RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7532
(235 letters)
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 93.4 bits (232), Expect = 6e-22
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 1 MMGKTVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQK 60
++ + V +HWHG+ Q TP+ DG + VTQCPIL F Y+F GT+ YH+H +Q+
Sbjct: 73 LLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQR 132
Query: 61 MDGIEGSFIIREPRSIDKTAPL-WDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF-- 117
G+ GS + PR K+ P +DYD II+TDW H T E+ G L + ++
Sbjct: 133 EAGLYGSIRVSLPRG--KSEPFSYDYD---RSIILTDWYHKSTYEQALG-LSSIPFDWVG 186
Query: 118 -PETYLINGKNNY 129
P++ LI GK Y
Sbjct: 187 EPQSLLIQGKGRY 199
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 86.5 bits (215), Expect = 7e-22
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 5 TVTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAV-PDGTFFYHSHIALQKM-D 62
T+HWHGL Q TP+ DGV VTQCPI F Y+F GT++YHSH + +
Sbjct: 47 PTTIHWHGLRQPGTPWADGVPGVTQCPIPPGESFTYRFTVKQQAGTYWYHSHTSWLQQAA 106
Query: 63 GIEGSFIIREPRS 75
G+ G+ II +P S
Sbjct: 107 GLYGAIIIEDPAS 119
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 86.3 bits (214), Expect = 2e-19
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
V +HWHG+ Q TP+ DG VTQC I F Y F GT+FYH H +Q+ G+
Sbjct: 55 VVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLY 114
Query: 66 GSFIIREPRSIDKTAPL-WDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF---PETY 121
GS I+ P + P +D + ++++DW H E+ G L + + P++
Sbjct: 115 GSLIVDVPDG--EKEPFHYDGE---FNLLLSDWWHKSIHEQEVG-LSSKPMRWIGEPQSL 168
Query: 122 LINGKNNY 129
LING+ +
Sbjct: 169 LINGRGQF 176
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 75.2 bits (185), Expect = 1e-15
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
++HWHGL MDGV +TQ P Y F GT++YH H Q DG+
Sbjct: 86 TSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLA 143
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFP-ETYLIN 124
G+ II D+ + D VI+ DWL + + Y G FP +T L+N
Sbjct: 144 GALIIE-----DENSEPLGVDDE-PVILQDDWLDEDGTDLYQ--EGPAMGGFPGDTLLVN 195
Query: 125 GKNN 128
G
Sbjct: 196 GAIL 199
Score = 31.3 bits (71), Expect = 0.39
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 32 ILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIEGSFIIREP 73
+ + +F A G + +H HI + +G+ G F +
Sbjct: 410 VAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVPE 451
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 72.4 bits (177), Expect = 1e-14
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
+ +HWHG+ Q+ +P+ DG VTQC I F YKF GT FYH H +Q+ G+
Sbjct: 77 LVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLY 136
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNF---PETYL 122
GS I+ + K +D + ++++DW H+ + G L + + ++ L
Sbjct: 137 GSLIVDVAKG-PKERLRYDGEFN---LLLSDWWHESIPSQELG-LSSKPMRWIGEAQSIL 191
Query: 123 INGKNNY 129
ING+ +
Sbjct: 192 INGRGQF 198
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 65.5 bits (160), Expect = 2e-12
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFP-AVPDGTFFYHSHIALQKMDGI 64
VT+HWHG+ Q + DG ++TQCPI + Y F GT ++H+HI+ + +
Sbjct: 56 VTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRAT-V 114
Query: 65 EGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTG-NFPETYLI 123
G+ +I + P D ++P II+ +W + + +T N + Y I
Sbjct: 115 YGAIVILPKPGVPYPFPKPDREVP---IILGEWWNADVEAVINQANQTGGAPNVSDAYTI 171
Query: 124 NGKNNYVY 131
NG +Y
Sbjct: 172 NGHPGPLY 179
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 63.7 bits (155), Expect = 9e-12
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 6 VTLHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDG 63
VT+HWHGL QR PF DG +Q PI F Y+ P G++FYHSH+ Q +
Sbjct: 62 VTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTA 121
Query: 64 IEGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTN---TGNFPET 120
G I+ D P + YD +++++D+ +E G L T +G E
Sbjct: 122 -FGPLIVE-----DCEPPPYKYD-DERILLVSDFFSATDEEIEQGLLSTPFTWSGE-TEA 173
Query: 121 YLINGK 126
L+NGK
Sbjct: 174 VLLNGK 179
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 60.3 bits (146), Expect = 1e-10
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 7 TLHWHGLYQRYTPF-MDGVQFVTQCPILHNTKFRYKFPAVPDGTFFYHSHIALQKMDGIE 65
++HWHG+ PF MDGV V+ I F Y+FP GT++YHSH Q+ G+
Sbjct: 99 SIHWHGIL---LPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY 155
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDW 97
G II +P D D + HV++++DW
Sbjct: 156 GPLII-DPAEPDPVR--ADRE---HVVLLSDW 181
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 49.8 bits (119), Expect = 4e-07
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKF-PAVPDGTFFYHSHIALQKMDGIEG 66
L W G+ QR + DGV T CPI T F Y F P G++FY+ + + G G
Sbjct: 82 LTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFG 140
Query: 67 SFIIREPRSIDKTAPLWDYDLPS--HVIIITDWLHDMTDEKYPGFLRTNTG-NFPETYLI 123
+ I P+ Y P + ++I DW + + FL + P+ LI
Sbjct: 141 GLRVNSRLLI----PV-PYADPEDDYTVLIGDW-YTKSHTALKKFLDSGRTLGRPDGVLI 194
Query: 124 NGKN 127
NGK+
Sbjct: 195 NGKS 198
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 47.7 bits (113), Expect = 2e-06
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 10 WHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDGIEGS 67
W+GL R + DGV+ T CPIL T + Y+F V D G++FY + LQK G G+
Sbjct: 83 WNGLQLRKNSWQDGVR-GTNCPILPGTNWTYRF-QVKDQIGSYFYFPSLLLQKAAGGYGA 140
Query: 68 FIIREPRSIDKTAPLWDYDLPSHVIIITDWLH-DMTDEKYPGFLRTNTG-NFPETYLING 125
I P + P D + I+I DW + D T + L P+ L NG
Sbjct: 141 IRIYNPELVPVPFPKPDEEYD---ILIGDWFYADHTVMR--ASLDNGHSLPNPDGILFNG 195
Query: 126 K 126
+
Sbjct: 196 R 196
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 45.7 bits (108), Expect = 8e-06
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD-GTFFYHSHIALQKMDGIEG 66
L W+G+ QR + DGV T CPI N+ + YKF GTF Y K G G
Sbjct: 84 LTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFG 142
Query: 67 SFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGN---FPETYLI 123
+ + E I PL D D +++ DW T K R ++G FP+ LI
Sbjct: 143 AINVYERPRIPIPFPLPDGDF---TLLVGDWYK--TSHKTLQ-QRLDSGKVLPFPDGVLI 196
Query: 124 NGK 126
NG+
Sbjct: 197 NGQ 199
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 43.0 bits (101), Expect = 7e-05
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDGIE 65
L W+G++ R + DGV + T CPI + Y F V D G++FY +A+QK G
Sbjct: 71 LSWNGVHMRKNSYQDGV-YGTTCPIPPGKNYTYDF-QVKDQVGSYFYFPSLAVQKAAGGY 128
Query: 66 GSF-IIREPR-SIDKTAPLWDYDLPSHVIIITDWL-HDMTDEKYPGFLRTNTGNFPETYL 122
GS I PR + P D+ +I DW + T K P+ +
Sbjct: 129 GSLRIYSLPRIPVPFPEPAGDF-----TFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVM 183
Query: 123 INGKN-NYVY 131
ING+ +YVY
Sbjct: 184 INGQGVSYVY 193
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 38.9 bits (90), Expect = 0.002
Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 6/126 (4%)
Query: 8 LHWHGLYQRYTPFMDGVQFVTQCPILHNTKFRYKFPAVPD--GTFFYHSHIALQKMDGIE 65
L WHG+ QR + + DGV T C I + Y+F V D G+FFY AL + G
Sbjct: 84 LTWHGVQQRKSAWQDGV-GGTNCAIPAGWNWTYQF-QVKDQVGSFFYAPSTALHRAAGGY 141
Query: 66 GSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLRTNTGNFPETYLING 125
G+ I I D + I DW + P+ LIN
Sbjct: 142 GAITINNRDVIPIPFGFPDGG--DITLFIADWYARDHRALRRALDAGDLLGAPDGVLINA 199
Query: 126 KNNYVY 131
Y Y
Sbjct: 200 FGPYQY 205
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 31.1 bits (71), Expect = 0.43
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 2 MGKTVTLHWHGLYQRYTPFMDG-VQFVTQCPILHNTKFRYKF-PAVPDGTFFYHSHI--- 56
+ + TLHWHGL + G V Q I K F P T ++H H
Sbjct: 95 LPEETTLHWHGL------EVPGEVDGGPQGIIAPGGKRTVTFTVDQPAATCWFHPHQHGK 148
Query: 57 -ALQKMDGIEGSFIIREPRS 75
Q G+ G +I + S
Sbjct: 149 TGRQVAMGLAGLVLIEDDES 168
>gnl|CDD|215896 pfam00394, Cu-oxidase, Multicopper oxidase. Many of the proteins
in this family contain multiple similar copies of this
plastocyanin-like domain.
Length = 146
Score = 29.6 bits (67), Expect = 0.71
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 89 SHVIIITDWLHDMTDEKYPGFLRT--NTGNFPET---YLINGKNN 128
+VI ++DW H + L + +FP LINGK+
Sbjct: 2 DYVITLSDWYHKDAKDLEKELLASGKAPTDFPPVPDAVLINGKDG 46
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one LDL-receptor
class A domain, one C-type lectin family domain, and
16-18 putative TMSs in positions between residues 2200
and 4100. Polycystin-L has been shown to be a cation
(Na+, K+ and Ca2+) channel that is activated by Ca2+. Two
members of the PCC family (polycystin 1 and 2) are
mutated in autosomal dominant polycystic kidney disease,
and polycystin-L is deleted in mice with renal and
retinal defects. Note: this model is restricted to the
amino half for technical reasons.
Length = 2740
Score = 30.1 bits (67), Expect = 1.3
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 65 EGSFIIREPRSIDKTAPLWDYDLPSHVIIITDWLHDMTDEKYPGFLR 111
G+ I +SI T P D + WLHD+ K G L
Sbjct: 2571 LGAAIRALNKSIAITLP----DPNGEASGLPHWLHDLIASKLKGLLD 2613
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 29.3 bits (65), Expect = 2.4
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 110 LRTNTGNFPETYLINGKNNYVYVSNNYIYVSI-----NYIYVSNNYIYSLNAGDASDCAD 164
LR F +GK +Y NN +Y+S N Y S + YS G A D D
Sbjct: 155 LRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTS--YSDGDGGAIDVTD 212
Query: 165 SNSDLVCMSHVNAQNIRN 182
+NSD H + I N
Sbjct: 213 NNSD---SKHPSGYTIIN 227
>gnl|CDD|197310 cd09076, L1-EN, Endonuclease domain (L1-EN) of the non-LTR
retrotransposon LINE-1 (L1), and related domains. This
family contains the endonuclease domain (L1-EN) of the
non-LTR retrotransposon LINE-1 (L1), and related
domains, including the endonuclease of Xenopus laevis
Tx1. These retrotranspons belong to the subtype 2,
L1-clade. LINES can be classified into two subtypes.
Subtype 2 has two ORFs: the second (ORF2) encodes a
modular protein consisting of an N-terminal
apurine/apyrimidine endonuclease domain (EN), a central
reverse transcriptase, and a zinc-finger-like domain at
the C-terminus. LINE-1/L1 elements (full length and
truncated) comprise about 17% of the human genome. This
endonuclease nicks the genomic DNA at the consensus
target sequence 5'TTTT-AA3' producing a ribose
3'-hydroxyl end as a primer for reverse transcription of
associated template RNA. This subgroup also includes the
endonuclease of Xenopus laevis Tx1, another member of
the L1-clade. This family belongs to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds.
Length = 236
Score = 26.9 bits (60), Expect = 8.8
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 126 KNNYVYVSNNYIYVS-INYIYVSNNYIYSLNAGDASDCADSNSDLVCMS 173
Y + S ++ S I+ I VS + + A S+ LV +
Sbjct: 187 TREYTWRSPDHGSRSRIDRILVSKRLRVKVKKTKITPGAGSDHRLVTLK 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.442
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,028,017
Number of extensions: 1104880
Number of successful extensions: 901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 40
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)