999999999999999999999999999987
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=8.8e-12 Score=69.02 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=39.5
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....++|||+|||+++++++|+++|++||+|.+|.+.++.. ..++|||
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~--g~~~g~a 59 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD--GKSRGIG 59 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT--CSEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCeeeEE
Confidence 344568899999999999999999999999999999887432 2345543
No 94
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.27 E-value=2.7e-12 Score=72.55 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=34.0
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCC-ceeEEEEe
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFG-PVYYTACD 47 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG-~V~~v~i~ 47 (60)
++......+|||+|||+++++++|+++|++|| +|..+.+.
T Consensus 22 ~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~ 62 (111)
T 2jvr_A 22 SKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN 62 (111)
T ss_dssp ---CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE
Confidence 44555678999999999999999999999999 99998885
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.27 E-value=1e-11 Score=69.87 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=39.1
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......+|||+|||+++++++|+++|++||.|.+|.+..+. ....++|||
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~a 67 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-RTGYLKGYT 67 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-TTSSBCSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCccceEE
Confidence 33456789999999999999999999999999999888732 122345553
No 96
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.27 E-value=4.9e-12 Score=66.71 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=35.6
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPT------TLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~------~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
++|||+|||+.+ ++++|+++|++||+|.++.+.+ .. ..+||||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~~--g~~~g~a 50 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-ED--GKTKGYI 50 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-BT--TBCCCEE
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-CC--CcEeEEE
Confidence 679999999999 7799999999999999998774 22 2456664
No 97
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.27 E-value=8.3e-12 Score=72.45 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....+|||+|||+++++++|+++|++||+|.++.+.++ .....+||||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~-~~~g~~~g~a 115 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFA 115 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC-SSCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCccceEE
Confidence 44678999999999999999999999999999988873 2233456654
No 98
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=70.16 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=39.4
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.++.+.++ .....+||||
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~a 108 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFA 108 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC-TTTCCCCSEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec-CCCCCcCcEE
Confidence 345778999999999999999999999999999988773 2223455554
No 99
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.27 E-value=8.3e-12 Score=68.46 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=39.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+.+++++|+++|++||+|.+|.+..+. ...++|||
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~a 73 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTA 73 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcceEE
Confidence 3456789999999999999999999999999999988743 22345543
No 100
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=8.2e-12 Score=69.09 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=36.0
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
......+|||+|||+++++++|+++|++||+|.++.+.++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 3455789999999999999999999999999999988874
No 101
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.26 E-value=8.4e-12 Score=71.89 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=41.0
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+......++|||+|||+++++++|+++|++||+|.+|.+.++. -...+||||
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~g~~~G~a 92 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-YTKESRGFA 92 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS-SSSSCCSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCccceEE
Confidence 3444556789999999999999999999999999999888732 223456664
No 102
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.26 E-value=9.5e-12 Score=71.29 Aligned_cols=49 Identities=22% Similarity=0.193 Sum_probs=39.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+++|++||+|.+|.+.++ ......||||
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~a 91 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFA 91 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC-SSSSCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEE
Confidence 345678999999999999999999999999999998863 2223455554
No 103
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.26 E-value=5.6e-12 Score=74.10 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=40.7
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGL----SAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L----~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.+|||||| ||.+++++|+++|++||+|.++.+.. ++-+.+++|||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~-Dp~Tg~slGfg 51 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFN-DPNSALPLHVY 51 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEE-CTTTCCEEEEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEe-cCCCCceeeEE
Confidence 68999999 99999999999999999999999888 66677778775
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.26 E-value=6.2e-12 Score=70.89 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=39.8
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGP---VYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~---V~~v~i~~~~~g~~~~k~fg 60 (60)
.....+|||+|||+++++++|+++|++||. |.+|.+.++.. .++||||
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~--g~~~G~a 64 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE--GRQSGEA 64 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS--SCEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC--CCCCeEE
Confidence 445678999999999999999999999999 88898887443 4556664
No 105
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.26 E-value=4.5e-12 Score=73.76 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=40.1
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGP---VYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~---V~~v~i~~~~~g~~~~k~fg 60 (60)
.....+|||+|||+++|+++|+++|++||. |.+|.+.++.. .++||||
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~--g~srG~a 91 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE--GRQSGEA 91 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS--SCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC--CCCCeEE
Confidence 345678999999999999999999999999 88898887443 4567765
No 106
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.26 E-value=5.9e-12 Score=72.87 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=36.0
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
.....++|||||||+++++++|+++|++||+|.+|.+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 3445688999999999999999999999999999999884
No 107
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.7e-11 Score=67.62 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=34.9
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....++|||+|||+++++++|+++|++||.|.++.+..
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~ 56 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 56 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 344567899999999999999999999999999998865
No 108
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=66.21 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=34.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....++|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 42 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 42 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 45678999999999999999999999999999988774
No 109
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=70.49 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=37.5
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....++|||+|||+++++++|+++|++|| |.+|.+.++......+||||
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~a 64 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFG 64 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEE
Confidence 345678899999999999999999999999 99999887432234556664
No 110
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.25 E-value=3.2e-12 Score=70.77 Aligned_cols=50 Identities=20% Similarity=0.024 Sum_probs=41.2
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeecCCCCccccC
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGP---VYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~---V~~v~i~~~~~g~~~~k~fg 60 (60)
.......+|||+|||+++++++|+++|++||. |.+|.+.++.. .++||||
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~--g~~~G~a 58 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD--GKRRGDA 58 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT--STTCSEE
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC--CCEeeEE
Confidence 34456788999999999999999999999998 88899887443 4566664
No 111
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=9.6e-12 Score=71.84 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=38.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecC-CCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG-ISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g-~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++||+|.++.+.++..+ ...+||||
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~a 50 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCC 50 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEE
Confidence 4578999999999999999999999999999998874322 11355554
No 112
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.25 E-value=8.5e-12 Score=70.05 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=37.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++||+|.+|.+.++ .....++|||
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~a 81 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD-KFSGHPKGYA 81 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE-CTTSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcccEE
Confidence 3578999999999999999999999999999998873 2223345553
No 113
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.24 E-value=1.6e-12 Score=69.45 Aligned_cols=45 Identities=36% Similarity=0.486 Sum_probs=37.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
++|||+|||+++++++|+++|++||+|.++.+.++ .....++|||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~a 46 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD-RETKKPKGFG 46 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC-SSSCCCCEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc-CCCCCcceEE
Confidence 58999999999999999999999999999998873 2223455554
No 114
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.24 E-value=1.4e-11 Score=71.61 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=34.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|||+.+++++|+++|++||+|.+|.|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 73 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL 73 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 4567899999999999999999999999999999877
No 115
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.24 E-value=2.6e-11 Score=68.22 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+++++++|+++|++||+|.+|.+.++. ...++|||
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~g~~~g~a 79 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR--SGRSLGTA 79 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS--SSSCCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC--CCCEeeEE
Confidence 455789999999999999999999999999999998744 33455554
No 116
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=70.43 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=38.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....+|||+|||++++++||+++|++| .|.+|.|+++.. .++||||
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~--g~~~G~a 59 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV--GRNNGNG 59 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT--CCCCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC--CCCCeEE
Confidence 345689999999999999999999999 899999987543 4567775
No 117
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.4e-11 Score=68.22 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=39.1
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCcee--------EEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVY--------YTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~--------~v~i~~~~~g~~~~k~fg 60 (60)
.....++|||+|||+++++++|+++|++||.|. .|.+.++ .....+||||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~a 68 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD-KETGKPKGDA 68 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC-TTTCSBCSEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe-CCCCCeeeEE
Confidence 445678999999999999999999999999998 5887773 2223445553
No 118
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.23 E-value=8.4e-12 Score=72.91 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=38.3
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....+|||+|||+++++++|+++|++|| |.+|.|+++.. .++||||
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~--g~srGfa 89 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD--GRVTGEA 89 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS--SCSSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC--CCCceEE
Confidence 34567899999999999999999999999 66898887543 4677775
No 119
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.23 E-value=1.1e-11 Score=65.59 Aligned_cols=37 Identities=22% Similarity=0.497 Sum_probs=34.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcC----C-------ceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQF----G-------PVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~f----G-------~V~~v~i~~ 48 (60)
...++|||+|||+++++++|+++|++| | +|.++.+.+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~ 51 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ 51 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC
Confidence 356889999999999999999999999 8 999999887
No 120
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=8.5e-12 Score=67.92 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=32.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
++|||+|||+++++++|+++|++||+|.++.+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 47999999999999999999999999999998873
No 121
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.22 E-value=1.5e-11 Score=76.30 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=37.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFG--PVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG--~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|||+||++++++++|+++|++|| +|.+|.|+++ .-...+||||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d-~~tg~skGfa 115 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFA 115 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC-TTTCCEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec-CCCCccceEE
Confidence 456899999999999999999999999 9999999873 2233455654
No 122
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-11 Score=65.04 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=36.1
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
......++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~ 44 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 44 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC
Confidence 3455678999999999999999999999999999998886
No 123
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.22 E-value=2.3e-11 Score=67.22 Aligned_cols=37 Identities=22% Similarity=0.506 Sum_probs=32.9
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAP-TTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~-~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|||++ +++++|+++|++||+|.+|.+.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~ 62 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHK 62 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEET
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeC
Confidence 34579999999999 99999999999999999988743
No 124
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.21 E-value=4.6e-12 Score=68.12 Aligned_cols=38 Identities=11% Similarity=0.280 Sum_probs=32.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..++|||+|||+++++++|+++|++||.|.++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~ 49 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK 49 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 34468899999999999999999999999998776665
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.21 E-value=2.9e-11 Score=67.08 Aligned_cols=37 Identities=16% Similarity=0.405 Sum_probs=34.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN 42 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 4467899999999999999999999999999998876
No 126
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.21 E-value=2e-11 Score=70.41 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=38.4
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCcee--EEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVY--YTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~--~v~i~~~~~g~~~~k~fg 60 (60)
.....+|||+|||+++++++|+++|++| .|. +|.|+++.. .++||||
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~--GrsrGfa 87 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE--GKITGEA 87 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS--SSSCSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC--CCCceEE
Confidence 3456789999999999999999999999 566 788887544 4667775
No 127
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=8.1e-12 Score=67.57 Aligned_cols=39 Identities=10% Similarity=0.240 Sum_probs=33.6
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~ 49 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK 49 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEE
Confidence 344567899999999999999999999999998766665
No 128
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.2e-11 Score=68.28 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=38.4
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......+|||+|||+++++++|+++|++||.| +|.++++. ..++||||
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~--~g~~~G~a 58 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP--DGRVTGEA 58 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS--SSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC--CCCEeeEE
Confidence 33456789999999999999999999999955 88888743 34566664
No 129
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.21 E-value=2.2e-11 Score=71.67 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....+|||+|||+.+++++|+++|++||+|.+|.+.+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 106 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL 106 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe
Confidence 3456799999999999999999999999999999887
No 130
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.2e-11 Score=66.39 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=32.0
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCc-eeEEEEe
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGP-VYYTACD 47 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~-V~~v~i~ 47 (60)
.....++|||+|||+++++++|+++|++||. |..+.+.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~ 42 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL 42 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc
Confidence 3456789999999999999999999999999 6555543
No 131
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.20 E-value=2.3e-11 Score=67.69 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=34.5
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
......++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~k 65 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN 65 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEET
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 3445678899999999999999999999999999988773
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.20 E-value=1.8e-11 Score=66.00 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=33.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHH----HHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVK----NYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~----~~F~~fG~V~~v~i~~ 48 (60)
.+..++|||+|||+++++++|+ ++|++||.|.++.+.+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR 46 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc
Confidence 3457899999999999999999 9999999999988773
No 133
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=70.44 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=38.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCce----eEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPV----YYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V----~~v~i~~~~~g~~~~k~fg 60 (60)
....+|||+|||++++++||+++|++||.| .+|.+.++. ..++||||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~--~gr~~G~a 71 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP--DGRPTGDA 71 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT--TSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC--CCCEeeEE
Confidence 456789999999999999999999999986 678888753 33566664
No 134
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=1.5e-11 Score=68.41 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=34.8
Q ss_pred cCCcceEEEeCCCCCCCHHHHH---HHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVK---NYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~---~~F~~fG~V~~v~i~~ 48 (60)
....++|||+|||+++++++|+ ++|++||+|.++.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~ 52 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINN 52 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEEC
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEec
Confidence 3456789999999999999999 9999999999999887
No 135
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.18 E-value=2.5e-11 Score=66.43 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=34.5
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....++|||+|||+++++++|+++|++||.|.+|.+.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 45 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK 45 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 34568899999999999999999999999999988876
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=3.7e-11 Score=64.28 Aligned_cols=39 Identities=33% Similarity=0.432 Sum_probs=35.4
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....++|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~ 43 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 43 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC
Confidence 345678899999999999999999999999999998886
No 137
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.18 E-value=4.3e-11 Score=68.51 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=33.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.++|||+|||+++++++|+++|++||+|.++.+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~ 36 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR 36 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 57899999999999999999999999999999887
No 138
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.3e-11 Score=69.74 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....+|||+|||+++++++|+++|++||.|.++.++.+. -...+||||
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~-~~g~~~G~a 70 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-PNGKATGEG 70 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-TTSSEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC-CCCCCCeEE
Confidence 355789999999999999999999999999874333311 123445554
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=4.7e-11 Score=68.69 Aligned_cols=45 Identities=7% Similarity=0.103 Sum_probs=36.0
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVK----NYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~----~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+..++|||||||+.+++++|+ ++|++||+|.+|.+.+ ..++||||
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~----~~~~rG~a 75 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL----SDDNSGKA 75 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC----CCSSCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc----CCCcCCEE
Confidence 346789999999999999876 6999999998887754 12456665
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.17 E-value=3.7e-11 Score=69.08 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=33.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
.++|||+|||+++++++|+++|++||+|.++.+.++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 38 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD 38 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe
Confidence 578999999999999999999999999999988873
No 141
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=6.8e-11 Score=63.22 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=38.8
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
......+|||+|||+++++++|+++|++| .|.+|.++++.. ..++|||
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~--g~~~g~a 53 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH--GNKTGYI 53 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT--SCEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC--CCCceEE
Confidence 34567889999999999999999999999 999999988532 2345553
No 142
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9.4e-11 Score=63.17 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=31.8
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
.....++|||+|||+++++++|+++|++||+|.+|
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 34567899999999999999999999999999887
No 143
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.16 E-value=1.7e-11 Score=68.72 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=33.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
....+|||+|||+++++++|+++|++||+|.+|.+..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 35678999999999999999999999999999988874
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=3e-11 Score=65.49 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=33.3
Q ss_pred cCCcceEEEeCCCC-CCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSA-PTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~-~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..++|||+|||+ ++++++|+++|++||+|.++.+.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 45 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN 45 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC
Confidence 34578999999999 999999999999999999988764
No 145
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.15 E-value=3.4e-11 Score=64.34 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..++|||+|||+++++++|+++|++| +|.++.+.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~ 38 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR 38 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC
Confidence 46789999999999999999999999 999988865
No 146
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.4e-11 Score=63.50 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=31.5
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.+..++|||+|||+++++++|+++|++||.|. +.+..
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~ 52 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW 52 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc
Confidence 34567999999999999999999999999996 44443
No 147
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.3e-10 Score=63.02 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=34.6
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcC--CceeEEEEee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQF--GPVYYTACDR 48 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~f--G~V~~v~i~~ 48 (60)
......++|||+|||+++++++|+++|++| |.|.++.+.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR 51 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC
Confidence 344567899999999999999999999999 9998877665
No 148
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.13 E-value=5.3e-11 Score=73.97 Aligned_cols=42 Identities=36% Similarity=0.583 Sum_probs=37.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+++|+++|+++|++||.|.+|.+.+ +||||
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-------~kg~a 61 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-------DRGFG 61 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-------TTTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-------CCcEE
Confidence 4567899999999999999999999999999999987 66664
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.1e-11 Score=69.04 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=36.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
++|||+|||+++++++|+++|++||+|.++.+.++..| .++|||
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~--~~~g~a 44 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN--KNVNYA 44 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC---CCEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCC--CCCCEE
Confidence 57999999999999999999999999999999874432 345553
No 150
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.4e-10 Score=62.81 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=31.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....++|||+|| ++++++|+++|++||+|.+|.+.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~ 47 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP 47 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC
Confidence 345678999996 899999999999999999998876
No 151
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.5e-11 Score=68.15 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
...++|||+|||+++++++|+++|++||.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~ 55 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP 55 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccce
Confidence 356789999999999999999999999999443
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.5e-11 Score=63.49 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=33.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE-EEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT-ACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v-~i~~ 48 (60)
...++|||+|||+++++++|+++|++||.|.++ .+..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~ 50 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT 50 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 456889999999999999999999999999998 4665
No 153
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.11 E-value=7.7e-11 Score=71.39 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=38.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.++|||+|||+++++++|+++|++||+|.+|.+.++.. ..+||||
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~--~~~kG~a 153 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSI 153 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT--CCEEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC--CCcccEE
Confidence 47899999999999999999999999999999887433 3456664
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.11 E-value=1.1e-10 Score=69.94 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=38.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+.+++++|+++|++||+|.+|.+..+. ...++|||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~g~~kG~a 132 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR--SGRSLGTA 132 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT--TSSCSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCEeeEE
Confidence 345789999999999999999999999999999998743 33455554
No 155
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.71 E-value=6.8e-12 Score=69.96 Aligned_cols=38 Identities=32% Similarity=0.491 Sum_probs=34.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeE--------EEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYY--------TACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~--------v~i~~ 48 (60)
....++|||+|||+++++++|+++|++||.|.+ |.+.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~ 49 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT 49 (116)
Confidence 455788999999999999999999999999988 77766
No 156
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.11 E-value=9.9e-11 Score=63.85 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=34.0
Q ss_pred ccCCcceEEEeCCCC-CCCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSA-PTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~-~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..+..++|||+|||+ ++++++|+++|++||.|.++.+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~ 57 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN 57 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC
Confidence 334678899999998 999999999999999999888754
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.10 E-value=1.4e-10 Score=68.23 Aligned_cols=47 Identities=32% Similarity=0.536 Sum_probs=37.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|||+|||+++++++|+++|++||.|.++.+.++ .....++|||
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~a 149 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFA 149 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec-CCCCCccceE
Confidence 4578999999999999999999999999999998873 2222345543
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.10 E-value=1.2e-10 Score=69.32 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=33.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..++|||+|||+++++++|+++|++||+|.+|.+.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~ 62 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW 62 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee
Confidence 457899999999999999999999999999999876
No 159
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=1.9e-10 Score=66.24 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=32.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..-+|||+||++.+++++|+++|++||+|.+|.|.+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 445689999999999999999999999999998865
No 160
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.10 E-value=1.6e-11 Score=66.85 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=29.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeE
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~ 43 (60)
....+|||+|||+++++++|+++|++||.|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 35678999999999999999999999999876
No 161
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.09 E-value=5.8e-11 Score=74.85 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=37.6
Q ss_pred cCCcceEEEeCCCCCC---------CHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPT---------TLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~---------~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++||||||++.+ +|++|+++|++||+|.+|.|+. +||||
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-------~kG~A 182 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-------SKNCG 182 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-------GGTEE
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-------CCCEE
Confidence 3456789999999998 7999999999999999999987 66664
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.09 E-value=1.6e-10 Score=66.69 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=38.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+.+++++|+++|++||.|.++.+.++..| .++|||
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g--~~~g~a 139 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG--LSRGCA 139 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS--CEEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCC--CEEEEE
Confidence 5678999999999999999999999999999999885433 345553
No 163
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.08 E-value=6.3e-11 Score=63.81 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=31.5
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
......++|||+|||+.+++++|+++|++||.|..+
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 344567889999999999999999999999998765
No 164
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=62.16 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.2
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....++|||+|||+++++++|+++|++||.| .+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~ 46 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ 46 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEE
Confidence 44567899999999999999999999999997 4454
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.08 E-value=3.2e-10 Score=65.43 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=34.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
....+|||+|||+++++++|+++|++||+|.++.+.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec
Confidence 34678999999999999999999999999999999873
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.5e-10 Score=64.57 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=34.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....+|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 121 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 121 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe
Confidence 34567899999999999999999999999999998887
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.07 E-value=1.5e-10 Score=70.06 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=37.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|||+|||+.+++++|+++|++||.|.++.|.++..+ +||||
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~---~~g~~ 146 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG---SKGYG 146 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE---EEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC---CceEE
Confidence 4568999999999999999999999999999999875332 45554
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.07 E-value=2.2e-10 Score=69.91 Aligned_cols=42 Identities=14% Similarity=0.050 Sum_probs=36.8
Q ss_pred cccCCcceEEEeCCCC-CCCHHHHHHHHhcCCceeEEEEeeee
Q psy7530 9 QMVTRTKKIFVGGLSA-PTTLEDVKNYFEQFGPVYYTACDRFI 50 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~-~~~e~~l~~~F~~fG~V~~v~i~~~~ 50 (60)
...+..++|||+|||+ ++++++|+++|++||.|.+|.+.++.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 3445678999999999 99999999999999999999998733
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.06 E-value=2.8e-10 Score=69.30 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=33.9
Q ss_pred CcceEEEeCCC-CCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 13 RTKKIFVGGLS-APTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 13 ~~~klfVg~L~-~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
..+.|||+||| +.+++++|+++|++||.|.+|.++++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~ 40 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS 40 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC
Confidence 45789999999 89999999999999999999998873
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.04 E-value=1.7e-10 Score=71.97 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=37.1
Q ss_pred ccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
.....++|||+|||+++++++|+++|++||+|.+|.+.++..| ++|||
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~g~a 84 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK---NFRFA 84 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS---SSEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC---CcEEE
Confidence 3445778999999999999999999999999999999885433 35554
No 171
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.03 E-value=4.1e-10 Score=75.32 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=33.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
..++|||+|||+.+++++|+++|++||.|..|.|+.+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d 137 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS 137 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc
Confidence 3478999999999999999999999999999988863
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.03 E-value=2.6e-10 Score=68.58 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=33.9
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
.....+|||+||++.+++++|+++|++||+|.+|.|..
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~ 80 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 80 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 34567899999999999999999999999999998864
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.03 E-value=1.8e-10 Score=66.29 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=38.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++||.|.++.+.++ .....++|||
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~a 132 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD-KDTGQSRGFG 132 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCS-SSSSTTSEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEc-CCCCccceEE
Confidence 3568999999999999999999999999999988873 2223445554
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.01 E-value=5.4e-10 Score=64.98 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=33.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...-+|||+||++.+++++|+++|++||+|.+|.+.+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~ 62 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 62 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc
Confidence 4566799999999999999999999999999998776
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.01 E-value=5.7e-10 Score=69.23 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=37.5
Q ss_pred cCCcceEEEeCCCCCCCHHHHH----HHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVK----NYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~----~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....++|||+|||+++++++|+ ++|++||.|.+|.+.+ ..++||||
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~a 55 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQA 55 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEE
Confidence 3557899999999999999977 8999999999988775 22355554
No 176
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.01 E-value=7.9e-10 Score=65.01 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=34.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
...++|||+|||+.+++++|+++|++||.|.++.+.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec
Confidence 45678999999999999999999999999999998873
No 177
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=3.6e-10 Score=74.25 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=37.1
Q ss_pred ccCCcceEEEeC--CCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 10 MVTRTKKIFVGG--LSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 10 ~~~~~~klfVg~--L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..+.+++||||| |++.++|++|+++|++||+|.+|.+.+ +||||
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-------~kgfa 59 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-------NKPYS 59 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-------TCSEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-------CCCEE
Confidence 345578899999 689999999999999999999987766 56664
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.00 E-value=8.9e-10 Score=62.94 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=34.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....+|||+|||+.+++++|+++|++||.|.++.+.+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 122 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 122 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEe
Confidence 3567899999999999999999999999999998887
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.99 E-value=1.3e-09 Score=62.57 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=34.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
....+|||+|||+.+++++|+++|++||.|.++.+.++
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 124 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD 124 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc
Confidence 45678999999999999999999999999999988873
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.98 E-value=9.5e-10 Score=65.42 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=34.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
....+|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 159 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLAR 159 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEe
Confidence 3457899999999999999999999999999999887
No 181
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.96 E-value=9.1e-10 Score=65.21 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=33.9
Q ss_pred cceEEEeCCCC-CCCHHHHHHHHhcCCceeEEEEeeee
Q psy7530 14 TKKIFVGGLSA-PTTLEDVKNYFEQFGPVYYTACDRFI 50 (60)
Q Consensus 14 ~~klfVg~L~~-~~~e~~l~~~F~~fG~V~~v~i~~~~ 50 (60)
.++|||+|||+ ++++++|+++|++||.|.+|.+.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~ 40 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 40 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 47899999999 99999999999999999999988743
No 182
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.96 E-value=6.5e-10 Score=64.14 Aligned_cols=41 Identities=27% Similarity=0.552 Sum_probs=35.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC----C-------ceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQF----G-------PVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~f----G-------~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++|||+|||+++++++|+++|++| | .|.++.+.+ +||||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-------~~g~a 54 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFA 54 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-------TTTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-------CCCEE
Confidence 46789999999999999999999999 6 787777776 66664
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.95 E-value=7e-10 Score=62.90 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|| ++++++|+++|++||+|.+|.+.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~ 71 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP 71 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC
Confidence 45678999996 699999999999999999998876
No 184
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.94 E-value=2.4e-10 Score=65.55 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=29.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
...++|||+|||+++++++|+++|++||.|.++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 456789999999999999999999999998763
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.92 E-value=1.2e-09 Score=67.77 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=35.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...++|||+|||+++++++|+++|++|| |.++.+.+ ++|||
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~-------~~g~a 60 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDK-------YKGTA 60 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEET-------TTTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEec-------CCCEE
Confidence 3567899999999999999999999999 98888866 66664
No 186
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=58.66 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=28.9
Q ss_pred ccccCCcceEEEeCCCCCCCHHHHHHHHhcCCce
Q psy7530 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 8 ~~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V 41 (60)
.......++|||+|||+++++++|+++|++|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~ 42 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRA 42 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEE
Confidence 3344567889999999999999999999999754
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.90 E-value=2.4e-09 Score=66.42 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=34.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++|||+|||+++++++|+++|++||.|.+|.+.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 3467899999999999999999999999999998887
No 188
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.89 E-value=1.6e-09 Score=63.73 Aligned_cols=36 Identities=22% Similarity=0.507 Sum_probs=30.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC----C-------ceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQF----G-------PVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~f----G-------~V~~v~i~~ 48 (60)
..++|||+|||+++++++|+++|++| | .|.++.+.+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~ 49 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ 49 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC
Confidence 36789999999999999999999999 5 676666666
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.88 E-value=1.1e-09 Score=66.60 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=32.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCce--eEEEEeee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPV--YYTACDRF 49 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~V--~~v~i~~~ 49 (60)
.++|||+|||+++++++|+++|++||.| .++.+..+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 4579999999999999999999999999 88888773
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.87 E-value=3.5e-09 Score=65.72 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=33.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...+|||+|||+++++++|+++|++||.|.++.+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 457899999999999999999999999999998876
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.86 E-value=3.6e-09 Score=65.64 Aligned_cols=46 Identities=24% Similarity=0.174 Sum_probs=38.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
...+|||+|||+.+++++|+++|++||.|.+|.+..+.. ..++|||
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~a 140 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR--GRATGKG 140 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--SCEEEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC--CCcCcEE
Confidence 356899999999999999999999999999999988533 3445554
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.83 E-value=2.8e-09 Score=66.36 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=38.3
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSAP-TTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~~-~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
....+|||+|||+. +++++|+++|++||.|.+|.+.++..+...++|||
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~a 257 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCA 257 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEE
Confidence 34578999999999 99999999999999999998887443123445553
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.79 E-value=1.2e-08 Score=62.16 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=32.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCC-ceeEEEEee
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFG-PVYYTACDR 48 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG-~V~~v~i~~ 48 (60)
..+|||+|||+.+++++|+++|++|| .|.++.+..
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 57899999999999999999999999 999998854
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.79 E-value=1.2e-08 Score=59.16 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=30.1
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHHhcCCceeEE
Q psy7530 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYT 44 (60)
Q Consensus 11 ~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v 44 (60)
.....+|||+|||+++++++|+++|++||.|..+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 3456789999999999999999999999998655
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.78 E-value=1.1e-08 Score=60.52 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=33.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCC-ceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFG-PVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG-~V~~v~i~~ 48 (60)
...+|||+|||+.+++++|+++|++|| .|.++.+..
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 367899999999999999999999999 999998855
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.70 E-value=1.6e-08 Score=58.52 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=30.7
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCceeE
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~ 43 (60)
......++|||+|||+++++++|+++|++||.+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~ 42 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND 42 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 34556789999999999999999999999998765
No 197
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=52.18 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=25.7
Q ss_pred ceEEEeCCCCCCCHHH----HHHHHhcC-CceeEE
Q psy7530 15 KKIFVGGLSAPTTLED----VKNYFEQF-GPVYYT 44 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~----l~~~F~~f-G~V~~v 44 (60)
.-|||+|||+++++++ |+++|++| |+|.+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 3499999999999988 55899999 599766
No 198
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.50 E-value=2.4e-07 Score=51.44 Aligned_cols=49 Identities=12% Similarity=-0.034 Sum_probs=35.8
Q ss_pred CCcceEEEeCCCC-----CCCHHHHHHHHhcCCceeEEEEeeeecCCCCccccC
Q psy7530 12 TRTKKIFVGGLSA-----PTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 12 ~~~~klfVg~L~~-----~~~e~~l~~~F~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
..++-|++.||.. +.++++|++.|++||+|.+|.|.++.....++||||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~ 59 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRI 59 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEE
Confidence 3466799999962 347899999999999999999987432223456664
No 199
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.1e-07 Score=54.76 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=36.2
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHHhcCCceeEEEEeeee-cCCCC
Q psy7530 12 TRTKKIFVGGLSAP-TTLEDVKNYFEQFGPVYYTACDRFI-FGISP 55 (60)
Q Consensus 12 ~~~~klfVg~L~~~-~~e~~l~~~F~~fG~V~~v~i~~~~-~g~~~ 55 (60)
+.-.-|||+||+++ +++++|+++|++||+|..|++.++. +||.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVr 61 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL 61 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEE
Confidence 34567999999999 9999999999999999999887632 44443
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=5.7e-07 Score=49.75 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=27.9
Q ss_pred CcceEEEeCCC-------CCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLS-------APTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~-------~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
...++-|.-.. .++++++|+++|++||+|.+|.+++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~ 51 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS 51 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc
Confidence 34556555443 4579999999999999999998874
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.21 E-value=8.2e-08 Score=53.12 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=31.1
Q ss_pred EeCCCCCCCHHHHHHHH------------hcCCceeEEEEeeeecCCCCccccC
Q psy7530 19 VGGLSAPTTLEDVKNYF------------EQFGPVYYTACDRFIFGISPVKNFG 60 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F------------~~fG~V~~v~i~~~~~g~~~~k~fg 60 (60)
+.+||+.+++++|+++| ++||+|.+|.|.++..| ++||||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~--~~~G~~ 71 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD--HLVGNV 71 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS--SSEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC--CccEEE
Confidence 57888888888888777 99999999999885433 566764
No 202
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=3.6e-06 Score=46.43 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=29.7
Q ss_pred ccCCcceEEEeCCCCCCC-----------HHHHHHHHhcCCceeEEEEe
Q psy7530 10 MVTRTKKIFVGGLSAPTT-----------LEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 10 ~~~~~~klfVg~L~~~~~-----------e~~l~~~F~~fG~V~~v~i~ 47 (60)
.....+.|+|.||..... +++|+++|++||+|.+|.|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~ 59 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 59 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe
Confidence 334567799999954432 68999999999999999663
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.89 E-value=1.3e-05 Score=44.22 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=33.4
Q ss_pred cceEEEeCC--CCCCC--------HHHHHHHHhcCCceeEEEEeeeecCC-CCccccC
Q psy7530 14 TKKIFVGGL--SAPTT--------LEDVKNYFEQFGPVYYTACDRFIFGI-SPVKNFG 60 (60)
Q Consensus 14 ~~klfVg~L--~~~~~--------e~~l~~~F~~fG~V~~v~i~~~~~g~-~~~k~fg 60 (60)
++-|.+.|+ |.+.. ++||++.|++||+|.+|.|.++..+. .+++|||
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~ 62 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI 62 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEE
Confidence 455778886 33443 37999999999999999998855432 3456653
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.89 E-value=2e-05 Score=44.49 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=34.8
Q ss_pred CcceEEEeCCC--C---CCCHHHHHHHHhcCCceeEEEEeeeecC---CCCcccc
Q psy7530 13 RTKKIFVGGLS--A---PTTLEDVKNYFEQFGPVYYTACDRFIFG---ISPVKNF 59 (60)
Q Consensus 13 ~~~klfVg~L~--~---~~~e~~l~~~F~~fG~V~~v~i~~~~~g---~~~~k~f 59 (60)
.++-|++.|+- . +--++||++.|++||+|.+|.|.++..+ ..+++||
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~ 73 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK 73 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE
Confidence 45678999983 2 2246899999999999999999986543 3445555
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.12 E-value=0.0003 Score=39.45 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCceeEEEEeee
Q psy7530 28 LEDVKNYFEQFGPVYYTACDRF 49 (60)
Q Consensus 28 e~~l~~~F~~fG~V~~v~i~~~ 49 (60)
++||++.|++||+|.+|.|.++
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~ 52 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKN 52 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTT
T ss_pred HHHHHHHHhccCCEEEEEEecC
Confidence 3689999999999999998873
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.02 E-value=0.01 Score=32.49 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=25.4
Q ss_pred cceEEEeCCC----CCCCH----HHHHHHHhcCCceeEEEEee
Q psy7530 14 TKKIFVGGLS----APTTL----EDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 14 ~~klfVg~L~----~~~~e----~~l~~~F~~fG~V~~v~i~~ 48 (60)
..+++|.-.+ ...-. .+|.+.|++||+|..+++..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~ 49 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE 49 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4456666554 22323 67999999999999998887
No 207
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.02 E-value=0.0039 Score=42.43 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=27.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~~ 48 (60)
..+.+||. .|..+++.+|.+||++||+|.++..-+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~ 86 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE 86 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc
Confidence 34569997 688999999999999999999987766
No 208
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.92 E-value=0.016 Score=32.22 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=27.2
Q ss_pred cccCCcceEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 9 ~~~~~~~klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
+..+....+|+-+.|+.....||.++|++||-|.
T Consensus 10 d~~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~ 43 (100)
T 1whv_A 10 DLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ 43 (100)
T ss_dssp CCCCCCCSEEEEECCTTCCHHHHHHHHTTTCSCC
T ss_pred CCCCCCCeEEEEeCChhhhhHHHHHHhhccCCEE
Confidence 3444555666669999999999999999999663
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.63 E-value=0.011 Score=35.30 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHhcCCceeEEEEeeee
Q psy7530 25 PTTLEDVKNYFEQFGPVYYTACDRFI 50 (60)
Q Consensus 25 ~~~e~~l~~~F~~fG~V~~v~i~~~~ 50 (60)
+-.+++|++.|++||+|.++.|.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~ 165 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEK 165 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCC
Confidence 34568999999999999999887644
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.95 E-value=0.12 Score=28.88 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=29.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcC-----CceeEEEEe
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQF-----GPVYYTACD 47 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~f-----G~V~~v~i~ 47 (60)
..++.|.|||+.+.++.|+-||+.= |+|.+|++.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc
Confidence 4679999999999999999999992 799888765
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.92 E-value=0.055 Score=30.10 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCce
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V 41 (60)
.+|+-+.|+.+...||.++|++||-|
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE
Confidence 45555999999999999999999965
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.75 E-value=0.027 Score=31.01 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=27.3
Q ss_pred CCcceEEEeCCCCC-----CCH----HHHHHHHhcCCceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAP-----TTL----EDVKNYFEQFGPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~-----~~e----~~l~~~F~~fG~V~~v~i~~ 48 (60)
+...+++|.-++.. .-. .+|.+.|++||+|..+++..
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~ 58 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ 58 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 34567888877633 212 56999999999999998877
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.42 E-value=0.09 Score=28.47 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=25.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
.|+-|.+||+..||+++.+..+.+.++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d 29 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD 29 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce
Confidence 5899999999999999999999988754
No 214
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=92.14 E-value=0.029 Score=30.52 Aligned_cols=18 Identities=6% Similarity=0.230 Sum_probs=0.0
Q ss_pred CcceEEEeCCCCCCCHHH
Q psy7530 13 RTKKIFVGGLSAPTTLED 30 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~ 30 (60)
...++||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 445799999999999874
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.18 E-value=0.22 Score=27.39 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=20.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcC
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~f 38 (60)
.-||-|..||+..||+++.+.++.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~ 33 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL 33 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc
Confidence 5689999999999999877655544
No 216
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=85.51 E-value=1.6 Score=24.79 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=32.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcC-----CceeEEEEee
Q psy7530 12 TRTKKIFVGGLSAPTTLEDVKNYFEQF-----GPVYYTACDR 48 (60)
Q Consensus 12 ~~~~klfVg~L~~~~~e~~l~~~F~~f-----G~V~~v~i~~ 48 (60)
...+.+-+=+||..+++..+|.+.+++ |.+..+.+..
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p 60 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS 60 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec
Confidence 346778889999999999999999999 9998886665
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=76.56 E-value=3 Score=23.56 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=25.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCceeEEEE
Q psy7530 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 13 ~~~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i 46 (60)
...-+-|=+.|+.. -..+-++|++||+|.+...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 34557788888875 4567889999999977654
No 218
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=69.53 E-value=6.6 Score=24.44 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=27.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
.-..|+|||+.++.+-|..+++. ..+.++.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45789999999999999999988 777776555
No 219
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.50 E-value=3.6 Score=22.74 Aligned_cols=34 Identities=3% Similarity=-0.020 Sum_probs=25.0
Q ss_pred cceEEEeCCCCCC-C----HHHHHHHHhcCCceeEEEEe
Q psy7530 14 TKKIFVGGLSAPT-T----LEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 14 ~~klfVg~L~~~~-~----e~~l~~~F~~fG~V~~v~i~ 47 (60)
...|++.||+.++ + .+.++++|.+|+++..-...
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l 43 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec
Confidence 4569999998754 2 25779999999988665443
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.41 E-value=9.7 Score=25.87 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=22.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCcee
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~ 42 (60)
..+|+-..|..+...+|.+.|+.||.|.
T Consensus 440 ~~vl~v~f~~~~~~~~i~~~fs~fg~v~ 467 (507)
T 3d45_A 440 DHVLHVTFPKEWKTSDLYQLFSAFGNIQ 467 (507)
T ss_dssp GGEEEEECCTTCCHHHHHHHGGGGCCCE
T ss_pred CcEEEEeCCCCCCHHHHHHHHHhcCCEE
Confidence 3455555999999999999999999763
No 221
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=60.27 E-value=3.7 Score=25.65 Aligned_cols=33 Identities=9% Similarity=-0.090 Sum_probs=27.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 15 ~klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
.-..|+|||+.++.+-|..+++.-..+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 346899999999999999999887777776655
No 222
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=59.00 E-value=3.1 Score=25.59 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=26.3
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 18 FVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 18 fVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
.|+|||+.++.+-|..+++....+..+.++
T Consensus 100 vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 100 VVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 899999999999999999988888777665
No 223
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=55.93 E-value=12 Score=22.73 Aligned_cols=32 Identities=16% Similarity=-0.053 Sum_probs=25.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
-..|+|+|+.++.+-|..+++....+..+.++
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 37899999999999999998876666665544
No 224
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=54.47 E-value=5.3 Score=22.04 Aligned_cols=11 Identities=27% Similarity=1.056 Sum_probs=8.9
Q ss_pred HHHHHHHhcCC
Q psy7530 29 EDVKNYFEQFG 39 (60)
Q Consensus 29 ~~l~~~F~~fG 39 (60)
..||++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 57899999998
No 225
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=50.80 E-value=12 Score=19.68 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.8
Q ss_pred eCCCCCCCHHHHHHHHhcCC
Q psy7530 20 GGLSAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG 39 (60)
|.|+..++|++|.++.++..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 78899999999999998864
No 226
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=49.71 E-value=20 Score=21.87 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=24.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACD 47 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~v~i~ 47 (60)
-..|+|||+.++.+-+..+++..-.+..+.++
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 47899999999999888887765555554443
No 227
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=44.40 E-value=23 Score=22.97 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=18.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhc
Q psy7530 17 IFVGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 17 lfVg~L~~~~~e~~l~~~F~~ 37 (60)
..|||||+.++..-|-.+++.
T Consensus 145 ~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 145 LTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEECCSTTHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHh
Confidence 789999999999988888774
No 228
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=43.38 E-value=14 Score=19.52 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=16.8
Q ss_pred eCCCCCCCHHHHHHHHhcC
Q psy7530 20 GGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~f 38 (60)
|.|+..++|++|.++.++.
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6789999999999998875
No 229
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=41.04 E-value=31 Score=18.55 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=21.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCc
Q psy7530 14 TKKIFVGGLSAPTTLEDVKNYFEQFGP 40 (60)
Q Consensus 14 ~~klfVg~L~~~~~e~~l~~~F~~fG~ 40 (60)
..++|+.+..+......|++++-.||=
T Consensus 10 g~~f~l~~~~p~~~r~~l~ryiia~GG 36 (104)
T 3pc6_A 10 GKHFFLYGEFPGDERRRLIRYVTAFNG 36 (104)
T ss_dssp TCEEEEESCCSTTHHHHHHHHHHHTTC
T ss_pred CeEEEEcCCCcHHHHHHHHHHHHHcCC
Confidence 467899887765567889999999973
No 230
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=38.58 E-value=25 Score=17.26 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.8
Q ss_pred eCCCCCCCHHHHHHHHhc
Q psy7530 20 GGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~ 37 (60)
-+|++..+.++|+..|.+
T Consensus 9 Lgv~~~as~~~Ik~ayr~ 26 (77)
T 1hdj_A 9 LGLARGASDEEIKRAYRR 26 (77)
T ss_dssp HTCCTTCCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 468889999999988754
No 231
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=38.13 E-value=21 Score=14.81 Aligned_cols=12 Identities=17% Similarity=0.736 Sum_probs=10.2
Q ss_pred CHHHHHHHHhcC
Q psy7530 27 TLEDVKNYFEQF 38 (60)
Q Consensus 27 ~e~~l~~~F~~f 38 (60)
+|.+||++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999998877
No 232
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=37.52 E-value=27 Score=16.99 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.7
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+..++.++|+..|.+
T Consensus 13 iLgl~~~a~~~eIk~ayr~ 31 (73)
T 2och_A 13 VLGVKPDASDNELKKAYRK 31 (73)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 4578999999999988754
No 233
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.34 E-value=27 Score=17.19 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.1
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
|-+|+..++.++|+..|.+.
T Consensus 12 iLgv~~~as~~eIk~ayr~l 31 (78)
T 2ctp_A 12 ILGVSRGASDEDLKKAYRRL 31 (78)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 35789999999999988653
No 234
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.01 E-value=28 Score=17.17 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=16.2
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
|-+|+.+++.++|+..|.+.
T Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (79)
T 2dn9_A 12 ILGVPRNASQKEIKKAYYQL 31 (79)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45789999999999988653
No 235
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=36.42 E-value=32 Score=15.23 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHHHhcC
Q psy7530 23 SAPTTLEDVKNYFEQF 38 (60)
Q Consensus 23 ~~~~~e~~l~~~F~~f 38 (60)
-.+++.++|+..|.+.
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3567899999999876
No 236
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.51 E-value=18 Score=23.06 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=22.1
Q ss_pred cceEEEeCCCCCC----CHHHHHHHHhcCCceeEEEE
Q psy7530 14 TKKIFVGGLSAPT----TLEDVKNYFEQFGPVYYTAC 46 (60)
Q Consensus 14 ~~klfVg~L~~~~----~e~~l~~~F~~fG~V~~v~i 46 (60)
..--++|||..-. .-..+.+...+||.|..+.+
T Consensus 14 ~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~ 50 (494)
T 3swz_A 14 LSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRM 50 (494)
T ss_dssp BCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEE
T ss_pred CCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEe
Confidence 3445889976322 13567888889999976643
No 237
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=34.25 E-value=21 Score=18.83 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=14.9
Q ss_pred CCHHHHHHHHhcCCceeE
Q psy7530 26 TTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 26 ~~e~~l~~~F~~fG~V~~ 43 (60)
.+++.+++.|++.|.|..
T Consensus 4 ~~~~~i~e~l~~lg~i~~ 21 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKS 21 (105)
T ss_dssp THHHHHHHHHGGGSCCEE
T ss_pred hHHHHHHHHHhccCCceE
Confidence 467789999999999864
No 238
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.86 E-value=33 Score=16.99 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.5
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
|-+|+..++.++|+..|.+.
T Consensus 14 iLgv~~~as~~eIk~ayr~l 33 (82)
T 2ej7_A 14 VLDVPRQASSEAIKKAYRKL 33 (82)
T ss_dssp HTTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 46789999999999988653
No 239
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=33.83 E-value=19 Score=18.43 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=17.7
Q ss_pred EeCCCCCCCHHHHHHHHhcCC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~fG 39 (60)
|-+|++.++.++|+..|-+.-
T Consensus 21 iLgv~~~as~~eIk~aYr~l~ 41 (94)
T 1wjz_A 21 ILGADPSANMSDLKQKYQKLI 41 (94)
T ss_dssp HTTCCTTCCHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHH
Confidence 568999999999999987653
No 240
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.46 E-value=18 Score=18.92 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=16.4
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|++.++.++|+..|.+
T Consensus 22 vLgv~~~as~~eIk~ayr~ 40 (99)
T 2yua_A 22 LLGVPSTATQAQIKAAYYR 40 (99)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 5789999999999998854
No 241
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=32.59 E-value=24 Score=19.75 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=17.9
Q ss_pred eCCCCCCCHHHHHHHHhcCC
Q psy7530 20 GGLSAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~fG 39 (60)
|.|+..++|++|.++.++.-
T Consensus 80 Gqi~~kItee~Lk~lL~~i~ 99 (118)
T 2cru_A 80 GQLSEKVSEQGLIEILKKVS 99 (118)
T ss_dssp TCCCSCBCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 67899999999999999874
No 242
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.59 E-value=35 Score=17.28 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=15.5
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+..++.++|+..|.+
T Consensus 12 iLgv~~~as~~eIk~ayr~ 30 (88)
T 2ctr_A 12 ILGVPKSASERQIKKAFHK 30 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHH
Confidence 3578899999999988754
No 243
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=31.01 E-value=37 Score=17.19 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=16.6
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q psy7530 19 VGGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~f 38 (60)
|-+|+...+.++|+..|.+.
T Consensus 22 iLgv~~~as~~eIk~ayr~l 41 (88)
T 2cug_A 22 VLGVSRTASQADIKKAYKKL 41 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHHH
Confidence 56789999999999988653
No 244
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=30.38 E-value=20 Score=20.53 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=19.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCceeE
Q psy7530 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYY 43 (60)
Q Consensus 16 klfVg~L~~~~~e~~l~~~F~~fG~V~~ 43 (60)
-+-|=+-|+.... .+-++|++||.|.+
T Consensus 9 ~VtVFGFp~~~~~-~VI~~Fs~~G~IlE 35 (132)
T 3p3d_A 9 AILVFGYPETMAN-QVIAYFQEFGTILE 35 (132)
T ss_dssp EEEEECCCGGGHH-HHHHHHGGGSCBCS
T ss_pred EEEEEecCHHHHH-HHHHHHHhhceEee
Confidence 3555567766544 47779999999965
No 245
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=30.37 E-value=22 Score=18.67 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=15.0
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+..++.++|+..|.+
T Consensus 8 iLgv~~~as~~eIk~ayr~ 26 (103)
T 1bq0_A 8 ILGVSKTAEEREIRKAYKR 26 (103)
T ss_dssp TTSSCSSCCHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHH
Confidence 3568888999999988754
No 246
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=29.67 E-value=41 Score=17.17 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.7
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+..++.++|+..|.+
T Consensus 13 iLgv~~~as~~eIk~ayr~ 31 (92)
T 2o37_A 13 LLGVSPSANEQELKKGYRK 31 (92)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 4578999999999988754
No 247
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=28.32 E-value=26 Score=18.45 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=14.8
Q ss_pred eCCCCCCCHHHHHHHHhc
Q psy7530 20 GGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~ 37 (60)
-+|+.+.+.++|+..|.+
T Consensus 8 Lgv~~~as~~eIk~aYr~ 25 (99)
T 2lgw_A 8 LDVPRSASADDIKKAYRR 25 (99)
T ss_dssp SSSCTTSCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 468889999999988754
No 248
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=28.02 E-value=34 Score=19.12 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=16.3
Q ss_pred eCCCCCCCHHHHHHHHhcC
Q psy7530 20 GGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~f 38 (60)
|.|+..+++++|.++.++.
T Consensus 83 Gql~~ki~e~~L~~lL~~i 101 (116)
T 2hvu_A 83 NNVTHKITEAEIVSILNGI 101 (116)
T ss_dssp SCCSSCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788999999999988764
No 249
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.94 E-value=47 Score=16.97 Aligned_cols=19 Identities=11% Similarity=0.343 Sum_probs=15.8
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+...+.++|+..|-+
T Consensus 32 iLgv~~~as~~eIk~aYr~ 50 (90)
T 2ys8_A 32 MLGVKPGASRDEVNKAYRK 50 (90)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHH
Confidence 4678999999999988754
No 250
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=27.78 E-value=35 Score=19.29 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=16.7
Q ss_pred eCCCCCCCHHHHHHHHhcC
Q psy7530 20 GGLSAPTTLEDVKNYFEQF 38 (60)
Q Consensus 20 g~L~~~~~e~~l~~~F~~f 38 (60)
|.|+..++|+.|.++.++.
T Consensus 83 Gql~~kVsE~~Lk~iL~~v 101 (127)
T 2jxn_A 83 NNVTHKITEAEIVSILNGI 101 (127)
T ss_dssp SCCCSCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 7789999999999998765
No 251
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=26.05 E-value=39 Score=17.76 Aligned_cols=22 Identities=18% Similarity=0.529 Sum_probs=14.9
Q ss_pred ceEEEeCCCCCCCH-HHHHHHHhcCC
Q psy7530 15 KKIFVGGLSAPTTL-EDVKNYFEQFG 39 (60)
Q Consensus 15 ~klfVg~L~~~~~e-~~l~~~F~~fG 39 (60)
.++|| +.++.+ ..|++||-.||
T Consensus 20 ~~~~l---~~~v~~~~~l~RyiiAfg 42 (88)
T 3pc7_A 20 VRLYL---PPSTPDFSRLRRYFVAFD 42 (88)
T ss_dssp CEECC---CTTSTTHHHHHHHHHHTT
T ss_pred eEEEc---cCCcCchhhheeeeeecC
Confidence 45666 334444 49999999886
No 252
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.73 E-value=29 Score=18.48 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=16.2
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+..++.++|+..|-+
T Consensus 25 iLgv~~~as~~eIk~ayr~ 43 (112)
T 2ctq_A 25 LLGCDELSSVEQILAEFKV 43 (112)
T ss_dssp HTTCCTTSCHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 5689999999999998864
No 253
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.39 E-value=58 Score=15.83 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.0
Q ss_pred EeCCCC-CCCHHHHHHHHhc
Q psy7530 19 VGGLSA-PTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~-~~~e~~l~~~F~~ 37 (60)
|-+|+. ..+.++|+..|.+
T Consensus 19 iLgl~~~~a~~~eIk~ayr~ 38 (71)
T 2guz_A 19 ILNLTENTLTKKKLKEVHRK 38 (71)
T ss_dssp HTTCCTTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCCHHHHHHHHHH
Confidence 457888 6999999988754
No 254
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.36 E-value=6.2 Score=22.66 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=6.7
Q ss_pred HHHHHHHhcCCcee
Q psy7530 29 EDVKNYFEQFGPVY 42 (60)
Q Consensus 29 ~~l~~~F~~fG~V~ 42 (60)
+|+.+++...|.|.
T Consensus 2 ~~~~~l~~~~G~Vk 15 (148)
T 3ts2_A 2 ADEPQLLHGAGICK 15 (148)
T ss_dssp ----CCEEEEEEEE
T ss_pred CcccccccceeEEE
Confidence 45566666777764
No 255
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.90 E-value=59 Score=17.18 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.0
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|+..++.++|+..|-+
T Consensus 22 vLgv~~~as~~eIk~aYr~ 40 (109)
T 2ctw_A 22 VLGLDKNATSDDIKKSYRK 40 (109)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHH
Confidence 4578999999999998865
No 256
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=23.49 E-value=58 Score=15.71 Aligned_cols=16 Identities=0% Similarity=0.154 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHhcCCc
Q psy7530 25 PTTLEDVKNYFEQFGP 40 (60)
Q Consensus 25 ~~~e~~l~~~F~~fG~ 40 (60)
..++++|++.+-+||-
T Consensus 5 ~Lsd~eLr~~L~~~G~ 20 (53)
T 1jei_A 5 DLSDTELTTLLRRYNI 20 (53)
T ss_dssp TCCHHHHHHHHSSSCC
T ss_pred HcCHHHHHHHHHHhCC
Confidence 4688999999999974
No 257
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.26 E-value=35 Score=17.34 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=15.5
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q psy7530 19 VGGLSAPTTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~~~e~~l~~~F~~ 37 (60)
|-+|++.++.++|+..|.+
T Consensus 14 iLgv~~~as~~eIk~ayr~ 32 (92)
T 2dmx_A 14 VLGVQASASPEDIKKAYRK 32 (92)
T ss_dssp HHTCCTTCCTTHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 4578899999999988754
No 258
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=22.33 E-value=33 Score=14.30 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHhcCCcee
Q psy7530 23 SAPTTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 23 ~~~~~e~~l~~~F~~fG~V~ 42 (60)
|+++.-.--.+-|++||.+.
T Consensus 4 PFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 4 PFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSSTTGGGHHHHCSCSSSCC
T ss_pred ceeEeeEecHHHHHHHhHHh
Confidence 34433333345678888763
No 259
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.08 E-value=54 Score=13.28 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.6
Q ss_pred HHHHHHHhcCC
Q psy7530 29 EDVKNYFEQFG 39 (60)
Q Consensus 29 ~~l~~~F~~fG 39 (60)
..++.+|.++|
T Consensus 15 kqvkklfkkwg 25 (26)
T 1ytr_A 15 KQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 56788888887
No 260
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=21.85 E-value=70 Score=15.94 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=15.0
Q ss_pred EeCCCCC--CCHHHHHHHHhc
Q psy7530 19 VGGLSAP--TTLEDVKNYFEQ 37 (60)
Q Consensus 19 Vg~L~~~--~~e~~l~~~F~~ 37 (60)
|-+|+.. .+.++|+..|-+
T Consensus 16 iLgl~~~~~a~~~eIk~aYr~ 36 (79)
T 1faf_A 16 LLKLPRQLWGDFGRMQQAYKQ 36 (79)
T ss_dssp HHTCCSSSTTCHHHHHHHHHH
T ss_pred HcCCCCCCCCCHHHHHHHHHH
Confidence 3578888 999999988754
No 261
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=21.66 E-value=51 Score=20.11 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.7
Q ss_pred CCHHHHHHHHhcCCcee
Q psy7530 26 TTLEDVKNYFEQFGPVY 42 (60)
Q Consensus 26 ~~e~~l~~~F~~fG~V~ 42 (60)
++++++++.+++||.|+
T Consensus 64 ~~~~~v~~~~~~~g~iD 80 (242)
T 4b79_A 64 TDSQRLQRLFEALPRLD 80 (242)
T ss_dssp TCHHHHHHHHHHCSCCS
T ss_pred CCHHHHHHHHHhcCCCC
Confidence 46789999999999975
No 262
>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structur initiative, northeast structural genomics consortium; 1.60A {Pseudomonas putida} SCOP: b.82.1.14
Probab=21.05 E-value=26 Score=20.70 Aligned_cols=12 Identities=50% Similarity=0.681 Sum_probs=9.4
Q ss_pred HHHHhcCCceeE
Q psy7530 32 KNYFEQFGPVYY 43 (60)
Q Consensus 32 ~~~F~~fG~V~~ 43 (60)
.+.|++||.|.+
T Consensus 11 ~eaFaPfG~VI~ 22 (175)
T 2bdr_A 11 KEAFAQFGDVIE 22 (175)
T ss_dssp HHHHTTTEEEEC
T ss_pred HHHhCCcceEEc
Confidence 358999999854
No 263
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=20.58 E-value=47 Score=19.50 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHhcCC
Q psy7530 23 SAPTTLEDVKNYFEQFG 39 (60)
Q Consensus 23 ~~~~~e~~l~~~F~~fG 39 (60)
|...+.+++.+.|.+||
T Consensus 253 ~~~~~~~~~~~~~~~~~ 269 (269)
T 1cp2_A 253 PKPMTQERLEEILMQYG 269 (269)
T ss_dssp CCCCCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 77889999999999887
No 264
>1xsq_A Ureidoglycolate hydrolase; northeast structural genomics consortium, NESG, structural genomics, protein structure initiative, PSI, ET81, X-RAY; 1.60A {Escherichia coli} SCOP: b.82.1.14 PDB: 1xsr_A 1yqc_A
Probab=20.25 E-value=28 Score=20.42 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.4
Q ss_pred HHHHhcCCceeE
Q psy7530 32 KNYFEQFGPVYY 43 (60)
Q Consensus 32 ~~~F~~fG~V~~ 43 (60)
.+.|++||.|.+
T Consensus 10 ~eaFapfG~vI~ 21 (168)
T 1xsq_A 10 QEAFSAYGDVIE 21 (168)
T ss_dssp HHHHTTTEEEEC
T ss_pred HHHcCCceeEEc
Confidence 358999999854
Done!