Query psy7532
Match_columns 235
No_of_seqs 185 out of 1418
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:46:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00044 multi-copper oxidase- 100.0 4.4E-48 9.5E-53 363.2 18.8 204 3-212 79-319 (596)
2 PLN02991 oxidoreductase 100.0 2.3E-47 5.1E-52 355.9 17.7 190 3-212 78-299 (543)
3 PLN02354 copper ion binding / 100.0 3.4E-47 7.4E-52 356.3 18.0 196 3-212 77-304 (552)
4 PLN02792 oxidoreductase 100.0 4.3E-47 9.4E-52 354.2 18.1 192 3-212 66-290 (536)
5 PLN02835 oxidoreductase 100.0 1.6E-46 3.5E-51 351.1 18.7 190 3-212 79-299 (539)
6 KOG1263|consensus 100.0 1.9E-46 4.2E-51 349.0 18.2 201 3-217 78-315 (563)
7 PLN02168 copper ion binding / 100.0 4.3E-46 9.3E-51 347.9 18.4 192 3-212 76-302 (545)
8 PLN02191 L-ascorbate oxidase 100.0 3.4E-45 7.5E-50 344.6 20.0 206 1-212 72-325 (574)
9 TIGR03389 laccase laccase, pla 100.0 1.8E-44 3.9E-49 338.6 19.4 201 3-212 53-288 (539)
10 TIGR03390 ascorbOXfungal L-asc 100.0 2.5E-44 5.5E-49 337.1 20.0 201 1-211 57-302 (538)
11 TIGR03388 ascorbase L-ascorbat 100.0 7.9E-44 1.7E-48 334.3 20.3 204 2-211 51-301 (541)
12 PLN02604 oxidoreductase 100.0 1.4E-42 3E-47 327.1 20.1 204 2-211 74-322 (566)
13 TIGR01480 copper_res_A copper- 100.0 1.5E-35 3.2E-40 279.0 19.1 185 3-210 95-352 (587)
14 PRK10965 multicopper oxidase; 100.0 3.8E-31 8.3E-36 246.9 17.1 149 3-171 96-257 (523)
15 PRK10883 FtsI repressor; Provi 100.0 7.2E-29 1.6E-33 229.4 18.1 142 3-166 96-246 (471)
16 TIGR02376 Cu_nitrite_red nitri 100.0 3.9E-29 8.4E-34 220.2 13.1 181 4-212 81-300 (311)
17 PF07732 Cu-oxidase_3: Multico 99.9 1.1E-27 2.3E-32 182.6 6.1 71 3-73 45-116 (117)
18 COG2132 SufI Putative multicop 99.9 2.8E-22 6E-27 185.2 15.5 140 6-167 86-227 (451)
19 PF00394 Cu-oxidase: Multicopp 99.7 6.4E-18 1.4E-22 135.4 9.0 123 88-210 1-159 (159)
20 TIGR03095 rusti_cyanin rusticy 99.6 1.1E-15 2.3E-20 120.9 6.6 68 4-71 75-148 (148)
21 TIGR01480 copper_res_A copper- 99.2 4.1E-11 8.9E-16 113.7 6.3 68 3-71 518-587 (587)
22 PF07731 Cu-oxidase_2: Multico 98.4 2.6E-07 5.6E-12 71.7 3.5 70 3-73 53-137 (138)
23 PF00127 Copper-bind: Copper b 97.8 5.1E-05 1.1E-09 55.8 5.2 37 31-71 63-99 (99)
24 TIGR02656 cyanin_plasto plasto 97.7 6.4E-05 1.4E-09 55.3 4.4 37 31-71 63-99 (99)
25 TIGR03096 nitroso_cyanin nitro 97.0 0.00077 1.7E-08 52.3 3.4 29 29-57 93-121 (135)
26 PRK02710 plastocyanin; Provisi 96.8 0.0021 4.5E-08 48.9 4.4 37 31-71 83-119 (119)
27 PLN02835 oxidoreductase 96.7 0.0037 8E-08 59.5 6.1 42 32-73 473-514 (539)
28 TIGR03389 laccase laccase, pla 96.6 0.0059 1.3E-07 58.1 7.2 42 32-73 481-522 (539)
29 PRK02888 nitrous-oxide reducta 96.0 0.01 2.2E-07 56.9 5.1 41 31-73 592-635 (635)
30 PRK10965 multicopper oxidase; 95.9 0.011 2.4E-07 56.0 4.7 65 4-70 447-522 (523)
31 COG2132 SufI Putative multicop 95.8 0.012 2.6E-07 54.7 4.8 63 4-72 377-450 (451)
32 TIGR03388 ascorbase L-ascorbat 95.8 0.013 2.9E-07 55.7 5.2 40 32-71 485-524 (541)
33 PLN02604 oxidoreductase 95.8 0.016 3.4E-07 55.5 5.5 40 32-71 508-547 (566)
34 TIGR03102 halo_cynanin halocya 95.8 0.016 3.5E-07 43.9 4.4 36 32-71 80-115 (115)
35 PF06525 SoxE: Sulfocyanin (So 95.7 0.022 4.7E-07 46.8 5.2 44 31-74 146-189 (196)
36 TIGR03390 ascorbOXfungal L-asc 95.7 0.018 3.9E-07 54.8 5.4 41 33-73 494-534 (538)
37 TIGR02375 pseudoazurin pseudoa 95.6 0.025 5.5E-07 42.8 4.9 37 33-73 53-89 (116)
38 TIGR03094 sulfo_cyanin sulfocy 95.4 0.028 6E-07 45.6 4.6 43 32-74 146-188 (195)
39 PLN02191 L-ascorbate oxidase 95.2 0.049 1.1E-06 52.3 6.5 42 32-74 508-549 (574)
40 TIGR02657 amicyanin amicyanin. 95.2 0.089 1.9E-06 37.1 6.3 34 32-71 50-83 (83)
41 PRK10883 FtsI repressor; Provi 95.1 0.024 5.2E-07 53.1 4.1 68 5-73 394-470 (471)
42 PF13473 Cupredoxin_1: Cupredo 95.1 0.022 4.7E-07 42.0 3.0 37 30-70 68-104 (104)
43 PLN00044 multi-copper oxidase- 94.2 0.14 3E-06 49.4 6.9 43 32-74 495-537 (596)
44 COG3794 PetE Plastocyanin [Ene 94.2 0.069 1.5E-06 41.1 3.9 37 32-72 90-128 (128)
45 KOG1263|consensus 94.1 0.13 2.8E-06 49.2 6.5 44 32-75 497-540 (563)
46 TIGR02376 Cu_nitrite_red nitri 93.6 0.14 3.1E-06 45.4 5.4 69 4-73 223-298 (311)
47 PLN02168 copper ion binding / 92.9 0.18 3.8E-06 48.2 5.2 43 32-74 477-519 (545)
48 PF07732 Cu-oxidase_3: Multico 92.7 0.22 4.7E-06 37.6 4.6 40 118-170 14-56 (117)
49 PLN02792 oxidoreductase 92.2 0.29 6.4E-06 46.6 5.7 43 32-74 465-507 (536)
50 PLN02354 copper ion binding / 91.3 0.46 1E-05 45.5 6.0 42 32-73 480-521 (552)
51 PLN02991 oxidoreductase 90.2 0.62 1.3E-05 44.5 5.8 42 32-73 472-513 (543)
52 COG4454 Uncharacterized copper 88.5 0.8 1.7E-05 36.3 4.3 43 30-72 116-158 (158)
53 TIGR02695 azurin azurin. Azuri 82.2 2 4.3E-05 32.9 3.6 39 31-70 84-125 (125)
54 COG1622 CyoA Heme/copper-type 82.0 2.5 5.3E-05 36.3 4.6 70 3-74 144-214 (247)
55 PF00116 COX2: Cytochrome C ox 80.1 3.9 8.5E-05 30.9 4.7 40 30-70 78-119 (120)
56 TIGR02866 CoxB cytochrome c ox 73.4 8.5 0.00018 31.7 5.4 69 3-74 124-194 (201)
57 PRK10378 inactive ferrous ion 70.3 6.9 0.00015 35.7 4.4 40 30-74 80-119 (375)
58 TIGR03095 rusti_cyanin rusticy 64.0 15 0.00034 28.8 4.8 29 116-157 39-70 (148)
59 PF07731 Cu-oxidase_2: Multico 62.8 15 0.00033 27.7 4.5 31 141-172 33-66 (138)
60 PF12690 BsuPI: Intracellular 59.6 11 0.00023 26.6 2.8 32 20-52 41-80 (82)
61 MTH00047 COX2 cytochrome c oxi 57.7 47 0.001 27.4 6.8 68 4-74 124-193 (194)
62 PF00394 Cu-oxidase: Multicopp 54.1 22 0.00049 27.8 4.2 50 5-55 82-136 (159)
63 TIGR02656 cyanin_plasto plasto 52.6 21 0.00045 25.8 3.5 16 142-157 17-33 (99)
64 PF10989 DUF2808: Protein of u 44.3 30 0.00064 27.0 3.4 28 29-56 96-127 (146)
65 PF00127 Copper-bind: Copper b 42.4 35 0.00075 24.5 3.3 17 141-157 16-33 (99)
66 PF03684 UPF0179: Uncharacteri 42.1 27 0.00059 27.4 2.8 30 145-175 37-69 (142)
67 cd00918 Der-p2_like Several gr 41.7 33 0.00072 25.9 3.2 23 21-44 65-87 (120)
68 COG1860 Uncharacterized protei 39.1 37 0.00079 26.6 3.1 31 144-174 38-70 (147)
69 COG3794 PetE Plastocyanin [Ene 36.6 45 0.00098 25.6 3.2 18 140-157 52-70 (128)
70 PTZ00047 cytochrome c oxidase 34.6 1.3E+02 0.0028 24.1 5.7 41 32-73 107-149 (162)
71 PF02221 E1_DerP2_DerF2: ML do 34.6 26 0.00057 26.2 1.7 17 28-44 84-100 (134)
72 cd00912 ML The ML (MD-2-relate 34.2 31 0.00068 25.9 2.1 18 28-45 78-95 (127)
73 TIGR03096 nitroso_cyanin nitro 32.7 1.5E+02 0.0032 23.1 5.5 29 141-169 60-92 (135)
74 cd08058 MPN_euk_mb Mpr1p, Pad1 32.6 19 0.00041 26.8 0.6 7 50-56 69-75 (119)
75 PF04744 Monooxygenase_B: Mono 32.0 35 0.00076 31.0 2.2 52 19-72 70-128 (381)
76 PRK01177 hypothetical protein; 31.9 54 0.0012 25.6 3.0 31 145-175 39-71 (140)
77 cd02861 E_set_proteins_like E 31.6 46 0.00099 22.9 2.4 22 22-45 35-56 (82)
78 MTH00129 COX2 cytochrome c oxi 30.0 1.6E+02 0.0035 24.8 5.9 42 32-73 174-216 (230)
79 PF05938 Self-incomp_S1: Plant 29.0 1.2E+02 0.0026 22.1 4.4 42 31-73 30-71 (110)
80 KOG4063|consensus 28.8 59 0.0013 25.8 2.8 25 21-45 94-123 (158)
81 COG2967 ApaG Uncharacterized p 27.7 38 0.00082 25.7 1.5 23 21-44 65-87 (126)
82 MTH00140 COX2 cytochrome c oxi 27.6 1.5E+02 0.0033 24.9 5.3 42 32-73 174-216 (228)
83 PF07177 Neuralized: Neuralize 26.5 61 0.0013 21.9 2.2 39 5-44 1-51 (69)
84 cd00915 MD-1_MD-2 MD-1 and MD- 26.1 59 0.0013 25.1 2.3 18 27-44 80-99 (130)
85 cd00916 Npc2_like Niemann-Pick 25.4 55 0.0012 24.6 2.1 17 28-44 75-91 (123)
86 KOG1554|consensus 24.6 52 0.0011 28.9 1.9 7 49-55 134-140 (347)
87 PF04379 DUF525: Protein of un 23.9 39 0.00085 24.2 0.9 22 21-43 49-70 (90)
88 TIGR01433 CyoA cytochrome o ub 23.7 1.7E+02 0.0038 24.6 5.0 40 33-73 174-215 (226)
89 MTH00098 COX2 cytochrome c oxi 23.4 2.8E+02 0.0061 23.3 6.2 40 33-73 175-216 (227)
90 smart00737 ML Domain involved 23.4 64 0.0014 23.7 2.1 16 29-44 71-86 (118)
91 TIGR01432 QOXA cytochrome aa3 23.4 2E+02 0.0043 23.9 5.2 40 33-73 165-206 (217)
92 COG4263 NosZ Nitrous oxide red 23.1 66 0.0014 30.3 2.4 64 4-71 566-636 (637)
93 cd08067 MPN_2A_DUB Mov34/MPN/P 23.1 35 0.00076 27.9 0.6 6 50-55 83-88 (187)
94 PRK05461 apaG CO2+/MG2+ efflux 22.6 58 0.0013 25.0 1.7 22 21-43 66-87 (127)
95 cd08068 MPN_BRCC36 Mov34/MPN/P 21.0 40 0.00087 28.9 0.6 8 49-56 92-99 (244)
96 TIGR02988 YaaA_near_RecF S4 do 20.6 61 0.0013 20.8 1.3 25 119-154 34-58 (59)
No 1
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4.4e-48 Score=363.17 Aligned_cols=204 Identities=23% Similarity=0.300 Sum_probs=159.4
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC-CCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
+++|||||||++|++++|+|||++ |||||+||++|+|+|++ +|+||||||||++.|+++||+|+|||++++... .
T Consensus 79 ~~~ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~---~ 154 (596)
T PLN00044 79 DEPLLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIP---I 154 (596)
T ss_pred CCCccEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCccccc---c
Confidence 689999999999999999999987 99999999999999999 599999999999999999999999999875432 2
Q ss_pred CCCC-CCCCceEEeeeccccCCCcccccccc-CCCCCCCCEEEEeceecCC--CccCcceeeceeEEEEeCCcEEEE---
Q psy7532 82 LWDY-DLPSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPETYLINGKNNYV--YVSNNYIYVSINYIYVSNNYIYSL--- 154 (235)
Q Consensus 82 ~yd~-d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~~~~pd~~lING~~~~~--~~~~~~~~~~~~~i~v~~GkryRl--- 154 (235)
+|+. |++|.+|+|+||++.+..+. ...+. +.....||++||||++.+. |... ......+.++|++||+|||
T Consensus 155 P~~~~~~~e~~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~-~~~~~~~~i~V~~Gk~yRlRiI 232 (596)
T PLN00044 155 PFGFPDGGDITLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLV-PPGITYERINVDPGKTYRFRVH 232 (596)
T ss_pred cccCCcccceEEEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccc-cCCCccceEEECCCCEEEEEEE
Confidence 3443 22589999999999875542 22222 2334678999999998753 3210 0123446899999999999
Q ss_pred eccC--CCceeeecCCcEE-----------------------EEe-ec-cCccc-CeEEeccCCCCCC-CCCCcceEEEE
Q psy7532 155 NAGD--ASDCADSNSDLVC-----------------------MSH-VN-AQNIR-NYRIPTEPNGTSL-NAPYTQFNAFL 205 (235)
Q Consensus 155 Nag~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~~-~Y~i~~~~~~~~~-~~~~~~~~Ail 205 (235)
|++. ..+|.|+.|.|++ ||+ ++ +|+.+ +||||+.+..+.. .+.+..+.|||
T Consensus 233 Naa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl 312 (596)
T PLN00044 233 NVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAIL 312 (596)
T ss_pred EccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEE
Confidence 9987 5678888888888 577 55 78764 8999998753221 24555668999
Q ss_pred ecCCCCc
Q psy7532 206 LYKLEFC 212 (235)
Q Consensus 206 ~Y~g~~~ 212 (235)
+|+|+..
T Consensus 313 ~Y~~~~~ 319 (596)
T PLN00044 313 HYSNSQG 319 (596)
T ss_pred EECCCCC
Confidence 9999765
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.3e-47 Score=355.92 Aligned_cols=190 Identities=21% Similarity=0.325 Sum_probs=154.2
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC-CCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
+++|+|||||++|.+++|||||++ |||||+||++|+|+|++ +|+||||||||.+.|+++||+|+|||++++... .
T Consensus 78 ~~~ttiHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~---~ 153 (543)
T PLN02991 78 DEPFLISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIP---V 153 (543)
T ss_pred CCCccEEECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccC---c
Confidence 689999999999999999999998 99999999999999999 599999999999999999999999999875432 2
Q ss_pred CCCCCCCCceEEeeeccccCCCcccccccc-CCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---ecc
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAG 157 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag 157 (235)
+++..++|++|+|+||++....+. ...+. +...+.+|++|||||+. ...++|++|||||| |+|
T Consensus 154 p~~~~d~d~~i~l~DW~~~~~~~~-~~~~~~~~~~~~~d~~liNG~~~------------~~~~~v~~G~~yRlRiINa~ 220 (543)
T PLN02991 154 PFPAPADDYTVLIGDWYKTNHKDL-RAQLDNGGKLPLPDGILINGRGS------------GATLNIEPGKTYRLRISNVG 220 (543)
T ss_pred ccccccceeEEEecceecCCHHHH-HHHhhcCCCCCCCCEEEEccCCC------------CceEEECCCCEEEEEEEecc
Confidence 343333579999999999875442 22222 33456899999999964 14799999999999 999
Q ss_pred C--CCceeeecCCcEE-----------------------EEe-ec-cCcccCeEEeccCCCCCCCCCCcceEEEEecCCC
Q psy7532 158 D--ASDCADSNSDLVC-----------------------MSH-VN-AQNIRNYRIPTEPNGTSLNAPYTQFNAFLLYKLE 210 (235)
Q Consensus 158 ~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~~~Y~i~~~~~~~~~~~~~~~~~Ail~Y~g~ 210 (235)
. ...|.|+.|.|++ ||+ ++ +|+.++||||+.+.... ....+.|||+|+|+
T Consensus 221 ~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~---~~~~~~AIl~Y~g~ 297 (543)
T PLN02991 221 LQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS---KILITTGVLHYSNS 297 (543)
T ss_pred CCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC---CCcceEEEEEeCCC
Confidence 7 4567788888877 577 55 89999999999986442 22345799999998
Q ss_pred Cc
Q psy7532 211 FC 212 (235)
Q Consensus 211 ~~ 212 (235)
..
T Consensus 298 ~~ 299 (543)
T PLN02991 298 AG 299 (543)
T ss_pred CC
Confidence 64
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=3.4e-47 Score=356.26 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=156.6
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC-CCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
+++|+|||||++|++++||||+|+ |||||+||++|+|+|++ +|+||||||||++.|+++||+|+|||++++..+ .
T Consensus 77 ~~~ttiHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~---~ 152 (552)
T PLN02354 77 DEPFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIP---V 152 (552)
T ss_pred CCCcccccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCC---C
Confidence 589999999999999999999999 99999999999999998 589999999999999999999999999885422 2
Q ss_pred CCCCCCCCceEEeeeccccCCCcccccccc-CCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---ecc
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAG 157 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag 157 (235)
+|+..++|++|+|+|||+....++ ...+. +...+.||++||||++.+.|. ...+.++|++|||||| |+|
T Consensus 153 p~~~~d~e~~l~l~Dw~~~~~~~~-~~~~~~g~~~~~~d~~liNG~~~~~~~------~~~~~~~v~~Gk~yRlRiINa~ 225 (552)
T PLN02354 153 PYADPEDDYTVLIGDWYTKSHTAL-KKFLDSGRTLGRPDGVLINGKSGKGDG------KDEPLFTMKPGKTYRYRICNVG 225 (552)
T ss_pred CCCCcCceEEEEeeeeccCCHHHH-HHHHhcCCCCCCCCeEEEeCCcCCCCC------CCceEEEECCCCEEEEEEEecC
Confidence 455444689999999999875442 22222 222457899999999764331 1346899999999988 999
Q ss_pred C--CCceeeecCCcEE-----------------------EEe-ec-cCcccCeEEeccCCCCCCCCCCcceEEEEecCCC
Q psy7532 158 D--ASDCADSNSDLVC-----------------------MSH-VN-AQNIRNYRIPTEPNGTSLNAPYTQFNAFLLYKLE 210 (235)
Q Consensus 158 ~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~~~Y~i~~~~~~~~~~~~~~~~~Ail~Y~g~ 210 (235)
. ...|.|+.|.|++ ||+ ++ +|+.++|||++.+.... ......|||+|.|+
T Consensus 226 ~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~---~~~~~~ail~Y~g~ 302 (552)
T PLN02354 226 LKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK---KVLTTTGIIRYEGG 302 (552)
T ss_pred CCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC---CCccEEEEEEECCC
Confidence 7 5667888888887 577 55 78889999999864321 23446899999997
Q ss_pred Cc
Q psy7532 211 FC 212 (235)
Q Consensus 211 ~~ 212 (235)
..
T Consensus 303 ~~ 304 (552)
T PLN02354 303 KG 304 (552)
T ss_pred CC
Confidence 64
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=4.3e-47 Score=354.24 Aligned_cols=192 Identities=24% Similarity=0.328 Sum_probs=154.9
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC-CCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
+++|+|||||++|++++||||+++ |||||+||++|+|+|++ +|+||||||||++.|+++||+|+|||++++..+ .
T Consensus 66 ~~~ttiHWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~---~ 141 (536)
T PLN02792 66 DEPFLLSWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIP---V 141 (536)
T ss_pred CCCcCEeCCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccC---c
Confidence 589999999999999999999987 99999999999999999 599999999999999999999999998764322 2
Q ss_pred CCCCCCCCceEEeeeccccCCCcccccccc-CCC-CCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---ec
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-TNT-GNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NA 156 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~-~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Na 156 (235)
+|+..++|++|+|+||++.....+ ...+. +.. ...+|++||||++.+.| +.|+|++||+||| |+
T Consensus 142 p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~~~g~~~~~~~d~~liNG~~~~~~----------~~~~v~~Gk~yRlRliNa 210 (536)
T PLN02792 142 PFPEPAGDFTFLIGDWYRRNHTTL-KKILDGGRKLPLMPDGVMINGQGVSYV----------YSITVDKGKTYRFRISNV 210 (536)
T ss_pred CCCcccceeEEEecccccCCHHHH-HHHhhccCcCCCCCCEEEEeccCCCCc----------ceEEECCCCEEEEEEEEc
Confidence 344444579999999999876442 22222 222 33889999999987433 6899999999999 99
Q ss_pred cC--CCceeeecCCcEE-----------------------EEe-ec-cCcccCeEEeccCCCCCCCCCCcceEEEEecCC
Q psy7532 157 GD--ASDCADSNSDLVC-----------------------MSH-VN-AQNIRNYRIPTEPNGTSLNAPYTQFNAFLLYKL 209 (235)
Q Consensus 157 g~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~~~Y~i~~~~~~~~~~~~~~~~~Ail~Y~g 209 (235)
|. ...|.|+.|.|++ ||+ ++ +|+.++|||++.+.... .+..+.|||+|.|
T Consensus 211 ~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~---~~~~~~ail~Y~g 287 (536)
T PLN02792 211 GLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA---AKVLVSSTLHYSN 287 (536)
T ss_pred CCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCC---CCCceEEEEEECC
Confidence 97 4577888888887 577 55 78889999999986432 2345679999999
Q ss_pred CCc
Q psy7532 210 EFC 212 (235)
Q Consensus 210 ~~~ 212 (235)
+..
T Consensus 288 ~~~ 290 (536)
T PLN02792 288 SKG 290 (536)
T ss_pred CCC
Confidence 765
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.6e-46 Score=351.10 Aligned_cols=190 Identities=23% Similarity=0.333 Sum_probs=152.2
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC-CCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
+++|||||||++|++++|||||++ |||||+||++|+|+|++ +|+||||||||++.|+++||+|+|||++++..+ .
T Consensus 79 ~~~ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~---~ 154 (539)
T PLN02835 79 DQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIP---I 154 (539)
T ss_pred CCCCcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCC---c
Confidence 689999999999999999999999 99999999999999997 689999999999999999999999998764321 1
Q ss_pred CCCCCCCCceEEeeeccccCCCccccccccCCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---eccC
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAGD 158 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag~ 158 (235)
+|+..++|++|+|+||++....+.......+...+.+|++||||+.. +.++|++|||||| |+|.
T Consensus 155 p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~-------------~~~~v~~G~~yRlRliNa~~ 221 (539)
T PLN02835 155 PFPLPDGDFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQ-------------STFSGDQGKTYMFRISNVGL 221 (539)
T ss_pred CCCCCCceEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccC-------------ceEEECCCCEEEEEEEEcCC
Confidence 34334458999999999998644222212233457899999999976 5799999999999 9997
Q ss_pred --CCceeeecCCcEE-----------------------EEe-ec-cCcccCeEEeccCCCCCCCCCCcceEEEEecCCCC
Q psy7532 159 --ASDCADSNSDLVC-----------------------MSH-VN-AQNIRNYRIPTEPNGTSLNAPYTQFNAFLLYKLEF 211 (235)
Q Consensus 159 --~~~f~i~~h~~~~-----------------------~~~-~~-~q~~~~Y~i~~~~~~~~~~~~~~~~~Ail~Y~g~~ 211 (235)
...|.|+.|.|++ ||+ ++ +|+.++|||++.+.... .+....|||+|.++.
T Consensus 222 ~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~---~~~~~~ail~Y~~~~ 298 (539)
T PLN02835 222 STSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR---QILTATAVLHYSNSR 298 (539)
T ss_pred CccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccC---CCcceEEEEEECCCC
Confidence 4667777788876 577 55 77789999999764322 123457999999975
Q ss_pred c
Q psy7532 212 C 212 (235)
Q Consensus 212 ~ 212 (235)
.
T Consensus 299 ~ 299 (539)
T PLN02835 299 T 299 (539)
T ss_pred C
Confidence 4
No 6
>KOG1263|consensus
Probab=100.00 E-value=1.9e-46 Score=349.04 Aligned_cols=201 Identities=27% Similarity=0.457 Sum_probs=169.2
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCC-CCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~-~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
++|++|||||++|..++|+|| +.+|||||+||++|||+|+++ |.||||||+|+++|+++|++|+|||+++...+ .
T Consensus 78 ~~~~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p---~ 153 (563)
T KOG1263|consen 78 DEPFSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLP---V 153 (563)
T ss_pred CCceEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCC---C
Confidence 689999999999999999999 899999999999999999996 99999999999999999999999999987643 3
Q ss_pred CCCCCCCCceEEeeecccc-CCCccccccccCCCC-CCCCEEEEeceec--CCCccCcceeeceeEEEEeCCcEEEE---
Q psy7532 82 LWDYDLPSHVIIITDWLHD-MTDEKYPGFLRTNTG-NFPETYLINGKNN--YVYVSNNYIYVSINYIYVSNNYIYSL--- 154 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~-~~~~~~~~~~~~~~~-~~pd~~lING~~~--~~~~~~~~~~~~~~~i~v~~GkryRl--- 154 (235)
+++.+++|++|+|+|||++ ....+......+... ..||.++|||++. ++| .+.++|++||+|||
T Consensus 154 pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~---------~~~l~v~pGktY~lRii 224 (563)
T KOG1263|consen 154 PFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC---------TPTLTVEPGKTYRLRII 224 (563)
T ss_pred CCCCCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc---------eeEEEEcCCCEEEEEEE
Confidence 5777778999999999996 554433333333333 3499999999986 444 47999999999999
Q ss_pred eccC--CCceeeecCCcEE-----------------------EEe-ec-cCcccCeEEeccCCCCC--CCCCCcceEEEE
Q psy7532 155 NAGD--ASDCADSNSDLVC-----------------------MSH-VN-AQNIRNYRIPTEPNGTS--LNAPYTQFNAFL 205 (235)
Q Consensus 155 Nag~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~~~Y~i~~~~~~~~--~~~~~~~~~Ail 205 (235)
|+|. +++|+|+.|.|++ +++ ++ +|+.++|||++.+.... ..+ +..+.|||
T Consensus 225 N~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l 303 (563)
T KOG1263|consen 225 NAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGIL 303 (563)
T ss_pred ccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEE
Confidence 9997 7899999999998 466 55 89999999999998552 234 66778999
Q ss_pred ecCCCCcccccC
Q psy7532 206 LYKLEFCPVIRD 217 (235)
Q Consensus 206 ~Y~g~~~~~~~~ 217 (235)
+|.|+..+....
T Consensus 304 ~y~~~~~~~s~~ 315 (563)
T KOG1263|consen 304 RYSGSTHPASEK 315 (563)
T ss_pred EEeCCcccCccc
Confidence 999977776665
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=4.3e-46 Score=347.88 Aligned_cols=192 Identities=24% Similarity=0.357 Sum_probs=150.7
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC-CCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
+++|+|||||++|++++||||||+ |||||+||++|+|+|++ +|+||||||||.+.|+++||+|+|||++++..+ .
T Consensus 76 ~~~ttiHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~---~ 151 (545)
T PLN02168 76 TEPFLMTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVP---V 151 (545)
T ss_pred CCCccEeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccC---c
Confidence 589999999999999999999999 99999999999999999 589999999999999999999999999885432 1
Q ss_pred CCCCCCCCceEEeeeccccCCCccccccccCCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---eccC
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAGD 158 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag~ 158 (235)
++...++|++|+|+||++.+..........+...+.+|++||||++.. .+.++|++|||||| |++.
T Consensus 152 p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~-----------~~~~~v~~G~~yRlRiiNa~~ 220 (545)
T PLN02168 152 PFPKPDEEYDILIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRGPE-----------ETFFAFEPGKTYRLRISNVGL 220 (545)
T ss_pred CcCcccceeeEEEEecCCCCHHHHHhhhhcCCCCCCCCEEEEeccCCC-----------cceEEeCCCCEEEEEEEeccC
Confidence 233334579999999999864332111112233468899999999752 15899999999999 9987
Q ss_pred --CCceeeecCCcEE-----------------------EEe-ec-cCcc----cCeEEeccCCCCCCCCCCcceEEEEec
Q psy7532 159 --ASDCADSNSDLVC-----------------------MSH-VN-AQNI----RNYRIPTEPNGTSLNAPYTQFNAFLLY 207 (235)
Q Consensus 159 --~~~f~i~~h~~~~-----------------------~~~-~~-~q~~----~~Y~i~~~~~~~~~~~~~~~~~Ail~Y 207 (235)
...|.|+.|.|++ ||+ ++ +|+. ++|||++.+..+.. .....|||+|
T Consensus 221 ~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~---~~~~~ail~Y 297 (545)
T PLN02168 221 KTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA---YLGGVALIRY 297 (545)
T ss_pred CceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC---CcceEEEEEE
Confidence 4567777788877 567 44 4443 38999999864432 2345799999
Q ss_pred CCCCc
Q psy7532 208 KLEFC 212 (235)
Q Consensus 208 ~g~~~ 212 (235)
+++..
T Consensus 298 ~~~~~ 302 (545)
T PLN02168 298 PNSPL 302 (545)
T ss_pred CCCCC
Confidence 98744
No 8
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.4e-45 Score=344.60 Aligned_cols=206 Identities=27% Similarity=0.424 Sum_probs=155.2
Q ss_pred CCCCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccCCCCCCC
Q psy7532 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTA 80 (235)
Q Consensus 1 ~~~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~ 80 (235)
|++++|+|||||+++++++|+||+|++|||||+||++|+|+|+++|+||||||||++.|+++||+|+|||+++....
T Consensus 72 l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~--- 148 (574)
T PLN02191 72 LTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPK--- 148 (574)
T ss_pred CCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCC---
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999764321
Q ss_pred CCCCCCCCCceEEeeeccccCCCcccccccc-C-CCCCCCCEEEEeceecCCCccC-----------cc----eeeceeE
Q psy7532 81 PLWDYDLPSHVIIITDWLHDMTDEKYPGFLR-T-NTGNFPETYLINGKNNYVYVSN-----------NY----IYVSINY 143 (235)
Q Consensus 81 ~~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~-~~~~~pd~~lING~~~~~~~~~-----------~~----~~~~~~~ 143 (235)
.++.+| +|++|+|+||+|....+....... . ....++|++||||++.+.|... |. ..+....
T Consensus 149 ~~~~~d-~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~ 227 (574)
T PLN02191 149 ERLRYD-GEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQT 227 (574)
T ss_pred CCCCCC-eeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceE
Confidence 124444 478999999999864322111111 0 1125789999999999888421 00 0123347
Q ss_pred EEEeCCcEEEE---eccC--CCceeeecCCcEE-----------------------EEe-ec-cCcc-cCeEEeccCCCC
Q psy7532 144 IYVSNNYIYSL---NAGD--ASDCADSNSDLVC-----------------------MSH-VN-AQNI-RNYRIPTEPNGT 192 (235)
Q Consensus 144 i~v~~GkryRl---Nag~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~-~~Y~i~~~~~~~ 192 (235)
++|++|||||| |+|. ...|.|+.|.|++ ||+ ++ +|.. ++||||+.....
T Consensus 228 ~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~ 307 (574)
T PLN02191 228 LRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGR 307 (574)
T ss_pred EEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEcccc
Confidence 99999999988 9987 4556777777877 577 55 7765 689999987642
Q ss_pred CCCCCCcceEEEEecCCCCc
Q psy7532 193 SLNAPYTQFNAFLLYKLEFC 212 (235)
Q Consensus 193 ~~~~~~~~~~Ail~Y~g~~~ 212 (235)
... .....|||+|.+...
T Consensus 308 ~~~--~~~~~ail~Y~~~~~ 325 (574)
T PLN02191 308 KPN--TTQALTILNYVTAPA 325 (574)
T ss_pred CCC--CCCceEEEEECCCCC
Confidence 211 222359999988654
No 9
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.8e-44 Score=338.61 Aligned_cols=201 Identities=24% Similarity=0.340 Sum_probs=155.0
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC-CCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA-VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
+++|||||||++|.+++|+||+|++|||||+||++|+|+|++ +|+||||||||...|+ +||+|+|||++++..+ .
T Consensus 53 ~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~---~ 128 (539)
T TIGR03389 53 QYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVP---Y 128 (539)
T ss_pred CCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCC---C
Confidence 579999999999999999999999999999999999999999 5999999999998776 4999999999875422 1
Q ss_pred CCCCCCCCceEEeeeccccCCCcccccccc-CCCCCCCCEEEEeceec--CCCccCcceeeceeEEEEeCCcEEEE---e
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-TNTGNFPETYLINGKNN--YVYVSNNYIYVSINYIYVSNNYIYSL---N 155 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~~~~~~pd~~lING~~~--~~~~~~~~~~~~~~~i~v~~GkryRl---N 155 (235)
+++..++|++|+|+||++....+.+..... +..+..+|++|||||.. +.|.. .....|+|++|||||| |
T Consensus 129 ~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~-----~~~~~i~v~~G~~~RlRlIN 203 (539)
T TIGR03389 129 PFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSS-----KDTFKLTVEPGKTYLLRIIN 203 (539)
T ss_pred CCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCC-----CCceEEEECCCCEEEEEEEe
Confidence 233334689999999999876543322222 22345789999999964 45532 2346899999999988 9
Q ss_pred ccCC--CceeeecCCcEE-----------------------EEe-ec-cCcccCeEEeccCCC-CCCCCCCcceEEEEec
Q psy7532 156 AGDA--SDCADSNSDLVC-----------------------MSH-VN-AQNIRNYRIPTEPNG-TSLNAPYTQFNAFLLY 207 (235)
Q Consensus 156 ag~~--~~f~i~~h~~~~-----------------------~~~-~~-~q~~~~Y~i~~~~~~-~~~~~~~~~~~Ail~Y 207 (235)
+|.. ..|.|+.|.|++ ||+ ++ +|+.++||||+.+.. |...+......|||+|
T Consensus 204 a~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y 283 (539)
T TIGR03389 204 AALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQY 283 (539)
T ss_pred ccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEE
Confidence 9864 445666677776 577 55 788899999998863 3222344556899999
Q ss_pred CCCCc
Q psy7532 208 KLEFC 212 (235)
Q Consensus 208 ~g~~~ 212 (235)
.++..
T Consensus 284 ~~~~~ 288 (539)
T TIGR03389 284 KGTSN 288 (539)
T ss_pred CCCCC
Confidence 98654
No 10
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.5e-44 Score=337.09 Aligned_cols=201 Identities=27% Similarity=0.416 Sum_probs=152.4
Q ss_pred CCCCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeC--CCCeeeeeecccchhhhcCceeEEEEeccCCCCC
Q psy7532 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPA--VPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDK 78 (235)
Q Consensus 1 ~~~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~--~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p 78 (235)
|.+++|+|||||++|++++||||+|++|||||+||++|+|+|++ .|+||||||||.+.|+. ||+|+|||++++..
T Consensus 57 L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~-- 133 (538)
T TIGR03390 57 IPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP-- 133 (538)
T ss_pred CCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--
Confidence 34689999999999999999999999999999999999999998 48999999999999987 59999999987432
Q ss_pred CCCCCCCCCCCceEEeeeccccCCCccccccccCC--CCCCCCEEEEeceecCCCcc---CcceeeceeEEEEeCCcEEE
Q psy7532 79 TAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTN--TGNFPETYLINGKNNYVYVS---NNYIYVSINYIYVSNNYIYS 153 (235)
Q Consensus 79 ~~~~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~--~~~~pd~~lING~~~~~~~~---~~~~~~~~~~i~v~~GkryR 153 (235)
++++| +|++|+|+||++....++........ ...+++++|||||+.+.|.. +....|..+.++|++||+||
T Consensus 134 ---~~~~d-~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yR 209 (538)
T TIGR03390 134 ---PYKYD-DERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYR 209 (538)
T ss_pred ---CCCcc-CcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEE
Confidence 35555 47999999999988654322222211 13567999999997644311 01112345789999999998
Q ss_pred E---eccCC--CceeeecCC-cEE-----------------------EEe-ec-cCc-------ccCeEEeccCCCCCCC
Q psy7532 154 L---NAGDA--SDCADSNSD-LVC-----------------------MSH-VN-AQN-------IRNYRIPTEPNGTSLN 195 (235)
Q Consensus 154 l---Nag~~--~~f~i~~h~-~~~-----------------------~~~-~~-~q~-------~~~Y~i~~~~~~~~~~ 195 (235)
| |+|.. ..|.|+.|. |++ ||+ ++ +|+ .++||||+.+....
T Consensus 210 lRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~-- 287 (538)
T TIGR03390 210 LRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP-- 287 (538)
T ss_pred EEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC--
Confidence 8 99974 456777778 877 577 54 554 48999999875431
Q ss_pred CCCcceEEEEecCCCC
Q psy7532 196 APYTQFNAFLLYKLEF 211 (235)
Q Consensus 196 ~~~~~~~Ail~Y~g~~ 211 (235)
......|||+|.|+.
T Consensus 288 -~~~~~~aiL~Y~~~~ 302 (538)
T TIGR03390 288 -KVYRGYAVLRYRSDK 302 (538)
T ss_pred -CcceEEEEEEeCCCC
Confidence 122357999997654
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=7.9e-44 Score=334.28 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=155.7
Q ss_pred CCCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 2 ~~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
.+++|+|||||+++.+++||||++++|||+|+||++|+|+|+++|+||||||||.+.|+++||+|+|||+++.... .
T Consensus 51 ~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~ 127 (541)
T TIGR03388 51 HTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEK---E 127 (541)
T ss_pred CCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCC---C
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999885422 2
Q ss_pred CCCCCCCCceEEeeeccccCCCcccccccc-C-CCCCCCCEEEEeceecCCCccC----------cc----eeeceeEEE
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLR-T-NTGNFPETYLINGKNNYVYVSN----------NY----IYVSINYIY 145 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~-~-~~~~~pd~~lING~~~~~~~~~----------~~----~~~~~~~i~ 145 (235)
++++| +|++|+|+||++....+....... . ....+||++||||++++.|... |. ..+....|+
T Consensus 128 p~~~d-~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (541)
T TIGR03388 128 PFHYD-GEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILH 206 (541)
T ss_pred Ccccc-ceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEE
Confidence 45555 489999999999876432221111 1 1125789999999999887432 10 112335699
Q ss_pred EeCCcEEEE---eccC--CCceeeecCCcEE-----------------------EEe-ec-cCcc-cCeEEeccCCCCCC
Q psy7532 146 VSNNYIYSL---NAGD--ASDCADSNSDLVC-----------------------MSH-VN-AQNI-RNYRIPTEPNGTSL 194 (235)
Q Consensus 146 v~~GkryRl---Nag~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~-~~Y~i~~~~~~~~~ 194 (235)
|++|||||| |++. ...|.|+.|.|++ ||+ ++ +|.. ++||||+......
T Consensus 207 v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~- 285 (541)
T TIGR03388 207 VEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK- 285 (541)
T ss_pred ECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC-
Confidence 999999998 9886 4555666677776 577 55 6655 5899999876541
Q ss_pred CCCCcceEEEEecCCCC
Q psy7532 195 NAPYTQFNAFLLYKLEF 211 (235)
Q Consensus 195 ~~~~~~~~Ail~Y~g~~ 211 (235)
.......|||+|.+..
T Consensus 286 -~~~~~~~aiL~Y~~~~ 301 (541)
T TIGR03388 286 -PNTPPGLTVLNYYPNS 301 (541)
T ss_pred -CCCccEEEEEEECCCC
Confidence 1223457999998854
No 12
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.4e-42 Score=327.11 Aligned_cols=204 Identities=30% Similarity=0.452 Sum_probs=156.3
Q ss_pred CCCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCC
Q psy7532 2 MGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAP 81 (235)
Q Consensus 2 ~~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~ 81 (235)
.+++|+|||||+++.+++|+||++++|||+|+||++++|+|+++++||||||||...|+.+||+|+|||++++... .
T Consensus 74 ~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~ 150 (566)
T PLN02604 74 LTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKS---E 150 (566)
T ss_pred CCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCC---C
Confidence 4689999999999998899999999999999999999999999999999999999999999999999999885422 2
Q ss_pred CCCCCCCCceEEeeeccccCCCccccccccC--CCCCCCCEEEEeceecCCCccC---------cc---eeeceeEEEEe
Q psy7532 82 LWDYDLPSHVIIITDWLHDMTDEKYPGFLRT--NTGNFPETYLINGKNNYVYVSN---------NY---IYVSINYIYVS 147 (235)
Q Consensus 82 ~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~~--~~~~~pd~~lING~~~~~~~~~---------~~---~~~~~~~i~v~ 147 (235)
++++| +|.+|+|+||++....+........ ....++|++||||++++.|... |. ..+....++|+
T Consensus 151 p~~~d-~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 229 (566)
T PLN02604 151 PFSYD-YDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVV 229 (566)
T ss_pred ccccC-cceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEec
Confidence 35554 3689999999998764432221110 1124789999999999888521 11 11244689999
Q ss_pred CCcEEEE---eccC--CCceeeecCCcEE-----------------------EEe-ec-cCcc-cCeEEeccCCCCCCCC
Q psy7532 148 NNYIYSL---NAGD--ASDCADSNSDLVC-----------------------MSH-VN-AQNI-RNYRIPTEPNGTSLNA 196 (235)
Q Consensus 148 ~GkryRl---Nag~--~~~f~i~~h~~~~-----------------------~~~-~~-~q~~-~~Y~i~~~~~~~~~~~ 196 (235)
+|||||| |+|. ...|.|+.|.|++ ||+ ++ +|.. ++||||+.......
T Consensus 230 ~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~-- 307 (566)
T PLN02604 230 PGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN-- 307 (566)
T ss_pred CCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC--
Confidence 9999999 9987 4556666777777 577 55 6765 58999988654321
Q ss_pred CCcceEEEEecCCCC
Q psy7532 197 PYTQFNAFLLYKLEF 211 (235)
Q Consensus 197 ~~~~~~Ail~Y~g~~ 211 (235)
......|||+|.+..
T Consensus 308 ~~~~~~aIL~Y~~~~ 322 (566)
T PLN02604 308 TTPPGLAIFNYYPNH 322 (566)
T ss_pred CCcceeEEEEECCCC
Confidence 123457999999743
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.5e-35 Score=278.99 Aligned_cols=185 Identities=23% Similarity=0.349 Sum_probs=134.6
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPL 82 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~~ 82 (235)
+++|+|||||+.+++ ++||+|++|||+|+||++|+|+|++.++||||||||...|+.+||+|+|||++++.. +
T Consensus 95 ~~~tsiHwHGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~-----p 167 (587)
T TIGR01480 95 PEDTSIHWHGILLPF--QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPD-----P 167 (587)
T ss_pred CCCceEEcCCCcCCc--cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCCccc-----c
Confidence 589999999999864 699999999999999999999999999999999999999999999999999876432 3
Q ss_pred CCCCCCCceEEeeeccccCCCcccccc-----------------c-----cCC---------------C-C------CCC
Q psy7532 83 WDYDLPSHVIIITDWLHDMTDEKYPGF-----------------L-----RTN---------------T-G------NFP 118 (235)
Q Consensus 83 yd~d~~e~~l~l~Dw~~~~~~~~~~~~-----------------~-----~~~---------------~-~------~~p 118 (235)
+++| +|++|+|+||++.+..+.+... + .+. . . ...
T Consensus 168 ~~~D-~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~ 246 (587)
T TIGR01480 168 VRAD-REHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGST 246 (587)
T ss_pred CCCC-ceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCcccccccCcc
Confidence 5555 4899999999976543221100 0 000 0 0 011
Q ss_pred CEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---eccCCCceeeecCC--cEE----------------------
Q psy7532 119 ETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAGDASDCADSNSD--LVC---------------------- 171 (235)
Q Consensus 119 d~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag~~~~f~i~~h~--~~~---------------------- 171 (235)
..+||||+.. ....++.|++|+|||| |+|....|.+.+.+ |++
T Consensus 247 ~~~LiNG~~~----------~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGe 316 (587)
T TIGR01480 247 YTYLMNGTTP----------AGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAE 316 (587)
T ss_pred ceEEEcCccC----------CCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcc
Confidence 3488999864 1235789999999999 99987767666654 554
Q ss_pred -EEe-eccCcccCeEEeccCCCCCCCCCCcceEEEEecCCC
Q psy7532 172 -MSH-VNAQNIRNYRIPTEPNGTSLNAPYTQFNAFLLYKLE 210 (235)
Q Consensus 172 -~~~-~~~q~~~~Y~i~~~~~~~~~~~~~~~~~Ail~Y~g~ 210 (235)
||+ ++....+.|+|.+...+. .+...|+|++.+.
T Consensus 317 RyDVlV~~~~~g~~~i~a~~~~~-----~~~~~~~l~~~~~ 352 (587)
T TIGR01480 317 TFDVIVEPTGDDAFTIFAQDSDR-----TGYARGTLAVRLG 352 (587)
T ss_pred eeEEEEecCCCceEEEEEEecCC-----CceEEEEEecCCC
Confidence 455 432233567777765433 2355688888754
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=99.97 E-value=3.8e-31 Score=246.92 Aligned_cols=149 Identities=22% Similarity=0.232 Sum_probs=113.0
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCC-Ceeeeeeccc----chhhhcCceeEEEEeccCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVP-DGTFFYHSHI----ALQKMDGIEGSFIIREPRSID 77 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~-~GT~wYHsH~----~~q~~~Gl~G~iIV~~~~~~~ 77 (235)
+++|+|||||+++++ .+||+| ||+|+||++|+|+|+++| +||||||||. +.|+.+||+|+|||++++...
T Consensus 96 ~~~ttiHwHGl~~~~--~~DG~p---q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~ 170 (523)
T PRK10965 96 PEETTLHWHGLEVPG--EVDGGP---QGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLK 170 (523)
T ss_pred CCCccEEcccccCCC--ccCCCC---CCCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccc
Confidence 579999999999976 499987 899999999999999985 7999999995 799999999999999885432
Q ss_pred CCCCCCCCCCCCceEEeeeccccCCCcccccc--ccCCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE-
Q psy7532 78 KTAPLWDYDLPSHVIIITDWLHDMTDEKYPGF--LRTNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL- 154 (235)
Q Consensus 78 p~~~~yd~d~~e~~l~l~Dw~~~~~~~~~~~~--~~~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl- 154 (235)
.. .+..++..|++|+|+||+++...+..... ........+|.+||||+.. +.+.+ ++++|||
T Consensus 171 ~~-lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~-------------p~~~v-~~~~~RlR 235 (523)
T PRK10965 171 LG-LPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIY-------------PQHAA-PRGWLRLR 235 (523)
T ss_pred cC-CcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCccc-------------ceeec-CCCEEEEE
Confidence 11 11222334799999999998765432111 1112245789999999965 45666 5678888
Q ss_pred --eccCCCceeeec---CCcEE
Q psy7532 155 --NAGDASDCADSN---SDLVC 171 (235)
Q Consensus 155 --Nag~~~~f~i~~---h~~~~ 171 (235)
|+|+++.+.+.+ |.|++
T Consensus 236 liNas~~r~~~l~~~dg~~~~v 257 (523)
T PRK10965 236 LLNGCNARSLNLATSDGRPLYV 257 (523)
T ss_pred EEeccCCceEEEEEcCCceEEE
Confidence 999878877765 44554
No 15
>PRK10883 FtsI repressor; Provisional
Probab=99.96 E-value=7.2e-29 Score=229.43 Aligned_cols=142 Identities=21% Similarity=0.256 Sum_probs=108.4
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCC-Ceeeeeeccc----chhhhcCceeEEEEeccCCCC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVP-DGTFFYHSHI----ALQKMDGIEGSFIIREPRSID 77 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~-~GT~wYHsH~----~~q~~~Gl~G~iIV~~~~~~~ 77 (235)
++||+|||||+++++. .+||++ ++|+||++|+|+|++.| +||||||||. ..|+.+||+|+|||+++.+..
T Consensus 96 ~~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~ 170 (471)
T PRK10883 96 TEPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKS 170 (471)
T ss_pred CCCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccc
Confidence 5899999999999764 577764 68999999999999975 9999999994 469999999999999875432
Q ss_pred CC-CCCCCCCCCCceEEeeeccccCCCccccccccCCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE--
Q psy7532 78 KT-APLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL-- 154 (235)
Q Consensus 78 p~-~~~yd~d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl-- 154 (235)
.. ...|+. .|++|+|+||.++........ ........+|.+||||+.. +.++|++| +|||
T Consensus 171 ~~~p~~~~~--~d~~l~l~D~~~~~~g~~~~~-~~~~~g~~gd~~lvNG~~~-------------p~~~v~~~-~~RlRl 233 (471)
T PRK10883 171 LPIPNHYGV--DDFPVIIQDKRLDNFGTPEYN-EPGSGGFVGDTLLVNGVQS-------------PYVEVSRG-WVRLRL 233 (471)
T ss_pred cCCcccCCC--cceeEEeeeeeeccCCCcccc-ccccCCccCCeeEECCccC-------------CeEEecCC-EEEEEE
Confidence 11 122344 379999999998765432211 1122345789999999975 57899875 6777
Q ss_pred -eccCCCceeeec
Q psy7532 155 -NAGDASDCADSN 166 (235)
Q Consensus 155 -Nag~~~~f~i~~ 166 (235)
|+|+++.|.+.+
T Consensus 234 iNas~~~~~~l~l 246 (471)
T PRK10883 234 LNASNARRYQLQM 246 (471)
T ss_pred EEccCCceEEEEE
Confidence 999878888776
No 16
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.96 E-value=3.9e-29 Score=220.18 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=126.2
Q ss_pred CCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecc----cchhhhcCceeEEEEeccCCCCCC
Q psy7532 4 KTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH----IALQKMDGIEGSFIIREPRSIDKT 79 (235)
Q Consensus 4 ~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH----~~~q~~~Gl~G~iIV~~~~~~~p~ 79 (235)
.++++||||.. ++||++.++| |+||++++|+|+++++|||||||| +..|+.+||+|+|||++++..+
T Consensus 81 ~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~-- 151 (311)
T TIGR02376 81 MPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP-- 151 (311)
T ss_pred CceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc--
Confidence 47899999963 4899888887 999999999999999999999999 5689999999999999874311
Q ss_pred CCCCCCCCCCceEEeeeccccCCCcc---ccccccCCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE--
Q psy7532 80 APLWDYDLPSHVIIITDWLHDMTDEK---YPGFLRTNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL-- 154 (235)
Q Consensus 80 ~~~yd~d~~e~~l~l~Dw~~~~~~~~---~~~~~~~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl-- 154 (235)
+.| +|++|+++||++...... +......+....++.++|||+....+ +.+++++||++||
T Consensus 152 ----~~d-~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~----------~~~~v~~G~~~RlRi 216 (311)
T TIGR02376 152 ----EYD-KEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALT----------GDNALTAGVGERVLF 216 (311)
T ss_pred ----Ccc-eeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCCC----------CCcccccCCcEEEEE
Confidence 233 589999999999764321 11111112346789999999964111 3468999998877
Q ss_pred -eccCCCceeeecCC--cEE-------------------------EEe-ec-cCcccCeEEeccCCCCCCCCCCcceEEE
Q psy7532 155 -NAGDASDCADSNSD--LVC-------------------------MSH-VN-AQNIRNYRIPTEPNGTSLNAPYTQFNAF 204 (235)
Q Consensus 155 -Nag~~~~f~i~~h~--~~~-------------------------~~~-~~-~q~~~~Y~i~~~~~~~~~~~~~~~~~Ai 204 (235)
|++..+.+.+++++ +.+ +++ ++ ++ .+.|++++....... +....|+
T Consensus 217 iNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~---~~g~~~~ 292 (311)
T TIGR02376 217 VHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAF---EKGAAAQ 292 (311)
T ss_pred EcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHH---hCCCEEE
Confidence 99864544333332 222 344 33 34 477888877653311 2225699
Q ss_pred EecCCCCc
Q psy7532 205 LLYKLEFC 212 (235)
Q Consensus 205 l~Y~g~~~ 212 (235)
|+|+|+..
T Consensus 293 i~~~g~~~ 300 (311)
T TIGR02376 293 VKVEGAWN 300 (311)
T ss_pred EEECCCCC
Confidence 99988653
No 17
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.94 E-value=1.1e-27 Score=182.59 Aligned_cols=71 Identities=45% Similarity=0.883 Sum_probs=66.9
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCC-CeeeeeecccchhhhcCceeEEEEecc
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVP-DGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~-~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
++|++|||||+.++..+|+||+++++||+|+||++++|+|++.+ +||||||||...|..+||+|+|||+++
T Consensus 45 ~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 45 DEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 68999999999999988999999999999999999999999987 999999999988888999999999986
No 18
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=2.8e-22 Score=185.17 Aligned_cols=140 Identities=31% Similarity=0.424 Sum_probs=108.2
Q ss_pred eEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccCCCCCCCCCCCC
Q psy7532 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRSIDKTAPLWDY 85 (235)
Q Consensus 6 tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~~~p~~~~yd~ 85 (235)
|+|||||+..+ +.+||++..+|+++.||++++|.|+.+++||||||+|...|+.+||+|++||+++.+. +..+
T Consensus 86 t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~-----~~~~ 158 (451)
T COG2132 86 TSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENSE-----PLGV 158 (451)
T ss_pred ceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCCCCcceEeccCCCchhhcccceeEEEeCCCCC-----CCCC
Confidence 99999998877 4699999999999999999999999999999999999999999999999999988543 3466
Q ss_pred CCCCceEEeeeccccCCCccccccccCCCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCc-EEEE-eccCCCcee
Q psy7532 86 DLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNY-IYSL-NAGDASDCA 163 (235)
Q Consensus 86 d~~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~Gk-ryRl-Nag~~~~f~ 163 (235)
|+ +.++++.+|........+.. ...+.....+..+|||+.. +.+.+..|. |||| |+++++.+.
T Consensus 159 d~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~~-------------p~~~~~~g~~rlRl~n~~~~~~~~ 223 (451)
T COG2132 159 DD-EPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAIL-------------PFKAVPGGVVRLRLLNAGNARTYH 223 (451)
T ss_pred Cc-eEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCcc-------------ceeecCCCeEEEEEEecCCceEEE
Confidence 64 67777788877765443322 2233455678999999654 455555553 6777 999655444
Q ss_pred eecC
Q psy7532 164 DSNS 167 (235)
Q Consensus 164 i~~h 167 (235)
+.+.
T Consensus 224 ~~~~ 227 (451)
T COG2132 224 LALG 227 (451)
T ss_pred EEec
Confidence 4443
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.74 E-value=6.4e-18 Score=135.36 Aligned_cols=123 Identities=24% Similarity=0.324 Sum_probs=91.2
Q ss_pred CCceEEeeeccccCCCccccccccC-----CCCCCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---eccCC
Q psy7532 88 PSHVIIITDWLHDMTDEKYPGFLRT-----NTGNFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAGDA 159 (235)
Q Consensus 88 ~e~~l~l~Dw~~~~~~~~~~~~~~~-----~~~~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag~~ 159 (235)
+|++|+|+||||+.........+.. ..++.||++||||++.++|..........+.+.|++||+||| |+|..
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 3799999999999887765544332 236899999999999999865433445678999999999988 99974
Q ss_pred --CceeeecCCcEE-----------------------EEe-ec-cCcccCeEEeccCC-CCCCCCCCcceEEEEecCCC
Q psy7532 160 --SDCADSNSDLVC-----------------------MSH-VN-AQNIRNYRIPTEPN-GTSLNAPYTQFNAFLLYKLE 210 (235)
Q Consensus 160 --~~f~i~~h~~~~-----------------------~~~-~~-~q~~~~Y~i~~~~~-~~~~~~~~~~~~Ail~Y~g~ 210 (235)
..|.|+.|.|++ ||+ ++ +++.++|||++... .+.....++...|||+|.++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 456666777777 577 55 67799999999732 12223445667899999874
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.61 E-value=1.1e-15 Score=120.92 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=54.1
Q ss_pred CCeEEEeCCcccCCCCCCCCCCCcccCccCCC---C-e--eEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 4 KTVTLHWHGLYQRYTPFMDGVQFVTQCPILHN---T-K--FRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 4 ~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG---~-~--~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
....||+||...+..+.|||++.++||+|.|+ + . .+++|+++++||||||||...|+.+||+|+|||+
T Consensus 75 H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 75 HNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred ccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 34667777766555556999999999999885 1 1 3455555699999999999999999999999995
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.16 E-value=4.1e-11 Score=113.74 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=54.9
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCC--cccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQF--VTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~--vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
..++.|||||+..... ..||... -....|+||++++|+|+++++|+||||||...|...||++.+.|.
T Consensus 518 ~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 518 MMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 4689999999965421 2355321 113689999999999999999999999999999999999999873
No 22
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.38 E-value=2.6e-07 Score=71.67 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=52.8
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCC---------------cccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeE
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQF---------------VTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGS 67 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~---------------vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~ 67 (235)
..+..+|+||....--. .++.+. ..-..|+||+..+.+|+++.+|.|.||||...+...||.+.
T Consensus 53 ~~~Hp~HlHG~~F~vl~-~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~ 131 (138)
T PF07731_consen 53 SMPHPFHLHGHSFQVLG-RGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWLFHCHILEHEDNGMMAV 131 (138)
T ss_dssp TSSEEEEETTSEEEEEE-ETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEEEEESSHHHHHTT-EEE
T ss_pred CCccceEEEeeEEEeee-cCCcccccccccccccccCcccccccccceeEEEEEEEeecceEEEEEEchHHHHhCCCeEE
Confidence 56899999998653110 111111 11125899999999999999999999999999999999999
Q ss_pred EEEecc
Q psy7532 68 FIIREP 73 (235)
Q Consensus 68 iIV~~~ 73 (235)
+.|.+.
T Consensus 132 ~~v~~~ 137 (138)
T PF07731_consen 132 FVVGPQ 137 (138)
T ss_dssp EEECHH
T ss_pred EEEcCC
Confidence 999864
No 23
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.77 E-value=5.1e-05 Score=55.78 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=33.4
Q ss_pred ccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 31 ~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
.+.||++++++|+ ++|+|.|+|- . +...||.|.|+|+
T Consensus 63 ~~~~G~~~~~tF~--~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 63 LLAPGETYSVTFT--KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EBSTTEEEEEEEE--SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred ecCCCCEEEEEeC--CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 4789999999998 7899999998 5 8888999999995
No 24
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.67 E-value=6.4e-05 Score=55.30 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=32.8
Q ss_pred ccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 31 ~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
.+.||+++++.|.. +|+|.|+|. .+...||.|.|+|+
T Consensus 63 ~~~pG~t~~~tF~~--~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 63 LNSPGESYEVTFST--PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred ccCCCCEEEEEeCC--CEEEEEEcC--CccccCCEEEEEEC
Confidence 46899999998886 899999998 67888999999984
No 25
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.97 E-value=0.00077 Score=52.27 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=26.0
Q ss_pred cCccCCCCeeEEEEeCCCCeeeeeecccc
Q psy7532 29 QCPILHNTKFRYKFPAVPDGTFFYHSHIA 57 (235)
Q Consensus 29 q~~I~PG~~~tY~f~~~~~GT~wYHsH~~ 57 (235)
+..|+||++.+++|+++++|+|||||-..
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 34689999999999999999999999753
No 26
>PRK02710 plastocyanin; Provisional
Probab=96.77 E-value=0.0021 Score=48.88 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=32.4
Q ss_pred ccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 31 ~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
.+.||+++++.|+. +|+|-|+|- .+...||.|.|+|+
T Consensus 83 ~~~pg~t~~~tF~~--~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 83 AFAPGESWEETFSE--AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred ccCCCCEEEEEecC--CEEEEEEcC--CCccCCcEEEEEEC
Confidence 47899999999986 899999997 56678999999984
No 27
>PLN02835 oxidoreductase
Probab=96.66 E-value=0.0037 Score=59.45 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=39.0
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEecc
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
|+|++.-.-+|+++.+|.|.+|||...+...||...++|.+.
T Consensus 473 vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~ 514 (539)
T PLN02835 473 VYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQ 514 (539)
T ss_pred eCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccC
Confidence 778899999999999999999999988999999999999866
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=96.61 E-value=0.0059 Score=58.10 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=38.4
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEecc
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
|+|++....+|+++.+|.|..|||..++...||.=.|++.+.
T Consensus 481 vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 522 (539)
T TIGR03389 481 VPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNG 522 (539)
T ss_pred cCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccC
Confidence 678888999999999999999999999999999888888654
No 29
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.01 E-value=0.01 Score=56.89 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=35.0
Q ss_pred ccCCCCeeEEEEeCCCCeeeeeeccc---chhhhcCceeEEEEecc
Q psy7532 31 PILHNTKFRYKFPAVPDGTFFYHSHI---ALQKMDGIEGSFIIREP 73 (235)
Q Consensus 31 ~I~PG~~~tY~f~~~~~GT~wYHsH~---~~q~~~Gl~G~iIV~~~ 73 (235)
-+.||++.+..|+++++|+|||+|.. ..| .+|.|-|+|+|+
T Consensus 592 dv~PG~t~svtF~adkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 592 EVAPQATASVTFTADKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred EEcCCceEEEEEEcCCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 47899999999999999999999984 233 389999999863
No 30
>PRK10965 multicopper oxidase; Provisional
Probab=95.86 E-value=0.011 Score=55.97 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=40.9
Q ss_pred CCeEEEeCCcccCCCCCCCCCCCc------cc-CccCCCCeeEEE--Ee--CCCCeeeeeecccchhhhcCceeEEEE
Q psy7532 4 KTVTLHWHGLYQRYTPFMDGVQFV------TQ-CPILHNTKFRYK--FP--AVPDGTFFYHSHIALQKMDGIEGSFII 70 (235)
Q Consensus 4 ~~tsiHwHG~~~~~~~~~DGv~~v------tq-~~I~PG~~~tY~--f~--~~~~GT~wYHsH~~~q~~~Gl~G~iIV 70 (235)
.++-+|.||....-- -.||.+-- -. -.|+| ++.+.. |. ++..|.|.||||.-.+...||.|.+.|
T Consensus 447 ~~Hp~HlHg~~F~Vl-~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 447 MLHPFHIHGTQFRIL-SENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred CccCeEEeCcEEEEE-EecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 367899999864210 02332200 00 12555 444443 33 245789999999999999999999987
No 31
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.83 E-value=0.012 Score=54.65 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=49.7
Q ss_pred CCeEEEeCCcccC--CC---------CCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEec
Q psy7532 4 KTVTLHWHGLYQR--YT---------PFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (235)
Q Consensus 4 ~~tsiHwHG~~~~--~~---------~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~ 72 (235)
..+.+|.||..-. .. .|.|= -.+.||+...++|+++.+|.|.+|||...+...||.+.+.|..
T Consensus 377 ~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDT------v~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 377 MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDT------VLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred CccCeEEcCceEEEEecCCCcccccCccceE------EEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 4678899998432 11 12221 1479999999999999999999999999999999999998853
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=95.83 E-value=0.013 Score=55.71 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=35.5
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
|+|+..-..+|+++.||.|..|||..++...||.-.|+..
T Consensus 485 vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~ 524 (541)
T TIGR03388 485 IFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG 524 (541)
T ss_pred eCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc
Confidence 7888888999999999999999999999999997666543
No 33
>PLN02604 oxidoreductase
Probab=95.79 E-value=0.016 Score=55.53 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=35.5
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
|+|+..-..+|+++.+|-|..|||..++...||.-.|+..
T Consensus 508 vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~ 547 (566)
T PLN02604 508 VHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG 547 (566)
T ss_pred eCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC
Confidence 7888888999999999999999999999999997666543
No 34
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=95.77 E-value=0.016 Score=43.86 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=30.1
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
..||++|++.| +++|+|=|+|- .+...||.|.|+|.
T Consensus 80 ~~~G~t~s~Tf--~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 80 SEEGTTYEHTF--EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCCCEEEEEe--cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 47889988888 57899999997 45667999999984
No 35
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.71 E-value=0.022 Score=46.82 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=39.6
Q ss_pred ccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccC
Q psy7532 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 31 ~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~ 74 (235)
.|.+|++..-.|...++|.||+-|-...|+..||++-|||...-
T Consensus 146 GI~~G~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 146 GISSGQSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred CccCCceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 57899999878877789999999999999999999999998764
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=95.67 E-value=0.018 Score=54.79 Aligned_cols=41 Identities=12% Similarity=0.295 Sum_probs=36.1
Q ss_pred CCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEecc
Q psy7532 33 LHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 33 ~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
.|+.....+|+++.+|.|..|||..++...||.-.++|...
T Consensus 494 ~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 494 APAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred CCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCCh
Confidence 37778899999999999999999999999999888887543
No 37
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.60 E-value=0.025 Score=42.84 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEecc
Q psy7532 33 LHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 33 ~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
.+|++++++| +++|+|=|+|- -|...||.|.|+|.++
T Consensus 53 ~~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 53 KINEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 3566666555 57999999998 6778899999999875
No 38
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.39 E-value=0.028 Score=45.61 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=36.3
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccC
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~ 74 (235)
|.+|.+..=.|...++|+|||-|-...|..+||+|-+||-...
T Consensus 146 i~~Gqs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 146 ISSGHSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred ccccceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 4567776666666799999999999999999999999998653
No 39
>PLN02191 L-ascorbate oxidase
Probab=95.19 E-value=0.049 Score=52.28 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=35.5
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccC
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~ 74 (235)
++|+..-..+|+++.||.|..|||..++...||.=.| ++.++
T Consensus 508 vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~-~e~~~ 549 (574)
T PLN02191 508 LYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVF-AEGLN 549 (574)
T ss_pred eCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEE-ecChh
Confidence 6788889999999999999999999999999975444 55443
No 40
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.15 E-value=0.089 Score=37.12 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=25.9
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEe
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIR 71 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~ 71 (235)
+.||+++++.| +++|+|-|||-..- +|.|.|+|+
T Consensus 50 ~~~g~~~~~tf--~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 50 MKKEQAYSLTF--TEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred cCCCCEEEEEC--CCCEEEEEEcCCCC----CCeEEEEEC
Confidence 46677776655 67999999997533 499999985
No 41
>PRK10883 FtsI repressor; Provisional
Probab=95.12 E-value=0.024 Score=53.11 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=42.4
Q ss_pred CeEEEeCCcccCCCCCCCCCCCc-----ccCccCCCCeeEEEEeCCCCe----eeeeecccchhhhcCceeEEEEecc
Q psy7532 5 TVTLHWHGLYQRYTPFMDGVQFV-----TQCPILHNTKFRYKFPAVPDG----TFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 5 ~tsiHwHG~~~~~~~~~DGv~~v-----tq~~I~PG~~~tY~f~~~~~G----T~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
++-+|.||....-- -.+|.+-. -+..|.-+++-+..++.+..| .|.||||.-.+...||.|.|.|.++
T Consensus 394 ~HP~HlHg~~FqVl-~~~G~~~~~~~~gwkDTV~v~~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 394 PQAFHIEGVMFLIR-NVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred CcCEeECCccEEEE-EecCCCCCccccCcCcEEEcCCeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 56789999854210 02332100 012222234566666665544 7999999999999999999999764
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.05 E-value=0.022 Score=41.96 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=22.5
Q ss_pred CccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEE
Q psy7532 30 CPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFII 70 (235)
Q Consensus 30 ~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV 70 (235)
-.+.||++.+++|+..++|+|=|+|-... . |.|.|||
T Consensus 68 ~~l~~g~~~~~~f~~~~~G~y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 68 KVLPPGETATVTFTPLKPGEYEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp EEE-TT-EEEEEEEE-S-EEEEEB-SSS----T-TB-----
T ss_pred EEECCCCEEEEEEcCCCCEEEEEEcCCCC---c-ceecccC
Confidence 46899999999999999999999999655 2 7787776
No 43
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=94.21 E-value=0.14 Score=49.35 Aligned_cols=43 Identities=9% Similarity=-0.084 Sum_probs=36.0
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccC
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~ 74 (235)
++||+.-.-+|+++.+|.|..|||...+...||-=+++|.+..
T Consensus 495 vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~ 537 (596)
T PLN00044 495 VFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPE 537 (596)
T ss_pred eCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCC
Confidence 6788888999999999999999997666666777778887653
No 44
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=94.17 E-value=0.069 Score=41.11 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=27.2
Q ss_pred cCCC--CeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEec
Q psy7532 32 ILHN--TKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (235)
Q Consensus 32 I~PG--~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~ 72 (235)
+..+ ++++..| +++|+|-|.|-- ++.+||.|.|+|.+
T Consensus 90 ~~~~~~~s~~~Tf--e~~G~Y~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 90 LKAGINESFTHTF--ETPGEYTYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred cccCCCcceEEEe--cccceEEEEecc--CCCCCcEEEEEeCC
Confidence 4445 5555555 559999999954 56679999999964
No 45
>KOG1263|consensus
Probab=94.11 E-value=0.13 Score=49.17 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=40.9
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccCC
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPRS 75 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~~ 75 (235)
|+||.--.-+|.++.+|.|..|||...+...||.=.++|...+.
T Consensus 497 V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~ 540 (563)
T KOG1263|consen 497 VPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEE 540 (563)
T ss_pred eCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCc
Confidence 89999999999999999999999999999999999999987754
No 46
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=93.59 E-value=0.14 Score=45.36 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCeEEEeCCcccCCCCCCCCCCC------cccCccCCCCeeEEEEeCCCCeeeeeecccchhh-hcCceeEEEEecc
Q psy7532 4 KTVTLHWHGLYQRYTPFMDGVQF------VTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK-MDGIEGSFIIREP 73 (235)
Q Consensus 4 ~~tsiHwHG~~~~~~~~~DGv~~------vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~-~~Gl~G~iIV~~~ 73 (235)
....+|.+|....- -..||.+- +....|.||+.+...++++++|.|+.|||.-.+. ..|+.|.|-+...
T Consensus 223 ~~~~~~~~g~~~~~-v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 223 RDSRPHLIGGHGDY-VWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred CCCCCeEecCCceE-EEECCcccCCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 34567777764421 12466532 2334699999999999999999999999965443 4578888877654
No 47
>PLN02168 copper ion binding / pectinesterase
Probab=92.92 E-value=0.18 Score=48.21 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=33.0
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccC
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~ 74 (235)
++||+....+|+++.||.|+.|||...+...||-=+++|.+..
T Consensus 477 vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~ 519 (545)
T PLN02168 477 VYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEG 519 (545)
T ss_pred eCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEccc
Confidence 6789999999999999999999997544444444467775443
No 48
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=92.74 E-value=0.22 Score=37.63 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=32.1
Q ss_pred CCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---eccCCCceeeecCCcE
Q psy7532 118 PETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAGDASDCADSNSDLV 170 (235)
Q Consensus 118 pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag~~~~f~i~~h~~~ 170 (235)
-..+++||+. +.++|+|+.|+++++ |.. .....|+.|++.
T Consensus 14 ~~~~~~ng~~------------pGPtI~v~~Gd~v~i~~~N~l-~~~~siH~HG~~ 56 (117)
T PF07732_consen 14 RKVWTYNGQF------------PGPTIRVREGDTVRITVTNNL-DEPTSIHWHGLH 56 (117)
T ss_dssp EEEEEETTBS------------SEEEEEEETTEEEEEEEEEES-SSGBSEEEETSB
T ss_pred EEEEEECCCC------------CCCEEEEEcCCeeEEEEEecc-ccccccccceee
Confidence 4568999984 347999999999888 776 677888888874
No 49
>PLN02792 oxidoreductase
Probab=92.17 E-value=0.29 Score=46.62 Aligned_cols=43 Identities=9% Similarity=0.008 Sum_probs=38.7
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccC
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~ 74 (235)
|+|+..-.-+|+++.+|.|..|||...+...||.=.++|.+..
T Consensus 465 v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~ 507 (536)
T PLN02792 465 VYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPT 507 (536)
T ss_pred ECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCC
Confidence 6788888999999999999999999998888999999988653
No 50
>PLN02354 copper ion binding / oxidoreductase
Probab=91.28 E-value=0.46 Score=45.48 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=34.0
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEecc
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
|+|++....+|+++.||.|..|||.-.+...||-=+++|.++
T Consensus 480 vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~ 521 (552)
T PLN02354 480 VYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSP 521 (552)
T ss_pred eCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCC
Confidence 678888899999999999999999965666677666666544
No 51
>PLN02991 oxidoreductase
Probab=90.23 E-value=0.62 Score=44.51 Aligned_cols=42 Identities=7% Similarity=-0.061 Sum_probs=34.7
Q ss_pred cCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEecc
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
|+++....-+|+++.+|.|..|||...+...||.=.++|.+.
T Consensus 472 vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~ 513 (543)
T PLN02991 472 VYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTT 513 (543)
T ss_pred ECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCC
Confidence 678888999999999999999999966666677666666644
No 52
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=88.49 E-value=0.8 Score=36.32 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=39.9
Q ss_pred CccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEec
Q psy7532 30 CPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIRE 72 (235)
Q Consensus 30 ~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~ 72 (235)
-.+.||++-+..+...++|.|=.-|-...++..||.|-|.|.+
T Consensus 116 v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 116 VTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred eEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeCC
Confidence 4689999999999999999999999999999999999999864
No 53
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=82.18 E-value=2 Score=32.91 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=33.3
Q ss_pred ccCCCCeeEEEEeCC--CCee-eeeecccchhhhcCceeEEEE
Q psy7532 31 PILHNTKFRYKFPAV--PDGT-FFYHSHIALQKMDGIEGSFII 70 (235)
Q Consensus 31 ~I~PG~~~tY~f~~~--~~GT-~wYHsH~~~q~~~Gl~G~iIV 70 (235)
-|.||++.+..|+++ ++|+ |=|-|-+..|.+ .|.|.+.+
T Consensus 84 liggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~l 125 (125)
T TIGR02695 84 VIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVKL 125 (125)
T ss_pred ccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEeC
Confidence 488999999999995 6886 999999988887 69998753
No 54
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=81.96 E-value=2.5 Score=36.31 Aligned_cols=70 Identities=9% Similarity=-0.017 Sum_probs=47.7
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecc-cchhhhcCceeEEEEeccC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH-IALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH-~~~q~~~Gl~G~iIV~~~~ 74 (235)
|.|..++....++-.+.|..+.. + |--+-||...+..++++++|+|.-.|+ .....-..|.|.++|.+++
T Consensus 144 ~~~V~f~ltS~DViHsF~IP~l~-~-k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 144 GRPVRFKLTSADVIHSFWIPQLG-G-KIDAIPGMTTELWLTANKPGTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCeEEEEEEechhceeEEecCCC-c-eeeecCCceEEEEEecCCCeEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 44555555544444433333321 1 335678999999999999999999999 3444445799999999874
No 55
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=80.12 E-value=3.9 Score=30.94 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=28.8
Q ss_pred CccCCCCeeEEEEeCCCCeeeeeeccc--chhhhcCceeEEEE
Q psy7532 30 CPILHNTKFRYKFPAVPDGTFFYHSHI--ALQKMDGIEGSFII 70 (235)
Q Consensus 30 ~~I~PG~~~tY~f~~~~~GT~wYHsH~--~~q~~~Gl~G~iIV 70 (235)
.-+.||..-+..|+++++|+|+..|.- +..- .-|.|-|+|
T Consensus 78 ~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~gH-~~M~~~v~V 119 (120)
T PF00116_consen 78 MDAIPGRTNSVTFTPDKPGTYYGQCAEYCGAGH-SFMPGKVIV 119 (120)
T ss_dssp EEEBTTCEEEEEEEESSSEEEEEEE-SSSSTTG-GG-EEEEEE
T ss_pred cccccccceeeeeeeccCCcEEEcCccccCcCc-CCCeEEEEE
Confidence 356899999999999999999999982 2222 236777665
No 56
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=73.42 E-value=8.5 Score=31.73 Aligned_cols=69 Identities=10% Similarity=-0.013 Sum_probs=45.0
Q ss_pred CCCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeeccc--chhhhcCceeEEEEeccC
Q psy7532 3 GKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHI--ALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 3 ~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH~--~~q~~~Gl~G~iIV~~~~ 74 (235)
++|..++...-++..+.|.-+- ++ |.-+-||..-+..|+++++|+|...|.- +..- ..|.+-++|.+++
T Consensus 124 g~~v~~~~ts~DV~Hsf~ip~~-~~-k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h-~~M~~~v~v~~~~ 194 (201)
T TIGR02866 124 GTPVRLQVTSKDVIHSFWVPEL-GG-KIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH-SLMLFKVVVVERE 194 (201)
T ss_pred CCEEEEEEEeCchhhccccccc-Cc-eEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc-cCCeEEEEEECHH
Confidence 4555555544444333332222 12 3446799999999999999999999983 3322 4689999998763
No 57
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=70.25 E-value=6.9 Score=35.67 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=31.3
Q ss_pred CccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEeccC
Q psy7532 30 CPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 30 ~~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~~ 74 (235)
.-|.||.+.++.+++ .+|+|=|+| +.+ ..+.|.|+|....
T Consensus 80 EnIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 80 ENIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGEA 119 (375)
T ss_pred cccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCCC
Confidence 479999999887776 699999999 333 3358999998653
No 58
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=63.96 E-value=15 Score=28.79 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=24.6
Q ss_pred CCCCEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE---ecc
Q psy7532 116 NFPETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL---NAG 157 (235)
Q Consensus 116 ~~pd~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl---Nag 157 (235)
..+..+.+||... +.|+|++|++++| |..
T Consensus 39 ~~~~~f~~~~~~~-------------P~I~v~~Gd~V~v~v~N~~ 70 (148)
T TIGR03095 39 PSMYSFEIHDLKN-------------PTIVIPEGVTVHFTVINTD 70 (148)
T ss_pred CCceeEEecCCCC-------------CEEEEcCCCEEEEEEEeCC
Confidence 4567899999865 7999999999999 876
No 59
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=62.83 E-value=15 Score=27.72 Aligned_cols=31 Identities=16% Similarity=0.048 Sum_probs=25.9
Q ss_pred eeEEEEeCCcEEEE---eccCCCceeeecCCcEEE
Q psy7532 141 INYIYVSNNYIYSL---NAGDASDCADSNSDLVCM 172 (235)
Q Consensus 141 ~~~i~v~~GkryRl---Nag~~~~f~i~~h~~~~~ 172 (235)
...+.++.|+++++ |.+ ...+++++|+..+.
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~-~~~Hp~HlHG~~F~ 66 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNG-SMPHPFHLHGHSFQ 66 (138)
T ss_dssp TSEEEEETTSEEEEEEEECT-TSSEEEEETTSEEE
T ss_pred cceEEEeCCCEEEEEEECCC-CCccceEEEeeEEE
Confidence 36899999999988 877 77899999987663
No 60
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=59.63 E-value=11 Score=26.61 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=18.4
Q ss_pred CCCCCCCcccC----ccCCCCeeEEEEeCC--C--Ceeeee
Q psy7532 20 FMDGVQFVTQC----PILHNTKFRYKFPAV--P--DGTFFY 52 (235)
Q Consensus 20 ~~DGv~~vtq~----~I~PG~~~tY~f~~~--~--~GT~wY 52 (235)
|.+|-. .||. .|+||++.+|++..+ . +|+|..
T Consensus 41 wS~~~~-FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 41 WSDGKM-FTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp TTTT--------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred ecCCch-hhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 566664 4554 589999999999995 3 788753
No 61
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.72 E-value=47 Score=27.37 Aligned_cols=68 Identities=6% Similarity=-0.124 Sum_probs=42.6
Q ss_pred CCeEEEeCCcccCCCCCCCCCCCcccCccCCCCeeEEEEeCCCCeeeeeecc--cchhhhcCceeEEEEeccC
Q psy7532 4 KTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSH--IALQKMDGIEGSFIIREPR 74 (235)
Q Consensus 4 ~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~tY~f~~~~~GT~wYHsH--~~~q~~~Gl~G~iIV~~~~ 74 (235)
.|..++....++..+.|--+. ++.+.. -||..-+..|+++++|+|.--|. .+..- ..|.+-+.|.+++
T Consensus 124 ~~v~~~ltS~DViHsf~vp~l-~~k~d~-~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H-~~M~~~v~v~~~~ 193 (194)
T MTH00047 124 VPYHLLVTSSDVIHSFSVPDL-NLKMDA-IPGRINHLFFCPDRHGVFVGYCSELCGVGH-SYMPIVIEVVDVD 193 (194)
T ss_pred CEEEeeeecCccccceecccc-Cceeec-CCCceEEEEEEcCCCEEEEEEeehhhCcCc-ccCcEEEEEEcCC
Confidence 444455544444443332222 233443 48999999999999999999888 23322 3578888887763
No 62
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=54.07 E-value=22 Score=27.84 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=33.5
Q ss_pred CeEEEeCCcccCCCCCCCCCCCc----ccCccCCCCeeEEEEeCCC-Ceeeeeecc
Q psy7532 5 TVTLHWHGLYQRYTPFMDGVQFV----TQCPILHNTKFRYKFPAVP-DGTFFYHSH 55 (235)
Q Consensus 5 ~tsiHwHG~~~~~~~~~DGv~~v----tq~~I~PG~~~tY~f~~~~-~GT~wYHsH 55 (235)
...++..|....- -..||++-- +.-.|.||+.++.-+++++ +|.||.++.
T Consensus 82 ~~~~~i~gh~~~V-ia~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 82 SFNFSIDGHPMTV-IAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp BEEEEETTBCEEE-EEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEE
T ss_pred eEEEEeeccceeE-eeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEe
Confidence 4456666653321 125777521 1335899999999999987 999999994
No 63
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=52.64 E-value=21 Score=25.75 Aligned_cols=16 Identities=13% Similarity=0.032 Sum_probs=14.5
Q ss_pred eEEEEeCCcEEEE-ecc
Q psy7532 142 NYIYVSNNYIYSL-NAG 157 (235)
Q Consensus 142 ~~i~v~~GkryRl-Nag 157 (235)
..|+|++|++++| |.+
T Consensus 17 ~~i~v~~G~~V~~~N~~ 33 (99)
T TIGR02656 17 AKISIAAGDTVEWVNNK 33 (99)
T ss_pred CEEEECCCCEEEEEECC
Confidence 6899999999999 876
No 64
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=44.26 E-value=30 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=22.1
Q ss_pred cCccCCCCeeEEEEeC-C---CCeeeeeeccc
Q psy7532 29 QCPILHNTKFRYKFPA-V---PDGTFFYHSHI 56 (235)
Q Consensus 29 q~~I~PG~~~tY~f~~-~---~~GT~wYHsH~ 56 (235)
+.||+||.+++-.++. . ..|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 6699999999999954 2 35999887763
No 65
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=42.36 E-value=35 Score=24.48 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.3
Q ss_pred eeEEEEeCCcEEEE-ecc
Q psy7532 141 INYIYVSNNYIYSL-NAG 157 (235)
Q Consensus 141 ~~~i~v~~GkryRl-Nag 157 (235)
+..|+|++|++++| |.+
T Consensus 16 P~~i~V~~G~tV~~~n~~ 33 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNND 33 (99)
T ss_dssp SSEEEEETTEEEEEEEES
T ss_pred CCEEEECCCCEEEEEECC
Confidence 36899999999999 643
No 66
>PF03684 UPF0179: Uncharacterised protein family (UPF0179); InterPro: IPR005369 The function of this family is unknown, however the proteins contain two cysteine clusters that may be iron sulphur redox centres.
Probab=42.10 E-value=27 Score=27.36 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=23.8
Q ss_pred EEeCCcEEEE---eccCCCceeeecCCcEEEEee
Q psy7532 145 YVSNNYIYSL---NAGDASDCADSNSDLVCMSHV 175 (235)
Q Consensus 145 ~v~~GkryRl---Nag~~~~f~i~~h~~~~~~~~ 175 (235)
++++|+|||+ ..+ .+.|+||..+++.+.|.
T Consensus 37 nLe~Gr~YrI~~VR~~-~h~C~vH~~gV~~VEVe 69 (142)
T PF03684_consen 37 NLEPGRRYRIVEVRNN-EHPCPVHDGGVVAVEVE 69 (142)
T ss_pred cCCCCceEEEEEEcCC-CCccceeCCcEEEEEEE
Confidence 7899999999 333 48999998888876663
No 67
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=41.69 E-value=33 Score=25.93 Aligned_cols=23 Identities=26% Similarity=0.729 Sum_probs=17.5
Q ss_pred CCCCCCcccCccCCCCeeEEEEeC
Q psy7532 21 MDGVQFVTQCPILHNTKFRYKFPA 44 (235)
Q Consensus 21 ~DGv~~vtq~~I~PG~~~tY~f~~ 44 (235)
.||=-+ ..||+.+|+.++|.+..
T Consensus 65 ~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 65 TDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCccc-EeCCCcCCcEEEEEEee
Confidence 455322 47999999999999875
No 68
>COG1860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.14 E-value=37 Score=26.63 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=24.8
Q ss_pred EEEeCCcEEEE--eccCCCceeeecCCcEEEEe
Q psy7532 144 IYVSNNYIYSL--NAGDASDCADSNSDLVCMSH 174 (235)
Q Consensus 144 i~v~~GkryRl--Nag~~~~f~i~~h~~~~~~~ 174 (235)
+++++|.|||+ =-+..+.|+|+..++..++|
T Consensus 38 ~nLe~GrrYkVv~VR~~~~~C~ihdg~v~~VeV 70 (147)
T COG1860 38 LNLEEGRRYKVVEVRSQVQPCPIHDGGVVAVEV 70 (147)
T ss_pred eccCCCcEEEEEEehhcccccceecCCEEEEEE
Confidence 58999999999 22446889999999877666
No 69
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=36.55 E-value=45 Score=25.64 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=15.7
Q ss_pred ceeEEEEeCCcEEEE-ecc
Q psy7532 140 SINYIYVSNNYIYSL-NAG 157 (235)
Q Consensus 140 ~~~~i~v~~GkryRl-Nag 157 (235)
.+..++|++|+++|| |.+
T Consensus 52 ~PA~v~v~pGDTVtw~~~d 70 (128)
T COG3794 52 EPAEVTVKPGDTVTWVNTD 70 (128)
T ss_pred cCcEEEECCCCEEEEEECC
Confidence 336899999999999 888
No 70
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=34.64 E-value=1.3e+02 Score=24.11 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=29.9
Q ss_pred cCCCCeeEEEEeCCCCeeeeeeccc--chhhhcCceeEEEEecc
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHI--ALQKMDGIEGSFIIREP 73 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~--~~q~~~Gl~G~iIV~~~ 73 (235)
+-||..-+..|.+.++|+|+-.|.- +..- ..|.+.+.|.++
T Consensus 107 avPGr~n~l~~~~~~~G~y~gqCsElCG~gH-s~M~~~V~vvs~ 149 (162)
T PTZ00047 107 AIPGRLHKINTFILREGVFYGQCSEMCGTLH-GFMPIVVEAVSP 149 (162)
T ss_pred ccCCceEEEEEecCCCeEEEEEcchhcCcCc-cCceEEEEEeCH
Confidence 3478888888889999999999982 3222 247777777665
No 71
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=34.59 E-value=26 Score=26.19 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=14.3
Q ss_pred ccCccCCCCeeEEEEeC
Q psy7532 28 TQCPILHNTKFRYKFPA 44 (235)
Q Consensus 28 tq~~I~PG~~~tY~f~~ 44 (235)
..|||.+|+.++|.+..
T Consensus 84 ~~CPi~~G~~~~~~~~~ 100 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTI 100 (134)
T ss_dssp TTSTBTTTEEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEE
Confidence 48999999988877776
No 72
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=34.23 E-value=31 Score=25.91 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=15.3
Q ss_pred ccCccCCCCeeEEEEeCC
Q psy7532 28 TQCPILHNTKFRYKFPAV 45 (235)
Q Consensus 28 tq~~I~PG~~~tY~f~~~ 45 (235)
..||+.+|+.++|.+...
T Consensus 78 ~~CPl~~G~~~~~~~~~~ 95 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVN 95 (127)
T ss_pred ccCCcCCCCEEEEEEEEe
Confidence 479999999999998753
No 73
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=32.67 E-value=1.5e+02 Score=23.06 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=20.8
Q ss_pred eeEEEEeCCcEEEE---eccC-CCceeeecCCc
Q psy7532 141 INYIYVSNNYIYSL---NAGD-ASDCADSNSDL 169 (235)
Q Consensus 141 ~~~i~v~~GkryRl---Nag~-~~~f~i~~h~~ 169 (235)
+..|+|++|++++| |... .+.|.+..+++
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi 92 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSIDAYGI 92 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEECCCCc
Confidence 36899999999977 6663 55566665554
No 74
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=32.56 E-value=19 Score=26.83 Aligned_cols=7 Identities=57% Similarity=0.847 Sum_probs=5.8
Q ss_pred eeeeccc
Q psy7532 50 FFYHSHI 56 (235)
Q Consensus 50 ~wYHsH~ 56 (235)
=|||||-
T Consensus 69 G~YHSHP 75 (119)
T cd08058 69 GWYHSHP 75 (119)
T ss_pred EEEecCC
Confidence 4999994
No 75
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=31.97 E-value=35 Score=30.98 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=28.0
Q ss_pred CCCCCCCCcccCccCCCCeeEEEEeC--CCCeeeeeeccc--chhhhcCceeE---EEEec
Q psy7532 19 PFMDGVQFVTQCPILHNTKFRYKFPA--VPDGTFFYHSHI--ALQKMDGIEGS---FIIRE 72 (235)
Q Consensus 19 ~~~DGv~~vtq~~I~PG~~~tY~f~~--~~~GT~wYHsH~--~~q~~~Gl~G~---iIV~~ 72 (235)
.|+-|.|...--.+..|++|.|+..+ .++|+| |-|. ..+-+..+.|| +.|.+
T Consensus 70 ~~ing~~~p~S~~le~G~~y~fki~lkar~pG~~--hvh~~~nv~~~Gp~~Gpg~~v~i~g 128 (381)
T PF04744_consen 70 RWINGQPVPRSVSLELGGTYEFKIVLKARRPGTW--HVHPMLNVEDAGPIVGPGQWVTIEG 128 (381)
T ss_dssp EEETTEE-SS-B---TT-EEEEEEEEEE-S-EEE--EEEEEEEETTTEEEEEEEEEEEEES
T ss_pred eeecCccccceEEeecCCeeeEEEEEecccCccc--cceeeEeeccCCCCcCCceEEEEec
Confidence 35666665555578999998888877 589995 6664 44444345665 45553
No 76
>PRK01177 hypothetical protein; Provisional
Probab=31.89 E-value=54 Score=25.64 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=23.2
Q ss_pred EEeCCcEEEE-ecc-CCCceeeecCCcEEEEee
Q psy7532 145 YVSNNYIYSL-NAG-DASDCADSNSDLVCMSHV 175 (235)
Q Consensus 145 ~v~~GkryRl-Nag-~~~~f~i~~h~~~~~~~~ 175 (235)
++++|+|||+ ..- ..+.|+||..+++.+.|.
T Consensus 39 nLe~GrrYrI~~VR~~~h~C~vH~~gV~~VEVe 71 (140)
T PRK01177 39 NLEPGRRYKILKVREIEHPCPLHEGKVRVVEVV 71 (140)
T ss_pred cCCCCceEEEEEEecCCCccceeCCCEEEEEEE
Confidence 7899999999 332 257899998887766553
No 77
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.63 E-value=46 Score=22.91 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=13.6
Q ss_pred CCCCCcccCccCCCCeeEEEEeCC
Q psy7532 22 DGVQFVTQCPILHNTKFRYKFPAV 45 (235)
Q Consensus 22 DGv~~vtq~~I~PG~~~tY~f~~~ 45 (235)
+|.-.++ .+++||. +.|+|.++
T Consensus 35 ~G~w~~~-~~l~~G~-y~Ykf~vd 56 (82)
T cd02861 35 DGLWVVT-VELRPGR-YEYKFVVD 56 (82)
T ss_pred CCcEEEE-EeCCCCc-EEEEEEEC
Confidence 4554333 3567766 78888775
No 78
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.00 E-value=1.6e+02 Score=24.83 Aligned_cols=42 Identities=10% Similarity=-0.073 Sum_probs=29.9
Q ss_pred cCCCCeeEEEEeCCCCeeeeeeccc-chhhhcCceeEEEEecc
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~-~~q~~~Gl~G~iIV~~~ 73 (235)
.-||..-...|.++++|+|+-.|.- ....-..|.+.+.|.++
T Consensus 174 a~PG~~~~~~~~~~~~G~~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 174 AVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred cCCCceEEEEEEeCCceEEEEEChhhccccccCCcEEEEEECH
Confidence 3589988889999999999999983 21122346667766654
No 79
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=29.05 E-value=1.2e+02 Score=22.06 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=31.8
Q ss_pred ccCCCCeeEEEEeCCCCeeeeeecccchhhhcCceeEEEEecc
Q psy7532 31 PILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73 (235)
Q Consensus 31 ~I~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~iIV~~~ 73 (235)
.+.||+++.++|..+-.|+--|.|+... ....-..-+.|...
T Consensus 30 ~l~~g~~~~~~F~~~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 30 VLKPGQSYSFSFRDNFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred ECCCCCEEEEEEecCcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 5899999999998876677778899877 22124777777755
No 80
>KOG4063|consensus
Probab=28.78 E-value=59 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=19.3
Q ss_pred CCCCCCc-----ccCccCCCCeeEEEEeCC
Q psy7532 21 MDGVQFV-----TQCPILHNTKFRYKFPAV 45 (235)
Q Consensus 21 ~DGv~~v-----tq~~I~PG~~~tY~f~~~ 45 (235)
.||-... .-||+.+|++++|.+...
T Consensus 94 ~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 94 SDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred CcccccccccccccCcccCCCceEEEEEee
Confidence 4554444 579999999999999863
No 81
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=27.71 E-value=38 Score=25.74 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=17.9
Q ss_pred CCCCCCcccCccCCCCeeEEEEeC
Q psy7532 21 MDGVQFVTQCPILHNTKFRYKFPA 44 (235)
Q Consensus 21 ~DGv~~vtq~~I~PG~~~tY~f~~ 44 (235)
.+||-| -|.-++||++|+|.=-+
T Consensus 65 G~GVVG-eQP~l~PG~~y~YtSg~ 87 (126)
T COG2967 65 GEGVVG-EQPLLAPGEEYQYTSGC 87 (126)
T ss_pred cCceec-cccccCCCCceEEcCCc
Confidence 467754 48999999999997544
No 82
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.57 E-value=1.5e+02 Score=24.87 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=31.0
Q ss_pred cCCCCeeEEEEeCCCCeeeeeeccc-chhhhcCceeEEEEecc
Q psy7532 32 ILHNTKFRYKFPAVPDGTFFYHSHI-ALQKMDGIEGSFIIREP 73 (235)
Q Consensus 32 I~PG~~~tY~f~~~~~GT~wYHsH~-~~q~~~Gl~G~iIV~~~ 73 (235)
+-||..-...|+++++|+|+-.|.- ....-..|.+.++|.++
T Consensus 174 ~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 174 AIPGRLNQLSFEPKRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCCcceeEEEEeCCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 4589998999999999999998882 21122347778888765
No 83
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=26.45 E-value=61 Score=21.93 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=21.1
Q ss_pred CeEEEe--CCcccC----------CCCCCCCCCCcccCccCCCCeeEEEEeC
Q psy7532 5 TVTLHW--HGLYQR----------YTPFMDGVQFVTQCPILHNTKFRYKFPA 44 (235)
Q Consensus 5 ~tsiHw--HG~~~~----------~~~~~DGv~~vtq~~I~PG~~~tY~f~~ 44 (235)
|...|. ||-.+. ...+..|+- +++.||.+||.+..+..-
T Consensus 1 pl~FH~~~~G~nV~L~~~~~~A~R~~sf~~giV-FS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 1 PLRFHPNVHGKNVRLSNDGTVARRVSSFNNGIV-FSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S--EEC-EE-TTEEE-SSS-EEEEST-SSS-EE-EESS-B-TT-EEEEEEEE
T ss_pred CccccCcccCCCEEEcCCCeEEEecccCCceEE-EecCCccCCCEEEEEEEe
Confidence 445664 676543 234566764 678999999999888854
No 84
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=26.13 E-value=59 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.6
Q ss_pred cccCccCCCCeeEEE--EeC
Q psy7532 27 VTQCPILHNTKFRYK--FPA 44 (235)
Q Consensus 27 vtq~~I~PG~~~tY~--f~~ 44 (235)
.++||+..|++++|. +..
T Consensus 80 ~s~CP~~kGet~~Y~~p~sl 99 (130)
T cd00915 80 YSFCGALKGETVYYVGPFSF 99 (130)
T ss_pred cccCCccCCceEEEeeeecc
Confidence 379999999999999 654
No 85
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=25.40 E-value=55 Score=24.64 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=15.2
Q ss_pred ccCccCCCCeeEEEEeC
Q psy7532 28 TQCPILHNTKFRYKFPA 44 (235)
Q Consensus 28 tq~~I~PG~~~tY~f~~ 44 (235)
+.||+.+|+.++|.+..
T Consensus 75 ~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 75 TSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCCCcCCcEEEEEEee
Confidence 57999999999999865
No 86
>KOG1554|consensus
Probab=24.65 E-value=52 Score=28.90 Aligned_cols=7 Identities=57% Similarity=0.970 Sum_probs=6.2
Q ss_pred eeeeecc
Q psy7532 49 TFFYHSH 55 (235)
Q Consensus 49 T~wYHsH 55 (235)
.-|||||
T Consensus 134 VGWyHSH 140 (347)
T KOG1554|consen 134 VGWYHSH 140 (347)
T ss_pred eeeeecC
Confidence 5699999
No 87
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=23.86 E-value=39 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=12.5
Q ss_pred CCCCCCcccCccCCCCeeEEEEe
Q psy7532 21 MDGVQFVTQCPILHNTKFRYKFP 43 (235)
Q Consensus 21 ~DGv~~vtq~~I~PG~~~tY~f~ 43 (235)
.+||-| .|.-|.||++|+|.=-
T Consensus 49 G~GVVG-~~P~L~pGe~f~Y~S~ 70 (90)
T PF04379_consen 49 GEGVVG-QQPVLAPGESFEYTSG 70 (90)
T ss_dssp EESBTT-B--EE-TTEEEEEEEE
T ss_pred CCceEc-cCceECCCCcEEEcCC
Confidence 466654 3556799998777643
No 88
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=23.68 E-value=1.7e+02 Score=24.57 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=30.8
Q ss_pred CCCCeeEEEEeCCCCeeeeeecc--cchhhhcCceeEEEEecc
Q psy7532 33 LHNTKFRYKFPAVPDGTFFYHSH--IALQKMDGIEGSFIIREP 73 (235)
Q Consensus 33 ~PG~~~tY~f~~~~~GT~wYHsH--~~~q~~~Gl~G~iIV~~~ 73 (235)
-||..-+..|+++++|+|.-.|. .+.+-+ .|.+-++|.++
T Consensus 174 iPG~~n~~~~~~~~~G~y~g~CaE~CG~~Ha-~M~~~V~v~~~ 215 (226)
T TIGR01433 174 MAGMQTKLHLIANEPGVYDGISANYSGPGFS-GMKFKAIATDR 215 (226)
T ss_pred CCCceEEEEEEeCCCEEEEEEchhhcCcCcc-CCeEEEEEECH
Confidence 48888889999999999999887 343333 47777887765
No 89
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.41 E-value=2.8e+02 Score=23.34 Aligned_cols=40 Identities=3% Similarity=-0.062 Sum_probs=28.0
Q ss_pred CCCCeeEEEEeCCCCeeeeeeccc--chhhhcCceeEEEEecc
Q psy7532 33 LHNTKFRYKFPAVPDGTFFYHSHI--ALQKMDGIEGSFIIREP 73 (235)
Q Consensus 33 ~PG~~~tY~f~~~~~GT~wYHsH~--~~q~~~Gl~G~iIV~~~ 73 (235)
-||..-...|.++++|+|+--|.- +.. -.-|...+.|.++
T Consensus 175 iPG~~~~~~~~~~~~G~~~g~Cse~CG~~-H~~M~~~v~v~~~ 216 (227)
T MTH00098 175 IPGRLNQTTLMSTRPGLYYGQCSEICGSN-HSFMPIVLELVPL 216 (227)
T ss_pred CCCceEEEEEecCCcEEEEEECccccCcC-cCCceEEEEEeCH
Confidence 488888889999999999998872 221 1235566665544
No 90
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=23.40 E-value=64 Score=23.68 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.9
Q ss_pred cCccCCCCeeEEEEeC
Q psy7532 29 QCPILHNTKFRYKFPA 44 (235)
Q Consensus 29 q~~I~PG~~~tY~f~~ 44 (235)
.||+.+|+.++|....
T Consensus 71 ~CPl~~G~~~~~~~~~ 86 (118)
T smart00737 71 KCPIEKGETVNYTNSL 86 (118)
T ss_pred CCCCCCCeeEEEEEee
Confidence 7999999998888764
No 91
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=23.37 E-value=2e+02 Score=23.93 Aligned_cols=40 Identities=8% Similarity=-0.083 Sum_probs=30.6
Q ss_pred CCCCeeEEEEeCCCCeeeeeecc--cchhhhcCceeEEEEecc
Q psy7532 33 LHNTKFRYKFPAVPDGTFFYHSH--IALQKMDGIEGSFIIREP 73 (235)
Q Consensus 33 ~PG~~~tY~f~~~~~GT~wYHsH--~~~q~~~Gl~G~iIV~~~ 73 (235)
-||..-...|+++++|+|+-.|- .+.+-+ -|..-+.|.++
T Consensus 165 iPG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs-~M~~~v~v~~~ 206 (217)
T TIGR01432 165 MTGMTMNWYLQADQVGTYRGRNANFNGEGFA-DQTFDVNAVSE 206 (217)
T ss_pred CCCceEEEEEEeCCCEEEEEEehhhcCcccc-CCeEEEEEeCH
Confidence 48999899999999999999887 333333 47777777665
No 92
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=23.09 E-value=66 Score=30.31 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=37.6
Q ss_pred CCeEEEeCCcccCCCCCCCCCCCcc------cCccCCCCeeEEEEeCCCCeeeeeecc-cchhhhcCceeEEEEe
Q psy7532 4 KTVTLHWHGLYQRYTPFMDGVQFVT------QCPILHNTKFRYKFPAVPDGTFFYHSH-IALQKMDGIEGSFIIR 71 (235)
Q Consensus 4 ~~tsiHwHG~~~~~~~~~DGv~~vt------q~~I~PG~~~tY~f~~~~~GT~wYHsH-~~~q~~~Gl~G~iIV~ 71 (235)
+..++-.||+... .|+.-+.. .-.+.|-++-.|.|.++.+|-+||-|- .....-+-|.|-++|+
T Consensus 566 DEVt~l~tnld~V----ed~thgfv~p~~~v~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rmlve 636 (637)
T COG4263 566 DEVTVLTTNLDEV----EDLTHGFVIPNYGVNMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRMLVE 636 (637)
T ss_pred cEEEEEeccccee----ccccceeeeccCceEEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccceeec
Confidence 3456667777653 23332211 113678888888888888888888765 2222223356666665
No 93
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=23.09 E-value=35 Score=27.92 Aligned_cols=6 Identities=67% Similarity=1.132 Sum_probs=5.4
Q ss_pred eeeecc
Q psy7532 50 FFYHSH 55 (235)
Q Consensus 50 ~wYHsH 55 (235)
=|||||
T Consensus 83 GwYHSH 88 (187)
T cd08067 83 GWYHSH 88 (187)
T ss_pred EEEecC
Confidence 499999
No 94
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=22.60 E-value=58 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=15.0
Q ss_pred CCCCCCcccCccCCCCeeEEEEe
Q psy7532 21 MDGVQFVTQCPILHNTKFRYKFP 43 (235)
Q Consensus 21 ~DGv~~vtq~~I~PG~~~tY~f~ 43 (235)
.+||-| .|.-|.||++|.|.=-
T Consensus 66 G~GVVG-~qP~L~PGe~F~Y~S~ 87 (127)
T PRK05461 66 GEGVVG-EQPVLAPGESFEYTSG 87 (127)
T ss_pred CCceec-CCceECCCCCeEEeCC
Confidence 466654 3666899998877643
No 95
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=20.99 E-value=40 Score=28.88 Aligned_cols=8 Identities=50% Similarity=0.742 Sum_probs=6.3
Q ss_pred eeeeeccc
Q psy7532 49 TFFYHSHI 56 (235)
Q Consensus 49 T~wYHsH~ 56 (235)
.=|||||-
T Consensus 92 VGwYHSHP 99 (244)
T cd08068 92 VGWYHSHP 99 (244)
T ss_pred EEEEecCC
Confidence 45999994
No 96
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.56 E-value=61 Score=20.80 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=16.9
Q ss_pred CEEEEeceecCCCccCcceeeceeEEEEeCCcEEEE
Q psy7532 119 ETYLINGKNNYVYVSNNYIYVSINYIYVSNNYIYSL 154 (235)
Q Consensus 119 d~~lING~~~~~~~~~~~~~~~~~~i~v~~GkryRl 154 (235)
..++|||+.. ..+...+++|+++.+
T Consensus 34 G~V~VNg~~~-----------~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELE-----------NRRGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEc-----------cCCCCCCCCCCEEEe
Confidence 4588999964 113457788887765
Done!