Query psy7536
Match_columns 265
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 20:52:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7536.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7536hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fmpa1 a.60.6.1 (A:10-91) DNA 28.0 24 0.0017 22.8 3.2 60 39-99 11-74 (82)
2 d1ijwc_ a.4.1.2 (C:) HIN recom 25.8 5 0.00036 24.9 -0.7 10 47-56 38-47 (47)
3 d1s35a2 a.7.1.1 (A:1169-1273) 22.9 57 0.0041 19.8 4.2 26 74-99 4-29 (105)
4 d1ueka2 d.58.26.5 (A:149-268) 22.3 14 0.00099 24.3 1.0 38 14-51 72-113 (120)
5 d1h72c2 d.58.26.1 (C:168-300) 20.6 22 0.0016 24.7 1.9 28 21-48 90-117 (133)
6 d1rkba_ c.37.1.1 (A:) Adenylat 18.7 24 0.0018 21.9 1.6 21 21-51 11-31 (173)
7 d2bgxa2 d.118.1.1 (A:7-179) Pr 15.3 33 0.0024 24.8 1.9 19 36-55 123-141 (173)
8 d1xgsa1 a.4.5.25 (A:195-271) M 14.2 42 0.003 21.5 2.0 29 32-60 20-48 (77)
9 d1oj4a2 d.58.26.5 (A:164-283) 13.6 22 0.0016 23.9 0.4 21 14-34 66-86 (120)
10 d1jmsa1 a.60.6.1 (A:148-242) T 13.5 1.1E+02 0.0079 19.9 4.1 43 56-99 42-88 (95)
No 1
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.04 E-value=24 Score=22.83 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHHHHhccccchhhhhhhHHHHHHhhhhhhhhccCCChhhh----HHHHHhhHHHHhhcccC
Q psy7536 39 KLLAALMKRYNYFPAASVLLKDAAQVLDKLKHEEAKFNVDSDKI----DSLIKKSEEILESKKIE 99 (265)
Q Consensus 39 kllaalmkrynyfpaasvllkdaaqvldklkheeakfnvdsdki----dslikkseeileskkie 99 (265)
.-||.|+++-+-=|--+--...|+.+|..|.++-...+ +-.+| +++..+..||++..+++
T Consensus 11 ~ela~l~~~~~~~~fr~~AY~~Aa~~i~~l~~~i~~~~-~l~~i~GIGk~ia~kI~E~~~TG~~~ 74 (82)
T d2fmpa1 11 TELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGA-EAKKLPGVGTKIAEKIDEFLATGKLR 74 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHH-HHHTSTTCCHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHHHHhCCcccCCHH-HHhcCCCccHHHHHHHHHHHHhCChH
Confidence 44677777655444444557789999998876422110 11222 56778888888877653
No 2
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=25.78 E-value=5 Score=24.88 Aligned_cols=10 Identities=60% Similarity=1.235 Sum_probs=7.6
Q ss_pred hccccchhhh
Q psy7536 47 RYNYFPAASV 56 (265)
Q Consensus 47 rynyfpaasv 56 (265)
-|+||||.++
T Consensus 38 iYry~pa~~i 47 (47)
T d1ijwc_ 38 LYRYFPASSI 47 (47)
T ss_dssp HHHHSCSTTC
T ss_pred HHhhCCcccC
Confidence 4889998763
No 3
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.94 E-value=57 Score=19.77 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=20.9
Q ss_pred ccCCChhhhHHHHHhhHHHHhhcccC
Q psy7536 74 KFNVDSDKIDSLIKKSEEILESKKIE 99 (265)
Q Consensus 74 kfnvdsdkidslikkseeileskkie 99 (265)
.|+.|.+.|.+.|..-+.+|.+..+.
T Consensus 4 ~F~~d~~~~~~Wi~~~e~~l~~~~~g 29 (105)
T d1s35a2 4 EFQKDAKQAEAILSNQEYTLAHLEPP 29 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 47888899999999988888876543
No 4
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=22.31 E-value=14 Score=24.29 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=22.0
Q ss_pred hhhcCC--CCCCCCCCccchhchh--hHHHHHHHHHHhcccc
Q psy7536 14 LKDAGS--KSPSGSGSSLSHLKTS--GIKKLLAALMKRYNYF 51 (265)
Q Consensus 14 lkdags--kspsgsgsslshlkts--gikkllaalmkrynyf 51 (265)
|...|. -.-|||||++--|-.+ ..+++...|-++|.+|
T Consensus 72 l~~~g~~~~~mSGSGst~F~l~~~~~~a~~~~~~l~~~~~~~ 113 (120)
T d1ueka2 72 MRALGLRGVLMSGSGSAFFGLAEGPDHARRAAEALRAWGRAW 113 (120)
T ss_dssp HHHTTCEEEEECTTSSCEEEECSSHHHHHHHHHHHTTTSEEE
T ss_pred HHHhhhhheeecCCCCeEEEEeCCHHHHHHHHHHHHHhCCeE
Confidence 445664 3479999998776543 3344444444444443
No 5
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.64 E-value=22 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=18.5
Q ss_pred CCCCCCCccchhchhhHHHHHHHHHHhc
Q psy7536 21 SPSGSGSSLSHLKTSGIKKLLAALMKRY 48 (265)
Q Consensus 21 spsgsgsslshlktsgikkllaalmkry 48 (265)
.-||||+++--|-....-.-++..|+++
T Consensus 90 ~lSGSGPTv~al~~~~~~~~~~~~l~~~ 117 (133)
T d1h72c2 90 TISGSGPSIIAFPKEEFIDEVENILRDY 117 (133)
T ss_dssp EECTTSSCEEEEECGGGHHHHHHHHHHH
T ss_pred EEeCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 4599999988776555444455556554
No 6
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=18.70 E-value=24 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=12.8
Q ss_pred CCCCCCCccchhchhhHHHHHHHHHHhcccc
Q psy7536 21 SPSGSGSSLSHLKTSGIKKLLAALMKRYNYF 51 (265)
Q Consensus 21 spsgsgsslshlktsgikkllaalmkrynyf 51 (265)
.|+|||-| -+..+|.++|+|.
T Consensus 11 G~pGsGKT----------Tia~~La~~l~~~ 31 (173)
T d1rkba_ 11 GTPGVGKT----------TLGKELASKSGLK 31 (173)
T ss_dssp CSTTSSHH----------HHHHHHHHHHCCE
T ss_pred CCCCCCHH----------HHHHHHHHHHCCc
Confidence 57788733 2344566888764
No 7
>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.27 E-value=33 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhccccchhh
Q psy7536 36 GIKKLLAALMKRYNYFPAAS 55 (265)
Q Consensus 36 gikkllaalmkrynyfpaas 55 (265)
-+..|++.||+||+. |...
T Consensus 123 ~l~~L~~~l~~~y~I-~~~~ 141 (173)
T d2bgxa2 123 ALIPLAKDIIARYHI-KPEN 141 (173)
T ss_dssp HHHHHHHHHHHHHTC-CGGG
T ss_pred HHHHHHHHHHHHcCC-ChHH
Confidence 467899999999984 5443
No 8
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=14.19 E-value=42 Score=21.53 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.3
Q ss_pred hchhhHHHHHHHHHHhccccchhhhhhhH
Q psy7536 32 LKTSGIKKLLAALMKRYNYFPAASVLLKD 60 (265)
Q Consensus 32 lktsgikkllaalmkrynyfpaasvllkd 60 (265)
|+.-.-+++|..+.++|+.||-+.-.|.|
T Consensus 20 lr~~~ar~ll~~I~~~f~tLPFs~RwL~~ 48 (77)
T d1xgsa1 20 VRVAQARFLLAKIKREYGTLPFAYRWLQN 48 (77)
T ss_dssp CSSHHHHHHHHHHHHHTTTSCEESGGGTT
T ss_pred CCCHHHHHHHHHHHHHCCCcceeHHHHhh
Confidence 44445689999999999999998776654
No 9
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=13.60 E-value=22 Score=23.86 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=15.5
Q ss_pred hhhcCCCCCCCCCCccchhch
Q psy7536 14 LKDAGSKSPSGSGSSLSHLKT 34 (265)
Q Consensus 14 lkdagskspsgsgsslshlkt 34 (265)
|...|.-.-|||||++=-+-.
T Consensus 66 L~~~g~~~MSGSGstvF~~f~ 86 (120)
T d1oj4a2 66 LLEYAPSRLTGTGACVFAEFD 86 (120)
T ss_dssp HTTTSCEEECTTSSCEEEEES
T ss_pred HhhcccceecCCCCEEEEEeC
Confidence 566787778999999755433
No 10
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.45 E-value=1.1e+02 Score=19.94 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=27.1
Q ss_pred hhhhHHHHHHhhhhhhhhccCCChhhh----HHHHHhhHHHHhhcccC
Q psy7536 56 VLLKDAAQVLDKLKHEEAKFNVDSDKI----DSLIKKSEEILESKKIE 99 (265)
Q Consensus 56 vllkdaaqvldklkheeakfnvdsdki----dslikkseeileskkie 99 (265)
--..-|+.+|..|..+-... -+-..| +++..+..|||+..+++
T Consensus 42 ~AY~rAa~~i~~l~~~i~~~-~~l~~i~GIGk~i~~kI~Eil~tG~~~ 88 (95)
T d1jmsa1 42 LAFMRASSVLKSLPFPITSM-KDTEGIPCLGDKVKSIIEGIIEDGESS 88 (95)
T ss_dssp HHHHHHHHHHHTCSSCCCSG-GGGTTCSSCCHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHhCCcccCCH-HHHHhccchhHHHHHHHHHHHHHCCcH
Confidence 34567888888887543211 112222 46788889999888764
Done!