BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7532
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M + ++HWHG +Q T MDG FV QCPI+ N F Y F VP GT++YHSH++ Q
Sbjct: 78 MRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF-VVPGQAGTYWYHSHLSTQ 136
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMT 102
DG+ G+F++ +P D L+D D S VI I DW H ++
Sbjct: 137 YCDGLRGAFVVYDPN--DPHLSLYDVDDASTVITIADWYHSLS 177
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M KT T+HWHGL+Q T + DG FV QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKTTTIHWHGLFQHGTNWADGPAFVNQCPIASGNSFLYDF-TVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG+ G ++ +P D A ++D D + VI ++DW H
Sbjct: 116 YCDGLRGPLVVYDPS--DPYASMYDVDDDTTVITLSDWYH 153
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQK 60
M K+ ++HWHG +Q+ T + DG FV QCPI + F Y F + GTF+YHSH++ Q
Sbjct: 57 MLKSTSVHWHGFFQKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQY 116
Query: 61 MDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG G F++ +P D +A L+D D + VI +TDW H
Sbjct: 117 CDGDRGPFVVYDPN--DPSANLYDVDNLNTVITLTDWYH 153
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M KT ++HWHG +Q+ T + DG F+ QCPI F Y F VP GTF+YHSH++ Q
Sbjct: 57 MLKTTSIHWHGFFQKGTNWADGPAFINQCPIASGNSFLYDF-QVPGQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG+ G F++ +P D A L+D D S VI + DW H
Sbjct: 116 YCDGLRGPFVVYDPN--DPHANLYDVDDESTVITLADWYH 153
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M K+ ++HWHG +Q+ T + DG F+ QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDF-QVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
DG+ G F++ +P D A L+D D VI + DW H + + P F +
Sbjct: 116 YCDGLRGPFVVYDPN--DPAADLYDVDNDDTVITLVDWYH-VAAKLGPAFPLG-----AD 167
Query: 120 TYLINGK 126
LINGK
Sbjct: 168 ATLINGK 174
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M K+ ++HWHG +Q T + DG FV QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDF-HVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG+ G F++ +P+ D A +D D S VI +TDW H
Sbjct: 116 YCDGLRGPFVVYDPK--DPHASRYDVDNESTVITLTDWYH 153
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M KT ++HWHG +Q+ T + DG FV QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKTSSIHWHGFFQQGTNWADGPAFVNQCPIASGHSFLYDF-QVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG+ G F++ +P D A L+D D VI + DW H
Sbjct: 116 YCDGLRGPFVVYDPN--DPHASLYDIDNDDTVITLADWYH 153
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M K+ ++HWHG +Q T + DG FV QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG+ G ++ +P D A L+D D S VI + DW H
Sbjct: 116 YCDGLRGPIVVYDPN--DPHASLYDVDDDSTVITLADWYH 153
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M K+ ++HWHG +Q T + DG FV QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG+ G ++ +P D A L+D D S VI + DW H
Sbjct: 116 YCDGLRGPIVVYDPN--DPHASLYDVDDDSTVITLADWYH 153
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 15/129 (11%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M K+ ++HWHG +Q T + DG F+ QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMT--DEKYPGFLRTNTGNF 117
DG+ G F++ +P D A +D D VI + DW H ++PG
Sbjct: 116 YCDGLRGPFVVYDPN--DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGA------- 166
Query: 118 PETYLINGK 126
+ LINGK
Sbjct: 167 -DATLINGK 174
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 15/129 (11%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M K+ ++HWHG +Q T + DG F+ QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMT--DEKYPGFLRTNTGNF 117
DG+ G F++ +P D A +D D VI + DW H ++PG
Sbjct: 116 YCDGLRGPFVVYDPN--DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGA------- 166
Query: 118 PETYLINGK 126
+ LINGK
Sbjct: 167 -DATLINGK 174
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 69/127 (54%), Gaps = 11/127 (8%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M KT ++HWHG +Q+ T + DG F+ QCPI F Y F VP+ GTF+YHSH++ Q
Sbjct: 57 MLKTTSVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDF-QVPNQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
DG+ G F++ +P D A +D D I + DW H + P F N +
Sbjct: 116 YCDGLRGPFVVYDPN--DPHASRYDVDNDDTTITLADWYHTAA-KLGPAFP-----NGAD 167
Query: 120 TYLINGK 126
+ LINGK
Sbjct: 168 STLINGK 174
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDGI 64
++HWHG +Q+ T + DG F+TQCPI+ F Y F VP GT++YHSH+ Q DG+
Sbjct: 63 SIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNF-NVPGMAGTYWYHSHLTTQYCDGL 121
Query: 65 EGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPG 108
G F++ +P D A L+D D + +I + DW H + E G
Sbjct: 122 RGPFVVYDPN--DPDANLYDVDDDTTIITLADWYHVLAKEMGAG 163
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M K+ ++HWHG +Q T + DG FV QCPI F Y F VPD GTF+YHSH++ Q
Sbjct: 57 MLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLH 99
DG+ G ++ +P+ K+ L+D D S VI + DW H
Sbjct: 116 YCDGLRGPIVVYDPQDPHKS--LYDVDDDSTVITLADWYH 153
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 68/129 (52%), Gaps = 15/129 (11%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQ 59
M KT ++HWHG +Q+ T + DG F+ QCPI F Y F VP+ GTF+YHSH++ Q
Sbjct: 57 MLKTTSVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDF-QVPNQAGTFWYHSHLSTQ 115
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMT--DEKYPGFLRTNTGNF 117
DG+ G F++ +P D A +D D VI + DW H ++P
Sbjct: 116 YCDGLRGPFVVYDPN--DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPAGA------- 166
Query: 118 PETYLINGK 126
+ LINGK
Sbjct: 167 -DATLINGK 174
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKF-PAVPDGTFFYHSHIALQK 60
M + ++HWHGL+QR T + DG V QCPI F YKF PA GTF+YHSH Q
Sbjct: 57 MLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQY 116
Query: 61 MDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPET 120
DG+ G +I + D A L+D D + +I + DW H + G + P+
Sbjct: 117 CDGLRGPMVIYDDN--DPHAALYDEDDENTIITLADWYH-IPAPSIQGAAQ------PDA 167
Query: 121 YLINGK 126
LINGK
Sbjct: 168 TLINGK 173
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKF-PAVPDGTFFYHSHIALQK 60
M + ++HWHGL+QR T + DG V QCPI F YKF PA GTF+YHSH Q
Sbjct: 57 MLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQY 116
Query: 61 MDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPET 120
DG+ G +I + D A L+D D + +I + DW H + G + P+
Sbjct: 117 CDGLRGPMVIYDDN--DPHAALYDEDDENTIITLADWYH-IPAPSIQGAAQ------PDA 167
Query: 121 YLINGK 126
LINGK
Sbjct: 168 TLINGK 173
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 4 KTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDG 63
+ V +HWHG+ QR TP+ DG ++QC I F Y F GTFFYH H+ +Q+ G
Sbjct: 55 EGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAG 114
Query: 64 IEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTG--NFPETY 121
+ GS I+ P+ K P YD + ++++DW H ++ G P+T
Sbjct: 115 LYGSLIVDPPQG--KKEPF-HYDGEIN-LLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTI 170
Query: 122 LINGK 126
L+NG+
Sbjct: 171 LLNGR 175
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEG 66
++HWHG+ Q + DGV VTQCPI YKF GT +YHSH +LQ DG+ G
Sbjct: 122 SIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFG 181
Query: 67 SFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKY 106
II P + DYD VI + DW H+ E +
Sbjct: 182 PLIINGPATA-------DYDEDVGVIFLQDWAHESVFEIW 214
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEG 66
++HWHG+ Q + DGV VTQCPI YKF GT +YHSH +LQ DG+ G
Sbjct: 122 SIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFG 181
Query: 67 SFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKY 106
II P + DYD VI + DW H+ E +
Sbjct: 182 PLIINGPATA-------DYDEDVGVIFLQDWAHESVFEIW 214
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD-GTFFYHSHIALQ 59
M ++H+HGL+Q T MDGV F+TQCPI + Y F + GT++YHSH Q
Sbjct: 52 MNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQ 111
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLR----TNTG 115
DG++G FII+ D + P +DYD + +++W HD+ + F+ T
Sbjct: 112 YEDGMKGLFIIK-----DDSFP-YDYD-EELSLSLSEWYHDLVTDLTKSFMSVYNPTGAE 164
Query: 116 NFPETYLIN 124
P+ ++N
Sbjct: 165 PIPQNLIVN 173
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFR-YKFPAVPDGTFFYHSHIALQ 59
++ ++HWHG++Q+ T DG VT+CPI R Y++ A GT +YHSH + Q
Sbjct: 85 LVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQ 144
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
+G+ G+ I P S+ YD+ V ITD+ + D+ F + N F +
Sbjct: 145 YGNGVVGTIQINGPASL-------PYDIDLGVFPITDYYYRAADDLV-HFTQNNAPPFSD 196
Query: 120 TYLING 125
LING
Sbjct: 197 NVLING 202
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFR-YKFPAVPDGTFFYHSHIALQ 59
++ ++HWHG++Q+ T DG VT+CPI R Y++ A GT +YHSH + Q
Sbjct: 85 LVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQ 144
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
+G+ G+ I P S+ YD+ V ITD+ + D+ F + N F +
Sbjct: 145 YGNGVVGTIQINGPASL-------PYDIDLGVFPITDYYYRAADDLV-HFTQNNAPPFSD 196
Query: 120 TYLING 125
LING
Sbjct: 197 NVLING 202
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFR-YKFPAVPDGTFFYHSHIALQ 59
++ ++HWHG+ Q+ T DG VT+CPI R Y++ A GT +YHSH + Q
Sbjct: 85 LVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQ 144
Query: 60 KMDGIEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPE 119
+G+ G+ I P S+ YD+ V ITD+ + D+ F + N F +
Sbjct: 145 YGNGVVGTIQINGPASL-------PYDIDLGVFPITDYYYRAADDLV-HFTQNNAPPFSD 196
Query: 120 TYLING 125
LING
Sbjct: 197 NVLING 202
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK---MDG 63
T+HWHG+ QR T DGV TQ I F YKF A P GT +YH H+ + + M G
Sbjct: 57 TIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRG 116
Query: 64 IEGSFII--REPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPG--------FLRTN 113
+ G I+ + P I+KT ++++++DW+ ++ G + N
Sbjct: 117 MWGPLIVEPKNPLPIEKTV------TKDYILMLSDWVSSWANKPGEGGIPGDVFDYYTIN 170
Query: 114 TGNFPETYLINGK 126
+FPET I K
Sbjct: 171 AKSFPETQPIRVK 183
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPI-LHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
++HWHGL Q F DG VT+CPI + YKF A GT +YHSH + Q +G+
Sbjct: 132 SMHWHGLRQLGNVFNDGANGVTECPIPPKGGRKTYKFRATQYGTSWYHSHFSAQYGNGVV 191
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLING 125
G+ I P S+ YD+ V + D+ + DE F ++N + L NG
Sbjct: 192 GTIQIDGPASL-------PYDIDLGVFPLMDYYYRSADELV-HFTQSNGAPPSDNVLFNG 243
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 7 TLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH---IALQKMDG 63
T+H+HG+++ MDG + I F Y+F A P GT YH H +A G
Sbjct: 89 TIHFHGVHRAT---MDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145
Query: 64 IEGSFIIREPRS 75
+ G FI+ EP+
Sbjct: 146 LYGGFIV-EPKE 156
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTK--FRYKFPAVPDGTFFYHSH---- 55
+ + T+HWHG+ P DG PIL + +R++ P GT++YH H
Sbjct: 100 LKEATTIHWHGV--PVPPDQDGS---PHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYT 154
Query: 56 IALQKMDGIEGSFIIREPRSIDKTAPLWDYDL 87
+ Q G+ G+F+I+ + D + L + DL
Sbjct: 155 ASKQVFMGLAGAFVIKAKK--DALSHLKEKDL 184
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH----IALQKMDG 63
LHWHGL +P +D + P + + + P GTF+YH H +A Q G
Sbjct: 71 LHWHGLP--ISPKVD--DPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAG 126
Query: 64 IEGSFIIREPRSIDKTAPLWDYDLPSHVIIITD 96
+ G+ ++ S+D L + + H++++ D
Sbjct: 127 LLGALVVES--SLDAIPELREAE--EHLLVLKD 155
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 135 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 191
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 192 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 234
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 40 YKFPAVPDGT-FFYHSH-IALQKMD---GIEGSFIIREPRSIDKTAPLWDYDLPSHVIII 94
Y +P G +YH H +AL +++ G+ G++II +P+ P +YD+P ++I
Sbjct: 139 YHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLI 195
Query: 95 TDW-LHDMTDEKYPGFLRTNTGNFP----------ETYLINGK 126
TD +++ YP + + P ET L+NGK
Sbjct: 196 TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK 238
>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|D Chain D, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|D Chain D, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|D Chain D, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|D Chain D, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|D Chain D, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 300
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 191 GTSLNAPYTQFNAFLLYKLEFCPVIRDSHIYQV 223
G+ L P + +N LLY LE P +DS ++Q
Sbjct: 81 GSYLVNPESGYNVSLLYDLENLPASKDSIVHQA 113
>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
pdb|2HF9|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
Length = 226
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 84 DYDLPSH--VIIITDWLHDMTDEKYPGFLRT 112
D+DL +H +++I+ D T EK+PG ++T
Sbjct: 135 DFDLGTHKRIVVISTTEGDDTIEKHPGIMKT 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,161,003
Number of Sequences: 62578
Number of extensions: 284166
Number of successful extensions: 536
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 54
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)