RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7537
(224 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 40.0 bits (93), Expect = 7e-04
Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 44 ESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQ 103
E E TE + ++ + + E E ETK + ESE E + +GE + + + +
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEI--PAERKGEQEGEGEIE 700
Query: 104 AESKKQVDAETKKQVDSQAETKKQ-LDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQA 162
A+ ++V+ + ET+ + + + E + + + E + + + +AE K + +++
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE-EVEDEGEGEAEGKHEVETEG 759
Query: 163 ETKKQLDSQAEMKKQFDSQAEAKKH 187
+ K+ + + + E +
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQ 784
Score = 34.2 bits (78), Expect = 0.059
Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 5/149 (3%)
Query: 32 KKSEEILESKKIESPSAAI-ESETETNKQVDNQAETKKQLESEIETKKQLESEAETK-KQ 89
+ EE + E + E E + + + E + + E E K + E E E + K+
Sbjct: 644 RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Query: 90 VDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLD---SQAETKKQFDSQAETKK 146
D +GET+ + + E + ++++ E ++ D +AE K + +++ + K+
Sbjct: 704 ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKE 763
Query: 147 QFDSQAETKKQFDSQAETKKQLDSQAEMK 175
+ + + E + Q EMK
Sbjct: 764 TEHEGETEAEGKEDEDEGEIQAGEDGEMK 792
Score = 32.3 bits (73), Expect = 0.19
Identities = 26/163 (15%), Positives = 70/163 (42%), Gaps = 7/163 (4%)
Query: 46 PSAAIESETETNKQVDNQAE-----TKKQLESEIETKKQLESEAETKKQVDSQGETKKQV 100
P A + + + +K +AE T ++ E E + + E+ + + + + ETK +
Sbjct: 620 PVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGEN 679
Query: 101 DSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDS 160
+S+ E + E + + + +A+ + + + + E + D E + +
Sbjct: 680 ESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEG-EIETGEEG 738
Query: 161 QAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKE 203
+ E + + + +AE K + +++ + K+ + + + D E
Sbjct: 739 E-EVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDE 780
Score = 31.9 bits (72), Expect = 0.28
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 33 KSEEILESKKIESPSAAIESETETNKQVDNQAETKKQ-LESEIETKKQLESEAETKKQVD 91
K E E + E + A +E E + + E + E E E K ++E+E + +K+ +
Sbjct: 707 KGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGD-RKETE 765
Query: 92 SQGETKKQV-------DSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAET 144
+GET+ + + QA ++ + + + E + + + E + Q ++QA+
Sbjct: 766 HEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADD 825
Query: 145 KKQFDSQAETKKQFDSQAETKK 166
+ D E + ++Q E K+
Sbjct: 826 TEVKDETGEQELNAENQGEAKQ 847
Score = 31.1 bits (70), Expect = 0.48
Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 44 ESPSAAIESETETNKQ-VDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDS 102
E+ + +E E ET + +++ E + E E E + + E EAE K +V+++G+ K+
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGE-EVEDEGEGEAEGKHEVETEGDRKETEHE 767
Query: 103 QAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQA 162
+ + E + ++ + + + + D AE K + E + + + E + Q ++QA
Sbjct: 768 GETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGK----VEHEGETEAGEKDEHEGQSETQA 823
Query: 163 ETKKQLDSQAEMKKQFDSQAEAKK 186
+ + D E + ++Q EAK+
Sbjct: 824 DDTEVKDETGEQELNAENQGEAKQ 847
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 35.7 bits (83), Expect = 0.017
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 4 MDTAQVLDKLKHEEAKFNVDSDKIDSL-IKKSEEILESKKIESPSAAIESETETNKQVDN 62
++ LDKL+ K N ++ + +K EE+++ + E IE E +
Sbjct: 53 TKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEK--IEKE------IKE 104
Query: 63 QAETKKQLESEIETKKQLESEAE 85
E +LE+EI+ +Q E
Sbjct: 105 LEEEISELENEIKELEQEIERLE 127
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 35.0 bits (80), Expect = 0.032
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 21/157 (13%)
Query: 44 ESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQ 103
E+ SA ++ N+Q Q + + E +K V + E +Q +
Sbjct: 907 EANSARRDTMEIQNEQKPTQDGPAAEAQPAQEN----TVVESAEKAVAAVSEAAQQAATA 962
Query: 104 ---------AESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAET 154
+K V KK ++A KK++ +A KK A KK +A
Sbjct: 963 VASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKK-----AAAKKAAAKKAAA 1017
Query: 155 KKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQR 191
KK+ +A KK A K ++ A+K ++
Sbjct: 1018 KKKVAKKAPAKKVARKPAAKKA---AKKPARKAAGRK 1051
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 34.1 bits (79), Expect = 0.048
Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 4/161 (2%)
Query: 3 GMDTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDN 62
G+ + ++L+KLK + ++ S +++ E E K E+ A E
Sbjct: 14 GVSSKELLEKLK----ELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAE 69
Query: 63 QAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQA 122
+ + + + + A ++ E + ++ A K A KK+
Sbjct: 70 EEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPK 129
Query: 123 ETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAE 163
+ K + + K+ + +++ + KK+ E
Sbjct: 130 KKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTE 170
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 33.9 bits (78), Expect = 0.064
Identities = 38/205 (18%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 10 LDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKI--------ESPSAAIESETETNKQVD 61
D+L+ EA+ ++++E +LE+ K SP E+ E ++V+
Sbjct: 421 RDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHV--ETIEEDRERVE 478
Query: 62 NQAETKKQLESEIETKKQ----LESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQ 117
+ LE E+E ++ E E + +++ E ++ ++ +++ E +++
Sbjct: 479 ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER 538
Query: 118 VDSQAETKKQLDSQAETKK--------QFDSQAETKKQFDSQ-AETKKQFDSQAETKKQL 168
+ E +L+++AE K+ + + E + +S+ AE K++ +S + L
Sbjct: 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL 598
Query: 169 DSQAEMKKQFDSQAEAKKHLAQRYD 193
+ A+ + + + E ++ LA+ D
Sbjct: 599 AAIADAEDEIERLREKREALAELND 623
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 32.8 bits (75), Expect = 0.11
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 136 KQFDSQAETKKQFDSQAETKKQ-FDSQAETKKQLDSQ-AEMKKQFDSQAEAKKHLAQRYD 193
F+ E + +D + F A L + + E L Y
Sbjct: 204 VDFEWPDEYRGFYDRAKRLDRPFFLYLAPPDPHLSRRLPAADGLPAEEEEDGARLMTVYA 263
Query: 194 DFMKELDYK 202
++ LD +
Sbjct: 264 ACVRYLDDQ 272
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 32.7 bits (74), Expect = 0.15
Identities = 22/160 (13%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Query: 28 DSLIKKSEEILESKKIESPSAAIESET---ETNKQVDNQAETKKQLESEIETKKQLESEA 84
+ + ++ + K+ ES A ++ E +K+ + + +++ + + + E
Sbjct: 191 EKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEV 250
Query: 85 ETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAET 144
K+Q S E K+ + + ++ +Q E KK + + K +
Sbjct: 251 RQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQ 310
Query: 145 KKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEA 184
+ + + K+ ++Q + + + + K Q ++Q +
Sbjct: 311 ESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTS 350
Score = 27.3 bits (60), Expect = 8.8
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Query: 48 AAIESETETNKQVDNQAETKKQLESEIETKK-QLESEAETKKQVDSQGETKKQVDSQAES 106
A+ + E K+ ES+ + K+ Q E KKQ+D+ +K +Q +
Sbjct: 184 EALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNA 243
Query: 107 KKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKK 166
KQ D +KQ +++ K S + KQ + + + K ++
Sbjct: 244 DKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDH 303
Query: 167 QLDSQAEMKKQFDSQAEAKKHLAQR 191
+ + K + +AE K+ AQ+
Sbjct: 304 KAFDLKQESKASEKEAEDKELEAQK 328
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 32.4 bits (75), Expect = 0.16
Identities = 33/185 (17%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 21 NVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETK--- 77
+ KI ++++ ILE K E+ + E+ E +++ + + E E+ +
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKL---RNEFEKELRERRNE 83
Query: 78 -KQLESEAETKK-QVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETK 135
++LE K+ +D + E ++ + + E K++ + +++++ + E ++L E
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL--IEEQL 141
Query: 136 KQFD-----SQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLA- 189
++ + + E K+ + E + + ++ A K+++ +A+ + + +AK+ LA
Sbjct: 142 QELERISGLTAEEAKEILLEKVEEEARHEA-AVLIKEIEEEAKEE----ADKKAKEILAQ 196
Query: 190 --QRY 192
QR
Sbjct: 197 AIQRC 201
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 32.4 bits (74), Expect = 0.21
Identities = 34/191 (17%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 10 LDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQ 69
L++L+ E ++ + +++ ++++E+ +E K E E E +++ E ++
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR-EELEELQEELLELKEEIEE 299
Query: 70 LESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLD 129
LE EI ++ E E + + + +++ + E+ K+ E + ++ + +L+
Sbjct: 300 LEGEISLLRERLEELENELEELEERL--EELKEKIEALKEELEERETLLEELEQLLAELE 357
Query: 130 SQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLA 189
E ++ S + + +A ++ + +AE + + E+K++ +S E + L+
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417
Query: 190 QRYDDFMKELD 200
+R +D +EL
Sbjct: 418 ERLEDLKEELK 428
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 32.1 bits (73), Expect = 0.22
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 22 VDSDKIDSLIKKSEEILESKKIESPSAAIESETETN---------KQVDNQAETKKQLES 72
V SD I+ + L K A + S T+ + KQV +A +
Sbjct: 74 VYSDNSSKTIEPDSQDLLLDKRGEHKARVLSATDDDTHSQTDDIIKQVTQKAGQDDSDQQ 133
Query: 73 EIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQV 118
E ++ Q S+AE+ + V +T ++VD + + D +T + V
Sbjct: 134 EKNSQSQSASQAESLEHVQQSAQTSEKVDEKEPLLTKTDKQTDQTV 179
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 32.2 bits (74), Expect = 0.23
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 62 NQAETKKQLESEIET-KKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDS 120
+ L+ E+ T K+QLE +A K Q + E ++Q + A + E K+Q +
Sbjct: 139 DPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQ-ELVALEGLAAELEEKQQ-EL 196
Query: 121 QAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQ 171
+A+ +QL +A Q + + +K+ QA + + + ET+ +D Q
Sbjct: 197 EAQL-EQLQEKAAETSQ--ERKQKRKEITDQAAKRLELS-EEETRILIDQQ 243
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 32.0 bits (72), Expect = 0.25
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Query: 12 KLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLE 71
K K EEAK ++ K ++ E +K E+ E + +AE KK+ +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 72 SEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDS-QAETKKQLDS 130
+ ++ + +A+ K+ + + + +AE KK+ D KK ++ +A+ K+
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 131 QAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKK 186
+A+ ++ +AE K+ D + ++ E KK+ + + + AEAKK
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
Score = 31.3 bits (70), Expect = 0.45
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Query: 14 KHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESE 73
K EEAK + K KK E L+ K+ E A E + + AE K+ E +
Sbjct: 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
Query: 74 IETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKK---QVDSQAETKKQLDS 130
+ ++ + E +K+ + + + +AE K+ +AE KK ++ E K
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
Query: 131 QAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAE 173
+A+ + + D + + + D + + K + E KK + + E
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
Score = 30.5 bits (68), Expect = 0.96
Identities = 35/172 (20%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 11 DKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQL 70
+K K +EAK + K D KK+EE ++ + + + + + + K+ +A+ +
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Query: 71 ESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDA-----ETKKQVDSQAETK 125
E+EA +K ++ + ++ +KK+ + E KK+ + +
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 126 KQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQ 177
+L A KK+ D +A+ K + +A+ K+ +A+ + +AE K+
Sbjct: 1408 DELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 28.6 bits (63), Expect = 3.9
Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 11 DKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQL 70
+ K EEAK K D+ KK+EE KK + E + + ++ A KK+
Sbjct: 1369 AEKKKEEAK-----KKADAAKKKAEEK---KKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
Query: 71 ESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDS 130
+ + ++ + E KK+ + + + E+KK +A+ K + +A+ K+
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
Query: 131 QAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQ 167
+A+ + +AE K+ +A+ + +A+ K+
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 28.2 bits (62), Expect = 4.6
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 26 KIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETK-KQLESEA 84
K D+ KK+EE K E+ A E+ + + + +AE ++ + E + K + +A
Sbjct: 1330 KADAAKKKAEE--AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
Query: 85 ETKKQVDSQGETKKQVDSQAESKKQVDAETKK--QVDSQAETKKQLDSQAETKKQFDSQA 142
E KK+ D + ++ +A+ K+ A KK + +AE KK+ D +A+ K + +A
Sbjct: 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKA 1446
Query: 143 ETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKK 186
+ K+ +A+ ++ +AE K+ D + ++ EAKK
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 31.6 bits (72), Expect = 0.35
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 93 QGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDS--QAETKKQFDSQAETKKQFDS 150
+ + K QVD+ + +T+ + + T K S Q K + SQ + S
Sbjct: 856 RNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKS 915
Query: 151 QAETKKQFDSQAETKKQLDSQAEMKKQ 177
E DS E K+ + K
Sbjct: 916 AQERMPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 30.5 bits (69), Expect = 0.61
Identities = 23/125 (18%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 35 EEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQG 94
+ ILE E A+++ E + ++ + L E+E KQ + + + G
Sbjct: 286 QSILEKLSSELDEASLKKLQEAIDKSESSELDEDLLLEEVEKSKQ-----KFEPLLAQYG 340
Query: 95 ETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAET 154
E+ ++ S+ ++ +V++ + V+ + T ++ D + ++Q E +K + + +
Sbjct: 341 ESFQEWRSKLQALAKVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKL 400
Query: 155 KKQFD 159
++Q D
Sbjct: 401 REQAD 405
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 30.4 bits (69), Expect = 0.78
Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 28 DSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETK 87
LIK + + ES+K + Q++ KQLE+E+ L+++ +
Sbjct: 125 PELIKGQQSLFESRK-----------STLRAQLELILAQIKQLEAELAG---LQAQLQAL 170
Query: 88 KQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQ-AETKK 146
+Q Q++ +E + +K + S+ E + +AE + + AE +
Sbjct: 171 RQ---------QLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEV 221
Query: 147 QFDSQAETKKQFDSQAETKKQ 167
E + + +T ++
Sbjct: 222 LKRQIDELQLERQQIEQTFRE 242
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 30.4 bits (69), Expect = 0.84
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 77 KKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAE--- 133
+++L EAE Q + +K + E+K+ + E +Q +++L + E
Sbjct: 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLV 87
Query: 134 -TKKQFDSQAETKKQFDSQAETKKQFDSQ-----AETKKQLDSQAEMKKQFDSQAEAKKH 187
++Q D++AE ++Q E +++ S E +KQLD++ + +A+K
Sbjct: 88 QKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGL-TPEQARKL 146
Query: 188 LAQRYDDFMKE 198
L + D ++E
Sbjct: 147 LLKLLDAELEE 157
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.2 bits (68), Expect = 0.86
Identities = 27/136 (19%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 51 ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQV 110
+ E ++ + E KQLE K++L ++ + K+ ++ + + E+ +
Sbjct: 87 QQAEELQQKQAAEQERLKQLE-----KERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKA 141
Query: 111 DAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDS 170
A K + +++A+ +A + + ++AE K+ ++A+ K + ++ A+ +
Sbjct: 142 AAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKK 201
Query: 171 QAEMKKQFDSQAEAKK 186
+AE + + + AEAKK
Sbjct: 202 KAEAEAKKKAAAEAKK 217
Score = 29.8 bits (67), Expect = 1.3
Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 63 QAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQA 122
QAE + K + E+EA+ + + + ++AE+ K+ AE KK+ +++A
Sbjct: 133 QAEEAAAKAAA-AAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEA 191
Query: 123 ETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQA 182
K +++ + + + +A + + + AE K ++A + + ++ + +A
Sbjct: 192 AAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAA-AAKAAAEAKAAAEKAAAAKAAEKA 250
Query: 183 EAKKHLAQRYDDFMKELD 200
A K A+ DD LD
Sbjct: 251 AAAKAAAE-VDDLFGGLD 267
Score = 28.6 bits (64), Expect = 2.8
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 49 AIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKK 108
A E + + + + + +K+ + E KKQ E A+ Q E + A +K
Sbjct: 89 AEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA-AKA 147
Query: 109 QVDAETKKQVDS--QAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKK 166
+ +AE K+ + +A + + ++AE K+ ++A+ K + ++ A+ + +AE +
Sbjct: 148 KAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEA 207
Query: 167 QLDSQAEMKKQFDSQAEAKKHLA 189
+ + AE KK+ ++A+A A
Sbjct: 208 KKKAAAEAKKKAAAEAKAAAAKA 230
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 30.1 bits (68), Expect = 1.0
Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 13/173 (7%)
Query: 20 FNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQ 79
FN++SD I E+ S+K + S + N ++ + + + +K
Sbjct: 127 FNLNSD-----ISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSK-----QDKADNQKA 176
Query: 80 LESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFD 139
S + Q + K + + +T Q S + + DS ++
Sbjct: 177 PSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQY 236
Query: 140 SQ--AETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQ 190
S+ +T+K + SQ++ K S QL +Q E+K + + + Q
Sbjct: 237 SEDAKKTQKDYASQSKKDKTETSN-TKNPQLPTQDELKHKSKPAQSFENDVNQ 288
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 29.6 bits (67), Expect = 1.4
Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 51 ESETETNKQVDNQAETKKQLESEI-ETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ 109
+S + +++ K+L+ I + + + + K + + E + + +K+
Sbjct: 277 KSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKK 336
Query: 110 VDAETKKQVDSQAETKKQLDSQAETK 135
+ + KKQ++ E ++L+ QA K
Sbjct: 337 KEEKKKKQIERLEERIEKLEVQATDK 362
Score = 28.1 bits (63), Expect = 3.5
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 58 KQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQ 117
K ++ E K L+ +++ K++ E + + K + + E E KK+
Sbjct: 277 KSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKR--KLKSKFERDNEKLDAEVKEKKKE 334
Query: 118 VDSQAETKKQLDSQAETKKQFDSQAETK 145
+ + KKQ++ E ++ + QA K
Sbjct: 335 KKKEEKKKKQIERLEERIEKLEVQATDK 362
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.6 bits (66), Expect = 1.7
Identities = 24/132 (18%), Positives = 48/132 (36%)
Query: 21 NVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQL 80
N D D + L +E SK + +E+ E ++ D + + Q E +E L
Sbjct: 3984 NEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTL 4043
Query: 81 ESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDS 140
+ + + D + +K + E Q + E+ + E +Q + +
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHP 4103
Query: 141 QAETKKQFDSQA 152
+ + K F S
Sbjct: 4104 KMDAKSTFASAE 4115
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 2.1
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 16 EEAKFNV--DSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESE 73
EEAK + D +K++ LI LE + E A E+E + + E +++ E
Sbjct: 505 EEAKKLIGEDKEKLNELIAS----LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560
Query: 74 IETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQA--ETKKQLDSQ 131
E + +L EAE + Q + E KK+ D + +Q+ V + E +K+L+
Sbjct: 561 QEEEDKLLEEAEKEAQ-QAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKA 619
Query: 132 AETKKQ 137
E K++
Sbjct: 620 NEKKEK 625
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 29.2 bits (65), Expect = 2.1
Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 1/136 (0%)
Query: 63 QAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQA 122
+ +++ ++ K ++ + K ++ + + E
Sbjct: 435 KRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQEQMTAALKAL 494
Query: 123 ETKKQLDSQAETKKQFDSQAETKKQFDS-QAETKKQFDSQAETKKQLDSQAEMKKQFDSQ 181
+Q + K+ S ++ Q K+ Q + ++Q K+ +
Sbjct: 495 LAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYT 554
Query: 182 AEAKKHLAQRYDDFMK 197
++ + L Q+ D F
Sbjct: 555 SQLAELLDQQADRFEL 570
>gnl|CDD|182066 PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific
transporter subunit IIABC; Provisional.
Length = 631
Score = 28.9 bits (65), Expect = 2.3
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 16/55 (29%)
Query: 174 MKKQFDSQAEAKKHLAQR---------YDDFMKELDYKETSGTT-------IHHG 212
+ +F S+ EA LAQR + F++E+ +E+ G T + HG
Sbjct: 14 LNARFTSREEAIHALAQRLAALGKISSTEQFLEEVYRRESLGPTALGEGLAVPHG 68
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 28.7 bits (64), Expect = 2.9
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 22/128 (17%)
Query: 58 KQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQ 117
+ +++AE K E E+E KK+ E +A+ K E KK +Q E+K ++ A+
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEK-------ELKKLKAAQKEAKAKLQAQQAS- 53
Query: 118 VDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQ 177
D KK KK E D E D+ KK+L SQ M KQ
Sbjct: 54 -DGTNVPKKS------EKKSRKRDVE-----DENPEDFIDPDTPFGQKKRLSSQ--MAKQ 99
Query: 178 FDSQAEAK 185
+ A K
Sbjct: 100 YSPSAVEK 107
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 28.5 bits (64), Expect = 3.5
Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 20 FNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQ 79
+ + K+DS + +L+ + +++ A E K + + K+ + ++ K+
Sbjct: 137 KSSELKKVDSQLPDPRALLKGEDLKTVETA----EEIEKSLKAMQQKWKKRKKDLPNKQD 192
Query: 80 LESEAETKKQVDSQGETK-KQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQF 138
LE E KK++++ + K + K++ D K+ + + K + KKQ
Sbjct: 193 LE---EYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQL 249
Query: 139 DSQ-AETKKQ 147
+ AE KK
Sbjct: 250 KADLAELKKA 259
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 28.5 bits (64), Expect = 3.7
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 38 LESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETK 97
L + IES +++ +++ + E +LE E +K L+ E + + + E +
Sbjct: 807 LIDQIIESEEERLKALRIQREEMLMRPE---ELELINEEQKNLKQEIKLELSEIQEAEEE 863
Query: 98 KQVDSQAESKKQVDAETKKQVDSQAETK----KQLDSQAETKKQFDSQAETKKQFDSQAE 153
Q ++ +++ K+++ K K + S E K+ +T K+ E
Sbjct: 864 IQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQ----DEKTTKKKKKDLE 919
Query: 154 TKKQ 157
+
Sbjct: 920 KTDE 923
>gnl|CDD|227900 COG5613, COG5613, Uncharacterized conserved protein [Function
unknown].
Length = 400
Score = 28.0 bits (62), Expect = 4.2
Identities = 16/88 (18%), Positives = 35/88 (39%)
Query: 49 AIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKK 108
++ E + +V + S++ + E E K + +K ++
Sbjct: 81 SVSGEVTSATEVAEAQRSSYPYLSQVNLASPQQFEIELAKLLSLVESAQKVSKLLNSNEI 140
Query: 109 QVDAETKKQVDSQAETKKQLDSQAETKK 136
+D TKK ++Q + KKQ + + +K
Sbjct: 141 YMDQNTKKMENNQQKIKKQEEEAKKAEK 168
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 28.1 bits (62), Expect = 4.3
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 53 ETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDA 112
+T + + + + Q +S ++KQL++ A Q+ SQ K +Q E + Q A
Sbjct: 150 QTRLKTLAEQRRQLEAQAQSLQASQKQLQASAT---QLKSQVLDLKLRSAQIEQEAQNLA 206
Query: 113 ETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKK--QFDSQAETKKQLDS 170
++ E + + A+ Q Q + + +Q + Q + ++L++
Sbjct: 207 TRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLET 266
Query: 171 QAEMKKQFDSQAEA 184
+Q +Q EA
Sbjct: 267 AQARLEQEVAQLEA 280
>gnl|CDD|227668 COG5377, COG5377, Phage-related protein, predicted endonuclease
[DNA replication, recombination, and repair].
Length = 319
Score = 27.9 bits (62), Expect = 4.8
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 52 SETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQ--GETKKQVDSQAESKKQ 109
++TE K VD + L K+ + + K+++++ E K+
Sbjct: 216 AKTEAVKTVDLPHFYAEALAVLHSIKRDISELEDFAKEIENRLKNELKEAEYGFTA---D 272
Query: 110 VDAETKKQVDSQAETKK 126
DA K ++ +TK+
Sbjct: 273 YDAVWKPVDSNRVDTKR 289
>gnl|CDD|222859 PHA02535, P, terminase ATPase subunit; Provisional.
Length = 581
Score = 28.1 bits (63), Expect = 4.9
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 13 LKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKK 68
L +E K D +ID LI++ E + ++ + +E + N V N+ + K
Sbjct: 64 LIEKENKTGGDYKEIDLLIRQHERLARVRR----YSGTGNEADLNPNVANRNKGPK 115
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 27.7 bits (62), Expect = 5.4
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 40 SKKIESPSAAIESETETNKQVDNQAETKK-QLESEIETKKQLESEAETKKQVDSQGETKK 98
+KK++ S E E ET+ +++ +ETK + E E T++ +E K+ D + K
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDK 282
Query: 99 QVDSQAESKK 108
+ + +
Sbjct: 283 LEILKEKKDE 292
>gnl|CDD|129946 TIGR00868, hCaCC, calcium-activated chloride channel protein 1.
found a row in 1A13.INFO that was not parsed out AC
found a row in 1A13.INFO that was not parsed out EC
found a row in 1A13.INFO that was not parsed out GA
found a row in 1A13.INFO that was not parsed out SO
found a row in 1A13.INFO that was not parsed out RH
found a row in 1A13.INFO that was not parsed out EN
found a row in 1A13.INFO that was not parsed out GS
found a row in 1A13.INFO that was not parsed out AL
found a row in 1A13.INFO that was not parsed out The
Epithelial Chloride Channel (E-ClC) Family (TC 1.A.13)
found a row in 1A13.INFO that was not parsed out found a
row in 1A13.INFO that was not parsed out Mammals have
multiple isoforms of epithelial chloride channel
proteins. The first member of this family to be
characterized was a respiratory epithelium, Ca found a
row in 1A13.INFO that was not parsed out 2+-regulated,
chloride channel protein isolated from bovine tracheal
apical membranes. It was biochemically characterized as
a 140 kDa complex. The purified found a row in 1A13.INFO
that was not parsed out complex when reconstituted in a
planar lipid bilayer behaved as an anion-selective
channel. It was regulated by Ca 2+ via a calmodulin
kinase II-dependent found a row in 1A13.INFO that was
not parsed out mechanism. When the cRNA was injected
into Xenopus oocytes, an outward rectifying,
DIDS-sensitive, anion conductance was measured. A
related gene, found a row in 1A13.INFO that was not
parsed out Lu-ECAM, was cloned from the bovine aortic
endothelial cell line, BAEC. It is expressed in the lung
and spleen but not in the trachea. Homologues are found
in found a row in 1A13.INFO that was not parsed out
several mammals, and at least three
paralogues(hCaCC-1-3) are present in humans, each with
different tissue distributions. found a row in 1A13.INFO
that was not parsed out [Transport and binding proteins,
Anions].
Length = 863
Score = 27.9 bits (62), Expect = 5.6
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 178 FDSQAEAKKHLAQ-----RYDDFMKELDYKETSGTTIHHGIRYRVQ 218
FDS A K L Q D L + GT+I G++ Q
Sbjct: 349 FDSAAYIKNELIQITSSAERDALTANLPTAASGGTSICSGLKAAFQ 394
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 27.5 bits (61), Expect = 5.9
Identities = 35/193 (18%), Positives = 78/193 (40%), Gaps = 10/193 (5%)
Query: 12 KLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIES-----ETETNKQVDNQAET 66
+ + E+A+ + + + +E+ +K +E+ + ETE Q +
Sbjct: 286 RREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFIN 345
Query: 67 KKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKK 126
Q +++ E K Q ++ ET ++ + +AE +Q + Q +
Sbjct: 346 AAQRQAQEEAKAAANIAEAIGAQAEAAVETARETE-EAERAEQAALVAAAEAAEQEQV-- 402
Query: 127 QLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKK 186
++ +AE K + + +++A +K ++AE K+ L ++A + AE K
Sbjct: 403 EIAVRAEAAKAEAEAQAAEIKAEAEAIREKG-KAEAEAKRAL-AEAIQVLGDAAAAELFK 460
Query: 187 HLAQRYDDFMKEL 199
L Q + +E
Sbjct: 461 ALVQALPEVAEEA 473
>gnl|CDD|219018 pfam06419, COG6, Conserved oligomeric complex COG6. COG6 is a
component of the conserved oligomeric golgi complex,
which is composed of eight different subunits and is
required for normal golgi morphology and localisation.
Length = 615
Score = 27.6 bits (62), Expect = 6.8
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 60 VDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVD 119
+ N E++++L +IE K+ + S GE K+ AE K++ + K +
Sbjct: 11 IQNTLESRRKLRLDIE-----------KELLKSNGEILKEFGPVAEQLKRIGEDLSKLNN 59
Query: 120 SQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQ 157
+ E K QL++ + K +A T + Q E KK+
Sbjct: 60 TCEEMKSQLNNAKQDTKDLLEEASTLMEQKRQIELKKK 97
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 26.9 bits (60), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 9 VLDKLKHEEAKFNVDSDKIDSLIKKSEEILES 40
VLD KH + V D+++ L++K E L
Sbjct: 186 VLDDAKH----YWVGDDEVEKLLRKGEGWLAE 213
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 27.1 bits (61), Expect = 9.2
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 12/145 (8%)
Query: 5 DTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQA 64
+LD K +S SL+KK + +E K+ + N +++
Sbjct: 88 TEELLLDYWNEIIEKAKKNSPLFKSLLKKQKVEVEGNKLI---------IKVNNEIERDH 138
Query: 65 ETKKQLESEIETKKQL---ESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQ 121
KK L I+ ++ + + + + K + + E +K + +
Sbjct: 139 LKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLE 198
Query: 122 AETKKQLDSQAETKKQFDSQAETKK 146
AE KKQ + + + K
Sbjct: 199 AEKKKQSKNFDPKEGPVQIGKKIDK 223
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.298 0.115 0.281
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,778,697
Number of extensions: 841444
Number of successful extensions: 2711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1830
Number of HSP's successfully gapped: 617
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 57 (25.7 bits)