Query psy7537
Match_columns 224
No_of_seqs 4 out of 6
Neff 1.4
Searched_HMMs 13730
Date Fri Aug 16 20:54:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7537.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7537hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lrza1 a.2.7.4 (A:245-309) Me 40.8 9.2 0.00067 25.1 2.7 42 142-183 10-51 (65)
2 d1v10a1 b.6.1.3 (A:1-136) Lacc 32.5 5.5 0.0004 28.2 0.6 12 205-216 59-71 (136)
3 d1qvra2 c.37.1.20 (A:149-535) 28.2 26 0.0019 28.1 4.1 16 164-179 308-323 (387)
4 d2iaza1 a.281.1.2 (A:1-111) Hy 27.6 46 0.0033 21.8 4.7 70 105-179 28-97 (111)
5 d1b3qa1 a.30.2.1 (A:293-354) H 27.3 21 0.0015 22.3 2.7 22 20-41 4-25 (62)
6 d2clya1 f.52.1.1 (A:79-183) AT 22.4 1.2E+02 0.0085 21.0 8.0 60 119-181 21-80 (105)
7 d1qbaa1 b.1.18.2 (A:781-885) B 19.1 12 0.00085 26.1 0.1 30 188-218 11-40 (105)
8 d2oeea1 a.281.1.2 (A:3-112) Hy 18.9 43 0.0032 21.8 3.1 69 105-178 27-95 (110)
9 d1hfua1 b.6.1.3 (A:1-131) Lacc 18.8 13 0.00092 25.9 0.2 11 206-216 60-71 (131)
10 d2piha1 a.281.1.1 (A:2-124) Un 17.0 1E+02 0.0075 20.2 4.8 68 107-178 34-101 (123)
No 1
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=40.75 E-value=9.2 Score=25.09 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhchHHH
Q psy7537 142 AETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAE 183 (224)
Q Consensus 142 AE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDSnAq 183 (224)
.+...|.-.|+.+.+-|..|...++---....|..||+|+-.
T Consensus 10 ~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ 51 (65)
T d1lrza1 10 EERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQ 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777777777777777654
No 2
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]}
Probab=32.51 E-value=5.5 Score=28.16 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=9.7
Q ss_pred Ccccee-cceeee
Q psy7537 205 SGTTIH-HGIRYR 216 (224)
Q Consensus 205 sgttih-hgiryr 216 (224)
-+|+|| ||+++.
T Consensus 59 ~~tsiH~HGl~~~ 71 (136)
T d1v10a1 59 RATSIHWHGFFQA 71 (136)
T ss_dssp CCBCEEEETCCCT
T ss_pred cceeEEecccccc
Confidence 478999 999874
No 3
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=28.23 E-value=26 Score=28.14 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=7.9
Q ss_pred HhhhhchHHHHHHhhc
Q psy7537 164 TKKQLDSQAEMKKQFD 179 (224)
Q Consensus 164 ~KrlsDe~AalKKQlD 179 (224)
.+.+.+++..+|.+++
T Consensus 308 ek~~l~~i~~Lk~~Le 323 (387)
T d1qvra2 308 EREILRKLREAQHRLD 323 (387)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555553
No 4
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=27.55 E-value=46 Score=21.82 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=43.9
Q ss_pred hhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhc
Q psy7537 105 ESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFD 179 (224)
Q Consensus 105 qSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlD 179 (224)
...-.+|.|.+.+..+-..++.+|.- .+..|.-.++.+++ ++.++..+++.|..++.......+|-.-++
T Consensus 28 ~~~v~~D~ea~~l~~~f~~~q~~lq~-~q~~G~~~~~e~~~----~l~~l~~~i~~n~~i~~~~~Ae~~l~~ll~ 97 (111)
T d2iaza1 28 KDAIAADAEASKIFTDYLAFQEEIQK-LAQTGQMPDASFQA----KMEGFGKQIQGNSLLSEFFTKQQQLAIYLS 97 (111)
T ss_dssp HHHHHHCHHHHHHHHHHHHHGGGTTT-TCC----CCHHHHH----HHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHH-HHHcCCCCCHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33445678888888888877777763 44445445444443 456777888888888887776666555443
No 5
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=27.34 E-value=21 Score=22.26 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=17.8
Q ss_pred ccCChhhhHHHHHhhHHHHhhh
Q psy7537 20 FNVDSDKIDSLIKKSEEILESK 41 (224)
Q Consensus 20 fnvdsdkidslikkseeilesk 41 (224)
..||.+++|.|+.-..|+.-++
T Consensus 4 iRVd~~kLD~LmnlvGELvi~r 25 (62)
T d1b3qa1 4 VRVDIEKLDNLMDLMGELVIAR 25 (62)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHH
Confidence 4689999999999988876443
No 6
>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.39 E-value=1.2e+02 Score=21.03 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=33.0
Q ss_pred chHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhchH
Q psy7537 119 DSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQ 181 (224)
Q Consensus 119 De~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDSn 181 (224)
+.+.+++..+++..+.+..++.+..+-..+.++++|.-. .+.-+|+..--.+.|+.||++
T Consensus 21 ~~i~~l~~~Ie~~k~~q~~~~~~~~Lfda~kEnvalqlE---a~yrerl~~v~~evK~rLDy~ 80 (105)
T d2clya1 21 ASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALE---VTYRERLHRVYREVKNRLDYH 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777666666666666665556666555432 133344444444444444444
No 7
>d1qbaa1 b.1.18.2 (A:781-885) Bacterial chitobiase (N-acetyl-beta-glucoseaminidase), C-terminal domain {Serratia marcescens [TaxId: 615]}
Probab=19.08 E-value=12 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=17.7
Q ss_pred HHHhHHHHHhhhcccccCccceecceeeeEe
Q psy7537 188 LAQRYDDFMKELDYKETSGTTIHHGIRYRVQ 218 (224)
Q Consensus 188 laqryddfmkeldyketsgttihhgiryrvq 218 (224)
+.+-|..|..-|+++|-.--. ++||.|||-
T Consensus 11 ~~kdW~~Fan~lg~kelprLd-~~Gi~yrlP 40 (105)
T d1qbaa1 11 LEKDWLRFANILGQRELAKLD-KGGVAYRLP 40 (105)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH-HTTCCCCCC
T ss_pred HHHHHHHHHHHHhHHHHHHHH-hCCCcccCC
Confidence 445566666666665543322 568888763
No 8
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus subtilis [TaxId: 1423]}
Probab=18.87 E-value=43 Score=21.75 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=33.7
Q ss_pred hhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhh
Q psy7537 105 ESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQF 178 (224)
Q Consensus 105 qSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQl 178 (224)
..+-.+|.+.+++..+.-.++.++. +.+..|.-.++.+ -.++-++.+.++.|..++....-.-+|-.-|
T Consensus 27 ~~~i~~d~~a~~li~~f~~~q~~~q-~~q~~G~~~~~e~----~~~l~~~~~~l~~n~~v~~~~~Ae~~l~~ll 95 (110)
T d2oeea1 27 YDEVNADESAKRMFENFRDVQLRLQ-QKQMAGEEITQEE----VTQAQKTVALVQQHEKISQLMEAEQRMSMLI 95 (110)
T ss_dssp HHHHHHSHHHHHHHHHHHHHCC-----------------------CHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHH-HHHHcCCCCcHHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3344567777777777777666665 3333343333333 3355667777888877777766555554443
No 9
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}
Probab=18.79 E-value=13 Score=25.94 Aligned_cols=11 Identities=55% Similarity=0.836 Sum_probs=8.7
Q ss_pred cccee-cceeee
Q psy7537 206 GTTIH-HGIRYR 216 (224)
Q Consensus 206 gttih-hgiryr 216 (224)
.++|| ||+.++
T Consensus 60 ~tsiH~HGl~~~ 71 (131)
T d1hfua1 60 PTSIHWHGLFQR 71 (131)
T ss_dssp SBCEEEETCCCT
T ss_pred cceEEeCCcccC
Confidence 57899 998764
No 10
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=16.96 E-value=1e+02 Score=20.23 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=39.1
Q ss_pred hhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhh
Q psy7537 107 KKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQF 178 (224)
Q Consensus 107 k~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQl 178 (224)
+-.+|.|...+..+.-..+.++... +..|... . .+..-.++.+++++++.|..++.......++-.-|
T Consensus 34 ~v~~d~ea~~li~~f~~~q~~~q~~-q~~g~~~--~-~~e~~~el~~l~~~l~~np~v~~y~~Ae~~l~~lL 101 (123)
T d2piha1 34 QINENDKVSTIVNQIKALQKQAVNL-KHYEKHE--A-LKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLL 101 (123)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHH-HHTTCHH--H-HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHH-HHhCCCC--C-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3445777777777776666555442 3323211 1 23334466777888888877777666555554443
Done!