BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7535
         (199 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O67109|Y983_AQUAE Uncharacterized protein aq_983 OS=Aquifex aeolicus (strain VF5)
           GN=aq_983 PE=4 SV=1
          Length = 292

 Score = 38.1 bits (87), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 136 NLTHVHLMKRE--PPPECDTYNCRLTVKHLLKYCNKYQNIRSPNDLYACLLMFQ 187
           NL H  L+K E  P  E  T    L  + L KY  KY+  +S +D+YAC+ MF+
Sbjct: 187 NLNHTILIKEEDIPQKEPSTKAQELYFEILKKYLRKYRKEKSLHDVYACIAMFK 240


>sp|Q606K3|SYP_METCA Proline--tRNA ligase OS=Methylococcus capsulatus (strain ATCC 33009
           / NCIMB 11132 / Bath) GN=proS PE=3 SV=1
          Length = 583

 Score = 32.0 bits (71), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 10  LLPNYKQIFTDASKNE----HSVSSAFCCEETKFSVKLDPRISICNAELISIQYAISFII 65
           L P +++I TD ++NE      +   F   +TKF  ++ PR  +  A    ++ A SF +
Sbjct: 106 LGPTHEEIITDLARNELKSYRQLPVNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHL 165

Query: 66  STTPL-QVPTPKFVLYSDSLSAL 87
               L Q     +V YS+  S L
Sbjct: 166 DQESLAQTYDAMYVAYSNIFSRL 188


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,001,594
Number of Sequences: 539616
Number of extensions: 2494530
Number of successful extensions: 7094
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7090
Number of HSP's gapped (non-prelim): 8
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)