RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7538
(543 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 192 bits (489), Expect = 3e-55
Identities = 65/358 (18%), Positives = 139/358 (38%), Gaps = 34/358 (9%)
Query: 14 PKELQALPDRIAKTYENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPN 73
L + + E +++ L+G +GFLG+ L+ ++LR ++ L+R + +
Sbjct: 57 ADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR 116
Query: 74 QRVEELFESPVFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVA 133
+R+E+ F+S + L+ + + +++V++GD ++ LG+ + + L + VD++ A
Sbjct: 117 RRLEKTFDSGDPELLRHFK-ELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSA 175
Query: 134 ATIRFDEPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPD 193
A + + N GT +++ ++ K LK FTY+STA + E + D
Sbjct: 176 AMVNAFPYHELFGP-NVAGTAELIRIALTTK-LKPFTYVSTADVGAA----IEPSAFTED 229
Query: 194 DPHQVILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPS 252
+VI + G + Y +K E L+ E +L +P + R
Sbjct: 230 ADIRVISPTR------------TVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCG 277
Query: 253 IVVPIYKEPLPGWTDNINGPTGLLIGA--------GKGVIRSMYCKNTGMADFLPADVAI 304
+++ G + + T +++ S + D LP
Sbjct: 278 MILADTSY--AGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVA 335
Query: 305 NGVFLFTWDFLNSKESERKSVCNLTSNKDYKITWQEICDIGKDIVTSKIPFNSTLWYP 362
+ + S + ++ + D I E D ++ + P +
Sbjct: 336 EAIAVLGARVAGSSLAGFA-TYHVMNPHDDGIGLDEYVDW---LIEAGYPIRRIDDFA 389
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 75.8 bits (187), Expect = 4e-15
Identities = 36/262 (13%), Positives = 66/262 (25%), Gaps = 70/262 (26%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLR 92
+ G +G LG I ++ L+ R P+ +++ L
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLV---LIHR------PSSQIQRLAYLEP-------- 58
Query: 93 GKSILQKIQVISGDITQLKLGISEIDK---KELIDNVDIVYHVAATIRFDEPIKTAVI-L 148
+ ++ D + + +D V A +
Sbjct: 59 --------ECRVAEML---------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVAS 101
Query: 149 NTRGTRDMLELSKQMKNLKCFTYISTA---YCHPSEKVLEERTYLPPDDPHQVILRAESM 205
T Q + + Y+ +A HP E +
Sbjct: 102 ALGQTNPFYAACLQAR-VPRILYVGSAYAMPRHPQGLPGHEGLFYDSLP----------- 149
Query: 206 KEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMELGMPCMILRPSIVV-PIYKEPLPG 264
+SY K + E G+P +I P +V+ + P G
Sbjct: 150 --------------SGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGPTTG 195
Query: 265 --WTDNINGPTGLLIGAGKGVI 284
T NG + + VI
Sbjct: 196 RVITAIGNGEMTHYVAGQRNVI 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.7 bits (167), Expect = 3e-12
Identities = 66/518 (12%), Positives = 150/518 (28%), Gaps = 127/518 (24%)
Query: 7 APDLVTIPKELQALPDRIAKTYENKSIFLSGGSGFLGK-VLIEKILRLEPNVKKIYLLMR 65
A V+ + L + + K++ + G G GK + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCL------------- 172
Query: 66 TKKGKTPNQRVEELFESPVF--DALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELI 123
+ +V+ + +F + +++L+ +Q + I S+ +
Sbjct: 173 -------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IK 224
Query: 124 DNVDIVYHVAATIRFDEPIKTA-VILNTRGTRDMLELSKQMK--NLKCFTYISTAYCHPS 180
+ + + +P + ++L ++ +K NL C ++T + +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVL--LNVQN----AKAWNAFNLSCKILLTTRFKQVT 278
Query: 181 EKVLEERTYLPPDDPHQVILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECM 240
+ + T D H + L +E + + Y C + L E +
Sbjct: 279 DFLSAATTTHISLDHHSMTL----TPDEVKSLLLK-----------YLDCRPQDLPRE-V 322
Query: 241 ELGMPCMILRPSIVVPIYKEPLPGW-------TDNINGPTGLLIGAGK-GVIRSMYCKNT 292
P + SI+ ++ L W D + + + R M+ +
Sbjct: 323 LTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-- 377
Query: 293 GMADFLPADVAI-NGVFLFTWDFLNSKESE-------RKSVCNLTSNK----------DY 334
++ F P I + W + + + S+ + +
Sbjct: 378 -LSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 335 KITWQEICDIGKDIVTSKIPFNSTLWYPGGTMTQSRLTHFICCLLFHWIPAYFLDAVILI 394
K+ + + + IV +N + + L + + I + L +
Sbjct: 436 KVKLENEYALHRSIVDH---YNIPKTFDSDDLIPPYLDQYF----YSHI-GHHLKNI--- 484
Query: 395 SGNKPCLVRIQERIHRGFDVFE-YYANNEW-EFKNGNLHQTRPKRNAREIV--------- 443
E R +F + + + E K + NA +
Sbjct: 485 -----------EHPER-MTLFRMVFLDFRFLEQK---IRHDSTAWNASGSILNTLQQLKF 529
Query: 444 --QYCVENDNVDIVKYFEKAVYGARYFLMKESPESLES 479
Y +ND +E+ V FL K + S
Sbjct: 530 YKPYICDNDP-----KYERLVNAILDFLPKIEENLICS 562
Score = 62.2 bits (150), Expect = 3e-10
Identities = 75/609 (12%), Positives = 146/609 (23%), Gaps = 216/609 (35%)
Query: 15 KELQALPDRIAKTYENKSIFLSGGSG----FLGKVLIEKILRLEPNVKKIYLLMRTKKGK 70
+ D ++ T LS F+ +VL N Y + +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-------RIN----YKFLMSPIKT 100
Query: 71 TPNQR--VEELFESPVFDALKTLRGKSILQKIQVISGD-ITQLKLGISEIDKKELIDNVD 127
Q + ++ D + + K V +L+ + EL +
Sbjct: 101 EQRQPSMMTRMYIEQR-D--RLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKN 152
Query: 128 IVYH----------VAATIRFDEPIKTAV---I--LNTRGTRDMLELSKQMKNLKCFTYI 172
++ ++ + I LN + + + ++ L
Sbjct: 153 VLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------ 205
Query: 173 STAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLA 232
+ + R D + LR S++ E + + Y CL
Sbjct: 206 ----LYQIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLKSK---------PYENCL- 247
Query: 233 EGLVAECMELGMPCMILRPSIVVPIYKEPLPGWTDNINGPTGLLIGAGKGVIRSM--YCK 290
++L N+ + CK
Sbjct: 248 --------------LVL-----------------LNVQNAK---------AWNAFNLSCK 267
Query: 291 ------NTGMADFLPADVAINGVFL------FTWD--------FLNSKESE-RKSVCNL- 328
+ DFL A + + L T D +L+ + + + V
Sbjct: 268 ILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 329 --------TSNKDYKITWQEICDIGKDIVTSKIPFNSTLWYPGGTMTQSRLTHFICCLLF 380
S +D TW + D +T+ I +S + L
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTII--------------ES----SLNVLEP 368
Query: 381 HWIPAYFLDAVILISGNKPCLVRIQERIHRGFDVFEYYANNEWEFKNGNLHQTRPKRNAR 440
F + P I + W K +
Sbjct: 369 AEYRKMFDRLSVF-----PPSAHIPT------ILLSLI----WFDV--------IKSDVM 405
Query: 441 EIVQYC-----VENDNVDIVKYFEKAVYGARYFLMKESPESLESARKKMKVMYALHITAR 495
+V VE K ++ Y +K E+ + + + Y + T
Sbjct: 406 VVVNKLHKYSLVEKQP----KESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 496 CIFLAL------FLWFLSNNFH---------------VFLKLGLFVRGLASLVFSSSADS 534
L F + H VFL F+ + S+A +
Sbjct: 461 SDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFR-FLE--QKIRHDSTAWN 515
Query: 535 TTSRVMTDL 543
+ ++ L
Sbjct: 516 ASGSILNTL 524
Score = 52.9 bits (126), Expect = 2e-07
Identities = 73/482 (15%), Positives = 142/482 (29%), Gaps = 171/482 (35%)
Query: 154 RDMLELSKQ--MKNLKCF-------TYISTAYCHPSEKVLEERTYLPPDDPHQV-----I 199
+D+L + + + N C + +S + ++ D
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMS-----KDAVSGTLRLFWT 70
Query: 200 LRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMELGMPCMILRPSIVVPIYK 259
L ++ +EE ++ F +++L N Y + L + E + PS++ +Y
Sbjct: 71 LLSK--QEEMVQKFVEEVLR--IN-YKF---LMSPIKTEQRQ---------PSMMTRMYI 113
Query: 260 EPL-PGWTD-------NINGP-------TGLL-------------IGAGKGVIRSMYCKN 291
E + D N++ LL +G+GK + C +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 292 TGMADFLPADVAINGVFLFTWDFLNSKESER-KSVCNLTSNKDYKIT--WQEICDIGKDI 348
+ + +F W LN K ++V + Y+I W D +I
Sbjct: 174 YKVQCKMD-----FKIF---W--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 349 VTSKIPFNSTLWYPGGTMTQSRLTHFIC------CLLFHWIPAYFLDAV----------- 391
K+ +S Q+ L + CLL + L V
Sbjct: 224 ---KLRIHS---------IQAELRRLLKSKPYENCLL---V----LLNVQNAKAWNAFNL 264
Query: 392 ---ILI-----------SGNKPCLVRIQERIHRGF------DVFEYYANNEWEFKNGNLH 431
IL+ S + + + + Y + + +L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDC----RPQDL- 318
Query: 432 QTRPKRNAREI----VQYCVEN--DNVDIVKYFEKAVYGARYFLMKESPESLESARKKMK 485
P R + E+ D + ++ +++ S LE A + +
Sbjct: 319 ---P-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYR 372
Query: 486 VMY-AL-------HITAR--CIFLALFLWFLSNNFHVFLKLGLFVRGLASLVFSSSADST 535
M+ L HI + +WF V + + + SLV +ST
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSL-----IWFDVIKSDVMVVVNKLHK--YSLVEKQPKEST 425
Query: 536 TS 537
S
Sbjct: 426 IS 427
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 64.7 bits (158), Expect = 2e-11
Identities = 41/238 (17%), Positives = 70/238 (29%), Gaps = 65/238 (27%)
Query: 25 AKTYENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPV 84
A N ++ + GG+GF+G L++++L L N +V V
Sbjct: 27 ASKLANTNVMVVGGAGFVGSNLVKRLLELGVN------------------QVH------V 62
Query: 85 FDALKTLRGKSILQ--KIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA---TIRF- 138
D L + ++ ++ IT L L D D V+H+A
Sbjct: 63 VDNLLSAEKINVPDHPAVRFSETSITDDAL------LASLQDEYDYVFHLATYHGNQSSI 116
Query: 139 DEPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPH 196
+P+ NT T + E K K LK Y + + + H
Sbjct: 117 HDPLADHEN-NTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLH 175
Query: 197 QVILRAESMKEEDLEVFRQDILGEFPNS-YAYTKCLAEGLVAECMEL-GMPCMILRPS 252
+S Y+ +K E + +P + R
Sbjct: 176 N------------------------NDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQ 209
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 55.4 bits (134), Expect = 1e-08
Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 71/243 (29%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
K + ++G +G LG+V+ E++ + + L
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEIL--------------------------RLADLSP 37
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNT 150
L + + D+ ++ D + H+ I ++P + + N
Sbjct: 38 LD--PAGPNEECVQCDLADANAV------NAMVAGCDGIVHLGG-ISVEKPFEQILQGNI 88
Query: 151 RGTRDMLELSKQMKNLKCFTYIST--AY-CHPSEKVLEERTYLPPDDPHQVILRAESMKE 207
G ++ E ++ + S+ +P + L PD
Sbjct: 89 IGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQTERLGPDVPARPDGL------------ 135
Query: 208 EDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIVVPIYKEP--LPG 264
Y +KC E L + G ++R P L
Sbjct: 136 -----------------YGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLST 178
Query: 265 WTD 267
W
Sbjct: 179 WFS 181
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 52.7 bits (127), Expect = 8e-08
Identities = 27/241 (11%), Positives = 70/241 (29%), Gaps = 71/241 (29%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
+ ++G +G +G + + L V+ + D +
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVR-------------------------LSDIVDL 37
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNT 150
++ + +++ D+ + +L+ + D + H+ + + P + N
Sbjct: 38 GAAEAHEE---IVACDLADAQ------AVHDLVKDCDGIIHLGG-VSVERPWNDILQANI 87
Query: 151 RGTRDMLELSKQMKNLKCFTYISTA---YCHPSEKVLEERTYLPPDDPHQVILRAESMKE 207
G ++ E ++ + S+ +P ++ PD
Sbjct: 88 IGAYNLYEAARN-LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSL------------ 134
Query: 208 EDLEVFRQDILGEFPNSYAYTKCLAEGLVAE-CMELGMPCMILRPSIVVPIYKEP--LPG 264
Y +KC E L + + + + +R P K+ +
Sbjct: 135 -----------------YGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKDARMMAT 177
Query: 265 W 265
W
Sbjct: 178 W 178
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 52.2 bits (126), Expect = 2e-07
Identities = 36/226 (15%), Positives = 62/226 (27%), Gaps = 69/226 (30%)
Query: 30 NKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALK 89
+ I ++GG+GFLG+ ++E I +
Sbjct: 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPI-------------------------ILTRSI 36
Query: 90 TLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILN 149
+ + + D T D +++VD V H+AAT I N
Sbjct: 37 GNK---AINDYEYRVSDYTLE-------DLINQLNDVDAVVHLAATRGSQGKISEFHD-N 85
Query: 150 TRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTY-LPPDDPHQVILRAESMKEE 208
T+++ + + N+ Y ST Y P E
Sbjct: 86 EILTQNLYDACYE-NNISNIVYASTISA-----------YSDETSLP----------WNE 123
Query: 209 DLEVFRQDILGEFPNS-YAYTKCLAEGLVAECMEL-GMPCMILRPS 252
P+ Y +K E + G+ LR +
Sbjct: 124 KELP--------LPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 3e-07
Identities = 77/442 (17%), Positives = 135/442 (30%), Gaps = 155/442 (35%)
Query: 17 LQALPDRIAKTYENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRV 76
+A+ + A+ +IF GG G E LR +Y +T + V
Sbjct: 146 FRAVGEGNAQLV---AIF--GGQGNTDDYFEE--LR------DLY--------QTYHVLV 184
Query: 77 EELFE--------------------SPVFDALKTLRGKS------ILQKIQV---ISGDI 107
+L + + + L+ L S L I + + G +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-V 243
Query: 108 TQL--------KLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTRGTRD-MLE 158
QL LG + EL ++ + + TAV + + +
Sbjct: 244 IQLAHYVVTAKLLGFT---PGELRS------YLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 159 LSKQMKNLKCFTYISTAYCH---PSEKVLEERTYLPPDDPHQVI----------LRAESM 205
++ + +I C+ P T LPP + L ++
Sbjct: 295 SVRKA--ITVLFFIGVR-CYEAYP-------NTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 206 KEEDLEVFRQDILGEFPNSY-AYTKCLAEGLV--AECMEL-GMP------CMILR----P 251
+E + QD + + NS+ K + LV A+ + + G P + LR P
Sbjct: 345 TQEQV----QDYVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 252 SIV----VPIYKEP-------LPGWTDNINGP--TGLLIGAGKGVIRSMYCKNTGMADFL 298
S + +P + LP + P + LL+ A + + + N F
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLP-----VASPFHSHLLVPASDLINKDLVKNN---VSFN 451
Query: 299 PADVAINGVFL-FTW-DFLNSKESERKSVCNLTSNKDYKIT-----WQEICDIGKDIVTS 351
D+ I V+ F D S + + + I W+ T
Sbjct: 452 AKDIQIP-VYDTFDGSDLRVLSGSISERIVDC-------IIRLPVKWETTTQFK---ATH 500
Query: 352 KIPFNSTLWYPGGTMTQSRLTH 373
+ F PGG LTH
Sbjct: 501 ILDFG-----PGGASGLGVLTH 517
Score = 43.5 bits (102), Expect = 2e-04
Identities = 71/443 (16%), Positives = 123/443 (27%), Gaps = 186/443 (41%)
Query: 139 DEPIKTAVILNTRGTRDMLELSKQMKNLKCF-TYISTAYCHPSEK-----VLE------E 186
DEP EL + F Y+S+ PS+ VL E
Sbjct: 52 DEPT------------TPAELVGK------FLGYVSS-LVEPSKVGQFDQVLNLCLTEFE 92
Query: 187 RTYLPPDDPHQVILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMELGMPC 246
YL +D H + + + L ++++ +Y T +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVK-TKELI----KNY-ITARIMAK------------ 134
Query: 247 MILRPSIVVPIYKEPLPGWTDNIN-GPTGL--LIGAGKGVI-------RSMYCK-NTGMA 295
P K+ + G L + G G+G R +Y + +
Sbjct: 135 --------RPFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVG 185
Query: 296 DFL-------------PADVAI---NGVFLFTWDFLNSKESERKSVCNLTSNKDYKITWQ 339
D + D G+ + W L + + T +KDY ++
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPSN--------TPDKDYLLS-- 233
Query: 340 EICDIGKDIVTSKIPFNSTLWYPGGTMTQSRLTHF-ICCLLFHWIPAYFLDAVILISGNK 398
IP S P + Q L H+ + L + P + +G+
Sbjct: 234 -------------IPI-S---CPLIGVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 399 PCLVR---IQERIHRGFDVFEYYANNEWE--FKNGNL------------HQTRPKRNAR- 440
LV I + WE F + ++ P +
Sbjct: 275 QGLVTAVAIA-------------ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 441 EIVQYCVENDN--------V---------DIVKYF------EKAVY-----GARYFLMKE 472
I++ +EN+ + D V K V GA+ ++
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 473 SPESLESARKKMKVMYALHITAR 495
P+SL Y L++T R
Sbjct: 382 PPQSL----------YGLNLTLR 394
Score = 42.0 bits (98), Expect = 5e-04
Identities = 33/215 (15%), Positives = 70/215 (32%), Gaps = 67/215 (31%)
Query: 112 LGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTR------G-TRDMLELSKQMK 164
L IS + ++++ D V+ + + + ++ +++ N G + + L+ ++
Sbjct: 339 LSISNLTQEQVQDYVN---KTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGLNLTLR 394
Query: 165 NLKCFTYISTAYC-HPSEKVLEERTYLPPDDP-HQVILR-AESMKEEDLEVFRQDILGEF 221
K + + + K+ +LP P H +L A + +DL + ++ F
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV--KNNV--SF 450
Query: 222 PNSYAYTKCLAEGLVAECMELGMP-------------CMILRPSIVVPIYKEPLPGWTDN 268
++ +P + IV I + P+ W
Sbjct: 451 NAK----------------DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV-KWETT 493
Query: 269 IN---------GP-----TGLLI-----GAGKGVI 284
GP G+L G G VI
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 42.0 bits (98), Expect = 5e-04
Identities = 46/290 (15%), Positives = 84/290 (28%), Gaps = 124/290 (42%)
Query: 28 YEN----KSIF------LSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVE 77
Y+ + ++ GF I I+ P + + +KG +R+
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFS----ILDIVINNP--VNLTIHFGGEKG----KRIR 1685
Query: 78 ELFESPVFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR 137
E + + +F+ + GK +KI EI++ + +
Sbjct: 1686 ENYSAMIFET--IVDGKLKTEKI-------------FKEINEH------------STSYT 1718
Query: 138 FDEPIKTAVILN-TRGTRDMLELSKQ--MKNLKCFTYISTAYCHPSEKVLEERTYLPPDD 194
F +L+ T+ T Q + + A + L+ + +P D
Sbjct: 1719 FRSE---KGLLSATQFT--------QPAL-----TL-MEKAAF----EDLKSKGLIPADA 1757
Query: 195 P---HQVILRAESMKEEDLEVFRQDILGEFPNSYAYT--KCLAE--------------G- 234
H S LGE Y LA+ G
Sbjct: 1758 TFAGH-------S-------------LGE------YAALASLADVMSIESLVEVVFYRGM 1791
Query: 235 LVAECM---ELGMPC--MI-LRPS-IVVPIYKEPLPGWTDNINGPTGLLI 277
+ + ELG MI + P + +E L + + TG L+
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Score = 28.5 bits (63), Expect = 7.1
Identities = 16/133 (12%), Positives = 52/133 (39%), Gaps = 34/133 (25%)
Query: 35 LSGGSGFLGKVLIEKILRLEPNVKK----IYLLM-RTKKGKT--------PNQRVEELFE 81
L+ + + IE ++ + V + + + R + G++ P + +
Sbjct: 1770 LASLADVMS---IESLVEV---VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 82 SPVFDALKTLRGKS--ILQKI--------Q-VISGDITQLKLGISEIDKKELIDNVDIVY 130
+ ++ + ++ +++ I Q V +GD+ L ++ + + +DI+
Sbjct: 1824 EALQYVVERVGKRTGWLVE-IVNYNVENQQYVAAGDLRALDT-VTNVLNFIKLQKIDII- 1880
Query: 131 HVAATIRFDEPIK 143
+ ++ E ++
Sbjct: 1881 ELQKSLSL-EEVE 1892
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 50.2 bits (121), Expect = 6e-07
Identities = 28/194 (14%), Positives = 56/194 (28%), Gaps = 55/194 (28%)
Query: 84 VFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR----FD 139
V D L + + + + +++ D+ + K+ + + V+H+AA +
Sbjct: 29 VIDNLSSGNEEFVNEAARLVKADLAADDI-------KDYLKGAEEVWHIAANPDVRIGAE 81
Query: 140 EPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPHQ 197
P + N T +LE ++ + + ST+ Y E D P
Sbjct: 82 NPDEIYRN-NVLATYRLLEAMRK-AGVSRIVFTSTSTVYGEAKVIPTPE------DYPTH 133
Query: 198 VILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILR------ 250
I + Y +K E L+ M I R
Sbjct: 134 PI-----------------------SLYGASKLACEALIESYCHTFDMQAWIYRFANVIG 170
Query: 251 ----PSIVVPIYKE 260
++ +
Sbjct: 171 RRSTHGVIYDFIMK 184
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 47.9 bits (114), Expect = 2e-06
Identities = 41/237 (17%), Positives = 68/237 (28%), Gaps = 74/237 (31%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
+NKS+F+ G SG G+VL+++IL + K+ L+ R K
Sbjct: 17 QNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEA-------------- 61
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVIL 148
+ + D +L D D+ + T R + V +
Sbjct: 62 --------YKNVNQEVVDFEKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRV 107
Query: 149 NTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEE 208
+ EL+K K F +S+ S
Sbjct: 108 DRDYVLKSAELAKAG-GCKHFNLLSSKGADKS---------------------------- 138
Query: 209 DLEVFRQDILGEFPNSYAYTKCLAEGLVAECMELGMP-CMILRPSIVVPIYKEPLPG 264
Y K E A+ EL + RP +++ +E PG
Sbjct: 139 ------------SNFLYLQVKGEVE---AKVEELKFDRYSVFRPGVLLCDRQESRPG 180
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 48.2 bits (115), Expect = 4e-06
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 39/160 (24%)
Query: 21 PDRIAKTYENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLL-MRTKKGKTPNQRVEEL 79
+ + + K + + G +GF+G L ++IL ++ + M+T R+ +L
Sbjct: 15 QTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWE--VFGMDMQTD-------RLGDL 65
Query: 80 FESPVFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA----- 134
+ GDIT K + + + D++ + A
Sbjct: 66 VKHERM---------------HFFEGDITINKEWV-----EYHVKKCDVILPLVAIATPA 105
Query: 135 TIRFDEPIKTAVILNTRGTRDMLELSKQMKNLKCFTYIST 174
T P++ L+ ++ + + K + ST
Sbjct: 106 TYVKQ-PLRV-FELDFEANLPIVRSAVKYG--KHLVFPST 141
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 46.0 bits (110), Expect = 2e-05
Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 46/174 (26%)
Query: 84 VFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR----FD 139
V D L + R + + ++ D+ + I D+V+H AA
Sbjct: 29 VVDNLSSGRREFVNPSAELHVRDLK-------DYSWGAGIK-GDVVFHFAANPEVRLSTT 80
Query: 140 EPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPHQ 197
EPI N T ++LE ++Q ++ + S++ Y E ++P++
Sbjct: 81 EPIVHFNE-NVVATFNVLEWARQ-TGVRTVVFASSSTVYGDADVIPTPE------EEPYK 132
Query: 198 VILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILR 250
I + Y K E + A L G+ C+ +R
Sbjct: 133 PI-----------------------SVYGAAKAAGEVMCATYARLFGVRCLAVR 163
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 45.8 bits (109), Expect = 2e-05
Identities = 27/173 (15%), Positives = 68/173 (39%), Gaps = 28/173 (16%)
Query: 9 DLVTIPKELQALPDRIAKTYENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKK 68
D +++ A + + GG+G +G+ + ++I + P +K++++
Sbjct: 14 DTELFHQDINANEKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVV----- 66
Query: 69 GKTPNQRVEELFESPVFDALKTLRGK--SILQKIQVISGDITQLKLGISEIDKKELIDNV 126
++ E+ + + ++ +R I Q + DI ++ + I
Sbjct: 67 ---------DISENNMVELVRDIRSSFGYINGDFQTFALDIGSIEY-DAFIKADG---QY 113
Query: 127 DIVYHVAAT--IRFDEPIKT---AVILNTRGTRDMLELSKQMKNLKCFTYIST 174
D V +++A +R ++ T + +N T ++ S K + +ST
Sbjct: 114 DYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDA-GAKKYFCVST 165
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 45.4 bits (108), Expect = 3e-05
Identities = 37/259 (14%), Positives = 65/259 (25%), Gaps = 85/259 (32%)
Query: 37 GGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLRGKSI 96
G SG +G L+ + I + T
Sbjct: 6 GSSGQIGTELVPYLAEKYGKKNVIASDIVQ--RDTGG----------------------- 40
Query: 97 LQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRF---DEPIKTAVILNTRGT 153
I+ I+ D++ I +K ++D ++H+A + +P + N GT
Sbjct: 41 ---IKFITLDVSNRDE-IDRAVEKY---SIDAIFHLAGILSAKGEKDPALAYKV-NMNGT 92
Query: 154 RDMLELSKQMKNLKCFTYISTA---YCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDL 210
++LE +KQ ++ ST + + T P
Sbjct: 93 YNILEAAKQ-HRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTM--------------- 136
Query: 211 EVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIVVPIYKEPLPGWTDNI 269
+ TK AE L E G+ LR I
Sbjct: 137 --------------FGVTKIAAELLGQYYYEKFGLDVRSLRYP---------------GI 167
Query: 270 NGPTGLLIGAGKGVIRSMY 288
++
Sbjct: 168 ISYKAEPTAGTTDYAVEIF 186
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 45.2 bits (107), Expect = 3e-05
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 28 YENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDA 87
++ K +F++G +GF G L + + VK L P+ LFE+
Sbjct: 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL----TAPTVPS-----LFET----- 52
Query: 88 LKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA----TIRFDEPIK 143
+ +Q GDI + I + + +IV+H+AA + + EP++
Sbjct: 53 ------ARVADGMQSEIGDIRDQNKLLESIREFQ----PEIVFHMAAQPLVRLSYSEPVE 102
Query: 144 TAVILNTRGTRDMLELSKQMKNLKCFTYISTAYCH 178
T N GT +LE + + +K I++ C+
Sbjct: 103 T-YSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCY 136
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 44.5 bits (105), Expect = 6e-05
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 120 KELIDNVDIVYHVAATIRFDEPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTAYCHP 179
+ + D + H+A R + + ++ N +L++ + S+
Sbjct: 41 ESALLKADFIVHLAGVNRPEHDKEFSLG-NVSYLDHVLDILTRNTKKPAILLSSSIQATQ 99
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 43.8 bits (104), Expect = 1e-04
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 59/234 (25%)
Query: 24 IAKTYENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYL--LMRTKKGKTPNQRVEELFE 81
I EN++I ++GG+GF+G L P K + L F+
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFK 63
Query: 82 SPVFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA----TIR 137
+ + K +VI+ DI ++ + D ++H AA T+
Sbjct: 64 NLIGF------------KGEVIAADINNP-----LDLRRLEKLHFDYLFHQAAVSDTTML 106
Query: 138 FDEPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQ 197
N + ++LE+++ K K Y S+A Y P
Sbjct: 107 --NQELVMKT-NYQAFLNLLEIARS-KKAK-VIYASSA----G-------VYGNTKAP-- 148
Query: 198 VILRAESMKEEDLEVFRQDILGEFPNS-YAYTKCLAEGLVAECMELGMPCMILR 250
E P + Y ++K + + LR
Sbjct: 149 --------NVVGKN--------ESPENVYGFSKLCMD-EFVLSHSNDNVQVGLR 185
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 43.1 bits (102), Expect = 1e-04
Identities = 33/247 (13%), Positives = 78/247 (31%), Gaps = 67/247 (27%)
Query: 37 GGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLRGKSI 96
G +G +G+ L ++++ K G + VE+ + D +
Sbjct: 21 GAAGMVGRKLTQRLV---------------KDGSLGGKPVEKFT---LIDVFQPEAPAGF 62
Query: 97 LQKIQVISGDITQLKLGISEIDKKELIDN-VDIVYHVAATI---RFDEPIKTAVILNTRG 152
+ + D++ ++L++ D+++H+AA + + K I N G
Sbjct: 63 SGAVDARAADLSAPGEA------EKLVEARPDVIFHLAAIVSGEAELDFDKGYRI-NLDG 115
Query: 153 TRDMLELSKQMKNLKC----FTYISTA--YCHPSEKVLEERTYLPPDDPHQVILRAESMK 206
TR + + + + S+ + P + + + P
Sbjct: 116 TRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPL------------- 162
Query: 207 EEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILR-PSIVVPIYKEPLPG 264
SY K + E L+++ + +R P+I + +P
Sbjct: 163 ----------------TSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRP-GKPNAA 205
Query: 265 WTDNING 271
+ +
Sbjct: 206 ASGFFSN 212
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 43.2 bits (102), Expect = 2e-04
Identities = 35/244 (14%), Positives = 69/244 (28%), Gaps = 35/244 (14%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
+ + GG G+ G + + V + L+R +E L
Sbjct: 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLG--LESLTPIASIHDR 67
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDE-------P 141
+ + I++ GDI + ++E K D V H
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEF-LAESFKSFEPD---SVVHFGEQRSAPYSMIDRSRA 123
Query: 142 IKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPHQVI 199
+ T N GT ++L K+ + T Y P+ + E + + +
Sbjct: 124 VYTQHN-NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTL 182
Query: 200 LRAESMKEEDLEVFRQDILGEFPNS-YAYTKCLAEGLVAECMEL-GMPCMILRPSIVVPI 257
+ +S Y +K +A + G+ L +V +
Sbjct: 183 PYPKQ-----------------ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 225
Query: 258 YKEP 261
+
Sbjct: 226 KTDE 229
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 42.3 bits (100), Expect = 3e-04
Identities = 51/236 (21%), Positives = 78/236 (33%), Gaps = 70/236 (29%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEEL--FESPVFD 86
+ K ++G +GF+G L+E +L+L +Q+V L F +
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLKL-------------------DQKVVGLDNFATGHQR 66
Query: 87 ALKTLRGKSILQ---KIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR----FD 139
L +R + + I GDI L VD V H AA +
Sbjct: 67 NLDEVRSLVSEKQWSNFKFIQGDIRNLDD------CNNACAGVDYVLHQAALGSVPRSIN 120
Query: 140 EPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPHQ 197
+PI + N G +ML ++ ++ FTY +++ Y LP
Sbjct: 121 DPITSNAT-NIDGFLNMLIAARD-AKVQSFTYAASSSTYGDH--------PGLP------ 164
Query: 198 VILRAESMKEEDLEVFRQDILGEFPNS-YAYTKCLAEGLVAECMEL-GMPCMILRP 251
K ED P S YA TK + E G + LR
Sbjct: 165 --------KVEDTIG--------KPLSPYAVTKYVNELYADVFSRCYGFSTIGLRY 204
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 42.0 bits (99), Expect = 3e-04
Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 61/230 (26%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
EN I ++G GF+ + ++ V + K N+ + E F
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYV----IASDWK----KNEHMTEDMFCDEFH-- 77
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATI-----RFDEPIK 143
++ + + + ++ + VD V+++AA +
Sbjct: 78 -------------LVDLRVME--------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSV 116
Query: 144 TAVILNTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAE 203
NT + +M+E ++ +K F Y S+A +P K L +
Sbjct: 117 IMYN-NTMISFNMIEAARI-NGIKRFFYASSACIYPEFKQ------LETTNVS------- 161
Query: 204 SMKEEDLEVFRQDILGEFPNS-YAYTKCLAEGLVAECMEL-GMPCMILRP 251
+KE D P + K E L + G+ C I R
Sbjct: 162 -LKESDAWP-------AEPQDAFGLEKLATEELCKHYNKDFGIECRIGRF 203
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 41.9 bits (99), Expect = 4e-04
Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 79/235 (33%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
E + I ++GG+GF+G +++ + + I V D L
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDK--GITDIL----------------------VVDNL 80
Query: 89 KT------LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA----TIRF 138
K L +I + D + +I E +V+ ++H A T
Sbjct: 81 KDGTKFVNLVDLNI--ADYMDKEDF------LIQIMAGEEFGDVEAIFHEGACSSTTEWD 132
Query: 139 DEPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPH 196
+ + N + ++++L + + + F Y S+A Y + +E R Y P +
Sbjct: 133 GKYMMDN---NYQYSKELLHYCLE-REIP-FLYASSAATYGGRTSDFIESREYEKPLNV- 186
Query: 197 QVILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILR 250
+ Y+K L + V + + + R
Sbjct: 187 ----------------------------FGYSKFLFDEYVRQILPEANSQIVGFR 213
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 41.5 bits (98), Expect = 4e-04
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 32/148 (21%)
Query: 30 NKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALK 89
N I + G G +G L +K+ +L E+ + ++
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGT------------------------ENVIASDIR 37
Query: 90 TLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA--TIRFDEPIKTAVI 147
L ++ + I + + + +Y +AA + ++ A
Sbjct: 38 KLN-TDVVNSGPFEVVNALDFN-QIEHLVEVH---KITDIYLMAALLSATAEKNPAFAWD 92
Query: 148 LNTRGTRDMLELSKQMKNLKCFTYISTA 175
LN +L L+K K +K + S+
Sbjct: 93 LNMNSLFHVLNLAKA-KKIKKIFWPSSI 119
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 40.8 bits (96), Expect = 8e-04
Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 39/139 (28%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLL--MRTKKGKTPNQRVEELFESPVFDALKT 90
+ + G +GF+G L E++L + ++Y L + P F
Sbjct: 3 VLILGVNGFIGNHLTERLL--REDHYEVYGLDIGSDA--------ISRFLNHPHF----- 47
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA-----TIRFDEPIKTA 145
+ GDI+ I KK D+V + A + P++
Sbjct: 48 ----------HFVEGDISIHSEWIEYHVKK-----CDVVLPLVAIATPIEYTRN-PLRV- 90
Query: 146 VILNTRGTRDMLELSKQMK 164
L+ ++ + +
Sbjct: 91 FELDFEENLRIIRYCVKYR 109
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 40.6 bits (96), Expect = 9e-04
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 41/144 (28%)
Query: 114 ISEIDKKELIDNVDIVYHVAA----TIRFDEPIKTAVILNTRGTRDMLELSKQMKNLKCF 169
+ +I E +V+ ++H A T + + N + ++++L + + + F
Sbjct: 57 LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDN---NYQYSKELLHYCLE-REIP-F 111
Query: 170 TYISTA--YCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDLEVFRQDILGEFPNSYAY 227
Y S+A Y + +E R Y P + Y Y
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNV-----------------------------YGY 142
Query: 228 TKCLAEGLVAECMEL-GMPCMILR 250
+K L + V + + + R
Sbjct: 143 SKFLFDEYVRQILPEANSQIVGFR 166
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 40.5 bits (95), Expect = 0.001
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 42/143 (29%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLL--MRTKKGKTPNQRVEELFESPVFD 86
+ K I ++GG+GF+G L +K++ V ++ T G+ N VE F
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLMMDGHEV---TVVDNFFT--GRKRN--VEHWIGHENF- 77
Query: 87 ALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA-----TIRFDEP 141
++I+ D+ + L VD +YH+A+ ++ P
Sbjct: 78 --------------ELINHDVV-----------EPLYIEVDQIYHLASPASPPNYMYN-P 111
Query: 142 IKTAVILNTRGTRDMLELSKQMK 164
IKT NT GT +ML L+K++
Sbjct: 112 IKTLKT-NTIGTLNMLGLAKRVG 133
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 39.9 bits (94), Expect = 0.001
Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 47/159 (29%)
Query: 28 YENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDA 87
+N++I ++GG+G GK + K+L N KKI + R D
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLD-TTNAKKIIVYSR--------------------DE 57
Query: 88 LK--TLRGKSILQKIQVISGDITQLKLGISEIDKKEL---IDNVDIVYHVAATIRFD--- 139
LK + + +++ GD+ D + L ++ VDI H AA
Sbjct: 58 LKQSEMAMEFNDPRMRFFIGDVR---------DLERLNYALEGVDICIHAAALKHVPIAE 108
Query: 140 ----EPIKTAVILNTRGTRDMLELSKQMKNLKCFTYIST 174
E IKT ++ G +++ + + +ST
Sbjct: 109 YNPLECIKTNIM----GASNVINACLK-NAISQVIALST 142
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 39.3 bits (91), Expect = 0.002
Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 38/199 (19%)
Query: 30 NKSIFLSGGSGFLGKVLIEKILRLEPNVK--KIYLLMRTKKGKTPNQRVEELFESPVFDA 87
+ + G +G +G L E + + K+Y + R +
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDN------------ 48
Query: 88 LKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEP-IKTAV 146
I + DI+ D + + + V HV + +
Sbjct: 49 -----------PINYVQCDISDPD------DSQAKLSPLTDVTHVFYVTWANRSTEQENC 91
Query: 147 ILNTRGTRDMLE-LSKQMKNLKCFTYIST--AYCHPSE---KVLEERTYLPPDDPHQVIL 200
N++ R++L+ + NLK + + Y P E K+ D P +
Sbjct: 92 EANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYM 151
Query: 201 RAESMKEEDLEVFRQDILG 219
E+ + + G
Sbjct: 152 NFYYDLEDIMLEEVEKKEG 170
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 38.8 bits (91), Expect = 0.004
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 48/162 (29%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFD-- 86
K+ ++G +GF+G L+EK+L+L NQ V D
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLKL-------------------NQVVI------GLDNF 58
Query: 87 ------ALKTLRGKSILQ---KIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR 137
L ++ + + I GDI L ++++ VD V H AA
Sbjct: 59 STGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLT------TCEQVMKGVDHVLHQAALGS 112
Query: 138 ----FDEPIKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA 175
+PI T N G ++L +K ++ FTY +++
Sbjct: 113 VPRSIVDPITTNAT-NITGFLNILHAAKN-AQVQSFTYAASS 152
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 37.9 bits (89), Expect = 0.006
Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 40/150 (26%)
Query: 30 NKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALK 89
I ++GG+GF+G L ++ V V D L+
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVT-------------------------VLDDLR 41
Query: 90 TLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA--TIRF--DEPIKTA 145
+ + + +L+ + +V +VYH+A+ ++ +P+
Sbjct: 42 VPPMIPPEGTGKFLEKPVLELEERD--------LSDVRLVYHLASHKSVPRSFKQPLDYL 93
Query: 146 VILNTRGTRDMLELSKQMKNLKCFTYISTA 175
N R +L L + ST
Sbjct: 94 D--NVDSGRHLLALCTS-VGVPKVVVGSTC 120
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 34.7 bits (80), Expect = 0.051
Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 46/192 (23%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
+ K I L G SGF+G L+ + L V ++ +K K N+ ++
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTA--VVRHPEKIKIENEHLK----------- 49
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFD-EPIKTAVI 147
V D++ S + E+ D V + + +
Sbjct: 50 -------------VKKADVS------SLDEVCEVCKGADAVISAFNPGWNNPDIYDETI- 89
Query: 148 LNTRGTRDMLELSKQMKNLKCFTYISTA---YCHPSEKVLEERTYLPPDDPHQVILRAES 204
+ +++ K+ + F + A + P ++++ + P ++ ++
Sbjct: 90 ---KVYLTIIDGVKKAG-VNRFLMVGGAGSLFIAPGLRLMDS-----GEVPENILPGVKA 140
Query: 205 MKEEDLEVFRQD 216
+ E L ++
Sbjct: 141 LGEFYLNFLMKE 152
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 33.8 bits (78), Expect = 0.091
Identities = 20/145 (13%), Positives = 49/145 (33%), Gaps = 37/145 (25%)
Query: 30 NKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALK 89
K + L+G +G G+ L+++IL EP + K+ R + P
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILS-EPTLAKVIAPARKALAEHP----------------- 46
Query: 90 TLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVI-L 148
++ G + +L +L ++D + T + + A +
Sbjct: 47 ---------RLDNPVGPLAEL--------LPQLDGSIDTAFCCLGTTIKEAGSEEAFRAV 89
Query: 149 NTRGTRDMLELSKQMKNLKCFTYIS 173
+ + + + + + + +S
Sbjct: 90 DFDLPLAVGKRALE-MGARHYLVVS 113
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 33.3 bits (77), Expect = 0.20
Identities = 34/153 (22%), Positives = 54/153 (35%), Gaps = 38/153 (24%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
+ ++GG GFLG L L ++ L ++KG T N L
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNL--SRKGATDN--------------LHW 45
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA------TIRFDEP--- 141
L + + GDI ++ + K D +H+A +I D P
Sbjct: 46 LSSLG---NFEFVHGDIRNKND-VTRLITKY---MPDSCFHLAGQVAMTTSI--DNPCMD 96
Query: 142 IKTAVILNTRGTRDMLELSKQMKNLKCFTYIST 174
+ N GT ++LE +Q + Y ST
Sbjct: 97 FEI----NVGGTLNLLEAVRQYNSNCNIIYSST 125
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 33.0 bits (76), Expect = 0.23
Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 49/152 (32%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKG---------KTPNQRVEEL 79
E + ++G +GF+ ++E++L + G + +++
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLL---------------EHGYKVRGTARSASKLANLQKR 54
Query: 80 FESPVFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFD 139
+++ +T + D+ + D E+I V H+A+ + F
Sbjct: 55 WDAKYPGRFET-----------AVVEDMLKQ----GAYD--EVIKGAAGVAHIASVVSFS 97
Query: 140 EP----IKTAVILNTRGTRDMLELSKQMKNLK 167
+ A+ GT + L + ++K
Sbjct: 98 NKYDEVVTPAI----GGTLNALRAAAATPSVK 125
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 31.9 bits (73), Expect = 0.36
Identities = 19/153 (12%), Positives = 53/153 (34%), Gaps = 34/153 (22%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLR 92
+ + G +G + + L+ ++ ++R + ++ EL E D
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPV---AMVRNE------EQGPELRERGASD------ 68
Query: 93 GKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTRG 152
++ ++ + D ++D V A + KT +I + G
Sbjct: 69 ---------IVVANLEE--------DFSHAFASIDAVVFAAGSGPHTGADKTILI-DLWG 110
Query: 153 TRDMLELSKQMKNLKCFTYISTAYCHPSEKVLE 185
++ +++ + +K F +S+ ++
Sbjct: 111 AIKTIQEAEK-RGIKRFIMVSSVGTVDPDQGPM 142
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.8 bits (72), Expect = 0.59
Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
I L G +G++G+ + + L L +LL+R + +++ + L A
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPT---FLLVRESTASSNSEKAQLLESFKASGA--- 58
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIK 143
++ G I E + NVD+V +++ + +
Sbjct: 59 ----------NIVHGSID------DHASLVEAVKNVDVVISTVGSLQIESQVN 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.75
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 10/30 (33%)
Query: 471 KESPESLESARKKMKVMY------ALHITA 494
K++ + L+++ K +Y AL I A
Sbjct: 19 KQALKKLQASLK----LYADDSAPALAIKA 44
>1mnn_A NDT80 protein; IG fold, protein_DNA complex, transcription-DNA
complex; 1.40A {Saccharomyces cerevisiae} SCOP: b.2.5.7
PDB: 2evg_A 2euv_A 2euw_A 2etw_A 2eux_A 2evf_A 2euz_A
2evh_A 2evi_A 2evj_A 1mn4_A 1m6u_A 1m7u_A
Length = 340
Score = 31.0 bits (69), Expect = 0.88
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 390 AVILISGNKPCLVRIQERIHRGFDVFEYYANNEW 423
V+ + +RI RI RGFD + + EW
Sbjct: 77 PVVESHTGRTLDLRIIPRIDRGFD----HIDEEW 106
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC,
structural genomics, protein structure initiative;
2.03A {Methanocaldococcus jannaschii DSM2661} SCOP:
c.74.1.2
Length = 192
Score = 29.9 bits (67), Expect = 1.6
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 3 NIGGAPDLVTIPKELQALPDRIAKTYENKSIFLS----GGSGFLGKVLIEKILRLEPNVK 58
NI + K++ AL RI K + G S + K+++ + P ++
Sbjct: 36 NIAESLPFPKDFKDVAALTGRIIKNKLGGFYIVGDIEFGASEHIAKIILS-ASKFNPEIR 94
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 30.1 bits (69), Expect = 2.1
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 254 VVPIYKEPLPGWTDNING 271
P+Y+ GW ++ G
Sbjct: 389 CEPVYET-FGGWKESTVG 405
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 29.7 bits (68), Expect = 2.7
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 254 VVPIYKEPLPGWTDNING 271
+ PIY+ +PGW++ G
Sbjct: 369 IEPIYET-MPGWSETTFG 385
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 29.4 bits (67), Expect = 3.0
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 254 VVPIYKEPLPGWTDNING 271
V YK LPGW +I+
Sbjct: 401 VEVQYKT-LPGWNTDISN 417
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 29.4 bits (67), Expect = 3.1
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 241 ELGMPCMILRPSIVVPIYKEPLPGWTDNING 271
+ P P+Y++ GW ++I+
Sbjct: 366 KGCYPVEEEISEEYEPVYEK-FSGWKEDIST 395
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 29.4 bits (67), Expect = 3.7
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 254 VVPIYKEPLPGWTDNING 271
+ Y+ LPGW +I+
Sbjct: 386 LHVEYEV-LPGWKSDISS 402
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 28.8 bits (65), Expect = 4.5
Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 77/225 (34%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKIL----------RLEPNVKKIYLLMRTKKGKTPNQRVEE 78
+++++ ++G SGF+G L+ ++L R NVKK+ L+ K +
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAE-------- 55
Query: 79 LFESPVFDALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRF 138
+ + D+ E E I V+HVA + F
Sbjct: 56 -------------------THLTLWKADLAD------EGSFDEAIKGCTGVFHVATPMDF 90
Query: 139 DEP------IKTAVILNTRGTRDMLELSKQMKNLKCFTYISTA----YCHPSEKVLEERT 188
+ IK + G +++ K ++ + S+A V +E
Sbjct: 91 ESKDPENEVIKPTI----EGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESC 146
Query: 189 YLPPDDPHQVILRAESMKEEDLEVFRQDILGEFPNSYAYTKCLAE 233
+ + RA+ M Y +K LAE
Sbjct: 147 WSDME-----FCRAKKMTA---------------WMYFVSKTLAE 171
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 28.9 bits (65), Expect = 4.7
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKT-----PNQRVEELFESPVFDA 87
+ ++G G +G+ L +L+ ++ L+R + P +L + D
Sbjct: 150 VAITGSRGLVGRALTA---QLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDG--ADV 204
Query: 88 LKTLRGKSILQK 99
L L G+ I +
Sbjct: 205 LVHLAGEPIFGR 216
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 28.4 bits (63), Expect = 5.8
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 29/123 (23%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
+ + + GG+G++GK ++ + L Y+L R + L
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPT---YVLFRPEVVSNI----------DKVQML 49
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELID---NVDIVYHVAATIRFDEPIKTA 145
+ ++I + D + L+D VD+V A I
Sbjct: 50 LYFKQLG----AKLIEASLD---------DHQRLVDALKQVDVVISALAGGVLSHHILEQ 96
Query: 146 VIL 148
+ L
Sbjct: 97 LKL 99
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 27.9 bits (63), Expect = 8.2
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 222 PNSYAYTKCLAEGLVAECMELGMPCMILRPSIVVPIYKEPLPGWTDNINGP 272
PN + + + G+ +IL ++P K+P+ D+ GP
Sbjct: 61 PNINRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGP 111
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 27.8 bits (63), Expect = 8.4
Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 50/161 (31%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
+ + ++GG GF+G I IL K P+ V D L
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILE-----------------KHPDWEV------INIDKL 38
Query: 89 ------KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAA------TI 136
L+ + + GD+ +L + + L+ VD V H+AA +I
Sbjct: 39 GYGSNPANLKDLEDDPRYTFVKGDVADYEL----VKE--LVRKVDGVVHLAAESHVDRSI 92
Query: 137 RFDEP---IKTAVILNTRGTRDMLELSKQMKNLKCFTYIST 174
P + + N GT +LE ++ F ++ST
Sbjct: 93 --SSPEIFLHS----NVIGTYTLLESIRRENPEVRFVHVST 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.418
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,426,652
Number of extensions: 519422
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 67
Length of query: 543
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 445
Effective length of database: 3,965,535
Effective search space: 1764663075
Effective search space used: 1764663075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.2 bits)