BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7538
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 44 KVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLRGKSILQKIQVI 103
+ L+ ++LR ++ L+R + + +R+E+ F+S + L+ + + +++V+
Sbjct: 87 RYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK-ELAADRLEVV 145
Query: 104 SGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTRGTRDMLELSKQM 163
+GD ++ LG+ + + L + VD++ AA + P N GT +++ ++
Sbjct: 146 AGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNA-FPYHELFGPNVAGTAELIRIALTT 204
Query: 164 KNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDLEVFR--QDILGEF 221
K LK FTY+STA D I + ++ D+ V + + G +
Sbjct: 205 K-LKPFTYVSTA------------------DVGAAIEPSAFTEDADIRVISPTRTVDGGW 245
Query: 222 PNSYAYTKCLAEGLVAECMEL-GMPCMILR 250
Y +K E L+ E +L +P + R
Sbjct: 246 AGGYGTSKWAGEVLLREANDLCALPVAVFR 275
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 106 DITQLKLGISEIDKKELIDNVDIVYHVAAT----IRFDEPIKTAVILNTRGTRDMLELSK 161
D +L+ I+E +IV+H+AA + +++PIKT N GT +LE K
Sbjct: 68 DFEKLRSSIAEFKP-------EIVFHMAAQPLVRLSYEQPIKTYST-NVMGTVHLLETVK 119
Query: 162 QMKNLKCFTYISTAYCH 178
Q+ N+K I++ C+
Sbjct: 120 QVGNIKAVVNITSDKCY 136
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 103 ISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVIL---NTRGTRDMLEL 159
+ GD+ +L KEL+ VD V H+AA D I + I N GT +LE
Sbjct: 59 VKGDVADYEL------VKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLES 112
Query: 160 SKQMKNLKCFTYIST--AYCHPSEKVLEERTYLPPDDPHQVILRAESM 205
++ F ++ST Y + E L P P+ A M
Sbjct: 113 IRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDM 160
>pdb|1MKF|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1MKF|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1ML0|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The P8a Variant Of
Cc-Chemokine Mcp-1
pdb|2NYZ|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NYZ|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NZ1|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|X Chain X, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
Length = 382
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 299 PADVAINGVFLFTWDFLNSKESERKSVCNLTSNKDYKITWQEICDIGKDIVTSKIPFNST 358
PA+ + D L+ E + +CN+ NK + W + ++G++I+T ++PF S
Sbjct: 39 PAETEVTECAGILKDVLSKNLHELQGLCNV-KNK-MGVPWVSVEELGQEIITGRLPFPSV 96
Query: 359 LWYPGGT 365
GGT
Sbjct: 97 ----GGT 99
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 145 AVILNTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVIL 200
A+I +G+R+ EL K+ LK + + + +P + + RT+ DDP +++
Sbjct: 27 AIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPRTWYEDDDPFDIMV 82
>pdb|3E9N|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
Length = 245
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 97 LQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTRGTRDM 156
++ ++ I DI + L +DK + +D+VD + H AA R D I+ + D+
Sbjct: 47 IEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVHAAAVAR-DTTIEAGSVAEWHAHLDL 105
Query: 157 -----LELSKQM-----KNLKCFTYISTAYC---HPSEKV 183
ELS+Q+ C YI++ HP +
Sbjct: 106 NVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHPGNTI 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,575,702
Number of Sequences: 62578
Number of extensions: 654255
Number of successful extensions: 1432
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 15
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)