RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7530
(60 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 39.6 bits (91), Expect = 3e-06
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+K+F+GGLS TT E ++++FEQ+G +
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTL 33
Score = 27.3 bits (59), Expect = 0.083
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48
KKIFVGG+ T +++YFEQ+G +
Sbjct: 92 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT 131
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 37.3 bits (86), Expect = 8e-06
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
M T + ++VGGL+ + + F FG +
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDI 32
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 36.5 bits (84), Expect = 1e-05
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+++ ++ ++VG LS TT E + F + G +
Sbjct: 2 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM 39
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.1 bits (83), Expect = 2e-05
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
KIFVGGLS T E ++ YF FG V
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 34
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.7 bits (82), Expect = 3e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 7 ISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGP 40
+ + V +T + V GL TT +D+K YF FG
Sbjct: 1 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGE 34
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 35.4 bits (81), Expect = 3e-05
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 17 IFVGGLSAPTTLEDVKNYFEQFGPV--YYTACDRFIFGISPVKNFG 60
+F+ L+ TT E +K F + G + + + G+ FG
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFG 46
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 35.7 bits (82), Expect = 3e-05
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48
T KI V + +++ F FG + +
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK 42
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 35.3 bits (81), Expect = 4e-05
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
+ ++V L T + + F ++G + R
Sbjct: 4 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD 41
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 35.0 bits (80), Expect = 5e-05
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
K+F+GGLS TT E ++ YF QFG V R
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD 35
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 35.4 bits (81), Expect = 5e-05
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG 52
S+ V + + LS T +++K FE + + D G
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKG 54
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 34.4 bits (78), Expect = 8e-05
Identities = 2/44 (4%), Positives = 14/44 (31%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59
+++ T ++++ + V + + + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFA 46
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.3 bits (78), Expect = 9e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGP 40
+ V GLS TT D++ F ++GP
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGP 35
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 34.6 bits (79), Expect = 9e-05
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 6 NISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48
N+S + +F L+A D++++F G V
Sbjct: 10 NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS 52
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 34.7 bits (79), Expect = 9e-05
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
S+ + K++ V + D++ F QFG +
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI 43
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 34.2 bits (78), Expect = 1e-04
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+ V L T ++ F GP+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRI 34
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 34.3 bits (78), Expect = 1e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
+K+F+GGLS TT E ++NY+EQ+G + R
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD 55
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 33.7 bits (77), Expect = 2e-04
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVY 42
++VG L T + F GP+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPIL 28
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 34.0 bits (77), Expect = 2e-04
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
F G L T ED+ F G + + R
Sbjct: 11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG 46
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 33.8 bits (77), Expect = 2e-04
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 7 ISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGP 40
++Q + ++ GG+++ T + ++ F FG
Sbjct: 11 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ 44
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 34.0 bits (77), Expect = 2e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
I+V GL+ TL+D+ ++F+Q G V
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVV 35
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 33.2 bits (75), Expect = 2e-04
Identities = 21/34 (61%), Positives = 23/34 (67%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
KIFVGGLS TT+EDVK+YFEQFG V
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD 34
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.5 bits (76), Expect = 2e-04
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59
+ ++VGGL + + F Q GPV T +
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 54
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 33.1 bits (75), Expect = 3e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGP 40
R ++V GL T ++++ F Q+G
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGR 32
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 33.0 bits (75), Expect = 3e-04
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGP 40
K+ V L + D++ F +FG
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGT 26
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 33.1 bits (75), Expect = 3e-04
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQF 38
+K+F+GGLS TT E ++++FEQ+
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQW 30
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 33.0 bits (75), Expect = 3e-04
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 9 QMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
+ T+ ++FVG L T E+++ FE++G +
Sbjct: 3 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 45
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 33.4 bits (76), Expect = 4e-04
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
+ +++ L T E++ + F ++GP+
Sbjct: 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT 42
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 32.8 bits (74), Expect = 4e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
KKIFVGG+ T +++YFEQ+G +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 34
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.8 bits (74), Expect = 4e-04
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGPV 41
++++VG + T E + ++F +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRL 28
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 32.3 bits (73), Expect = 4e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
K+F+GGLS TT +D+K+YF +FG V
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 31
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.7 bits (74), Expect = 5e-04
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
I V LS T D++ F FG + +
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD 43
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 32.9 bits (75), Expect = 5e-04
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 14 TKKIFVGGLSAPTTLE-DVKNYFEQFGPV 41
++F+G L+ + DV+ F ++G +
Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKI 43
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 32.3 bits (73), Expect = 6e-04
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 8 SQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48
++ K ++V L T+ E ++ F P +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK 42
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 32.0 bits (72), Expect = 7e-04
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 17 IFVGGLSAPTTLEDVKNYFEQFGPVYY 43
IF+G L + + + F FG +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQ 27
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 32.4 bits (73), Expect = 7e-04
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
++F+GG+ E++ +
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVI 33
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 32.0 bits (72), Expect = 8e-04
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISP 55
+ + +++ G TL+D+K + E G V R +
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFK 47
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 32.0 bits (72), Expect = 0.001
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48
+I+VG L +D+++ F ++G +
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 48
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.9 bits (72), Expect = 0.001
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG 52
+ +FVG + T ++++ +F Q+G V +
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRA 43
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 31.6 bits (71), Expect = 0.001
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
K+++G LS T +D++ F
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLP 28
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 31.6 bits (71), Expect = 0.001
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 15 KKIFVGGLSAPTTLEDVKNYFEQFGP 40
+ ++VG LS T + F Q GP
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGP 34
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 31.2 bits (70), Expect = 0.002
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
+ ++FV LS ++ ED++ F +GP+
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID 43
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 30.8 bits (69), Expect = 0.002
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
+ V L T E+ ++ F G + R
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD 37
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 30.8 bits (69), Expect = 0.002
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYY 43
+ IF+ L + + + F FG +
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 37
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 30.1 bits (67), Expect = 0.005
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKN 58
++ V GL + +D+K++ + G V Y + G+
Sbjct: 17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLR 59
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 30.0 bits (67), Expect = 0.005
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
T +++VGGL T+L + F++FG + +
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS 54
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 30.1 bits (67), Expect = 0.005
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
+FV + ++++ F +G + +
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD 42
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 30.1 bits (67), Expect = 0.005
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
++ SQ T KIFVGGL TT ++ YFE FG +
Sbjct: 1 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD 45
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 29.6 bits (66), Expect = 0.006
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYY 43
K+F+GGL + VK FGP+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKA 30
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 29.6 bits (66), Expect = 0.007
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 13 RTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+ ++V G T ++ F FG + +
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM 35
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 29.8 bits (66), Expect = 0.007
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVY 42
K +++ LS T D+ + F +F
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKK 46
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 29.7 bits (66), Expect = 0.008
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 5 INISQMVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
I T++ + GGL + + E+ G V
Sbjct: 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP 57
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.3 bits (65), Expect = 0.009
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 10 MVTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
M + K+FVGGLS T + ++ F ++G + +
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE 42
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.3 bits (65), Expect = 0.011
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG 52
F+G L T E +K +F
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNP 53
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 29.1 bits (64), Expect = 0.012
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGIS 54
T +F+G L+ ++ ++K + A G +
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTN 53
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 29.2 bits (65), Expect = 0.013
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPV 41
+ +I V L P TL+ + F +FG V
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTV 34
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.9 bits (64), Expect = 0.014
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVY-YTACDRFIFGISPVKNFG 60
+F+ L +D+ F FG V +S F
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 65
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 28.6 bits (63), Expect = 0.021
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQF 38
VT K +F+ LS + E + +QF
Sbjct: 5 VTEGKTVFIRNLSFDSEEEALGEVLQQF 32
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 27.9 bits (61), Expect = 0.030
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 11 VTRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
V + +FV GLS +V E FG
Sbjct: 5 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINN 45
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.033
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTAC 46
+ + I V L + ++V + + + Y
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD 37
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 27.7 bits (61), Expect = 0.036
Identities = 4/46 (8%), Positives = 14/46 (30%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNF 59
I++ L+ +++K + D + ++
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQ 48
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 27.9 bits (61), Expect = 0.039
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
+ + V + ++ FE++GP+
Sbjct: 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE 79
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.4 bits (60), Expect = 0.054
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
+ +FVG + T E +K+ F + GPV
Sbjct: 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE 45
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 26.7 bits (58), Expect = 0.079
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
+ +F+ L T + F QF
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRH 45
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 26.6 bits (58), Expect = 0.082
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 15 KKIFVGGLSAPTTLED-VKNYFEQFGPVYYTACDRFIFGISPVKNF 59
++I + LS E+ ++ FE FG + S
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 50
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 27.1 bits (59), Expect = 0.084
Identities = 4/37 (10%), Positives = 8/37 (21%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48
+ + + T DV + E
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVL 42
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.6 bits (58), Expect = 0.093
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
+ + + + + ED+K F G V
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 47
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 26.4 bits (57), Expect = 0.10
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPV 41
+ V L V YF+ GP+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPI 27
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 26.3 bits (57), Expect = 0.11
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
+++ GL TT +D+ + +G + T
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT 35
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 26.4 bits (57), Expect = 0.13
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
++ V GL + +D+K++ + G V Y R
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 35
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 26.3 bits (57), Expect = 0.13
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFGISPVKNFG 60
+++ L ++++N + FG V T R G S F
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFA 64
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 26.2 bits (57), Expect = 0.15
Identities = 3/29 (10%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 14 TKKIFVGGL-SAPTTLEDVKNYFEQFGPV 41
+ + + + E FG +
Sbjct: 8 RRVVHIMDFQRGKNLRYQLLQLVEPFGVI 36
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.2 bits (54), Expect = 0.32
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIF 51
++ + + L T +V FG V +
Sbjct: 8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN 45
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 24.5 bits (53), Expect = 0.57
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQFGPVYY 43
+ V G + + F Q+G +
Sbjct: 6 WVTVFGFP-QASASYILLQFAQYGNILK 32
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 24.7 bits (53), Expect = 0.62
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRF 49
T + + GL T D+ N+F P+
Sbjct: 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP 50
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 24.1 bits (51), Expect = 0.94
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQFGP---VYYTACDRFIFGIS 54
I L A T +++ F +FG V
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEF 53
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 23.7 bits (50), Expect = 0.97
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 17 IFVGGLSAPTTLEDVKNYFEQFGPVYYTACDRFIFG 52
I + GL T ++V + + Y
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTA 36
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme
disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 291
Score = 24.0 bits (52), Expect = 1.2
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 21 GLSAPTTLEDVKNYFE 36
G + DVK YF
Sbjct: 9 GFKSDPKKSDVKTYFT 24
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 23.6 bits (51), Expect = 1.2
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 18 FVGGLSAPTTLEDVKNYFEQFG 39
F G ++ T E Y F
Sbjct: 6 FPGDVAPKTDKELAVQYLNTFY 27
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 23.6 bits (50), Expect = 1.3
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 14 TKKIFVGGLSAPTTLEDVKNYFEQF 38
+ + V GL D+ E+F
Sbjct: 15 SPVVHVRGLCESVVEADLVEALEKF 39
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 23.6 bits (50), Expect = 1.6
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 12 TRTKKIFVGGLSAPTTLEDVKNYFEQFGPVYYTACDR 48
+ + GL + E++ +F V
Sbjct: 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP 49
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 21.5 bits (45), Expect = 7.3
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 16 KIFVGGLSAPTTLEDVKNYFEQF 38
I V + +++++ ++F +
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGY 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.427
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 228,796
Number of extensions: 8107
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 82
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)