Query psy7537
Match_columns 224
No_of_seqs 4 out of 6
Neff 1.4
Searched_HMMs 29240
Date Fri Aug 16 20:54:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 93.0 1.7 5.8E-05 35.0 11.6 36 121-158 92-127 (256)
2 3ol1_A Vimentin; structural ge 91.1 0.88 3E-05 34.0 7.3 80 120-201 21-101 (119)
3 2no2_A HIP-I, huntingtin-inter 87.8 1.8 6.1E-05 32.4 6.8 92 89-198 6-97 (107)
4 3swk_A Vimentin; cytoskeleton, 85.7 2.6 8.8E-05 30.2 6.5 81 120-202 1-82 (86)
5 3na7_A HP0958; flagellar bioge 77.5 26 0.00088 28.1 10.7 11 187-197 176-186 (256)
6 3oja_B Anopheles plasmodium-re 74.3 39 0.0013 28.6 12.1 11 190-200 572-582 (597)
7 3ol1_A Vimentin; structural ge 72.8 5.8 0.0002 29.5 5.0 86 62-158 21-106 (119)
8 2no2_A HIP-I, huntingtin-inter 71.8 10 0.00035 28.2 6.1 58 117-178 6-63 (107)
9 2dfs_A Myosin-5A; myosin-V, in 67.1 34 0.0012 33.5 10.1 24 109-132 981-1004(1080)
10 2dfs_A Myosin-5A; myosin-V, in 63.3 19 0.00066 35.2 7.6 20 142-161 984-1003(1080)
11 3swk_A Vimentin; cytoskeleton, 59.7 9.8 0.00033 27.2 3.8 32 122-155 52-83 (86)
12 3vkg_A Dynein heavy chain, cyt 57.1 85 0.0029 34.7 11.8 38 142-179 2035-2073(3245)
13 3oja_B Anopheles plasmodium-re 51.7 73 0.0025 26.9 8.4 12 193-204 579-590 (597)
14 2fxo_A Myosin heavy chain, car 48.0 56 0.0019 24.1 6.4 19 162-180 104-122 (129)
15 3vkg_A Dynein heavy chain, cyt 46.8 1E+02 0.0035 34.1 10.5 48 142-189 2014-2062(3245)
16 3s4r_A Vimentin; alpha-helix, 42.2 27 0.00092 25.2 3.8 37 119-157 56-92 (93)
17 2pih_A Protein YMCA; regulate 40.8 67 0.0023 24.3 6.0 73 104-180 32-104 (151)
18 2oeq_A Protein of unknown func 39.7 66 0.0023 23.1 5.6 71 105-180 32-102 (122)
19 3sja_C Golgi to ER traffic pro 37.8 34 0.0012 24.3 3.6 50 122-181 9-58 (65)
20 3kqg_A Langerin, C-type lectin 36.6 76 0.0026 22.6 5.4 61 147-218 4-64 (182)
21 2kw0_A CCMH protein; oxidoredu 36.3 26 0.00087 26.0 2.9 39 159-197 36-75 (90)
22 3kz5_E Protein SOPB; partition 36.2 12 0.00041 26.1 1.0 31 15-45 20-51 (52)
23 3ghg_A Fibrinogen alpha chain; 35.9 79 0.0027 30.2 6.8 69 61-134 64-132 (562)
24 2fxo_A Myosin heavy chain, car 34.4 1.4E+02 0.0047 22.0 7.6 19 142-160 104-122 (129)
25 4dzn_A Coiled-coil peptide CC- 32.6 44 0.0015 21.4 3.1 8 149-156 9-16 (33)
26 2lf0_A Uncharacterized protein 31.8 55 0.0019 26.0 4.3 47 110-160 8-54 (123)
27 2hl7_A Cytochrome C-type bioge 31.3 39 0.0013 24.4 3.2 38 159-196 39-77 (84)
28 2pih_A Protein YMCA; regulate 28.8 50 0.0017 25.0 3.5 74 76-151 32-105 (151)
29 3lay_A Zinc resistance-associa 28.6 56 0.0019 26.1 3.9 17 162-178 113-129 (175)
30 4emc_A Monopolin complex subun 27.1 68 0.0023 26.8 4.3 37 109-161 17-53 (190)
31 2lf0_A Uncharacterized protein 24.5 55 0.0019 26.0 3.1 40 141-180 9-54 (123)
32 3ghg_A Fibrinogen alpha chain; 23.9 1.4E+02 0.0048 28.5 6.2 64 94-162 67-130 (562)
33 3mq7_A Bone marrow stromal ant 23.6 1.1E+02 0.0039 24.1 4.8 35 141-175 70-105 (121)
34 2cly_A ATP synthase B chain, m 22.7 1.5E+02 0.0052 24.4 5.6 12 162-173 149-160 (214)
35 2j5u_A MREC protein; bacterial 22.5 36 0.0012 27.7 1.8 11 169-179 50-60 (255)
36 4fi5_A Nucleoprotein; structur 22.2 76 0.0026 24.8 3.4 81 101-187 13-94 (113)
37 2k48_A Nucleoprotein; viral pr 22.0 1.3E+02 0.0046 23.2 4.8 65 112-180 35-100 (107)
38 3pk1_B Apoptosis regulator BAX 21.3 53 0.0018 21.2 2.0 24 144-167 9-32 (34)
39 2riq_A Poly [ADP-ribose] polym 21.1 68 0.0023 25.6 3.1 88 118-216 2-96 (160)
40 2oeq_A Protein of unknown func 21.0 57 0.0019 23.5 2.4 73 76-151 31-103 (122)
41 2cly_A ATP synthase B chain, m 20.3 3.6E+02 0.012 22.1 8.0 17 145-161 142-158 (214)
42 2iaz_A Hypothetical protein SP 20.2 1.4E+02 0.0046 20.7 4.2 67 107-178 31-97 (113)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.00 E-value=1.7 Score=35.02 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=14.3
Q ss_pred HHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhh
Q psy7537 121 QAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQF 158 (224)
Q Consensus 121 ~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQl 158 (224)
..+|.+++++...-..... .++..+...+.+++..+
T Consensus 92 ~~aL~kEie~~~~~i~~lE--~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQAN--REIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3344444443333333333 34444444444444433
No 2
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.06 E-value=0.88 Score=33.99 Aligned_cols=80 Identities=11% Similarity=0.289 Sum_probs=43.4
Q ss_pred hHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHH-HhhhhchHHHHHHhhchHHHHHHHHHHhHHHHHhh
Q psy7537 120 SQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAE-TKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKE 198 (224)
Q Consensus 120 e~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe-~KrlsDe~AalKKQlDSnAqsKkhlaqryddfmke 198 (224)
+++.|++|||.....+.... .|+..+-+....+|..+..-.- -...-.++..|||.+|.-.-+|-.|-.+......|
T Consensus 21 ~I~~LR~qid~~~~e~a~l~--leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVE--VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 35556666666555555554 5555555555555554443211 11122345667777776666666666666655555
Q ss_pred hcc
Q psy7537 199 LDY 201 (224)
Q Consensus 199 ldy 201 (224)
|.|
T Consensus 99 l~F 101 (119)
T 3ol1_A 99 IAF 101 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 3
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=87.81 E-value=1.8 Score=32.41 Aligned_cols=92 Identities=18% Similarity=0.308 Sum_probs=60.0
Q ss_pred hhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhh
Q psy7537 89 QVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQL 168 (224)
Q Consensus 89 l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~Krls 168 (224)
|...||++-|||.+-.++...+..+.+.|.++...++.+ ++..++.....+..++++|....
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~------------~~~k~~eq~~~le~lk~eL~~~~------ 67 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQ------------GQRKTQEQLEVLESLKQELATSQ------ 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH------
Confidence 556688999999999999999999999999998888722 22444555556666666655432
Q ss_pred chHHHHHHhhchHHHHHHHHHHhHHHHHhh
Q psy7537 169 DSQAEMKKQFDSQAEAKKHLAQRYDDFMKE 198 (224)
Q Consensus 169 De~AalKKQlDSnAqsKkhlaqryddfmke 198 (224)
+++..++..++.-.+++..|..+.+..-+|
T Consensus 68 ~el~~lq~~l~~~~~~~~~l~~~~~~l~~E 97 (107)
T 2no2_A 68 RELQVLQGSLETSAQSEANWAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233335555555555555555555444443
No 4
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.69 E-value=2.6 Score=30.24 Aligned_cols=81 Identities=11% Similarity=0.277 Sum_probs=57.6
Q ss_pred hHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHH-hhhhchHHHHHHhhchHHHHHHHHHHhHHHHHhh
Q psy7537 120 SQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAET-KKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKE 198 (224)
Q Consensus 120 e~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~-KrlsDe~AalKKQlDSnAqsKkhlaqryddfmke 198 (224)
|+..|++|++.-..-++... .|+..+-+....+|..+..-... ...-.++..|||-+|.-.-+|-.|-.+.+....|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~--~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVE--VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788887777777666 66777777777777766543221 1122457789999999889999999888888888
Q ss_pred hccc
Q psy7537 199 LDYK 202 (224)
Q Consensus 199 ldyk 202 (224)
|.|-
T Consensus 79 l~fL 82 (86)
T 3swk_A 79 IAFL 82 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.54 E-value=26 Score=28.07 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=6.1
Q ss_pred HHHHhHHHHHh
Q psy7537 187 HLAQRYDDFMK 197 (224)
Q Consensus 187 hlaqryddfmk 197 (224)
.|-.+|+...+
T Consensus 176 ~lL~~Yerir~ 186 (256)
T 3na7_A 176 KIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34556765554
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.31 E-value=39 Score=28.57 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=4.8
Q ss_pred HhHHHHHhhhc
Q psy7537 190 QRYDDFMKELD 200 (224)
Q Consensus 190 qryddfmkeld 200 (224)
+.....+.+++
T Consensus 572 ~~~~~l~~~~~ 582 (597)
T 3oja_B 572 QKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 33444444444
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.83 E-value=5.8 Score=29.48 Aligned_cols=86 Identities=10% Similarity=0.214 Sum_probs=40.7
Q ss_pred hHHHHHHHhhHHHHhhhhhchHHHHhhhhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcH
Q psy7537 62 NQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQ 141 (224)
Q Consensus 62 ~~a~~kkQL~s~ies~~ql~adAe~K~l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsq 141 (224)
.+..+..||+.....+..|. .++..+-+.-..++........-|.++. .++..|||.+|.-.-++....
T Consensus 21 ~I~~LR~qid~~~~e~a~l~--leldn~~~~~edfk~KyE~E~~~r~~~E-------~di~~lrK~lD~~~l~r~dLE-- 89 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVE--VERDNLAEDIMRLREKLQEEMLQREEAE-------NTLQSFRQDVDNASLARLDLE-- 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHhhhcccHHHHHHHHHH--
Confidence 35556666665555555333 2223322222233332222222222222 245567777776555554443
Q ss_pred HHHhhhhchHHHHHHhh
Q psy7537 142 AETKKQFDSQAETKKQF 158 (224)
Q Consensus 142 AE~KrlsDe~AalKkQl 158 (224)
+.+.-|.+|+.-||+-.
T Consensus 90 ~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 90 RKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666666544
No 8
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.76 E-value=10 Score=28.24 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=38.7
Q ss_pred hcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhh
Q psy7537 117 QVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQF 178 (224)
Q Consensus 117 lsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQl 178 (224)
|-..+|++-|||..--++..... .+.+.|.+++..++ ..++..++.+...+..|+.+|
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e--~~k~eL~~~~~~~~--~~~~~k~~eq~~~le~lk~eL 63 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLE--REKKELEDSLERIS--DQGQRKTQEQLEVLESLKQEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44568889999988777776666 77777888888777 344445555555555554443
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.15 E-value=34 Score=33.49 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=15.9
Q ss_pred hchhhhhhhcchHHHHHHhhhhhh
Q psy7537 109 QVDAETKKQVDSQAETKKQLDSQA 132 (224)
Q Consensus 109 saDAE~KrlsDe~AalKkQLDSnA 132 (224)
.+.++++.|-.+++.+.+++....
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777666544
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.32 E-value=19 Score=35.18 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=12.6
Q ss_pred HHHhhhhchHHHHHHhhccH
Q psy7537 142 AETKKQFDSQAETKKQFDSQ 161 (224)
Q Consensus 142 AE~KrlsDe~AalKkQlDSn 161 (224)
++++.|-++++.+.+++...
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666553
No 11
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.72 E-value=9.8 Score=27.18 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHH
Q psy7537 122 AETKKQLDSQAETKKQFDSQAETKKQFDSQAETK 155 (224)
Q Consensus 122 AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalK 155 (224)
..|||-+|.-.-+|.... +.+.-|.+|++-||
T Consensus 52 ~~LrkdvD~a~l~r~dLE--~kvesL~eEl~fLk 83 (86)
T 3swk_A 52 QSFRQDVDNASLARLDLE--RKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHTTHHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 344555554444333222 33344444444444
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.11 E-value=85 Score=34.73 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=18.8
Q ss_pred HHHhhhhchHHHHHHhhccH-HHHhhhhchHHHHHHhhc
Q psy7537 142 AETKKQFDSQAETKKQFDSQ-AETKKQLDSQAEMKKQFD 179 (224)
Q Consensus 142 AE~KrlsDe~AalKkQlDSn-Ae~KrlsDe~AalKKQlD 179 (224)
++++.+-+++++|+.+++.. +|..++.++....++.|+
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555543 444444444444444443
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.72 E-value=73 Score=26.91 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=1.5
Q ss_pred HHHHhhhccccc
Q psy7537 193 DDFMKELDYKET 204 (224)
Q Consensus 193 ddfmkeldyket 204 (224)
..+-+-.|-...
T Consensus 579 ~~~~~~~~~~~~ 590 (597)
T 3oja_B 579 AKKNRNPDTRRV 590 (597)
T ss_dssp HTTC--------
T ss_pred HHhcCCCccccc
Confidence 333344443333
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.96 E-value=56 Score=24.13 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=11.3
Q ss_pred HHHhhhhchHHHHHHhhch
Q psy7537 162 AETKKQLDSQAEMKKQFDS 180 (224)
Q Consensus 162 Ae~KrlsDe~AalKKQlDS 180 (224)
++-+++-+++..|+++++.
T Consensus 104 ~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 104 AKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666653
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.81 E-value=1e+02 Score=34.13 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHhhhhchHHHHHHhhcc-HHHHhhhhchHHHHHHhhchHHHHHHHHH
Q psy7537 142 AETKKQFDSQAETKKQFDS-QAETKKQLDSQAEMKKQFDSQAEAKKHLA 189 (224)
Q Consensus 142 AE~KrlsDe~AalKkQlDS-nAe~KrlsDe~AalKKQlDSnAqsKkhla 189 (224)
+++..+-.+.++.+.+|.. +++.+.+-+++++|+.+++..-.-|..|.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555543 36677777788888888876544444443
No 16
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.20 E-value=27 Score=25.17 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=24.0
Q ss_pred chHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHh
Q psy7537 119 DSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQ 157 (224)
Q Consensus 119 De~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQ 157 (224)
.++..|++|+|.-...+.... .|+..+.+++..+|..
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~--~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVE--VERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence 456677777777766666665 6666666666666554
No 17
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=40.79 E-value=67 Score=24.30 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=50.1
Q ss_pred hhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhch
Q psy7537 104 AESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDS 180 (224)
Q Consensus 104 aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDS 180 (224)
|..+-.+|.|.+++.++...+++++..-...... ..++..-.++.+++++++.|..+........+|-.-|+.
T Consensus 32 A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~----~~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~~ 104 (151)
T 2pih_A 32 AEAQINENDKVSTIVNQIKALQKQAVNLKHYEKH----EALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQL 104 (151)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCc----cchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 3334456888888999888888887654432211 124455567788899999998888888777777666553
No 18
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=39.69 E-value=66 Score=23.14 Aligned_cols=71 Identities=4% Similarity=0.071 Sum_probs=50.5
Q ss_pred hhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhch
Q psy7537 105 ESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDS 180 (224)
Q Consensus 105 qSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDS 180 (224)
..+-.+|.|.+++.++...++.++......-..++ .| .-.++.+++++++.|..+........+|-.-|+.
T Consensus 32 ~~~l~~D~ea~~li~~F~~~q~~~q~~q~~G~~~~--~e---~~~~l~~l~~~l~~n~~v~~~~~Ae~~l~~ll~~ 102 (122)
T 2oeq_A 32 YEDVRRDETAYRMFANVRDIQLRLHEKQMRGAAIL--PD---EIEQAQKAMALAQQNEKLARLMALEQQMSITIAE 102 (122)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHHHHHTTCCCC--HH---HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 33445688999999999999988876544333344 22 3345678899999998888888877777666654
No 19
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=37.85 E-value=34 Score=24.31 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=27.3
Q ss_pred HHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhchH
Q psy7537 122 AETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQ 181 (224)
Q Consensus 122 AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDSn 181 (224)
..|++++-.--.-.++..+|.|. ---|-|.+++| +++.++..++++++|.
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeF----AKWaKL~Rk~D------Kl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNY----AKWTKNNRKLD------SLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTH----HHHHHHHHHHH------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHH------HHHHHHHHHHHHhhcc
Confidence 33333333333333344444443 33456667666 5777888888887763
No 20
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=36.56 E-value=76 Score=22.60 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=26.5
Q ss_pred hhchHHHHHHhhccHHHHhhhhchHHHHHHhhchHHHHHHHHHHhHHHHHhhhcccccCccceecceeeeEe
Q psy7537 147 QFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKETSGTTIHHGIRYRVQ 218 (224)
Q Consensus 147 lsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDSnAqsKkhlaqryddfmkeldyketsgttihhgiryrvq 218 (224)
|+.++.+||+.++ .+..|...+..|+.+|+.-.++ |.+ +.....- =..|-+.+.|.-|++.
T Consensus 4 l~~~~~~l~~~~~---~~~~l~~~~~~l~~~l~~~~~~---l~~-~~~~~~~----Cp~gw~~~~~~CY~~~ 64 (182)
T 3kqg_A 4 LNAQIPELKSDLE---KASALNTKIRALQGSLENMSKL---LKR-QNDILQV----VSQGWKYFKGNFYYFS 64 (182)
T ss_dssp ---------CHHH---HHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHH----HTTTCEEETTEEEEEC
T ss_pred hhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHhcc----CCCCCEEeCCEEEEEE
Confidence 3445555555554 3455555666666666544332 211 1121111 2357777788888763
No 21
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=36.35 E-value=26 Score=25.97 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=31.7
Q ss_pred ccHHHH-hhhhchHHHHHHhhchHHHHHHHHHHhHHHHHh
Q psy7537 159 DSQAET-KKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMK 197 (224)
Q Consensus 159 DSnAe~-KrlsDe~AalKKQlDSnAqsKkhlaqryddfmk 197 (224)
||||.+ +.+-.++.+|-++=+|..|-...|..||-+|.-
T Consensus 36 dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdfVl 75 (90)
T 2kw0_A 36 DSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVT 75 (90)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCB
T ss_pred hcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEE
Confidence 566544 345667888889999999999999999999963
No 22
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=36.24 E-value=12 Score=26.13 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=21.2
Q ss_pred hhhhcccCChhhh-HHHHHhhHHHHhhhccCC
Q psy7537 15 HEEAKFNVDSDKI-DSLIKKSEEILESKKIES 45 (224)
Q Consensus 15 heeakfnvdsdki-dslikkseeileskkies 45 (224)
-.-.-||+|+.+| .++|+|.|.||+.---+.
T Consensus 20 Gd~Vsf~Ld~~~iP~~~IeKIE~lL~e~~k~~ 51 (52)
T 3kz5_E 20 GDKMVLNLDRSRVPTECIEKIEAILKELEKPA 51 (52)
T ss_dssp TTEEEEEEETTTSCHHHHHHHHHHHHHHC---
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHHHHhhcC
Confidence 3345689987776 579999999998654333
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.94 E-value=79 Score=30.19 Aligned_cols=69 Identities=10% Similarity=0.125 Sum_probs=39.5
Q ss_pred hhHHHHHHHhhHHHHhhhhhchHHHHhhhhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhh
Q psy7537 61 DNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAET 134 (224)
Q Consensus 61 d~~a~~kkQL~s~ies~~ql~adAe~K~l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqs 134 (224)
..+.+|+.+|+..-++++ +++.-++-+++.-..--+|..-+-....++-.|+.| .+..||..+|+|.+.
T Consensus 64 krINELKnqLEdlsKnsK--dseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRR---rIqyLKekVdnQlsn 132 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNK--DSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRS---RIEVLKRKVIEKVQH 132 (562)
T ss_dssp HHHHHHHHHHTHHHHHHH--HHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhch--hHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 457788889988866666 666666766665432222222233334444434433 456677777776633
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.37 E-value=1.4e+02 Score=21.98 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=13.4
Q ss_pred HHHhhhhchHHHHHHhhcc
Q psy7537 142 AETKKQFDSQAETKKQFDS 160 (224)
Q Consensus 142 AE~KrlsDe~AalKkQlDS 160 (224)
++-+++-+++..|+++++.
T Consensus 104 ~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 104 AKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777764
No 25
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.56 E-value=44 Score=21.42 Aligned_cols=8 Identities=38% Similarity=0.281 Sum_probs=3.6
Q ss_pred chHHHHHH
Q psy7537 149 DSQAETKK 156 (224)
Q Consensus 149 De~AalKk 156 (224)
.|||+|||
T Consensus 9 qeiaalkk 16 (33)
T 4dzn_A 9 QEIAALKK 16 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 26
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.82 E-value=55 Score=25.97 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=30.3
Q ss_pred chhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhcc
Q psy7537 110 VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDS 160 (224)
Q Consensus 110 aDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDS 160 (224)
.-+|.++|+|...++.++|+. |..++..+ =+..+-+|++.|-+++-+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaa-a~~rgd~~---~i~qf~~E~~~l~k~I~~ 54 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQAD-LSLVEAAD---KYAELEKEKATLEAEIAR 54 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCTTTCTT---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCCCHH---HHHHHHHHHHHHHHHHHH
Confidence 357899999999999999875 44444433 334445566655555443
No 27
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=31.27 E-value=39 Score=24.45 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=31.1
Q ss_pred ccHHHH-hhhhchHHHHHHhhchHHHHHHHHHHhHHHHH
Q psy7537 159 DSQAET-KKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFM 196 (224)
Q Consensus 159 DSnAe~-KrlsDe~AalKKQlDSnAqsKkhlaqryddfm 196 (224)
||||.+ +.+-.++.+|-++=+|..|-...|..||-+|.
T Consensus 39 dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG~fV 77 (84)
T 2hl7_A 39 DSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFV 77 (84)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTC
T ss_pred hcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCee
Confidence 666544 34566788888999999999999999999985
No 28
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=28.80 E-value=50 Score=25.03 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=40.7
Q ss_pred hhhhhchHHHHhhhhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchH
Q psy7537 76 TKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQ 151 (224)
Q Consensus 76 s~~ql~adAe~K~l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~ 151 (224)
++..+.+|.+.+.++..--.+++++..-....... .++....+..+++++|+.|.--..-...+.++-.+.+++
T Consensus 32 A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~--~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~~I 105 (151)
T 2pih_A 32 AEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHE--ALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLV 105 (151)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCcc--chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666555555443322221111 344555677788888888876666555444554544444
No 29
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.57 E-value=56 Score=26.05 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=8.3
Q ss_pred HHHhhhhchHHHHHHhh
Q psy7537 162 AETKKQLDSQAEMKKQF 178 (224)
Q Consensus 162 Ae~KrlsDe~AalKKQl 178 (224)
+.++.+.+++++|..++
T Consensus 113 akI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 113 AKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 30
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.06 E-value=68 Score=26.77 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=24.5
Q ss_pred hchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccH
Q psy7537 109 QVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQ 161 (224)
Q Consensus 109 saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSn 161 (224)
++|-.|-+|+-||..|..||++ ..+||.+|++|+.|.
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~----------------k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDT----------------KATEIKQLQKQIDSL 53 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH
Confidence 4677888888888888888872 234566666666665
No 31
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.49 E-value=55 Score=25.97 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=29.5
Q ss_pred HHHHhhhhchHHHHHHhhccH------HHHhhhhchHHHHHHhhch
Q psy7537 141 QAETKKQFDSQAETKKQFDSQ------AETKKQLDSQAEMKKQFDS 180 (224)
Q Consensus 141 qAE~KrlsDe~AalKkQlDSn------Ae~KrlsDe~AalKKQlDS 180 (224)
.+|+++|+|.+.++.++++.- .-+.+..+|++.|-+++.+
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~ 54 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIAR 54 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998764 3345566666666666543
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.87 E-value=1.4e+02 Score=28.51 Aligned_cols=64 Identities=8% Similarity=0.080 Sum_probs=34.1
Q ss_pred hhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHH
Q psy7537 94 GETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQA 162 (224)
Q Consensus 94 galkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnA 162 (224)
.+|+.+++...+++++++.=++-+.+....--+|-..|-....+.. .|+. ..|..||..+|+|.
T Consensus 67 NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S--~ELR---RrIqyLKekVdnQl 130 (562)
T 3ghg_A 67 NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS--EDLR---SRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT--HHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH--HHHH---HHHHHHHHHHHHHH
Confidence 3667777777666766666666666655433333333333333333 2332 34556666666654
No 33
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.61 E-value=1.1e+02 Score=24.10 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=18.8
Q ss_pred HHHHhhhhchHHHHHHhhcc-HHHHhhhhchHHHHH
Q psy7537 141 QAETKKQFDSQAETKKQFDS-QAETKKQLDSQAEMK 175 (224)
Q Consensus 141 qAE~KrlsDe~AalKkQlDS-nAe~KrlsDe~AalK 175 (224)
|+.++.|-+||..|+.+|.. -||+.||..++..+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 44566666666666655532 255555555554443
No 34
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=22.69 E-value=1.5e+02 Score=24.41 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=4.8
Q ss_pred HHHhhhhchHHH
Q psy7537 162 AETKKQLDSQAE 173 (224)
Q Consensus 162 Ae~KrlsDe~Aa 173 (224)
.|+|+.+|.+-+
T Consensus 149 ~EvK~rLDy~v~ 160 (214)
T 2cly_A 149 REVKNRLDYHIS 160 (214)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 35
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.45 E-value=36 Score=27.71 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.0
Q ss_pred chHHHHHHhhc
Q psy7537 169 DSQAEMKKQFD 179 (224)
Q Consensus 169 De~AalKKQlD 179 (224)
.|++.|++.|+
T Consensus 50 ~En~rLr~lL~ 60 (255)
T 2j5u_A 50 KENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 34444444444
No 36
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.24 E-value=76 Score=24.82 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=45.9
Q ss_pred chhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhcc-HHHHhhhhchHHHHHHhhc
Q psy7537 101 DSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDS-QAETKKQLDSQAEMKKQFD 179 (224)
Q Consensus 101 dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDS-nAe~KrlsDe~AalKKQlD 179 (224)
..++|..+|.+ +++|-+|+.+...||..--|--..|..+.|. =-|++. |.-|++ .+++.-+-+.+++||+||-
T Consensus 13 ~~~~~~~~~~~--ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~--DPDevN--K~tl~~R~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 13 EAQTQGPGSMT--MEELQREINAHEGQLVIARQKVRDAEKQYEK--DPDELN--KRTLTDREGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp --------CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556654 7889999999999998776655555544433 233332 222222 3777888888888888886
Q ss_pred hHHHHHHH
Q psy7537 180 SQAEAKKH 187 (224)
Q Consensus 180 SnAqsKkh 187 (224)
....+.+.
T Consensus 87 d~va~~k~ 94 (113)
T 4fi5_A 87 DRIATGKN 94 (113)
T ss_dssp HHHHC---
T ss_pred HHHHhccc
Confidence 65554443
No 37
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.00 E-value=1.3e+02 Score=23.25 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=41.5
Q ss_pred hhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhcc-HHHHhhhhchHHHHHHhhch
Q psy7537 112 AETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDS-QAETKKQLDSQAEMKKQFDS 180 (224)
Q Consensus 112 AE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDS-nAe~KrlsDe~AalKKQlDS 180 (224)
+.+++|-+|+.+...||..--|--..|..+.|. =-|++. |.-+++ .+++.-+-+.+++||+||--
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~--DPDevN--K~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEV--DPDDVN--KSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999998776666666544443 233332 222222 36777777888888887743
No 38
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=21.34 E-value=53 Score=21.25 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=12.6
Q ss_pred HhhhhchHHHHHHhhccHHHHhhh
Q psy7537 144 TKKQFDSQAETKKQFDSQAETKKQ 167 (224)
Q Consensus 144 ~KrlsDe~AalKkQlDSnAe~Krl 167 (224)
+|++..-.-..--.||+|+|..|+
T Consensus 9 ~K~l~~cL~~IgDEld~N~ELQrm 32 (34)
T 3pk1_B 9 TKKLSECLKRIGDELDSNMELQRM 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHh
Confidence 444544444444555666665554
No 39
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=21.08 E-value=68 Score=25.55 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=43.3
Q ss_pred cchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhchHHH----HHHHHHHhHH
Q psy7537 118 VDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAE----AKKHLAQRYD 193 (224)
Q Consensus 118 sDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDSnAq----sKkhlaqryd 193 (224)
+|+.|+-|...+-.-.. +.+.++|.|++++=+++..|..+ + ...+|+.-|.-|-| ++..|..|--
T Consensus 2 ~~~~~~kk~k~e~~~~~----~~~~~lk~Q~~~lw~~rD~L~~~--l-----s~~eLk~lL~~N~q~~~g~~~~ll~r~A 70 (160)
T 2riq_A 2 VDEVAKKKSKKEKDKDS----KLEKALKAQNDLIWNIKDELKKV--C-----STNDLKELLIFNKQQVPSGESAILDRVA 70 (160)
T ss_dssp ---------CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--C-----CHHHHHHHHHHTTCCCCSSHHHHHHHHH
T ss_pred cchhhhhhcccCccccH----HHHHHHHHHHHHHHHHHHHHHhh--C-----CHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 45555544444322222 23456888888888888887642 1 12334444444443 6778889988
Q ss_pred HHHhhhcc---cccCccceecceeee
Q psy7537 194 DFMKELDY---KETSGTTIHHGIRYR 216 (224)
Q Consensus 194 dfmkeldy---ketsgttihhgiryr 216 (224)
|-|--=-. ..-+|.-+-.|..|.
T Consensus 71 Dgm~FGal~~CP~C~G~l~y~~~~Y~ 96 (160)
T 2riq_A 71 DGMVFGALLPCEECSGQLVFKSDAYY 96 (160)
T ss_dssp HHHHHCEECCCTTTCCCEEEETTEEE
T ss_pred HHHHhCCCCCCCCCCCEEEEeCCeEE
Confidence 87742111 222355455565555
No 40
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=20.95 E-value=57 Score=23.51 Aligned_cols=73 Identities=0% Similarity=0.069 Sum_probs=38.5
Q ss_pred hhhhhchHHHHhhhhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchH
Q psy7537 76 TKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQ 151 (224)
Q Consensus 76 s~~ql~adAe~K~l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~ 151 (224)
++..+.+|.+.+++...--.++.++..-.......+.| ...+..+++++|+.|..-..-...+.++-.+.+++
T Consensus 31 A~~~l~~D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e---~~~~l~~l~~~l~~n~~v~~~~~Ae~~l~~ll~~I 103 (122)
T 2oeq_A 31 AYEDVRRDETAYRMFANVRDIQLRLHEKQMRGAAILPD---EIEQAQKAMALAQQNEKLARLMALEQQMSITIAEV 103 (122)
T ss_dssp HHHHHHTCTTHHHHHHHHHHHHHHHHHHHHTTCCCCHH---HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666655555555444333222234444 33455677778887766665555444444444443
No 41
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=20.28 E-value=3.6e+02 Score=22.14 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=7.7
Q ss_pred hhhhchHHHHHHhhccH
Q psy7537 145 KKQFDSQAETKKQFDSQ 161 (224)
Q Consensus 145 KrlsDe~AalKkQlDSn 161 (224)
+|+-.--++.|+.||+.
T Consensus 142 e~~~~v~~EvK~rLDy~ 158 (214)
T 2cly_A 142 ERLHRVYREVKNRLDYH 158 (214)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344445555554
No 42
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=20.15 E-value=1.4e+02 Score=20.75 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=38.6
Q ss_pred hhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhh
Q psy7537 107 KKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQF 178 (224)
Q Consensus 107 k~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQl 178 (224)
+-.+|.|.+++.++...++.++..-.. .|..-+.. ...++.++++.++.|..+........++-.-|
T Consensus 31 ~i~~d~ea~~l~~~f~~~q~~~~~~q~-~G~~~~~e----~~~~~~~l~~~i~~~p~v~~y~~Ae~~l~~ll 97 (113)
T 2iaz_A 31 AIAADAEASKIFTDYLAFQEEIQKLAQ-TGQMPDAS----FQAKMEGFGKQIQGNSLLSEFFTKQQQLAIYL 97 (113)
T ss_dssp HHHHCHHHHHHHHHHHHHGGGTTTTCC-----CCHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344577777888887777777764332 33222222 23455677778888877777666555544433
Done!