Query psy7536
Match_columns 265
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 20:52:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kz5_E Protein SOPB; partition 33.3 13 0.00044 26.2 0.8 29 69-97 19-48 (52)
2 2lwx_A Zuotin; J-protein, mole 29.2 79 0.0027 24.7 4.8 62 37-98 29-99 (108)
3 4gmq_A Putative ribosome assoc 27.6 56 0.0019 25.3 3.6 35 38-72 18-59 (103)
4 2ee7_A Sperm flagellar protein 26.6 62 0.0021 24.8 3.7 43 40-87 45-101 (127)
5 3fdq_A Motility gene repressor 25.1 39 0.0013 28.2 2.5 31 139-169 11-41 (170)
6 4fla_A Regulation of nuclear P 22.6 2.5E+02 0.0085 21.9 6.6 38 103-140 69-106 (152)
7 3hma_A N-acetylmuramoyl-L-alan 21.5 45 0.0015 25.2 2.0 20 36-56 111-130 (157)
8 3oja_B Anopheles plasmodium-re 20.8 1.5E+02 0.0052 24.9 5.3 25 226-250 546-570 (597)
9 3qfa_C Thioredoxin; protein-pr 20.4 72 0.0025 20.8 2.6 30 18-47 3-32 (116)
10 3ajm_A Programmed cell death p 19.3 44 0.0015 28.5 1.7 36 34-75 128-163 (213)
No 1
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=33.34 E-value=13 Score=26.25 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=21.8
Q ss_pred hhhhhccCCChhhh-HHHHHhhHHHHhhcc
Q psy7536 69 KHEEAKFNVDSDKI-DSLIKKSEEILESKK 97 (265)
Q Consensus 69 kheeakfnvdsdki-dslikkseeileskk 97 (265)
|-.-.-||+|+.+| .++|+|.|.||+.--
T Consensus 19 kGd~Vsf~Ld~~~iP~~~IeKIE~lL~e~~ 48 (52)
T 3kz5_E 19 KGDKMVLNLDRSRVPTECIEKIEAILKELE 48 (52)
T ss_dssp ETTEEEEEEETTTSCHHHHHHHHHHHHHHC
T ss_pred cCCeEEEEeccccCCHHHHHHHHHHHHHHh
Confidence 34445689997776 579999999998643
No 2
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=29.25 E-value=79 Score=24.74 Aligned_cols=62 Identities=23% Similarity=0.414 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccccchh---hhhhhHHHHHHhhhhhhh-----hccCCChhhhHHHHHh-hHHHHhhccc
Q psy7536 37 IKKLLAALMKRYNYFPAA---SVLLKDAAQVLDKLKHEE-----AKFNVDSDKIDSLIKK-SEEILESKKI 98 (265)
Q Consensus 37 ikkllaalmkrynyfpaa---svllkdaaqvldklkhee-----akfnvdsdkidslikk-seeileskki 98 (265)
-|+.|..-.|.-|||-.+ +.+..|..-++++|-.|| .|.+-|.+.|.+.+.. ..++..+.++
T Consensus 29 nKRvIR~svKDanYFGda~~Aa~ID~DVdLIv~klddeeLa~lA~Kl~adA~avK~v~~e~ak~Lv~aGkL 99 (108)
T 2lwx_A 29 NKRAIRNSAKEADYFGDADKATTIDEQVGLIVDSLNDEELVSTADKIKANAAGAKEVLKESAKTIVDSGKL 99 (108)
T ss_dssp HHHHHHHHHHHTCCTTCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcccchhhhcccccHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCC
Confidence 467788889999999543 345567777778877765 3455566666665543 2334445444
No 3
>4gmq_A Putative ribosome associated protein; ribosome binding, CO-translational chaperone, ribosome-bindi protein; 1.30A {Chaetomium thermophilum var}
Probab=27.55 E-value=56 Score=25.30 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=24.1
Q ss_pred HHHHHHHHHhccccc----hhhhh---hhHHHHHHhhhhhhh
Q psy7536 38 KKLLAALMKRYNYFP----AASVL---LKDAAQVLDKLKHEE 72 (265)
Q Consensus 38 kkllaalmkrynyfp----aasvl---lkdaaqvldklkhee 72 (265)
|+.|....|..|||- .++++ |.|.--++++|..|+
T Consensus 18 KR~Ir~svKDanYF~~ga~~aa~ID~vL~dvdli~~kld~ee 59 (103)
T 4gmq_A 18 KRVLRGSVKEANYFVEGEASAATIDAVLNDVDLVITKIDADE 59 (103)
T ss_dssp HHHHHHHHHHTGGGSSSSCCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhcccccccccCCCCCCHHHHHHHHhhHHHHHHhcCHHH
Confidence 567888899999993 33333 346666777776665
No 4
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.61 E-value=62 Score=24.77 Aligned_cols=43 Identities=37% Similarity=0.613 Sum_probs=30.7
Q ss_pred HHHHHHHhc--------cccchhhhhhhHH------HHHHhhhhhhhhccCCChhhhHHHHH
Q psy7536 40 LLAALMKRY--------NYFPAASVLLKDA------AQVLDKLKHEEAKFNVDSDKIDSLIK 87 (265)
Q Consensus 40 llaalmkry--------nyfpaasvllkda------aqvldklkheeakfnvdsdkidslik 87 (265)
|+|.+++|| ||-|+.|+-.|-. ..||.|| .|.++.+.|+.++.
T Consensus 45 lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl-----~~~l~~~~i~~i~~ 101 (127)
T 2ee7_A 45 LVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRL-----NFSVPDDVMRKIAQ 101 (127)
T ss_dssp HHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGG-----TCCCCHHHHHHHHT
T ss_pred HHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHc-----CCCCCHHHHHHHHh
Confidence 789999987 4777777766642 2355555 47888888888875
No 5
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=25.15 E-value=39 Score=28.21 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=18.1
Q ss_pred HHHhhhhcccchhhhhhchHHHhhhhcchHH
Q psy7536 139 AETKKQVDSQGETKKQVDSQAESKKQVDAET 169 (265)
Q Consensus 139 aetkkqvdsqgetkkqvdsqaeskkqvdaet 169 (265)
+|.|||||++|+..-.--...+..-+|+-++
T Consensus 11 ~eikkq~d~~~~~s~~e~kkiek~~~v~yee 41 (170)
T 3fdq_A 11 QEIKKQVDNPGNSSTTEIKKMASEAGIDEQT 41 (170)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhccCCCcchHHHHHHHHHHhCCCHHH
Confidence 5788999999876433222333444555444
No 6
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.58 E-value=2.5e+02 Score=21.86 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhhhcchHHHHHHHHHHHHHHHhhhhHHH
Q psy7536 103 AAIESETETNKQVDNQAETKKQLESEIETKKQLESEAE 140 (265)
Q Consensus 103 aaiesetetnkqvdnqaetkkqleseietkkqleseae 140 (265)
.+..-..+-+..+..-++--+.|+.|++..++|..-.+
T Consensus 69 ~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 69 AAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555556667778888888888765444
No 7
>3hma_A N-acetylmuramoyl-L-alanine amidase XLYA; endolysin, cell WALL biogenesis/degradation, compet hydrolase, secreted, sporulation; 2.20A {Bacillus subtilis} PDB: 3rdr_A 3hmb_A
Probab=21.51 E-value=45 Score=25.20 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhccccchhhh
Q psy7536 36 GIKKLLAALMKRYNYFPAASV 56 (265)
Q Consensus 36 gikkllaalmkrynyfpaasv 56 (265)
-...|++.||+||+ .|...|
T Consensus 111 a~~~L~~~l~~~y~-i~~~~V 130 (157)
T 3hma_A 111 NAQWLIKTLMAEHN-ISLANV 130 (157)
T ss_dssp HHHHHHHHHHHHTT-CCGGGE
T ss_pred HHHHHHHHHHHHcC-CCHHHE
Confidence 35789999999998 455443
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.80 E-value=1.5e+02 Score=24.85 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHhhchHHHHHHHHHHhHHHH
Q psy7536 226 QAEMEKQFDSQAEAKKHLAQRYDDF 250 (265)
Q Consensus 226 qaemekqfdsqaeakkhlaqryddf 250 (265)
..+||++++.+.+....+.|.-.+-
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3466666666666655555444433
No 9
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=20.36 E-value=72 Score=20.81 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=16.9
Q ss_pred CCCCCCCCCCccchhchhhHHHHHHHHHHh
Q psy7536 18 GSKSPSGSGSSLSHLKTSGIKKLLAALMKR 47 (265)
Q Consensus 18 gskspsgsgsslshlktsgikkllaalmkr 47 (265)
++.+|+++|++..++....+..+|+..-.+
T Consensus 3 ~~~~~~~~~~~~~~~t~~~f~~~l~~~~~k 32 (116)
T 3qfa_C 3 GSHHHHHHGSVKQIESKTAFQEALDAAGDK 32 (116)
T ss_dssp ---------CCBCCCCHHHHHHHHHHHTTS
T ss_pred CccccccCCcccCCCCHHHHHHHHHhcCCC
Confidence 567899999999999999998888765444
No 10
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=19.32 E-value=44 Score=28.54 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHhccccchhhhhhhHHHHHHhhhhhhhhcc
Q psy7536 34 TSGIKKLLAALMKRYNYFPAASVLLKDAAQVLDKLKHEEAKF 75 (265)
Q Consensus 34 tsgikkllaalmkrynyfpaasvllkdaaqvldklkheeakf 75 (265)
.|-||+||.|+-..+.+.|.. ..+.|+..|.|-.+|
T Consensus 128 AsaIKklLDAvn~v~~~~~~~------~k~~le~~KreFVky 163 (213)
T 3ajm_A 128 ASAIKELLDTVNNVFKKYQYQ------NRRALEHQKKEFVKY 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchh------HHHHHHHHHHHHHHH
Confidence 478999999999998888865 567788888776554
Done!