RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7537
(224 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 7e-04
Identities = 40/275 (14%), Positives = 83/275 (30%), Gaps = 87/275 (31%)
Query: 2 DGMDTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESK----------------KIES 45
DG+ T D KH V+ DK+ ++I+ S +LE I
Sbjct: 339 DGLAT---WDNWKH------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-- 387
Query: 46 PSAAI-----ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQV-DSQGETKKQ 99
P+ + + V N+ +E KQ + E+ + E K +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE------KQPK---ESTISIPSIYLELKVK 438
Query: 100 VDSQAES-KKQVDA-ETKKQVDSQAETKKQLD-----------SQAETKKQFDSQAETKK 146
++++ + VD K DS LD E E
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-------HPERMT 491
Query: 147 QFDS--------QAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQ---RYDDF 195
F + + + + + L++ ++K K ++ +Y+
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERL 544
Query: 196 MKEL-DYKETSGTTIHHGIRYR--VQF---NENNS 224
+ + D+ + +Y ++ E+ +
Sbjct: 545 VNAILDFLPKIEENLICS-KYTDLLRIALMAEDEA 578
Score = 34.8 bits (79), Expect = 0.022
Identities = 35/244 (14%), Positives = 61/244 (25%), Gaps = 73/244 (29%)
Query: 7 AQVLDKLKHEEAKFNVDSDKIDSLIK-KSEEIL-------------ESKKIESP------ 46
QV D L +L + + +L E +P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSII 333
Query: 47 SAAIESETETNKQVDNQAETKKQLESEIETK-KQLESEAETKK----------------Q 89
+ +I T + +L + IE+ LE AE +K
Sbjct: 334 AESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTI 390
Query: 90 V------DSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQL-DSQAETKKQFDSQA 142
+ D V ++ V+ KQ E+ + E K + +++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPK---ESTISIPSIYLELKVKLENEY 443
Query: 143 ETKKQFDSQAETKKQFDSQAETKKQLD-----------SQAEMKKQFDSQAEAKKHLAQR 191
+ K FDS LD E ++
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-------FRMV 496
Query: 192 YDDF 195
+ DF
Sbjct: 497 FLDF 500
Score = 30.6 bits (68), Expect = 0.50
Identities = 36/262 (13%), Positives = 73/262 (27%), Gaps = 89/262 (33%)
Query: 9 VLDKLKHEEA--KFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAET 66
VL +++ +A FN+ KI L+ T KQV +
Sbjct: 249 VLLNVQNAKAWNAFNLSC-KI--LL----------------------TTRFKQVTDFLSA 283
Query: 67 KKQLESEIETKKQLESEAETK----KQVDSQ-------------------GETKKQVDSQ 103
++ + E K K +D + E+ + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 104 AESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQA-----------------ETKK 146
++ K V+ + + + L+ AE +K FD +
Sbjct: 344 WDNWKHVNCDKLTTI--IESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 147 QFDSQAETKKQFDSQAETKKQLDS--------QAEMKKQFDSQAEAKKHLAQRYDDFMKE 198
+ D K + +KQ E+K + +++ + + Y + K
Sbjct: 401 KSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKT 458
Query: 199 LDYKETSGTTI---------HH 211
D + + HH
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHH 480
Score = 27.5 bits (60), Expect = 4.8
Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 51/232 (21%)
Query: 4 MDTAQVLDKLKH----EEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQ 59
D V D K EE + S S + L SK+ E +E N
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-- 90
Query: 60 VDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVD 119
K L S I+T+++ + T+ ++ + + D+Q +K V ++ Q
Sbjct: 91 -------YKFLMSPIKTEQR-QPSMMTRMYIEQR--DRLYNDNQVFAKYNV---SRLQPY 137
Query: 120 SQAETK-KQLDSQ-----------------AETKKQFDSQAETKKQFDSQA---ETKKQF 158
+ +L + + + + + D + K
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY----KVQCKMDFKIFWLNLKNCN 193
Query: 159 DSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDD-------FMKELDYKE 203
+ + ++ + S+++ ++ R +K Y+
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 37.8 bits (88), Expect = 0.002
Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 3/129 (2%)
Query: 32 KKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQL--ESEAETKKQ 89
+ EI S + E + +E + ++ N L+ EI ++ +++ E K
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Query: 90 VDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKK-QF 148
+ + K + + K+ + K + + + + ETK+ +
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLEL 1070
Query: 149 DSQAETKKQ 157
D E +
Sbjct: 1071 DLNDERLRY 1079
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 36.5 bits (83), Expect = 0.006
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
Query: 51 ESETETNKQVDNQAETKKQLESEIETKKQLESEAE-TKKQVDSQGETKKQVDSQAESKKQ 109
+ + Q E E+ + + E+E + + D Q E + +++ E +
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG 67
Query: 110 VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLD 169
V ++ + E ++A + + + +A AE K + D + E K +
Sbjct: 68 VATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEAT 127
Query: 170 SQAEMKKQFDSQAEAKK 186
+Q + K + +K
Sbjct: 128 NQGDESKPAAEANKTEK 144
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 35.3 bits (81), Expect = 0.017
Identities = 25/189 (13%), Positives = 63/189 (33%), Gaps = 21/189 (11%)
Query: 29 SLIKKSEEILESKKIESPSAAIESET------ETNKQVDNQ-----------AETKKQLE 71
I + ++ K+ + + +T QV + +Q
Sbjct: 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958
Query: 72 SEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQ 131
+++ Q + AE K++ + + + V ++ + ++V A + ++ Q
Sbjct: 1959 QKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQ 2018
Query: 132 AETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQR 191
E + KQ + A S A K++ + +Q +++ K+ R
Sbjct: 2019 LENA----ANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074
Query: 192 YDDFMKELD 200
+ L+
Sbjct: 2075 SIALLDNLN 2083
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.038
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 31 IKKSEEILESK-KIESP-SA---AIESETE 55
+KK L++ K+ + SA AI++ E
Sbjct: 22 LKK----LQASLKLYADDSAPALAIKATME 47
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 33.6 bits (76), Expect = 0.050
Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 4/181 (2%)
Query: 14 KHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESE 73
+ E D + ++ + EI + + + + + + + + Q E+E
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
Query: 74 IETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAE---TKKQLDS 130
K+ LE EA V+S G K + +S+AE+ + + Q +A+ + + +
Sbjct: 701 KARKELLELEAM-SMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759
Query: 131 QAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQ 190
+ K + + Q + + +Q + K + ++A A A +
Sbjct: 760 ERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQV 819
Query: 191 R 191
+
Sbjct: 820 K 820
Score = 32.5 bits (73), Expect = 0.10
Identities = 17/141 (12%), Positives = 47/141 (33%), Gaps = 5/141 (3%)
Query: 51 ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQV 110
++ V + ++ ++ QL E T Q K + E + +
Sbjct: 631 NGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQE----AAAKHEAQRLEQEARG 686
Query: 111 DAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDS 170
E +K +D K + + ++ + ++++ + + Q
Sbjct: 687 RLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKL 746
Query: 171 QAEMKKQFDSQAEAKKHLAQR 191
+A+ +++AE ++ R
Sbjct: 747 KAQ-ALAIETEAELERVKKVR 766
Score = 32.1 bits (72), Expect = 0.17
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 16/174 (9%)
Query: 16 EEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIE 75
++A F + + S+ +S E ++ + ++ +++ E A + E E
Sbjct: 624 DQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQE 683
Query: 76 TKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQ---VDSQAETKKQLDSQA 132
+ +LE + + +AE ++ E + V+S K + +S+A
Sbjct: 684 ARGRLERQKILDQS-------------EAEKARKELLELEAMSMAVESTGNAKAEAESRA 730
Query: 133 ETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKK 186
E + + + + +QA + KK + + + +K
Sbjct: 731 EAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKA 784
Score = 31.3 bits (70), Expect = 0.24
Identities = 18/170 (10%), Positives = 48/170 (28%)
Query: 5 DTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQA 64
D Q +L E + ++ + +E + + E+E + ++ +A
Sbjct: 652 DALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA 711
Query: 65 ETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAET 124
+ + + + + + K + + + E K+V
Sbjct: 712 MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELI 771
Query: 125 KKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEM 174
+ + E K K+F E + + Q ++
Sbjct: 772 YARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 0.13
Identities = 20/141 (14%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 53 ETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGET-KKQVDSQAESKKQVD 111
+ E K + ++QLE E +++L+ E K D + + + + + ++
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLE---KVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 112 AETKKQVDSQAETKKQLDSQAE-----TKKQFDSQAETKKQFDSQAETKKQFDSQAETKK 166
E K + ++ L + E TK + ++ + + +K + K+
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Query: 167 QLDSQAEMKKQFDSQAEAKKH 187
+L+ ++ + ++ +A+
Sbjct: 1064 KLEGESSDLHEQIAELQAQIA 1084
Score = 29.0 bits (65), Expect = 1.5
Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 14/181 (7%)
Query: 5 DTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQA 64
++ K + + S ++ + E + E + E E++ + A
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077
Query: 65 ETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAET 124
E + Q+ + E E + ++ E + K++
Sbjct: 1078 ELQAQIAELKAQLAKKEEE-------------LQAALARLEDETSQKNNALKKIRELESH 1124
Query: 125 KKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEA 184
L E++K ++AE +K+ D E + +T +Q E++ +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKR-DLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Query: 185 K 185
K
Sbjct: 1184 K 1184
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 31.2 bits (71), Expect = 0.28
Identities = 10/142 (7%), Positives = 41/142 (28%), Gaps = 8/142 (5%)
Query: 65 ETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAET 124
+ + + K + QG+ ++ ++ E + + E
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEY 182
Query: 125 KKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQA--------ETKKQLDSQAEMKK 176
++ + + K + +++ + +T K + + +
Sbjct: 183 EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINN 242
Query: 177 QFDSQAEAKKHLAQRYDDFMKE 198
+ + +K + ++ K+
Sbjct: 243 ETEQLKAEEKKILNQFLKIKKK 264
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.42
Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 21/200 (10%)
Query: 14 KHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESE 73
K + +D + S ++ + + ++ A E T +Q + +
Sbjct: 7 KTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRAT 66
Query: 74 IETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAE 133
E+ + + V+ +E+K + D T+KQ ++K Q+
Sbjct: 67 -ESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDT 125
Query: 134 TKKQFDSQAETKKQ-FDSQAETKKQFDSQAETKKQLDSQAEMK----------------- 175
+ + + + + K AE + S+ +
Sbjct: 126 GINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHV 185
Query: 176 --KQFDSQAEAKKHLAQRYD 193
S + H+A
Sbjct: 186 CSAVLFSPLDLDAHVASHGL 205
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.2
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 47 SAAIESETETNKQVDNQAETKKQLES--EIETKKQLESEAETKKQVDSQ-GETKKQVDSQ 103
+ A E + E +K+L+ + E + KK ++ +QV+
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 104 AESKKQVDAETKKQVDSQA 122
+ + D +Q D+
Sbjct: 135 KINNRIADKAFYQQPDADI 153
Score = 28.2 bits (62), Expect = 2.0
Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 68 KQLESEIET-KKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKK 126
+L E E+ +K E + + +++D+ + +Q + + ++KK ++ ++Q + + K
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQ-EWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 127 Q-LDSQAETKKQFDSQA 142
+ +Q D+
Sbjct: 137 NNRIADKAFYQQPDADI 153
Score = 27.8 bits (61), Expect = 2.1
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 102 SQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQ 161
+QA+ Q +K + Q + ++LD+ ++ +Q + + + KK + ++ Q
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQ-EWREKAKKDLEEWN---QRQSEQ 130
Query: 162 AETKKQLDSQAEMKKQFDSQAEA 184
E K + A+ K F Q +A
Sbjct: 131 VEKNKINNRIAD--KAFYQQPDA 151
Score = 27.0 bits (59), Expect = 3.6
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 63 QAETKKQLESEIETKKQLES--EAETKKQVDSQGETKKQVDSQAES-KKQVDAETKKQVD 119
E + + E +K+L+ A + + + + KK ++ + +QV+
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 120 SQAETKKQLDSQA 132
+ +Q D+
Sbjct: 141 ADKAFYQQPDADI 153
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 27.9 bits (62), Expect = 2.8
Identities = 19/134 (14%), Positives = 42/134 (31%)
Query: 53 ETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDA 112
E N + A ++ E+E +E + QGE K + S ++ +
Sbjct: 102 EILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIIS 161
Query: 113 ETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQA 172
+ + ++ + +K L + + + S S + K+ + L
Sbjct: 162 DVFQSKETLEKLEKLLKEKMKKLENEISSGGAGGAGGSLEKKLKEMSDEYNNLDLLRKYL 221
Query: 173 EMKKQFDSQAEAKK 186
K F +
Sbjct: 222 FDKSNFSRYFTGRV 235
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 27.9 bits (61), Expect = 3.3
Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 1/145 (0%)
Query: 1 MDGMDTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIE-SETETNKQ 59
MD D V ++ E + D+ + + + + KK E E + +
Sbjct: 36 MDSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENK 95
Query: 60 VDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVD 119
++K + +++ L E + + + ++ QV
Sbjct: 96 KIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVR 155
Query: 120 SQAETKKQLDSQAETKKQFDSQAET 144
Q D + + ++A T
Sbjct: 156 HQVALPPNYDYTPIAEHKRVNEART 180
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid,
ATP-binding, cytoplasm, nucleotide-binding, transferase,
lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A*
3a7a_A* 1x2g_A*
Length = 337
Score = 27.1 bits (60), Expect = 4.6
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 20 FNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQ 79
N D ++ + + ++ L +K I S + + + TE + ++ + + +
Sbjct: 154 LNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHE-QVCEAITEAFFAHYG 212
Query: 80 LESEAET 86
EAE
Sbjct: 213 ERVEAEI 219
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 27.0 bits (58), Expect = 5.7
Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 1/130 (0%)
Query: 57 NKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKK 116
NKQ+ K + E + + + + ++ + QAE K +
Sbjct: 573 NKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSL 632
Query: 117 QVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKK 176
Q+D A+ + Q A + + + KQ + + K Q + + + AE+
Sbjct: 633 QID-AAKVEAQNQLNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDRSEDARANAELLL 691
Query: 177 QFDSQAEAKK 186
+ D Q ++
Sbjct: 692 KGDEQTHKQR 701
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.298 0.115 0.281
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,706,838
Number of extensions: 135968
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 122
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.6 bits)