RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7539
         (318 letters)



>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 312

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 41/215 (19%)

Query: 71  ISAEDRQMLSETIHIVYHIAATVRFDDYMQ---TYVFLNTRGTRDMLNLSKQMIHLQLFV 127
           I+ +  + L   +  +YH+A+     +YM      +  NT GT +ML L+K+       +
Sbjct: 54  INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR--VGARLL 111

Query: 128 YVSTA--YCHPKEKVLEEK--TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYA 183
             ST+  Y  P+     E    +  P+ P                             Y 
Sbjct: 112 LASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC--------------------------YD 145

Query: 184 YTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIR 242
             K + E +   YM+  G+   + R                ++    +  ++ A +G   
Sbjct: 146 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM-----NDGRVVSNFILQALQGEPL 200

Query: 243 TMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 277
           T+Y   S    F  V  LVNG++    + +S+P N
Sbjct: 201 TVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVN 235


>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 341

 Score = 33.8 bits (76), Expect = 0.023
 Identities = 38/243 (15%), Positives = 67/243 (27%), Gaps = 40/243 (16%)

Query: 77  QMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST-AYCH 135
               + +     + +  R  +   T    N  G  +ML  ++           S+  Y  
Sbjct: 89  CAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGD 148

Query: 136 PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE 195
                  E T   P+SP                             YA TK + E     
Sbjct: 149 HPGLPKVEDTIGKPLSP-----------------------------YAVTKYVNELYADV 179

Query: 196 YMEA-GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADF 254
           +    G   + LR   +    +DP   +   I   T  +I   +G    +  D  T  DF
Sbjct: 180 FSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMI---QGDDVYINGDGETSRDF 236

Query: 255 LPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKD-IARNKVPLNN 313
             ++  V           +  G   R          + +   +    +D +A N V  + 
Sbjct: 237 CYIENTVQA-----NLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHR 291

Query: 314 PII 316
             +
Sbjct: 292 EPV 294


>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
          eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
          2287]}
          Length = 91

 Score = 27.3 bits (61), Expect = 0.68
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 32 LEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIH 84
           ++ ++   ++   K        EK +   G+  + D G+     + L E   
Sbjct: 34 EKDAWEQVAWKLEAKYGDPITAIEKAV-KEGEKILIDAGVPEIWVKPLLEEAS 85


>d1nxha_ a.200.1.1 (A:) Hypothetical protein MTH393 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 124

 Score = 26.0 bits (57), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 160 ELLSKNELELLKQELLQDFPNGYAYTKCLCEG 191
           E++S ++ E LK E+ +    G  Y++ L EG
Sbjct: 83  EIISVDDAEALKDEITELVLAGREYSEALSEG 114


>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
          1280]}
          Length = 235

 Score = 25.7 bits (56), Expect = 7.9
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 24 KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV----AVPDLGIS 72
          ++K  R   E++ Q       K +      FE +  IN D+     +    ++
Sbjct: 22 EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLN 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,269,783
Number of extensions: 61192
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 10
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)