RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7538
(543 letters)
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 61.4 bits (148), Expect = 8e-11
Identities = 74/426 (17%), Positives = 127/426 (29%), Gaps = 84/426 (19%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
K ++G +G G L E +L V I + +RV+ +++ P
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFN----TERVDHIYQDP------- 50
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR-FDEPIKTAVILN 149
+ K + GD++ ++ I ++ D V + ++ F+ P TA + +
Sbjct: 51 ---HTCNPKFHLHYGDLSDTSN-LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADV-D 105
Query: 150 TRGTRDMLELSKQ--MKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPHQVILRAESM 205
GT +LE + ++ F ST+ Y E +E T P P
Sbjct: 106 AMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSP---------- 155
Query: 206 KEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIVVPIYKEPLPG 264
YA K A + E GM P G
Sbjct: 156 -------------------YAVAKLYAYWITVNYRESYGMYACNGILFNHES----PRRG 192
Query: 265 WTDNINGPTGLLIGAGKGVIRSMYCKNTGMADFLPADVAINGVFLFTWDFLNSKESERKS 324
T T + +G+ +Y G D L W L ++ E
Sbjct: 193 ETFVTRKITRAIANIAQGLESCLYL---GNMDSLRDWGHAKDYVKMQWMMLQQEQPE--- 246
Query: 325 VCNLTSNKDYKITWQEICDIGKDIVTSKIPFNSTLWYPGGTMTQSRLTHFICCLLFHWIP 384
+ + Y + ++ + K+ F T G + + H P
Sbjct: 247 DFVIATGVQYSVRQ--FVEMAAAQLGIKLRFEGTGVEEKG---------IVVSVTGHDAP 295
Query: 385 AYFLDAVILISGNKPCLVRIQERIHRGFDVFEYYANNEWEFKNGNLHQTRPKRNAREIVQ 444
VI + + R R +V + K +P+ RE+V
Sbjct: 296 GVKPGDVI---------IAVDPRYFRPAEVETLLGDPT---KAHEKLGWKPEITLREMVS 343
Query: 445 YCVEND 450
V ND
Sbjct: 344 EMVAND 349
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 56.2 bits (135), Expect = 3e-09
Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 65/232 (28%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
K I ++GG+GF+G L +K++ V V D T
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVT-------------------------VVDNFFT 36
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR----FDEPIKTAV 146
R +++ I + ++ + + L VD +YH+A+ PIKT
Sbjct: 37 GRKRNVEHWIGHENFELINHDV------VEPLYIEVDQIYHLASPASPPNYMYNPIKTLK 90
Query: 147 ILNTRGTRDMLELSKQMKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPHQVILRAES 204
NT GT +ML L+K + ST+ Y P E Y +P
Sbjct: 91 T-NTIGTLNMLGLAK--RVGARLLLASTSEVYGDPEVHPQSE-DYWGHVNPIGPR----- 141
Query: 205 MKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIVV 255
Y K +AE + M+ G+ + R
Sbjct: 142 ------------------ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTF 175
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 53.2 bits (127), Expect = 3e-08
Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 53/235 (22%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLR 92
I ++GG+GF+G ++ I++ + + + T G + + ++ ES
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDT-VVNIDKLTYAGNL--ESLSDISESN--------- 50
Query: 93 GKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR----FDEPIKTAVIL 148
+ DI I+ I ++ D V H+AA P
Sbjct: 51 ------RYNFEHADICDSAE-ITRIFEQY---QPDAVMHLAAESHVDRSITGPAAFIET- 99
Query: 149 NTRGTRDMLELSKQM--------KNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVIL 200
N GT +LE++++ KN F +IST + P
Sbjct: 100 NIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGD----------LPHPDEVENS 149
Query: 201 RAESMKEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIV 254
+ E + Y+ +K ++ LV G+P ++ S
Sbjct: 150 VTLPLFTETTAYAPS-------SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNN 197
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 50.0 bits (118), Expect = 4e-07
Identities = 54/321 (16%), Positives = 98/321 (30%), Gaps = 47/321 (14%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
K+I ++GG+GF+G + + P+V L T G N L+
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN--------------LEA 48
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNT 150
+ G +++++ GDI +L K + I + H + ++P N
Sbjct: 49 ILGD----RVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNS--LNDPSPFIHT-NF 101
Query: 151 RGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDL 210
GT +LE +++ Y L D P E E
Sbjct: 102 IGTYTLLEAARKYDIRFHHVSTDEVYGDLP---------LREDLPGHGEGPGEKFTAETN 152
Query: 211 EVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIVVPIYKEPLPGWTDNI 269
+ Y+ TK ++ +V + G+ I S Y+ I
Sbjct: 153 YNPS--------SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQI 204
Query: 270 NGPTGLLIGAGKGVIRSMYCKNTGMADFLPADVAINGVFLFTWDFLNSKESERKSVCNLT 329
G+ +Y + + D++ + GV+ E+
Sbjct: 205 T-------NILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG-RMGETYLIGADGEK 256
Query: 330 SNKDYKITWQEICDIGKDIVT 350
+NK+ E KD
Sbjct: 257 NNKEVLELILEKMGQPKDAYD 277
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 49.2 bits (116), Expect = 7e-07
Identities = 55/425 (12%), Positives = 109/425 (25%), Gaps = 91/425 (21%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
++G +G G L E +L V I R F + + L
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIV-------------RRSSSFNTGRIEHLYK 48
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNT 150
I +++ GD+T + +I + + + + + + ++
Sbjct: 49 NPQAHIEGNMKLHYGDLTDSTC-LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDG 107
Query: 151 RGTRDMLELSKQ--MKNLKCFTYISTA--YCHPSEKVLEERTYLPPDDPHQVILRAESMK 206
GT +L+ K + N F ST+ Y E +E T P P
Sbjct: 108 VGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSP----------- 156
Query: 207 EEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIVVPIYKEPLPGW 265
Y K A +V E + +
Sbjct: 157 ------------------YGAAKLYAYWIVVNFREAYNLFAVNGILF------------- 185
Query: 266 TDNINGPTGLLIGAGKGVIRSMYCKNTGMADFLPADVAINGVFLFTWDFLNSKESERKSV 325
N P + + RS+ G + G D+ ++K+
Sbjct: 186 --NHESPRRGANFVTRKISRSVAKIYLGQ-----LECFSLGNLDAKRDWGHAKDYVEAMW 238
Query: 326 CNLTSNKDYKITWQEICDIGKDIVTSKIPFNSTLWYPGGTMTQSRLTHFICCLLFHWIPA 385
L +++ + + H +++
Sbjct: 239 LMLQNDEPEDFVIATGE-----------------VHSVREFVEKSFLHIGKTIVWEGKN- 280
Query: 386 YFLDAVILISGNKPCLVRIQERIHRGFDVFEYYANNEWEFKNGNLHQTRPKRNAREIVQY 445
+ V V + + +R +V + K +P+ E+V+
Sbjct: 281 --ENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCT---KAKQKLNWKPRVAFDELVRE 335
Query: 446 CVEND 450
V D
Sbjct: 336 MVHAD 340
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 48.5 bits (114), Expect = 9e-07
Identities = 48/349 (13%), Positives = 95/349 (27%), Gaps = 63/349 (18%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
K + ++GG+G++G + +++ + L + L+
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVAR--------------LEV 47
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNT 150
L I D+ K ++K +D V H A E + +
Sbjct: 48 LTKH----HIPFYEVDLCDRK----GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYH 99
Query: 151 RGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDL 210
+ L + M+ ++ ++ +P + +
Sbjct: 100 NNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPL------------ 147
Query: 211 EVFRQDILGEFPNSYAYTKCLAEGLVAECME---LGMPCMILRPSIVVPIYKEPLPGWTD 267
N Y +TK E ++ + ILR + + L G +
Sbjct: 148 ---------GPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIG--E 196
Query: 268 NINGPTGLLIG------AGKGVIRSMYCKNTGMADFLPADVAINGVFLFTWDFLNSKESE 321
+ G L+ G+ ++ + D P I+ V L + E
Sbjct: 197 DPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLE 256
Query: 322 RK-------SVCNLTSNKDYKITWQEICDIGKDIVTSKIPFNSTLWYPG 363
NL S K T E+ +P+ T G
Sbjct: 257 AYNENEGLCREWNLGSGKG--STVFEVYHAFCKASGIDLPYKVTGRRAG 303
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 45.9 bits (107), Expect = 7e-06
Identities = 45/333 (13%), Positives = 97/333 (29%), Gaps = 37/333 (11%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLR 92
+ ++GG GFLG L L ++ L R L
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA-------------------TDNLH 43
Query: 93 GKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTRG 152
S L + + GDI ++ + K + D+ + A + +N G
Sbjct: 44 WLSSLGNFEFVHGDIRNKND-VTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGG 102
Query: 153 TRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDLEV 212
T ++LE +Q + Y ST Y + +
Sbjct: 103 TLNLLEAVRQYNSNCNIIYSSTNKV-----------YGDLEQYKYNETETRYTCVDKPNG 151
Query: 213 FRQDILGEFPNSYAYTKCLAEGLVAECMELGMPCMILRPSIVVPIYKEPLPGWTDNINGP 272
+ + +F + Y +K A+ + + + ++ + ++ +
Sbjct: 152 YDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWF 211
Query: 273 TGLLIGAGKGVIRSMYCKNTGMA--DFLPADVAINGVFLFTWDFLNSKESERKSVCNLTS 330
+ G+ + G D L A+ I+ + L + R + N+
Sbjct: 212 CQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLY----FTALANVSKIRGNAFNIGG 267
Query: 331 NKDYKITWQEICDIGKDIVTSKIPFNSTLWYPG 363
++ E+ + +D + F +
Sbjct: 268 TIVNSLSLLELFKLLEDYCNIDMRFTNLPVRES 300
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 45.3 bits (106), Expect = 1e-05
Identities = 44/331 (13%), Positives = 95/331 (28%), Gaps = 64/331 (19%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
EN I ++G GF+ + ++ V D
Sbjct: 14 ENLKISITGAGGFIASHIARRLKHEGHYVI-------------------------ASDWK 48
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVIL 148
K + + D+ ++ + + E +D+V + + F + + ++
Sbjct: 49 KNEHMTEDMFCDEFHLVDLRVME---NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 105
Query: 149 NTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEE 208
N + + ++ +K F Y S+A +P K +
Sbjct: 106 NNTMISFNMIEAARINGIKRFFYASSACIYPEFK--------------------QLETTN 145
Query: 209 DLEVFRQDILGEFPNSYAYTKCLAEGLV-AECMELGMPCMILRPSIVVPIYKEPLPGWTD 267
E +++ K E L + G+ C I R + P W
Sbjct: 146 VSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYG----PFGTWKG 201
Query: 268 NINGPTGLLIGAGKGVIRSMYCKNTGMA--DFLPADVAINGVFLFTWDFLNSKESERKSV 325
+ G+ F D + GV T +S+ +
Sbjct: 202 GREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLT-------KSDFREP 254
Query: 326 CNLTSNKDYKITWQEICDIGKDIVTSKIPFN 356
N+ S++ ++ E+ ++ K+P +
Sbjct: 255 VNIGSDEM--VSMNEMAEMVLSFEEKKLPIH 283
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 44.8 bits (105), Expect = 1e-05
Identities = 29/225 (12%), Positives = 59/225 (26%), Gaps = 47/225 (20%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLR 92
+ ++GG+GF+G + ++L V L L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPAD-------------EVIVLDSLTYAGNRANLA 49
Query: 93 GKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTRG 152
+++ + GDI + +D + + R N +G
Sbjct: 50 PVDADPRLRFVHGDIRD---AGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQG 106
Query: 153 TRDMLELSKQMKNLK-CFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEEDLE 211
T+ +L+ + + + Y E + L P+ P
Sbjct: 107 TQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSP---------------- 150
Query: 212 VFRQDILGEFPNSYAYTKCLAEGLVAECMEL-GMPCMILRPSIVV 255
YA +K ++ + G+ I R
Sbjct: 151 -------------YAASKAGSDLVARAYHRTYGLDVRITRCCNNY 182
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 45.0 bits (105), Expect = 1e-05
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 28/169 (16%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLR 92
+ ++GGSG++G ++L+ +V + L +K+ V ++ L
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--------------SVLPVIERLG 48
Query: 93 GKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIR----FDEPIKTAVIL 148
GK + GDI L + + +D V H A +P++
Sbjct: 49 GK----HPTFVEGDIRNEAL----MTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN- 99
Query: 149 NTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQ 197
N GT ++ + N+K F + S+A + + + P P
Sbjct: 100 NVNGTLRLISAMRAA-NVKNFIFSSSATVYGDQPKIPYVESFPTGTPQS 147
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 44.2 bits (103), Expect = 2e-05
Identities = 44/243 (18%), Positives = 82/243 (33%), Gaps = 46/243 (18%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
+ K ++G +GF+G L+E +L+L+ V + + D +
Sbjct: 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRN--------------LDEV 60
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVIL 148
++L + + I GDI L + +D V + + R T+
Sbjct: 61 RSLVSEKQWSNFKFIQGDIRNLD---DCNNACAGVDYVLHQAALGSVPRSINDPITSNAT 117
Query: 149 NTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEE 208
N G +ML ++ K + FTY +++ + P P
Sbjct: 118 NIDGFLNMLIAARDAKV-QSFTYAASSSTYGD----------HPGLP------------- 153
Query: 209 DLEVFRQDILGEFPNSYAYTKCLAEGLV-AECMELGMPCMILRPSIVVPIYKEPLPGWTD 267
+D +G+ + YA TK + E G + LR V ++P +
Sbjct: 154 ----KVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAA 209
Query: 268 NIN 270
I
Sbjct: 210 VIP 212
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 39.0 bits (89), Expect = 0.001
Identities = 41/327 (12%), Positives = 90/327 (27%), Gaps = 41/327 (12%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDAL 88
E + ++G +GF+ ++E++L V R S + +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKV-----------------RGTARSASKLANLQ 52
Query: 89 KTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVIL 148
K K + + D+ + E+I V H+A+ + F V
Sbjct: 53 KRWDAKYPGRFETAVVEDML------KQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTP 106
Query: 149 NTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKEE 208
GT + L + ++K F S+ K + + +
Sbjct: 107 AIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKP-------NVEGIYLDEKSWNLESID 159
Query: 209 DLEVFRQDILGEFPNSYAYTKCLAEGLVAECMELGMPCMILRPSIVVPIYKEPLPGWTDN 268
+ + + YA +K AE + M+ P L + T +
Sbjct: 160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQS 219
Query: 269 INGPTGLLIGAGKGVIRSMYCKNTGMADFLPADVAINGVFLFTWDFLNSKESERKSVCNL 328
+ +G ++ G + D+ + + + +
Sbjct: 220 GS-TSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLP-------QIERRRVY 271
Query: 329 TSNKDYKITWQEICD-IGKDIVTSKIP 354
+ + W + K + P
Sbjct: 272 GTAGTF--DWNTVLATFRKLYPSKTFP 296
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 38.7 bits (88), Expect = 0.001
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 28 YENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFD 86
++ K +F++G +GF G L + + VK L T RV + +S + D
Sbjct: 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGD 64
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 36.3 bits (82), Expect = 0.006
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 22 DRIAKTYE-----NKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRV 76
+ ++K E NKS+F+ G SG G+VL+++IL + K+ L+ R K
Sbjct: 1 EALSKLREDFRMQNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYK 59
Query: 77 EELFESPVFD 86
E F+
Sbjct: 60 NVNQEVVDFE 69
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 36.0 bits (82), Expect = 0.008
Identities = 41/348 (11%), Positives = 86/348 (24%), Gaps = 82/348 (23%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
+ +F++G G +G + ++ + ++ L R + ++ V + F S
Sbjct: 3 QRVFIAGHRGMVGSAIRRQLEQR--GDVELVLRTRDELNLLDSRAVHDFFAS-------- 52
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATI----RFDEPIKTAV 146
+ +D VY AA + + +
Sbjct: 53 ---------------------------------ERIDQVYLAAAKVGGIVANNTYPADFI 79
Query: 147 ILNTRGTRDMLELSKQMKNLKCFTYIST--AYCHPSEKVLEERTYLPPDDPHQVILRAES 204
N +++ + Q ++ ++ + Y +++ + E L
Sbjct: 80 YQNMMIESNIIHAAHQ-NDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEP-------- 130
Query: 205 MKEEDLEVFRQDILGEFPNS-YAYTKCLAEGLVAECMEL-GMPCMILRPSIVVPIYKEPL 262
N YA K L G + P+ + +
Sbjct: 131 -----------------TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 173
Query: 263 PGWTDNINGPTGLLIGAGKGVIRSMYCKNTGMA--DFLPADVAINGVFLFTWDFLNSKES 320
P + I A + +G +FL D +
Sbjct: 174 PSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA-HEVWL 232
Query: 321 ERKSVCNLTSNKDYKITWQ--EICDIGKDIVTSKIPFNSTLWYPGGTM 366
E N + E+ +V K P GT
Sbjct: 233 ENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTP 280
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 35.0 bits (79), Expect = 0.020
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 20/148 (13%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
+S ++G +G G L + +L V + + R+ EL
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT----RWRLRELGIEG------- 49
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNT 150
IQ GD+ + K V + + T +++
Sbjct: 50 --------DIQYEDGDMADACS-VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDG 100
Query: 151 RGTRDMLELSKQMKNLKCFTYISTAYCH 178
G +LE +Q F ST+
Sbjct: 101 LGVTHLLEAIRQFSPETRFYQASTSEMF 128
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 34.9 bits (78), Expect = 0.023
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
+ + GG G+ G + + V + L+R +E L +
Sbjct: 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLG--LESLTPIASIHDRIS 59
Query: 91 LRGKSILQKIQVISGDITQLKL 112
+ I++ GDI +
Sbjct: 60 RWKALTGKSIELYVGDICDFEF 81
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 34.0 bits (76), Expect = 0.035
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVE 77
++ ++G SG G+++ +K+ L+ + + +
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEAD 50
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 32.8 bits (73), Expect = 0.090
Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 13/150 (8%)
Query: 30 NKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALK 89
+ + ++GG+G++G + ++L I +G +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQ-------- 53
Query: 90 TLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILN 149
+ + ++ DI K + + A +P+ + N
Sbjct: 54 ----ELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-N 108
Query: 150 TRGTRDMLELSKQMKNLKCFTYISTAYCHP 179
GT +LE+ K S
Sbjct: 109 LTGTIQLLEIMKAHGVKNLVFSSSATVYGN 138
>d1mnna_ b.2.5.7 (A:) DNA-binding domain from NDT80 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 303
Score = 32.4 bits (73), Expect = 0.13
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 391 VILISGNKPCLVRIQERIHRGFDVFEYYANNEW 423
V+ + +RI RI RGFD + + EW
Sbjct: 46 VVESHTGRTLDLRIIPRIDRGFD----HIDEEW 74
>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 31.7 bits (70), Expect = 0.17
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTK 67
K + L+G +G G+ L+++IL EP + K+ R
Sbjct: 3 KRVLLAGATGLTGEHLLDRILS-EPTLAKVIAPARKA 38
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 30.4 bits (67), Expect = 0.48
Identities = 24/171 (14%), Positives = 46/171 (26%), Gaps = 19/171 (11%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKT 90
K ++G +G G L E +L V + R F + + +
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLI-------------RRSSNFNTQRINHIYI 48
Query: 91 LRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNT 150
+++ D+T + D V + + E +
Sbjct: 49 DPHNVNKALMKLHYADLTDASS-LRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVA 107
Query: 151 RGTRDMLELSKQMKNL-----KCFTYISTAYCHPSEKVLEERTYLPPDDPH 196
G +LE + K + S+ + E T P P+
Sbjct: 108 TGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPY 158
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 30.5 bits (67), Expect = 0.56
Identities = 38/346 (10%), Positives = 92/346 (26%), Gaps = 26/346 (7%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPVFDALKTLR 92
+ + GG+G++G + +LR + N + + + + +
Sbjct: 5 VLVCGGAGYIGSHFVRALLR-DTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 93 GKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTAVILNTRG 152
+ + GD+ + ID V + A N G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 153 TRDMLEL-----SKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESMKE 207
+L+ ++ E P ++ + E
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 208 EDLEVFRQD-----ILGEFPNSYAYTKCLAEGLVAECMELGMPCMILRPSIVVPIYKEPL 262
+ + I + N+ + G + +P ++ R + +
Sbjct: 184 RMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGR------VMSDIA 237
Query: 263 PGWTDNINGPTGLLIGAGKGVIRSMYCKNTGMA--DFLPADVAINGVFLFTWDFLNSKES 320
P I+ + + Y G D++ + L +
Sbjct: 238 PDQRLTIH--EDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPN 295
Query: 321 ERKS---VCNLTSNKDYKITWQEICDIGKDIVTSKIPFNSTLWYPG 363
++ V NL +++ Y + +E+ ++ + IP G
Sbjct: 296 DKSKYFSVFNLGTSRGYSV--REVIEVARKTTGHPIPVRECGRREG 339
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 29.6 bits (65), Expect = 0.96
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 29 ENKSIFLSGGSGFLGKVLIEKILR 52
+ K+I + G +G G LI
Sbjct: 2 QKKTIAVVGATGRQGASLIRVAAA 25
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 114
Score = 28.3 bits (63), Expect = 1.0
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 21 PDRIAKTYENKSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGK--TPNQRVEE 78
+ +A E ++L + G+ L + R+ P + +Y + R + P + +
Sbjct: 41 LEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLY-IDRAYREVAAAPIWHLAQ 99
Query: 79 LFESPVFDALK 89
+ FD
Sbjct: 100 VLLRARFDVRI 110
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 29.2 bits (64), Expect = 1.1
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVK 58
K I + G +G G + + ++ V
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVT 31
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 29.4 bits (64), Expect = 1.2
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 29 ENKS-IFLSGGSGFLGKVLIEKILRLEPNV 57
+ KS + + GG+G++GK ++ + L
Sbjct: 1 DKKSRVLIVGGTGYIGKRIVNASISLGHPT 30
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 28.6 bits (62), Expect = 1.9
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 31 KSIFLSGGSGFLGKVLIEKILRLEPNVKKIYLLMRTKKGKTPNQRVEELFESPV 84
I L G +G++G+ + + L L + Q +E S
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGA 57
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 27.7 bits (61), Expect = 4.1
Identities = 5/18 (27%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 254 VVPIYKEPLPGWTDNING 271
P+Y++ GW ++I+
Sbjct: 366 YEPVYEK-FSGWKEDIST 382
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
herpesvirus 4, MuHV-4 [TaxId: 33708]}
Length = 371
Score = 27.4 bits (60), Expect = 4.3
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 299 PADVAINGVFLFTWDFLNSKESERKSVCNLTSNKDYKITWQEICDIGKDIVTSKIPFNST 358
PA+ + D L+ E + +CN+ + + W + ++G++I+T ++PF S
Sbjct: 28 PAETEVTECAGILKDVLSKNLHELQGLCNVKNK--MGVPWVSVEELGQEIITGRLPFPSV 85
Query: 359 LWYPGGTMTQ 368
P + +
Sbjct: 86 GGTPVNDLVR 95
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 27.4 bits (60), Expect = 4.8
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 244 MPCMILRPSIVVPIYKEPLPGWTDNING 271
P V Y+ LPGW + G
Sbjct: 362 FPANQEILQKVEVEYET-LPGWKADTTG 388
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 195
Score = 27.1 bits (59), Expect = 4.8
Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 2/160 (1%)
Query: 86 DALKTLRGKSILQKIQVISGDITQLKLGISEIDKKELIDNVDIVYHVAATIRFDEPIKTA 145
T R K I+++ +VI G L+L D + I + + + A
Sbjct: 11 RGQTTERAKEIIERAEVIYGSRRALELAGVVDDSRARILRSFKGDEIRRIMEEGREREVA 70
Query: 146 VILNTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDPHQVILRAESM 205
VI + G + L + ++ + I S +V R + + V A+
Sbjct: 71 VI--STGDPMVAGLGRVLREIAEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCHAKDF 128
Query: 206 KEEDLEVFRQDILGEFPNSYAYTKCLAEGLVAECMELGMP 245
E E+ + L +S+ + L + V L M
Sbjct: 129 DAELTELLKYRHLLILADSHFPLERLGKRRVVLLENLCME 168
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 27.1 bits (58), Expect = 5.2
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 33 IFLSGGSGFLGKVLIEKILRLEPNV 57
I ++G +G LG+ + +++ V
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEV 28
>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 182
Score = 26.8 bits (59), Expect = 5.7
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 47 IEKILRLEPNVKKIYLLM---RTKKGKTPNQRVEE 78
IE IL L P + L K K +R +
Sbjct: 11 IESILALNPRTQSHAALHSTLAKKLDKKHWKRNPD 45
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 27.2 bits (58), Expect = 5.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 33 IFLSGGSGFLGKVLIEKILR 52
+ + G +GF+G L E++LR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 27.3 bits (60), Expect = 6.1
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 254 VVPIYKEPLPGWTDNING 271
V PIY+ +PGW+++ G
Sbjct: 368 VEPIYET-MPGWSESTFG 384
>d1erna1 b.1.2.1 (A:10-116) Erythropoietin (EPO) receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 26.0 bits (57), Expect = 6.2
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 311 TWDFLNSKESERKSVCNLTSNKDYKITWQEICDIGKDIVTSKIPFNSTLWYPGGTMTQSR 370
+ F E E +C L + + C + +S +P + G R
Sbjct: 43 NYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHR 102
Query: 371 LTH 373
+ H
Sbjct: 103 VIH 105
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 173
Score = 26.4 bits (58), Expect = 6.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 144 TAVILNTRGTRDMLELSKQMKNLKCFTYISTAYCHPSEKVLEERTYLPPDDP 195
A+I +G+R+ EL K+ LK + + + +P + + RT+ DDP
Sbjct: 17 YAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPRTWYEDDDP 68
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Length = 262
Score = 26.7 bits (58), Expect = 7.6
Identities = 8/63 (12%), Positives = 15/63 (23%)
Query: 403 RIQERIHRGFDVFEYYANNEWEFKNGNLHQTRPKRNAREIVQYCVENDNVDIVKYFEKAV 462
R GF E+ N +H ++ R + + Y +
Sbjct: 69 RDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKL 128
Query: 463 YGA 465
Sbjct: 129 TPE 131
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 429
Score = 26.6 bits (58), Expect = 7.8
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 254 VVPIYKEPLPGWTDNING 271
+ Y+ LPGW +I+
Sbjct: 372 LHVEYEV-LPGWKSDISS 388
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.418
Gapped
Lambda K H
0.267 0.0369 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,076,897
Number of extensions: 101291
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 46
Length of query: 543
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 453
Effective length of database: 1,171,896
Effective search space: 530868888
Effective search space used: 530868888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.9 bits)