RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7535
         (199 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 41/107 (38%)

Query: 72  VPTPKFVLYSDSLSALQ------------------SLQN-----IISSSPIALEIINL-L 107
           VP+P   + + +   +Q                  SL N     ++S  P +L  +NL L
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393

Query: 108 HKIQC-----QVR-PSHFNMREQVSLTR-LRIG---HTNLTHVHLMK 144
            K +      Q R P  F+ R+     R L +    H+     HL+ 
Sbjct: 394 RKAKAPSGLDQSRIP--FSERKLKFSNRFLPVASPFHS-----HLLV 433



 Score = 32.7 bits (74), Expect = 0.068
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 29/100 (29%)

Query: 53  ELISIQYAIS------FIISTTPL-----QVPTPKFVLYSDSLSALQSLQN--------I 93
           EL  + Y          I  +        +       +++  L+ L+ L+N         
Sbjct: 172 ELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230

Query: 94  ISSSPIALEIINLL---H-KIQCQV---RPSHFNMREQVS 126
           + S PI+  +I ++   H  +  ++    P    +R  + 
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPG--ELRSYLK 268



 Score = 32.7 bits (74), Expect = 0.086
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 35/110 (31%)

Query: 24   NEHSVSSAFCCEETKFSVKLDPRISICNAELISI--------QYAISFIISTTPLQVPTP 75
            N   V+++F  E  ++ V+   R+      L+ I        QY  +             
Sbjct: 1813 NPGRVAASFSQEALQYVVE---RVGKRTGWLVEIVNYNVENQQYVAA------------- 1856

Query: 76   KFVLYSDSLSALQSLQNIISSSPIALEIINLLHKIQCQVRPSHFNMREQV 125
                    L AL ++ N+++   I L+ I++   I+ Q   S   +   +
Sbjct: 1857 ------GDLRALDTVTNVLNF--IKLQKIDI---IELQKSLSLEEVEGHL 1895


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.6 bits (81), Expect = 0.008
 Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 46/183 (25%)

Query: 13  NYKQIFTDASKNEHSVSSAFCCEETKFSVK-LDPRISICNAELISIQY---AISFIISTT 68
           N+K +  D  K    + S         S+  L+P             +   ++ F     
Sbjct: 346 NWKHVNCD--KLTTIIES---------SLNVLEP-------AEYRKMFDRLSV-F----- 381

Query: 69  PLQVPTPKFVL--------YSDSLSALQSLQNIISSSPIALEIINL---LHKIQCQVRPS 117
           P     P  +L         SD +  +  L      S +  +       +  I  +++  
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISIPSIYLELKV- 437

Query: 118 HFNMREQVSLTRLRIGHTNLTHVHLMKREPPPECDTYNCRLTVKHLLKYCNKYQNIRSPN 177
              +  + +L R  + H N+          PP  D Y       H LK     + +    
Sbjct: 438 --KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFR 494

Query: 178 DLY 180
            ++
Sbjct: 495 MVF 497


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,761,024
Number of extensions: 144957
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 17
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)