BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7539
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
           Peptide Synthetase From Mycobacterium Tuberculosis
          Length = 478

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 2   VLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 61
           ++LE + R   + ++  L+R + ++++R RLE+ F S   E L+  +  +A  +++  + 
Sbjct: 89  LVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAA--DRLEVVA 146

Query: 62  GDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMI 121
           GD + PDLG+     + L+ET+ ++   AA V    Y + +   N  GT +++ ++    
Sbjct: 147 GDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHELF-GPNVAGTAELIRIA-LTT 204

Query: 122 HLQLFVYVSTA 132
            L+ F YVSTA
Sbjct: 205 KLKPFTYVSTA 215


>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
           (Rlmlk) From Escherichia Coli, Sah Binding
 pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
           (Rlmlk) From Escherichia Coli, Sah Binding
          Length = 703

 Score = 32.3 bits (72), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 87  YHIAATVRFDDYMQTYVFLNTRGTRDMLN-LSKQMIHLQLFVYVSTAYCH 135
           Y+    V   DY+ T +FL+ R  R ML  +SK    L LF Y  +A  H
Sbjct: 507 YNAHLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVH 556


>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
           (Rlmlk) From Escherichia Coli, Sam Binding
 pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
           (Rlmlk) From Escherichia Coli, Sam Binding
          Length = 702

 Score = 32.3 bits (72), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 87  YHIAATVRFDDYMQTYVFLNTRGTRDMLN-LSKQMIHLQLFVYVSTAYCH 135
           Y+    V   DY+ T +FL+ R  R ML  +SK    L LF Y  +A  H
Sbjct: 506 YNAHLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVH 555


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,429,744
Number of Sequences: 62578
Number of extensions: 390334
Number of successful extensions: 843
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 5
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)