RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7535
         (199 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 26.3 bits (57), Expect = 3.2
 Identities = 18/157 (11%), Positives = 40/157 (25%), Gaps = 6/157 (3%)

Query: 15  KQIFTDASKNEHSVSSAFCCEETKFSVKLDPRISICNAELISIQYAISFIISTTPLQVPT 74
           + +       + +V             K          +  + + A+ F   +  +   +
Sbjct: 255 RLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS 314

Query: 75  PKFVLYSDSLSALQSLQNIISSSPIALEIINLLHKIQ-CQVRPSHFNMREQVSLTRLRIG 133
              +L    + A   L   +      L  + L           SH  ++  +      + 
Sbjct: 315 EPNLL----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK 370

Query: 134 HTNLTHVHLMKREPPPE-CDTYNCRLTVKHLLKYCNK 169
                 V     +     CD  N +  V  +L Y   
Sbjct: 371 TERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET 407


>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
           different strains [TaxId: 11520]}
          Length = 390

 Score = 26.0 bits (57), Expect = 3.6
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 131 RIGHTNLTHVHLMKREPPPECDTYNCR---LTVKHLL--KYCNKYQNIRSPNDLYACLLM 185
           R G        L+ REP   C    C+   LT        Y N  +  R+       L+ 
Sbjct: 26  RFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNK---LRHLIS 82

Query: 186 FQI 188
            ++
Sbjct: 83  VKL 85


>d1rooa_ g.19.1.1 (A:) Sea anemone toxin k {Sun anemone
           (Stichodactyla helianthus), SHK [TaxId: 6123]}
          Length = 35

 Score = 23.5 bits (50), Expect = 4.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 147 PPPECDTYNCRLTVKHLLKYCNK 169
           P   C  + C+ ++K+ L +C K
Sbjct: 8   PKSRCTAFQCKHSMKYRLSFCRK 30


>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Candida albicans [TaxId:
           5476]}
          Length = 322

 Score = 25.1 bits (54), Expect = 7.6
 Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 2/52 (3%)

Query: 129 RLRIGHTNLTHVHLMKREPPPECDTYNCRLTVKHLLKYCNKYQNIRSPNDLY 180
            +   HT  TH          +   +           +  +  + R+ + L 
Sbjct: 11  DINFVHTTDTHGWYS--GHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLL 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,611
Number of extensions: 29811
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 8
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)