Query psy7535
Match_columns 199
No_of_seqs 164 out of 327
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:51:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.8 6.6E-18 2.2E-22 132.6 12.5 105 12-121 5-135 (154)
2 3h08_A RNH (ribonuclease H); R 99.7 2.9E-16 9.8E-21 121.9 9.9 104 13-123 3-130 (146)
3 2kq2_A Ribonuclease H-related 99.7 1.2E-16 4.3E-21 124.9 6.8 105 11-121 3-121 (147)
4 1jl1_A Ribonuclease HI; RNAse 99.6 3.1E-16 1.1E-20 123.4 8.7 103 13-123 3-129 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.6 5E-16 1.7E-20 122.7 9.9 103 13-123 5-131 (158)
6 3u3g_D Ribonuclease H, RNAse H 99.6 7.9E-16 2.7E-20 117.0 8.8 104 13-121 2-125 (140)
7 3hst_B Protein RV2228C/MT2287; 99.6 1.2E-15 4E-20 116.7 9.8 103 14-121 3-121 (141)
8 3qio_A GAG-POL polyprotein; RN 99.6 1.5E-15 5.3E-20 119.3 10.3 102 9-120 7-130 (150)
9 1ril_A Ribonuclease H; hydrola 99.6 5.3E-16 1.8E-20 123.6 6.1 104 13-123 7-134 (166)
10 3p1g_A Xenotropic murine leuke 99.6 3.1E-15 1.1E-19 119.5 10.0 99 14-120 23-134 (165)
11 2ehg_A Ribonuclease HI; RNAse 99.6 8E-15 2.7E-19 113.8 11.2 103 15-122 2-123 (149)
12 2lsn_A Reverse transcriptase; 99.5 1.2E-13 4.2E-18 110.3 11.6 103 13-121 6-141 (165)
13 2zd1_A Reverse transcriptase/r 99.5 2.1E-13 7.1E-18 126.6 11.8 100 12-121 437-544 (557)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.4 4.1E-13 1.4E-17 124.6 11.7 101 12-121 434-541 (555)
15 1zbf_A Ribonuclease H-related 99.3 2.3E-11 7.8E-16 94.9 9.4 77 12-94 9-90 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 4E-11 1.4E-15 92.7 5.3 77 12-94 3-84 (134)
17 1rw3_A POL polyprotein; RNA an 94.1 0.012 3.9E-07 52.8 0.8 73 14-94 346-429 (455)
18 2zd1_B P51 RT; P51/P66, hetero 80.7 1.8 6.3E-05 38.3 4.9 74 12-88 322-401 (428)
19 2fr5_A Cytidine deaminase; tet 74.8 5.3 0.00018 30.5 5.4 53 25-83 35-91 (146)
20 1uwz_A Cytidine deaminase; CDD 59.7 21 0.00071 26.6 5.9 52 26-83 24-79 (136)
21 2nx8_A TRNA-specific adenosine 59.3 17 0.00057 28.4 5.5 52 25-81 35-90 (179)
22 2a8n_A Cytidine and deoxycytid 57.6 16 0.00056 27.2 5.0 52 25-81 23-78 (144)
23 1wkq_A Guanine deaminase; doma 56.1 20 0.00068 27.6 5.4 52 25-81 31-86 (164)
24 2b3j_A TRNA adenosine deaminas 55.9 28 0.00094 26.5 6.1 52 25-81 26-81 (159)
25 2d30_A Cytidine deaminase; pur 55.1 23 0.00077 26.7 5.4 69 26-107 33-105 (141)
26 1wwr_A TRNA adenosine deaminas 55.0 22 0.00074 27.6 5.5 52 25-81 42-97 (171)
27 3dmo_A Cytidine deaminase; str 50.4 21 0.00072 26.9 4.5 70 27-107 33-106 (138)
28 1r5t_A Cytidine deaminase; zin 48.7 35 0.0012 25.5 5.6 54 25-83 31-88 (142)
29 1z3a_A TRNA-specific adenosine 45.7 32 0.0011 26.4 5.1 52 25-81 28-83 (168)
30 3r2n_A Cytidine deaminase; str 43.1 35 0.0012 25.6 4.8 51 27-83 32-86 (138)
31 3dh1_A TRNA-specific adenosine 42.7 66 0.0023 25.2 6.6 43 25-67 45-91 (189)
32 2z3g_A Blasticidin-S deaminase 39.6 44 0.0015 24.6 4.8 53 25-83 26-80 (130)
33 3mpz_A Cytidine deaminase; ssg 37.8 47 0.0016 25.3 4.8 51 27-83 47-101 (150)
34 3alr_A Nanos protein; zinc-fin 35.8 19 0.00065 26.0 2.1 25 150-174 73-97 (106)
35 2f6m_B Vacuolar protein sortin 30.9 30 0.001 25.1 2.5 17 51-67 31-47 (109)
36 2p22_B Vacuolar protein sortin 30.4 30 0.001 25.5 2.5 17 51-67 40-56 (118)
37 2g84_A Cytidine and deoxycytid 29.2 1.9E+02 0.0065 22.5 7.3 40 25-64 47-92 (197)
38 3j20_M 30S ribosomal protein S 27.6 1.5E+02 0.0052 22.1 6.1 34 41-80 49-82 (137)
39 2zd1_A Reverse transcriptase/r 27.6 81 0.0028 28.4 5.4 74 12-88 324-403 (557)
40 2caz_B Vacuolar protein sortin 27.5 35 0.0012 26.3 2.5 17 51-67 48-64 (155)
41 3oj6_A Blasticidin-S deaminase 26.3 83 0.0029 24.1 4.5 36 27-62 52-89 (158)
42 2qgp_A HNH endonuclease; Q39X4 24.6 21 0.00071 25.6 0.7 19 146-164 33-56 (112)
43 1l8d_A DNA double-strand break 23.5 19 0.00065 25.4 0.3 14 148-161 47-60 (112)
44 1a6b_B Momulv, zinc finger pro 22.4 49 0.0017 19.5 1.9 22 147-171 9-30 (40)
45 3r8n_K 30S ribosomal protein S 20.7 2.4E+02 0.0083 20.3 6.1 63 7-80 11-73 (117)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.76 E-value=6.6e-18 Score=132.58 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=84.5
Q ss_pred CCceEEEEcCCCCCC-c----eEEEEEEcCee---eEEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCc
Q psy7535 12 PNYKQIFTDASKNEH-S----VSSAFCCEETK---FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 83 (199)
Q Consensus 12 ~~~~~IyTDgSk~~~-~----~G~ai~~~~~~---~~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS 83 (199)
.+.+.||||||...+ + .|+|++..+.. .+..+++.+|++.||+.|++.||+.+.+. ...++.|+|||
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~-----~~~~v~i~tDS 79 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ-----NINKLVLYTNS 79 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT-----TCCEEEEEESC
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC-----CCceEEEEECc
Confidence 467899999998543 2 78888775432 55667778999999999999999999886 67899999999
Q ss_pred HHHHHHhhcCC---------------CC-cHHHHHHHHHHhc--ceEEecCCCCcc
Q psy7535 84 LSALQSLQNII---------------SS-SPIALEIINLLHK--IQCQVRPSHFNM 121 (199)
Q Consensus 84 ~sal~aI~n~~---------------~~-s~i~~~I~~ll~~--I~l~WiP~h~nR 121 (199)
+.+++.|.++. .+ .++.++|..++.+ |.|.|||+|.++
T Consensus 80 ~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~~~V~~H~g~ 135 (154)
T 2qkb_A 80 MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGF 135 (154)
T ss_dssp HHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSC
T ss_pred HHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEEEEccCCCCC
Confidence 99999998731 11 2578888888776 999999999863
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.66 E-value=2.9e-16 Score=121.91 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=76.6
Q ss_pred CceEEEEcCCCCCC--ceEEEEEEc--CeeeEE-ecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHHH
Q psy7535 13 NYKQIFTDASKNEH--SVSSAFCCE--ETKFSV-KLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSAL 87 (199)
Q Consensus 13 ~~~~IyTDgSk~~~--~~G~ai~~~--~~~~~~-~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sal 87 (199)
+.+.||||||...+ ..|+|++.. +....+ ...+.+|+..||+.|++.||+.+.+ ..++.|+|||+.++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~vi 75 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE-------PARVQLYSDSAYLV 75 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS-------CCEEEEEESCHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc-------cCcEEEEeChHHHH
Confidence 56899999998554 467776553 322222 1224689999999999999999853 47899999999999
Q ss_pred HHhhcCC----------------CC-cHHHHHHHHHHhc--ceEEecCCCCccch
Q psy7535 88 QSLQNII----------------SS-SPIALEIINLLHK--IQCQVRPSHFNMRE 123 (199)
Q Consensus 88 ~aI~n~~----------------~~-s~i~~~I~~ll~~--I~l~WiP~h~nR~~ 123 (199)
+.|.+.+ .. .++.++|..++.+ |.|.|+|+|.+|..
T Consensus 76 ~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~~~~V~gH~g~~~ 130 (146)
T 3h08_A 76 NAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKVKGHSDNPY 130 (146)
T ss_dssp HHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEEEEECCC-CCSHH
T ss_pred HHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceEEEEcCCcCCcHh
Confidence 9998720 11 2577888887775 99999999998543
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.65 E-value=1.2e-16 Score=124.85 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=77.2
Q ss_pred CCCceEEEEcCCCCCCceEEEEEEc--Cee--eEE-ec--CC--CcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEc
Q psy7535 11 LPNYKQIFTDASKNEHSVSSAFCCE--ETK--FSV-KL--DP--RISICNAELISIQYAISFIISTTPLQVPTPKFVLYS 81 (199)
Q Consensus 11 ~~~~~~IyTDgSk~~~~~G~ai~~~--~~~--~~~-~l--~~--~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~S 81 (199)
.++.+.||||||...+..|+|++.. +.. .+. +. +. .+|++.||+.|++.||+++.+. +. ++.|+|
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~-----~~-~v~I~t 76 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL-----GV-KIRILH 76 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH-----TC-CCCBSS
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC-----CC-eEEEEE
Confidence 4677899999999877788886653 332 222 23 32 3699999999999999998876 45 899999
Q ss_pred CcHHHHHHhhcCCC-CcHHHHHHHHHHh----cceEEecCCCCcc
Q psy7535 82 DSLSALQSLQNIIS-SSPIALEIINLLH----KIQCQVRPSHFNM 121 (199)
Q Consensus 82 DS~sal~aI~n~~~-~s~i~~~I~~ll~----~I~l~WiP~h~nR 121 (199)
||+.+.+.+.+.+. +++......+++. +|.|.|||+|.++
T Consensus 77 DS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~ 121 (147)
T 2kq2_A 77 DYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGN 121 (147)
T ss_dssp CCSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCC
T ss_pred CcHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCC
Confidence 99988887776554 3344444444433 4999999999974
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.65 E-value=3.1e-16 Score=123.43 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=76.9
Q ss_pred CceEEEEcCCCCCC--ceEEEEEEc--Ceee--EEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHH
Q psy7535 13 NYKQIFTDASKNEH--SVSSAFCCE--ETKF--SVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSA 86 (199)
Q Consensus 13 ~~~~IyTDgSk~~~--~~G~ai~~~--~~~~--~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sa 86 (199)
..+.||||||...+ ..|+|++.. +... +..+ +.+|++.||+.|++.||+.+.+ ..++.|+|||+.+
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~-------~~~v~I~tDS~~v 74 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE-------HAEVILSTDSQYV 74 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS-------CCEEEEEECCHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc-------CCcEEEEeCHHHH
Confidence 35789999999654 367776553 3222 2223 4679999999999999998853 3689999999999
Q ss_pred HHHhhcC--------C-------CC-cHHHHHHHHHHhc--ceEEecCCCCccch
Q psy7535 87 LQSLQNI--------I-------SS-SPIALEIINLLHK--IQCQVRPSHFNMRE 123 (199)
Q Consensus 87 l~aI~n~--------~-------~~-s~i~~~I~~ll~~--I~l~WiP~h~nR~~ 123 (199)
+++|..+ + .+ .++.++|..++.+ |.|.|||+|.+|..
T Consensus 75 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~ 129 (155)
T 1jl1_A 75 RQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPE 129 (155)
T ss_dssp HHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHH
T ss_pred HHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCCCCCHH
Confidence 9999861 1 12 2577788887775 99999999988543
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.65 E-value=5e-16 Score=122.69 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=76.9
Q ss_pred CceEEEEcCCCCCC--ceEEEEEEc--Cee--eEEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHH
Q psy7535 13 NYKQIFTDASKNEH--SVSSAFCCE--ETK--FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSA 86 (199)
Q Consensus 13 ~~~~IyTDgSk~~~--~~G~ai~~~--~~~--~~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sa 86 (199)
..+.||||||...+ ..|+|++.. +.. .+..+ +.+|++.||+.|++.||+.+.+ ..++.|+|||+.+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~v 76 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE-------PCKIILTSDSQYM 76 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS-------CCEEEEEECCHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc-------CCeEEEEeCHHHH
Confidence 46899999998643 467776653 322 22223 4589999999999999998742 2789999999999
Q ss_pred HHHhhc--------CC-------CCc-HHHHHHHHHHhc--ceEEecCCCCccch
Q psy7535 87 LQSLQN--------II-------SSS-PIALEIINLLHK--IQCQVRPSHFNMRE 123 (199)
Q Consensus 87 l~aI~n--------~~-------~~s-~i~~~I~~ll~~--I~l~WiP~h~nR~~ 123 (199)
+++|.+ .+ .++ ++.++|..++.+ |.|.|||+|.+|..
T Consensus 77 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~ 131 (158)
T 2e4l_A 77 RQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAE 131 (158)
T ss_dssp HHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHH
T ss_pred HHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCCCCchh
Confidence 999988 21 122 577788888776 99999999988543
No 6
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.63 E-value=7.9e-16 Score=116.99 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=77.8
Q ss_pred CceEEEEcCCCCCC--ceEEEEEEcC--eee--EE-ecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCC----cEEEEc
Q psy7535 13 NYKQIFTDASKNEH--SVSSAFCCEE--TKF--SV-KLDPRISICNAELISIQYAISFIISTTPLQVPTP----KFVLYS 81 (199)
Q Consensus 13 ~~~~IyTDgSk~~~--~~G~ai~~~~--~~~--~~-~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~----~i~I~S 81 (199)
+.+.||||||...+ ..|+|++..+ ... .+ +..+.+|++.||+.|++.||+++.+. +.. ++.|+|
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~-----~~~~~~~~v~i~t 76 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMF-----GDKLVDMEVEVRM 76 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGG-----GGGGTTCEEEEEE
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHc-----CCCCCCceEEEEe
Confidence 35789999998654 5677766543 221 22 22245899999999999999999876 455 899999
Q ss_pred CcHHHHHHhhcCCC-Cc----HHHHHHHHH-Hhc---ceEEecCCCCcc
Q psy7535 82 DSLSALQSLQNIIS-SS----PIALEIINL-LHK---IQCQVRPSHFNM 121 (199)
Q Consensus 82 DS~sal~aI~n~~~-~s----~i~~~I~~l-l~~---I~l~WiP~h~nR 121 (199)
||+.+++.+.+.+. ++ ++..+|..+ +.+ |.|.|+|...|.
T Consensus 77 DS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~ 125 (140)
T 3u3g_D 77 DSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNA 125 (140)
T ss_dssp SCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGH
T ss_pred ChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhH
Confidence 99999999998653 33 356677777 554 999999977663
No 7
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.2e-15 Score=116.68 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=77.8
Q ss_pred ceEEEEcCCCCCC--ceEEEEEEcC---ee--eEE-ecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHH
Q psy7535 14 YKQIFTDASKNEH--SVSSAFCCEE---TK--FSV-KLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLS 85 (199)
Q Consensus 14 ~~~IyTDgSk~~~--~~G~ai~~~~---~~--~~~-~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~s 85 (199)
.+.||||||...+ ..|+|++..+ .. ..+ ...+.+|++.||+.|++.||+++.+. +..++.|+|||+.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~-----~~~~v~i~tDS~~ 77 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKL-----GATEAAVLMDSKL 77 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHH-----TCSEEEEEESCHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHC-----CCceEEEEeChHH
Confidence 4789999998654 4677765532 11 122 22247899999999999999999987 7789999999999
Q ss_pred HHHHhhcCC-CCcH----HHHHHHHHHhc---ceEEecCCCCcc
Q psy7535 86 ALQSLQNII-SSSP----IALEIINLLHK---IQCQVRPSHFNM 121 (199)
Q Consensus 86 al~aI~n~~-~~s~----i~~~I~~ll~~---I~l~WiP~h~nR 121 (199)
+++.+.+.+ .+++ +..+|..++.+ |.|.|||...|.
T Consensus 78 vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~ 121 (141)
T 3hst_B 78 VVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNT 121 (141)
T ss_dssp HHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCH
T ss_pred HHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccH
Confidence 999999854 4443 45566666654 999999987773
No 8
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.63 E-value=1.5e-15 Score=119.30 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=75.7
Q ss_pred ccCCCceEEEEcCCCCCC--ceEEEEEEcCee-eEEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHH
Q psy7535 9 LLLPNYKQIFTDASKNEH--SVSSAFCCEETK-FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLS 85 (199)
Q Consensus 9 ~~~~~~~~IyTDgSk~~~--~~G~ai~~~~~~-~~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~s 85 (199)
.-.++.+.||||||...+ ..|+|++..+.. ..+.+ +.+|+..||+.|++.||+.+ ..++.|+|||+.
T Consensus 7 ~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~---------~~~v~i~tDS~~ 76 (150)
T 3qio_A 7 EPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS---------GLEVNIVTDSQY 76 (150)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS---------CSEEEEEESCHH
T ss_pred CCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeCcHH
Confidence 345667899999998543 367777665433 33333 57899999999999999974 367999999999
Q ss_pred HHHHhhcCC-----------C----C-cHHHHHHHHHHhc---ceEEecCCCCc
Q psy7535 86 ALQSLQNII-----------S----S-SPIALEIINLLHK---IQCQVRPSHFN 120 (199)
Q Consensus 86 al~aI~n~~-----------~----~-s~i~~~I~~ll~~---I~l~WiP~h~n 120 (199)
++++|.++. . + .++.+++.+++.+ |.|.|||+|.+
T Consensus 77 v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g 130 (150)
T 3qio_A 77 ALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKG 130 (150)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSC
T ss_pred HHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCC
Confidence 999998751 1 1 2456666665543 99999999985
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.61 E-value=5.3e-16 Score=123.62 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=77.5
Q ss_pred CceEEEEcCCCCCC--ceEEEEEEcC--eeeEEe-cCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHHH
Q psy7535 13 NYKQIFTDASKNEH--SVSSAFCCEE--TKFSVK-LDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSAL 87 (199)
Q Consensus 13 ~~~~IyTDgSk~~~--~~G~ai~~~~--~~~~~~-l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sal 87 (199)
..+.||||||...+ ..|+|++... ....+. ....+|++.||+.|++.||+.+.+ ..++.|+|||+.++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~-------~~~v~I~tDS~~vi 79 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE-------PCEVDLYTDSHYLK 79 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS-------CCEEEEECCCHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc-------CCeEEEEeChHHHH
Confidence 46789999999654 4677877642 222221 124689999999999999998754 24899999999999
Q ss_pred HHhhc----------CC------CCc-HHHHHHHHHHhc--ceEEecCCCCccch
Q psy7535 88 QSLQN----------II------SSS-PIALEIINLLHK--IQCQVRPSHFNMRE 123 (199)
Q Consensus 88 ~aI~n----------~~------~~s-~i~~~I~~ll~~--I~l~WiP~h~nR~~ 123 (199)
+.|.+ +. .++ ++.++|..++.+ |.|.|||+|.+|..
T Consensus 80 ~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~ 134 (166)
T 1ril_A 80 KAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPE 134 (166)
T ss_dssp HHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTH
T ss_pred HHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEEEeeCCCCchh
Confidence 99988 21 122 577888888776 99999999988543
No 10
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.60 E-value=3.1e-15 Score=119.47 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=71.7
Q ss_pred ceEEEEcCCCCC--CceEEEEEE--cCeee-EEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHHHH
Q psy7535 14 YKQIFTDASKNE--HSVSSAFCC--EETKF-SVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQ 88 (199)
Q Consensus 14 ~~~IyTDgSk~~--~~~G~ai~~--~~~~~-~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sal~ 88 (199)
.+.||||||... +..|+|++. .+... ...++..+|++.||+.|++.||+++ . ..++.|+|||+.+++
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~--~------~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA--E------GKKLNVYTDSRYAFA 94 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT--B------TSEEEEEECCHHHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc--c------CceEEEEEchHHHHh
Confidence 489999999953 335666433 33332 2256778899999999999999998 1 468999999999999
Q ss_pred HhhcCCC----Cc-HHHHHHHHHHhc---ceEEecCCCCc
Q psy7535 89 SLQNIIS----SS-PIALEIINLLHK---IQCQVRPSHFN 120 (199)
Q Consensus 89 aI~n~~~----~s-~i~~~I~~ll~~---I~l~WiP~h~n 120 (199)
+|..... ++ ++.+++...+.+ |.|+|||+|.+
T Consensus 95 ~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g 134 (165)
T 3p1g_A 95 TAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQK 134 (165)
T ss_dssp HHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCC
T ss_pred hhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCC
Confidence 9943222 22 456666554433 99999999995
No 11
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.59 E-value=8e-15 Score=113.82 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=78.4
Q ss_pred eEEEEcCCCC--C-CceEE-EEEEcC--ee-eEEe--cC---CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcC
Q psy7535 15 KQIFTDASKN--E-HSVSS-AFCCEE--TK-FSVK--LD---PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSD 82 (199)
Q Consensus 15 ~~IyTDgSk~--~-~~~G~-ai~~~~--~~-~~~~--l~---~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SD 82 (199)
+.||||||.. + +..|+ |++..+ .. ..+. +. ..+|++.||+.|++.||+.+.+. ...++.|+||
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~-----g~~~v~i~tD 76 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL-----GISSPIIKGD 76 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH-----TCCSCEEEES
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc-----CCCEEEEEeC
Confidence 5799999986 3 35675 755432 22 2222 22 37899999999999999999988 7789999999
Q ss_pred cHHHHHHhhcCCC-Cc----HHHHHHHHHHhc--ceEEecCCCCccc
Q psy7535 83 SLSALQSLQNIIS-SS----PIALEIINLLHK--IQCQVRPSHFNMR 122 (199)
Q Consensus 83 S~sal~aI~n~~~-~s----~i~~~I~~ll~~--I~l~WiP~h~nR~ 122 (199)
|+.+++.+.+++. ++ ++.+++..++++ |.|.|+|++.|..
T Consensus 77 S~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~~~N~~ 123 (149)
T 2ehg_A 77 SQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENKE 123 (149)
T ss_dssp CHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCGGGCHH
T ss_pred hHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCCcccHH
Confidence 9999999998743 22 567777777665 9999999988843
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.51 E-value=1.2e-13 Score=110.27 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=74.4
Q ss_pred CceEEEEcCCCCCC-c------eEEEEEEc--Ce--e--eEEecC-CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEE
Q psy7535 13 NYKQIFTDASKNEH-S------VSSAFCCE--ET--K--FSVKLD-PRISICNAELISIQYAISFIISTTPLQVPTPKFV 78 (199)
Q Consensus 13 ~~~~IyTDgSk~~~-~------~G~ai~~~--~~--~--~~~~l~-~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~ 78 (199)
..+.||||||+..| + .|+||+.. +. . ..+..+ +..+...||+.|+..||+.+.+. +.++.
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~------~~~v~ 79 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI------PGPVL 79 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS------SSCEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC------CCeEE
Confidence 34689999998433 2 68887653 21 1 233343 56788899999999999988764 45799
Q ss_pred EEcCcHHHHHHhhcC---------CC------Cc-HHHHHHHHHHhc---ceEEecCCCCcc
Q psy7535 79 LYSDSLSALQSLQNI---------IS------SS-PIALEIINLLHK---IQCQVRPSHFNM 121 (199)
Q Consensus 79 I~SDS~sal~aI~n~---------~~------~s-~i~~~I~~ll~~---I~l~WiP~h~nR 121 (199)
|+|||+.+++.|..+ .. ++ ++.+++.+++.+ |.|.|||+|.+.
T Consensus 80 I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~ 141 (165)
T 2lsn_A 80 VITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPT 141 (165)
T ss_dssp EEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCS
T ss_pred EEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCc
Confidence 999999999999642 11 22 567777776653 999999999863
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.47 E-value=2.1e-13 Score=126.63 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=77.4
Q ss_pred CCceEEEEcCCCCCC-c-eEEEEEEcCee-eEEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHHHH
Q psy7535 12 PNYKQIFTDASKNEH-S-VSSAFCCEETK-FSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQ 88 (199)
Q Consensus 12 ~~~~~IyTDgSk~~~-~-~G~ai~~~~~~-~~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sal~ 88 (199)
++...||||||...+ + .|+|++..+.. ..+. ...+|++.||+.|++.||+.+ ..++.|+|||+.+++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~-~~~~TNn~aEl~Ai~~aL~~~---------~~~v~I~tDS~~vi~ 506 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVP-LTNTTNQKTELQAIYLALQDS---------GLEVNIVTDSQYALG 506 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEE-ECSCCHHHHHHHHHHHHHHHS---------CSEEEEEECCHHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEec-CCCCCHHHHHHHHHHHHHHhC---------CCcEEEEeChHHHHH
Confidence 456899999998543 3 56776664433 3333 357899999999999999987 357999999999999
Q ss_pred HhhcCCCC--cHHHHHHHHHHhc---ceEEecCCCCcc
Q psy7535 89 SLQNIISS--SPIALEIINLLHK---IQCQVRPSHFNM 121 (199)
Q Consensus 89 aI~n~~~~--s~i~~~I~~ll~~---I~l~WiP~h~nR 121 (199)
+|+++..+ .++..++.+.+.+ |.|.|+|+|.++
T Consensus 507 ~i~~~~~~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~ 544 (557)
T 2zd1_A 507 IIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 544 (557)
T ss_dssp HHTTCCSEESSHHHHHHHHHHHHCSEEEEEECCSSSCC
T ss_pred HHhcCCccCCHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Confidence 99998765 4777777655543 999999999863
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.44 E-value=4.1e-13 Score=124.61 Aligned_cols=101 Identities=24% Similarity=0.256 Sum_probs=77.5
Q ss_pred CCceEEEEcCCCCCC--ceEEEEEEcCeeeEEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHHHHH
Q psy7535 12 PNYKQIFTDASKNEH--SVSSAFCCEETKFSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQS 89 (199)
Q Consensus 12 ~~~~~IyTDgSk~~~--~~G~ai~~~~~~~~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sal~a 89 (199)
++...||||||...+ ..|+|++.............+|++.||+.|++.||+. ...++.|+|||+.++++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~TNn~aEl~A~i~aL~~---------~~~~v~I~tDS~~v~~~ 504 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTD---------SGPKVNIIVDSQYVMGI 504 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEESSCCHHHHHHHHHHHHHHT---------SCSEEEEEESCHHHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccCCCCCHHHHHHHHHHHHHHc---------CCCeEEEEEehHHHHHH
Confidence 567899999998644 2677776654332222235789999999999999987 24689999999999999
Q ss_pred hhcCCC--CcHHHHHHHHHHhc---ceEEecCCCCcc
Q psy7535 90 LQNIIS--SSPIALEIINLLHK---IQCQVRPSHFNM 121 (199)
Q Consensus 90 I~n~~~--~s~i~~~I~~ll~~---I~l~WiP~h~nR 121 (199)
|+++.. ..++.+++.+++.+ |.|.|+|+|.++
T Consensus 505 i~~~~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~ 541 (555)
T 1mu2_A 505 VASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGI 541 (555)
T ss_dssp HHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCC
T ss_pred HhcccccccHHHHHHHHHHhccCCcEEEEEEECCCCC
Confidence 998654 34777777776543 999999999874
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.26 E-value=2.3e-11 Score=94.90 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=59.3
Q ss_pred CCceEEEEcCCCCCC--ceEEEEEEcC-e-eeEEecC-CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHH
Q psy7535 12 PNYKQIFTDASKNEH--SVSSAFCCEE-T-KFSVKLD-PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSA 86 (199)
Q Consensus 12 ~~~~~IyTDgSk~~~--~~G~ai~~~~-~-~~~~~l~-~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sa 86 (199)
++...||||||...+ ..|+|++... . ......+ ..+|+..||+.|++.||+++.+. .. ++.|+|||+.+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~-----~~-~v~i~tDS~~v 82 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKER-----NS-RKPIYSNSQTA 82 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHT-----TC-CCCEEESCHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhC-----CC-eEEEEEehHHH
Confidence 456789999998544 4678877642 2 2222222 36899999999999999999886 44 89999999999
Q ss_pred HHHhhcCC
Q psy7535 87 LQSLQNII 94 (199)
Q Consensus 87 l~aI~n~~ 94 (199)
++.+++.+
T Consensus 83 i~w~~~~~ 90 (142)
T 1zbf_A 83 IKWVKDKK 90 (142)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99999876
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.13 E-value=4e-11 Score=92.74 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=56.4
Q ss_pred CCceEEEEcCCCCCC-c-eEE-EEEEcCee-eEEe-cCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHH
Q psy7535 12 PNYKQIFTDASKNEH-S-VSS-AFCCEETK-FSVK-LDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSA 86 (199)
Q Consensus 12 ~~~~~IyTDgSk~~~-~-~G~-ai~~~~~~-~~~~-l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sa 86 (199)
|+...||||||...+ | .|. ||+..+.. .... -.+.+|+..||++|++.||+.+.+. ... +.|+|||+.+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~-----~~~-v~i~tDSqyV 76 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKER-----NSR-KPIYSNSQTA 76 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHT-----TCC-CCEEESCHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhC-----CCC-EEEEcchHHH
Confidence 567789999998443 3 566 34443322 2221 1247899999999999999999875 333 7999999999
Q ss_pred HHHhhcCC
Q psy7535 87 LQSLQNII 94 (199)
Q Consensus 87 l~aI~n~~ 94 (199)
++.|++..
T Consensus 77 i~wi~~~~ 84 (134)
T 4htu_A 77 IKWVKDKK 84 (134)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99998753
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=94.12 E-value=0.012 Score=52.82 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=48.5
Q ss_pred ceEEEEcCCCCCCceEEEEEEcC----ee----eEEecC---CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcC
Q psy7535 14 YKQIFTDASKNEHSVSSAFCCEE----TK----FSVKLD---PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSD 82 (199)
Q Consensus 14 ~~~IyTDgSk~~~~~G~ai~~~~----~~----~~~~l~---~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SD 82 (199)
...+|||||. .++|+ |+... .. .+-++. ...|++..|+.||..|++..... -....+.|+||
T Consensus 346 ~~~l~~DAS~--~~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~y----l~g~~~~v~tD 418 (455)
T 1rw3_A 346 PFELFVDEKQ--GYAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKL----TMGQPLVIKAP 418 (455)
T ss_dssp TTSCEEEEEE--CSSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGG----GCSSCEEEECS
T ss_pred cEEEEEeccC--Cccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHH----cCCCcEEEEec
Confidence 4579999985 33443 33321 11 122332 46789999999999999998764 24568999999
Q ss_pred cHHHHHHhhcCC
Q psy7535 83 SLSALQSLQNII 94 (199)
Q Consensus 83 S~sal~aI~n~~ 94 (199)
+. ++.-+.++.
T Consensus 419 h~-~~~~l~~~~ 429 (455)
T 1rw3_A 419 HA-VEALVKQPP 429 (455)
T ss_dssp SC-TTTTSSSTT
T ss_pred Ch-HHHHhCCCc
Confidence 96 666665543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=80.72 E-value=1.8 Score=38.31 Aligned_cols=74 Identities=4% Similarity=-0.220 Sum_probs=43.5
Q ss_pred CCceEEEEcCCCCCCceEEEEEEcCe-e----eEEecCCCcchhHHHHHH-HHHHHHHHHhhCCCCCCCCcEEEEcCcHH
Q psy7535 12 PNYKQIFTDASKNEHSVSSAFCCEET-K----FSVKLDPRISICNAELIS-IQYAISFIISTTPLQVPTPKFVLYSDSLS 85 (199)
Q Consensus 12 ~~~~~IyTDgSk~~~~~G~ai~~~~~-~----~~~~l~~~~Si~tAEl~A-I~~AL~~i~~~~~~~~~~~~i~I~SDS~s 85 (199)
.....+|||||.. +...|++..+. . ..+.-....+.+.-|++| |..||+...... -+..+..++++||.+.
T Consensus 322 ~~~~~l~~das~~--g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl-~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ--GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-WGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET--TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHH-HSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC--CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEE-ECCCCcEECCccHHHH
Confidence 3456999999962 23223333222 1 233323445666777778 999998754320 0234566788899987
Q ss_pred HHH
Q psy7535 86 ALQ 88 (199)
Q Consensus 86 al~ 88 (199)
..-
T Consensus 399 ~~~ 401 (428)
T 2zd1_B 399 ETW 401 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=74.77 E-value=5.3 Score=30.45 Aligned_cols=53 Identities=21% Similarity=0.021 Sum_probs=35.7
Q ss_pred CCceEEEEEEcCeeeEEecCCCc----chhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCc
Q psy7535 25 EHSVSSAFCCEETKFSVKLDPRI----SICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 83 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~~~----Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS 83 (199)
+-.||+|++..+.+...+-.-+. .---||..||..|... -. .....+.|++|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~-----~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GY-----KDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TC-----CCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CC-----CceEEEEEEeCC
Confidence 34799999987766444443222 2245999999999864 21 256788888875
No 20
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=59.74 E-value=21 Score=26.60 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=35.2
Q ss_pred CceEEEEEEcCeeeEEecC----CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCc
Q psy7535 26 HSVSSAFCCEETKFSVKLD----PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 83 (199)
Q Consensus 26 ~~~G~ai~~~~~~~~~~l~----~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS 83 (199)
-.||++++..+.+...+-. .+...--||..||..|... -. .....+++++|+
T Consensus 24 ~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~-----~~~~~~~l~~~~ 79 (136)
T 1uwz_A 24 FQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GD-----TEFQMLAVAADT 79 (136)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TC-----CCEEEEEEEESC
T ss_pred CCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CC-----CCeEEEEEEeCC
Confidence 3799999987665434432 2223456999999999875 22 256788888875
No 21
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=59.29 E-value=17 Score=28.44 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=33.3
Q ss_pred CCceEEEEEEcCeeeEEecCC----CcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEc
Q psy7535 25 EHSVSSAFCCEETKFSVKLDP----RISICNAELISIQYAISFIISTTPLQVPTPKFVLYS 81 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~----~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~S 81 (199)
+..+|+.++..+.-...+-.. ....--||..||..|-+..... .....++|+
T Consensus 35 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~-----~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNW-----RLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----CCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCC-----cccceEEEE
Confidence 557999988755444333322 1224569999999998776443 455677776
No 22
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=57.60 E-value=16 Score=27.17 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCceEEEEEEcCeeeEEecCCC----cchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEc
Q psy7535 25 EHSVSSAFCCEETKFSVKLDPR----ISICNAELISIQYAISFIISTTPLQVPTPKFVLYS 81 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~~----~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~S 81 (199)
+..+|+.++.++.-...+-... ...--||..||..|.+..... .....++|+
T Consensus 23 ~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~-----~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQE-----RLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCS-----CCTTCEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCC-----ccCCeEEEE
Confidence 5579999987444333333221 123459999999998765433 344566665
No 23
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=56.08 E-value=20 Score=27.61 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=33.2
Q ss_pred CCceEEEEEEcCeeeEEecCC----CcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEc
Q psy7535 25 EHSVSSAFCCEETKFSVKLDP----RISICNAELISIQYAISFIISTTPLQVPTPKFVLYS 81 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~----~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~S 81 (199)
+..+|+.++..+.-...+-.. ....--||..||..|-+.+... .....++|+
T Consensus 31 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~-----~l~g~tlYv 86 (164)
T 1wkq_A 31 GGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAY-----QLDDCILYT 86 (164)
T ss_dssp SSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----SCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCC-----CcCceEEEE
Confidence 567999988654443333321 1224569999999998765443 455677776
No 24
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=55.90 E-value=28 Score=26.45 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCceEEEEEEcCeeeEEecCC----CcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEc
Q psy7535 25 EHSVSSAFCCEETKFSVKLDP----RISICNAELISIQYAISFIISTTPLQVPTPKFVLYS 81 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~----~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~S 81 (199)
+..+|+.++.++.-...+-.. ....--||..||..|.+..... .....++|+
T Consensus 26 ~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~-----~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSW-----RLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----CCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCC-----CcceeEEEE
Confidence 557999988754444333322 1233569999999998765443 455677776
No 25
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=55.10 E-value=23 Score=26.72 Aligned_cols=69 Identities=13% Similarity=0.026 Sum_probs=43.4
Q ss_pred CceEEEEEEcCeeeEEecC----CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHHHHHhhcCCCCcHHHH
Q psy7535 26 HSVSSAFCCEETKFSVKLD----PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQSLQNIISSSPIAL 101 (199)
Q Consensus 26 ~~~G~ai~~~~~~~~~~l~----~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sal~aI~n~~~~s~i~~ 101 (199)
-+||+|++..+.+...+-. .+..---||..||.+|...= ......+.|.+|.. .+-.+-..=+
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G------~~~~~aiav~~~~~-------~~~~PCG~CR 99 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG------DKEFVAIAIVADTK-------RPVPPCGACR 99 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT------CCCEEEEEEEESCS-------SCCCCCHHHH
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC------CCceEEEEEEeCCC-------CccCcCHHHH
Confidence 3799999988776555443 22223459999999998641 12567788888863 2334555555
Q ss_pred HHHHHH
Q psy7535 102 EIINLL 107 (199)
Q Consensus 102 ~I~~ll 107 (199)
+....+
T Consensus 100 Q~l~E~ 105 (141)
T 2d30_A 100 QVMVEL 105 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544444
No 26
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=54.99 E-value=22 Score=27.59 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=32.8
Q ss_pred CCceEEEEEEcCeeeEEecCC----CcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEc
Q psy7535 25 EHSVSSAFCCEETKFSVKLDP----RISICNAELISIQYAISFIISTTPLQVPTPKFVLYS 81 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~----~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~S 81 (199)
+..+|+.++.++.-...+-.. ....--||..||..|.+..... .....++|+
T Consensus 42 ~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~-----~l~~~tlYv 97 (171)
T 1wwr_A 42 EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTK-----YLEGCELYV 97 (171)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCS-----CCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCC-----ccCceEEEE
Confidence 557999998744444333322 1123459999999998865433 455677775
No 27
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=50.36 E-value=21 Score=26.90 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=43.7
Q ss_pred ceEEEEEEcCeeeEEecCCCcch----hHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCcHHHHHHhhcCCCCcHHHHH
Q psy7535 27 SVSSAFCCEETKFSVKLDPRISI----CNAELISIQYAISFIISTTPLQVPTPKFVLYSDSLSALQSLQNIISSSPIALE 102 (199)
Q Consensus 27 ~~G~ai~~~~~~~~~~l~~~~Si----~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS~sal~aI~n~~~~s~i~~~ 102 (199)
+||+|+...|.+...+-.-+... --||..||.+|+..-. ++.....+.|.+|+. .+-.+-..=|+
T Consensus 33 ~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~----~~~~i~aiavv~~~~-------~~~~PCG~CRQ 101 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGY----RPGEFAAIAVVGETH-------GPIAPCGACRQ 101 (138)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC----CTTCEEEEEEEESCS-------SSCCCCHHHHH
T ss_pred CEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCC----CcccEEEEEEEcCCC-------CccCCCHHHHH
Confidence 79999999988866665433322 3599999999985311 111456778888863 33445555554
Q ss_pred HHHHH
Q psy7535 103 IINLL 107 (199)
Q Consensus 103 I~~ll 107 (199)
....+
T Consensus 102 ~l~Ef 106 (138)
T 3dmo_A 102 VMIEL 106 (138)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44333
No 28
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=48.71 E-value=35 Score=25.50 Aligned_cols=54 Identities=11% Similarity=-0.015 Sum_probs=35.2
Q ss_pred CCceEEEEEEcCeeeEEecC----CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCc
Q psy7535 25 EHSVSSAFCCEETKFSVKLD----PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 83 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~----~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS 83 (199)
+-+||+|+...+.+...+-. .+..---||..||..|...-. ......+.|.+|+
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~-----~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGH-----RSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC-----CSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCC-----CCceEEEEEEeCC
Confidence 34799999887776544443 222234599999999886321 1126788899875
No 29
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=45.72 E-value=32 Score=26.42 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=31.8
Q ss_pred CCceEEEEEEcCeeeEEecCC----CcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEc
Q psy7535 25 EHSVSSAFCCEETKFSVKLDP----RISICNAELISIQYAISFIISTTPLQVPTPKFVLYS 81 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~----~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~S 81 (199)
+..+|+.++..+.-...+-.. ....--||..||..|.+..... .....++|+
T Consensus 28 ~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~-----~l~~~tlYv 83 (168)
T 1z3a_A 28 EVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNY-----RLIDATLYV 83 (168)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----CCTTCEEEE
T ss_pred CCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCC-----cccccEEEE
Confidence 457999988654444333321 1223569999999998776433 344556665
No 30
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=43.13 E-value=35 Score=25.58 Aligned_cols=51 Identities=10% Similarity=-0.113 Sum_probs=33.2
Q ss_pred ceEEEEEEcCeeeEEecCCCcc----hhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCc
Q psy7535 27 SVSSAFCCEETKFSVKLDPRIS----ICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 83 (199)
Q Consensus 27 ~~G~ai~~~~~~~~~~l~~~~S----i~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS 83 (199)
.||+|++..+.+...+-.-+.. ---||..||.+|+..-. .....+.|.+|.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G~------~~i~aiav~~~~ 86 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGG------GRLVAVYCVDGN 86 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC------CCEEEEEEECTT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcCC------CceEEEEEEcCC
Confidence 7999999888775555432221 23499999999976421 244556677663
No 31
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=42.72 E-value=66 Score=25.20 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCceEEEEEEcCeeeEEecCC----CcchhHHHHHHHHHHHHHHHhh
Q psy7535 25 EHSVSSAFCCEETKFSVKLDP----RISICNAELISIQYAISFIIST 67 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~~----~~Si~tAEl~AI~~AL~~i~~~ 67 (199)
+..+|+.++..+.-...+-.. ....--||..||..|.+.+.+.
T Consensus 45 ~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~ 91 (189)
T 3dh1_A 45 EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQS 91 (189)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhc
Confidence 457999888755544444332 3345569999999998876543
No 32
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=39.58 E-value=44 Score=24.57 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=34.7
Q ss_pred CCceEEEEEEcCeeeEEecC--CCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCc
Q psy7535 25 EHSVSSAFCCEETKFSVKLD--PRISICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 83 (199)
Q Consensus 25 ~~~~G~ai~~~~~~~~~~l~--~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS 83 (199)
+-.||+|++..+.+...+-. .+..-.-||..||.+|... - ......+++++|.
T Consensus 26 ~f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G-----~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 26 DYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-A-----AGNLTCIVAIGNE 80 (130)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-T-----CCCEEEEEEEETT
T ss_pred CCCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-C-----CCceEEEEEEECC
Confidence 34799999987765433332 2333456999999999863 1 1256677888874
No 33
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=37.84 E-value=47 Score=25.34 Aligned_cols=51 Identities=10% Similarity=-0.164 Sum_probs=34.5
Q ss_pred ceEEEEEEcCeeeEEecCCCcc----hhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEcCc
Q psy7535 27 SVSSAFCCEETKFSVKLDPRIS----ICNAELISIQYAISFIISTTPLQVPTPKFVLYSDS 83 (199)
Q Consensus 27 ~~G~ai~~~~~~~~~~l~~~~S----i~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~SDS 83 (199)
+||+|+...+.+...+-.-+.. ---||..||.+|+..- ......+.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G------~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG------GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT------CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC------CCceEEEEEEcCC
Confidence 7999999988876665432222 2349999999998742 1245667777764
No 34
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=35.81 E-value=19 Score=26.00 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.3
Q ss_pred CcccCCccccccchhhcccchhhhc
Q psy7535 150 ECDTYNCRLTVKHLLKYCNKYQNIR 174 (199)
Q Consensus 150 ~C~~Cg~~~tv~Hil~~Cp~~~~~R 174 (199)
.|+.||+...-.|-.-.||+.....
T Consensus 73 ~CpiCGATGd~AHT~kYCP~~~~~~ 97 (106)
T 3alr_A 73 KCPLCGATGAKAHTKRFCPMVDKNY 97 (106)
T ss_dssp CCTTTCCCGGGCCCGGGCTTCGGGG
T ss_pred cCCCCCCcCCcccceecCCCCCCcc
Confidence 6999999999999999999987654
No 35
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=30.87 E-value=30 Score=25.13 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy7535 51 NAELISIQYAISFIIST 67 (199)
Q Consensus 51 tAEl~AI~~AL~~i~~~ 67 (199)
-||++||+.||+.+.+.
T Consensus 31 LAelYSII~tle~LEkA 47 (109)
T 2f6m_B 31 LSEIYSIVITLDHVEKA 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 59999999999999874
No 36
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=30.45 E-value=30 Score=25.46 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy7535 51 NAELISIQYAISFIIST 67 (199)
Q Consensus 51 tAEl~AI~~AL~~i~~~ 67 (199)
-||++||+.||+.+.+.
T Consensus 40 LAeLYSII~tle~LEKA 56 (118)
T 2p22_B 40 LSEIYSIVITLDHVEKA 56 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999999875
No 37
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=29.24 E-value=1.9e+02 Score=22.49 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=26.1
Q ss_pred CCceEEEEEEcC--eeeEEecC----CCcchhHHHHHHHHHHHHHH
Q psy7535 25 EHSVSSAFCCEE--TKFSVKLD----PRISICNAELISIQYAISFI 64 (199)
Q Consensus 25 ~~~~G~ai~~~~--~~~~~~l~----~~~Si~tAEl~AI~~AL~~i 64 (199)
+..+|+.+|.++ .-...+-. .....--||..||..|-+.+
T Consensus 47 ~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 92 (197)
T 2g84_A 47 GGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKL 92 (197)
T ss_dssp CCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHc
Confidence 356888888744 33333322 33445679999999988765
No 38
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.64 E-value=1.5e+02 Score=22.09 Aligned_cols=34 Identities=12% Similarity=-0.152 Sum_probs=21.6
Q ss_pred EecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7535 41 VKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLY 80 (199)
Q Consensus 41 ~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~ 80 (199)
|+-....|.|.|.+.|. .|.+.+.+. ....+-|.
T Consensus 49 fkg~~ksTp~AA~~aa~-~~~~~a~e~-----Gi~~v~V~ 82 (137)
T 3j20_M 49 KADRDEPSPYAAMLAAR-RAAEEALEK-----GIVGVHIR 82 (137)
T ss_dssp SCTTTSSSHHHHHHHHH-HHHHHHHHH-----TEEEEEEE
T ss_pred ecCCccCCHHHHHHHHH-HHHHHHHHc-----CCeEEEEE
Confidence 44457889999998884 444455555 44555544
No 39
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=27.58 E-value=81 Score=28.43 Aligned_cols=74 Identities=11% Similarity=-0.106 Sum_probs=42.5
Q ss_pred CCceEEEEcCCCCCCceEEEEEEcCee----eEEecCCCcchhHHHHHH-HHHHHHHHHhhCCCCCCCCcEEE-EcCcHH
Q psy7535 12 PNYKQIFTDASKNEHSVSSAFCCEETK----FSVKLDPRISICNAELIS-IQYAISFIISTTPLQVPTPKFVL-YSDSLS 85 (199)
Q Consensus 12 ~~~~~IyTDgSk~~~~~G~ai~~~~~~----~~~~l~~~~Si~tAEl~A-I~~AL~~i~~~~~~~~~~~~i~I-~SDS~s 85 (199)
.....+|||+|.. +.+|+.+..++.. ..+......+.+.-|++| +..||+...-.. ......+.+ ++|++.
T Consensus 324 ~~~~~l~~das~~-g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l--~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 324 SKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI--WGKTPKFKLPIQKETW 400 (557)
T ss_dssp TSCCEEEEEEEET-TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHH--HSSCCEEEESBCHHHH
T ss_pred CCCEEEEEecCCC-CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEE--eCCCCCEECCCcHHHH
Confidence 3456899999963 2235444443321 233434566777889999 999988743220 011225666 788775
Q ss_pred HHH
Q psy7535 86 ALQ 88 (199)
Q Consensus 86 al~ 88 (199)
...
T Consensus 401 ~~~ 403 (557)
T 2zd1_A 401 ETW 403 (557)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 40
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=27.55 E-value=35 Score=26.29 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy7535 51 NAELISIQYAISFIIST 67 (199)
Q Consensus 51 tAEl~AI~~AL~~i~~~ 67 (199)
-||++||+.||+.+.+.
T Consensus 48 LAeLYSII~tLE~LEKA 64 (155)
T 2caz_B 48 LSEIYSIVITLDHVEKA 64 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999999875
No 41
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=26.27 E-value=83 Score=24.09 Aligned_cols=36 Identities=22% Similarity=0.128 Sum_probs=25.1
Q ss_pred ceEEEEEEcCeeeEEecC--CCcchhHHHHHHHHHHHH
Q psy7535 27 SVSSAFCCEETKFSVKLD--PRISICNAELISIQYAIS 62 (199)
Q Consensus 27 ~~G~ai~~~~~~~~~~l~--~~~Si~tAEl~AI~~AL~ 62 (199)
+||+|+...+.+...+-. .+..---||..||.+|+.
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs 89 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAA 89 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHH
Confidence 699999988876544432 222223599999999985
No 42
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=24.57 E-value=21 Score=25.59 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=14.6
Q ss_pred CCCCCcccCCcc-----ccccchh
Q psy7535 146 EPPPECDTYNCR-----LTVKHLL 164 (199)
Q Consensus 146 ~~~p~C~~Cg~~-----~tv~Hil 164 (199)
.+...|..||.. .+|.||+
T Consensus 33 r~~~~C~yCg~~~~~~~~~vDHIi 56 (112)
T 2qgp_A 33 IARGICHYCGEIFPPEELTMDHLV 56 (112)
T ss_dssp HHHTBCTTTCCBCCGGGEEEEESS
T ss_pred HcCCcCCCCCCcCCCCCcEEEEEe
Confidence 345789999965 5789987
No 43
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.47 E-value=19 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=10.7
Q ss_pred CCCcccCCcccccc
Q psy7535 148 PPECDTYNCRLTVK 161 (199)
Q Consensus 148 ~p~C~~Cg~~~tv~ 161 (199)
...||.||.+++-.
T Consensus 47 g~~CPvCgs~l~~~ 60 (112)
T 1l8d_A 47 KGKCPVCGRELTDE 60 (112)
T ss_dssp SEECTTTCCEECHH
T ss_pred CCCCCCCCCcCCHH
Confidence 45699999887754
No 44
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=22.37 E-value=49 Score=19.48 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.7
Q ss_pred CCCCcccCCccccccchhhcccchh
Q psy7535 147 PPPECDTYNCRLTVKHLLKYCNKYQ 171 (199)
Q Consensus 147 ~~p~C~~Cg~~~tv~Hil~~Cp~~~ 171 (199)
+...|-.||.. .|+--+||+-.
T Consensus 9 ~~~~C~~Cgk~---GH~ardCP~~~ 30 (40)
T 1a6b_B 9 DRDQCAYCKEK---GHWAKDCPKKP 30 (40)
T ss_dssp CSSSCSSSCCT---TCCTTSCSSSC
T ss_pred CCCeeeECCCC---CcchhhCcCCc
Confidence 35679999876 89999999843
No 45
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=20.70 E-value=2.4e+02 Score=20.27 Aligned_cols=63 Identities=10% Similarity=-0.017 Sum_probs=37.2
Q ss_pred hcccCCCceEEEEcCCCCCCceEEEEEEcCeeeEEecCCCcchhHHHHHHHHHHHHHHHhhCCCCCCCCcEEEE
Q psy7535 7 IPLLLPNYKQIFTDASKNEHSVSSAFCCEETKFSVKLDPRISICNAELISIQYAISFIISTTPLQVPTPKFVLY 80 (199)
Q Consensus 7 i~~~~~~~~~IyTDgSk~~~~~G~ai~~~~~~~~~~l~~~~Si~tAEl~AI~~AL~~i~~~~~~~~~~~~i~I~ 80 (199)
|...+.|.+.-.||-++..- .+.-.....|+-....|.|.|.+.| ..|.+.+.+. ....+-|.
T Consensus 11 I~as~NNTivtiTD~~G~~i-----~~~S~G~~gfKg~rk~tp~AA~~aa-~~~~~~~~~~-----Gi~~v~v~ 73 (117)
T 3r8n_K 11 IHASFNNTIVTITDRQGNAL-----GWATAGGSGFRGSRKSTPFAAQVAA-ERCADAVKEY-----GIKNLEVM 73 (117)
T ss_dssp EEECSSCEEEEEECTTSCCS-----EEEETGGGSCCGGGGSSHHHHHHHH-HHHHHHHTTS-----CCCEEEEE
T ss_pred EEcccCCEEEEEEcCCCCEE-----EEEcCCccccCCCccCCHHHHHHHH-HHHHHHHHHh-----CCcEEEEE
Confidence 44566777888888766421 1111112234555688999997766 4455566655 56666665
Done!