BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy754
(610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 167/593 (28%), Positives = 276/593 (46%), Gaps = 63/593 (10%)
Query: 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLV--DIPVLNTNLIL-SPLNW 99
++D+++VGAG G VA RL+E P +L+LEAG ++ + P+L L+ S +W
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 100 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 158
Y T A G G+ +P G+ +GG+S ++ M+ RG+ ++D +A + G+ GW+
Sbjct: 62 NYTTT-----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWN 116
Query: 159 YNEVLPYFKKAERI-QISELQNSS------YHGTQGFIGVDYTEYNTPMLDA-------- 203
++ + + +K E + ++ N+S HGT G + + + TP+ D
Sbjct: 117 WDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQ 176
Query: 204 ----FLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKD 259
F M G+PL G + + A++ R SS+ Y+ P + R NL+V
Sbjct: 177 SEEFFFNPDMGTGHPL---------GISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLI 227
Query: 260 SSFVKKILIDPVTKK----ACGVLATIKGI-DHKILARKEVILSAGAFNSPKLLMLSGIG 314
++ V K++ T C A +G + A+KEV+LSAG+ +P LL LSGIG
Sbjct: 228 NAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIG 287
Query: 315 PQEHLNDLNI-PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKL---FPQ 370
+ L+ + I ++ N VG NL +HL + F VN D + ++ + Q
Sbjct: 288 DENDLSSVGIDTIVNNPSVGRNLSDHLLLPA-AFFVNS--NQTFDNIFRDSSEFNVDLDQ 344
Query: 371 WYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDH 430
W G LT L LA++ LP IF + G S E ++
Sbjct: 345 WTNTRTGPLTALIANHLAWLR---------LPSNSSIFQTFPDPAAGPNSAHWETIFSNQ 395
Query: 431 LYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEG 490
++ D S+ ++ P +RG + L S+P PLI+ + + D+ +++
Sbjct: 396 WFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQA 455
Query: 491 IKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMG 550
+K + +A+ + + P T DA +R + H GT M
Sbjct: 456 VKSNLRFLSGQAWADF---VIRPFDPRLRDPT--DDAAIESYIRDNANTIFHPVGTASMS 510
Query: 551 PRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 603
PR S VVDP LKV GVD LR+VD SI+P P HT +Y++ ++ +D+IK
Sbjct: 511 PRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 170/593 (28%), Positives = 274/593 (46%), Gaps = 62/593 (10%)
Query: 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNT-----NLILSPLN 98
+DF+IVG G G TVA RL+E P+ +L++EAG DIP + T +L S +
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAG--IGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 99 WGYKT---EKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNY 155
W YKT ++D P GK +GG+S +N + G+K +D W + G
Sbjct: 65 WAYKTTMVRRDDYERI------EKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGK 118
Query: 156 GWSYNEVLPYFKKAE------RIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGM 209
W+++ ++PY +K+ R+ EL+ G + + P + +A
Sbjct: 119 EWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWK 178
Query: 210 EAGYPLVD--YNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKIL 267
G PL++ Y+G+ G T++ R +RS + ++ K + N+T+ K+++
Sbjct: 179 SMGQPLIENIYDGEMD-GLTHCCDTIY-RGQRSGSFLFV---KNKPNITIVPEVHSKRLI 233
Query: 268 IDPVTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV 326
I+ + GV + T G + A +EVILS G F +PKLLMLSGIGP L+ I
Sbjct: 234 INEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINT 293
Query: 327 IKNLR-VGENLQEHLAMAGLTFLVNQPIGL-LQDRLIKEMPKLFPQWYFEGKGKLTMLGC 384
I + R VG+NL +H G+ F++ G + D L++ PK K + +G
Sbjct: 294 IVDSRHVGQNLMDH---PGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGS 350
Query: 385 EGLAYVNTKYNVFP--DDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSV------- 435
L V FP D + + + A++GG +G + V
Sbjct: 351 GLLELVG-----FPRIDKYLEKDAEYRKAK-AANGGKDPFSPLGQPHFELDFVCMFGTAF 404
Query: 436 ---YSSVDRKDSWSIWPMILYPRSR-GKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGI 491
+ + D ++ ++ P S G+V L + P P I+ NFF + D+ + EGI
Sbjct: 405 QWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGI 464
Query: 492 KMAIE-LSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMG 550
+ + + L K + F+ + + + +P SD +V H GT ++
Sbjct: 465 RFSYDLLFKGEGFKDLVESEYPWEMP------LDSDKEMHRAVLDRCQTAFHPTGTARLS 518
Query: 551 PRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 603
D VVDP+LKV+G+ LRV DAS+IP+IP VY + EK +DMIK
Sbjct: 519 KNID-QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIK 570
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 163/573 (28%), Positives = 261/573 (45%), Gaps = 70/573 (12%)
Query: 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLN--TNLILSPLNWG 100
E+D+I+VG G G VA RLSE P + L+EAG + ++ L+ L+ S +W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 101 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 159
Y E ++ ++ R K +GG S N+ + + + D+W AK G GW+
Sbjct: 73 YPIEPQENGNSF-MRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 160 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 219
P +K+ E + + ++ +HG G + + P A L A +AG P +N
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 220 GKTQTGFARAQATLHKR---SRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 276
T +++R +R SS+ YI PI ++ N T+ ++++ D ++
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCT 244
Query: 277 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV-IKNLRVG 333
GV + + G H++ AR EV+LS GA ++PKLLMLSGIGP HL + I V + + VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 334 ENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTK 393
E+LQ+H P G++Q + M QW+ G T G
Sbjct: 305 EHLQDH------------PEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGL--------- 343
Query: 394 YNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILY 453
D PD+ + +V +M H Y + ++ +S+ P + +
Sbjct: 344 ------DRPDLMMHYGSVPF----------DMNTLRHGYPTT------ENGFSLTPNVTH 381
Query: 454 PRSRGKVLLKDSHPLTPPLIHANFFNDTR--DLDVIVEGIKMAIELSKTKAFQS-IGSTL 510
RSRG V L+ P++ +F D D+ V+V GI+ A E++ A G L
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL 441
Query: 511 HKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDN 570
PG T D +R ++H GT +MG D + +DP+L+V GV
Sbjct: 442 S----PGVEAQT---DEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTG 494
Query: 571 LRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 603
LRV DAS++P + V MI E+ +D+I+
Sbjct: 495 LRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 163/573 (28%), Positives = 260/573 (45%), Gaps = 70/573 (12%)
Query: 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLN--TNLILSPLNWG 100
E+D+I+VG G G VA RLSE P + L+EAG + ++ L+ L+ S +W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 101 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 159
Y E ++ ++ R K +GG S N + + + D+W AK G GW+
Sbjct: 73 YPIEPQENGNSF-MRHARA-----KVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNA 126
Query: 160 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 219
P +K+ E + + ++ +HG G + + P A L A +AG P +N
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 220 GKTQTGFARAQATLHKR---SRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 276
T +++R +R SS+ YI PI ++ N T+ ++++ D ++
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCT 244
Query: 277 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV-IKNLRVG 333
GV + + G H++ AR EV+LS GA ++PKLLMLSGIGP HL + I V + + VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 334 ENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTK 393
E+LQ+H P G++Q + M QW+ G T G
Sbjct: 305 EHLQDH------------PEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGL--------- 343
Query: 394 YNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILY 453
D PD+ + +V +M H Y + ++ +S+ P + +
Sbjct: 344 ------DRPDLMMHYGSVPF----------DMNTLRHGYPTT------ENGFSLTPNVTH 381
Query: 454 PRSRGKVLLKDSHPLTPPLIHANFFNDTR--DLDVIVEGIKMAIELSKTKAFQS-IGSTL 510
RSRG V L+ P++ +F D D+ V+V GI+ A E++ A G L
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL 441
Query: 511 HKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDN 570
PG T D +R ++H GT +MG D + +DP+L+V GV
Sbjct: 442 S----PGVEAQT---DEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTG 494
Query: 571 LRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 603
LRV DAS++P + V MI E+ +D+I+
Sbjct: 495 LRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 163/573 (28%), Positives = 260/573 (45%), Gaps = 70/573 (12%)
Query: 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLN--TNLILSPLNWG 100
E+D+I+VG G G VA RLSE P + L+EAG + ++ L+ L+ S +W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 101 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 159
Y E ++ ++ R K +GG S N+ + + + D+W AK G GW+
Sbjct: 73 YPIEPQENGNSF-MRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 160 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 219
P +K+ E + + ++ +HG G + + P A L A +AG P +N
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 220 GKTQTGFARAQATLHKR---SRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 276
T +++R +R SS+ YI PI ++ N T+ ++++ D ++
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCT 244
Query: 277 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV-IKNLRVG 333
GV + + G H++ AR EV+LS GA ++PKLLMLSGIGP HL + I V + + VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 334 ENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTK 393
E+LQ+H P G++Q + M QW+ G T G
Sbjct: 305 EHLQDH------------PEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGL--------- 343
Query: 394 YNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILY 453
D PD+ + +V +M H Y + ++ +S+ P + +
Sbjct: 344 ------DRPDLMMHYGSVPF----------DMNTLRHGYPTT------ENGFSLTPNVTH 381
Query: 454 PRSRGKVLLKDSHPLTPPLIHANFFNDTR--DLDVIVEGIKMAIELSKTKAFQS-IGSTL 510
RSRG V L+ P++ +F D D+ V+V GI+ A E++ A G L
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL 441
Query: 511 HKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDN 570
PG T D +R +H GT +MG D + +DP+L+V GV
Sbjct: 442 S----PGVEAQT---DEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTG 494
Query: 571 LRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 603
LRV DAS++P + V MI E+ +D+I+
Sbjct: 495 LRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 166/591 (28%), Positives = 264/591 (44%), Gaps = 53/591 (8%)
Query: 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY-FNYLVDIPVLNT--NLILSPLNWGY 101
D+II G G G T A RL+E P+ +L++E+G Y + I LN ++ S ++ Y
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAY 80
Query: 102 KTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYN 160
+T + L Q SG G+GG++L+N +TR +K D W + GN GW+++
Sbjct: 81 ETVE------LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWD 134
Query: 161 EVLPYFKKAER--------IQISELQNSSYHGTQGFI-------GVDYTEYNTPMLDAFL 205
V Y +AER I N+S HG G + G DY+ P++ A +
Sbjct: 135 NVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYS----PIVKALM 190
Query: 206 QAGMEAGYPLV-DYNGKTQTGFARAQATLHKRSRRS-SAKDYIDPIKKRCNLTVKDSSFV 263
A + G P D+ G + TLH+ RS +A++++ P +R NL V +V
Sbjct: 191 SAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYV 250
Query: 264 KKILI--DPVTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN 320
K+L+ + T +A GV T KG H + A+ EV+L+AG+ SP +L SGIG + L
Sbjct: 251 GKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILE 310
Query: 321 DLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLT 380
L I + +L VG NLQ+ + + + G Q + F Y E +L
Sbjct: 311 PLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGD-YSEKAHELL 369
Query: 381 MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVD 440
E A F + TA+ + + + R + + Y+ ++
Sbjct: 370 NTKLEQWAEEAVARGGFHNT--------TALLIQYE---NYRDWIVNHNVAYSELFLDTA 418
Query: 441 RKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIH-ANFFNDTRDLDVIVEGIKMAIELSK 499
S+ +W ++ P +RG V + D P + +F + DL ++A +S
Sbjct: 419 GVASFDVWDLL--PFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISN 476
Query: 500 TKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVV 559
+ A Q+ IPG + + W + + +H GTC M P+ + VV
Sbjct: 477 SGAMQTY---FAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPK-EMGGVV 532
Query: 560 DPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPNQ 610
D +VYGV LRV+D SI P H + V Y +A K SD I + + Q
Sbjct: 533 DNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 583
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 152/560 (27%), Positives = 249/560 (44%), Gaps = 72/560 (12%)
Query: 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDI--PVLNTNLILSPLNWGYK 102
D +IVG G G +A RLSE P ++LL+EAG DI P L +W Y+
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDWDYR 77
Query: 103 TEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNE 161
TE + G G+ W G+ +GG+S ++ M Y RG+ ++ W G+ W ++E
Sbjct: 78 TEAQ-----AGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 162 VLPYFKKAERIQISELQNSSYHGTQGFIGVDY-TEYNTPMLDAFLQAGMEAGYPLVD-YN 219
+LP F+ I+ L HG G + + + +P+ AF++AG G P ++ +N
Sbjct: 133 LLPVFQA---IEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHN 189
Query: 220 GKTQTGFARAQATLHKRSRRSSAKDYI-DPIKKRCNLTVKDSSFVKKILIDPVTKKACGV 278
G + R ++A ++ ++ R NLT+ S V+++ ++ ++ V
Sbjct: 190 SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEV 249
Query: 279 LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNL-RVGENLQ 337
+ + ++ A +++L AGA SP LLM SGIGP + L+ + + ++ +G NLQ
Sbjct: 250 VG--RQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQ 306
Query: 338 EHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVF 397
+HL AG + +P+ + + + M + + ++GC G+A
Sbjct: 307 DHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGC-GVA--------- 356
Query: 398 PDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSR 457
P + F A + S ++S+ I +P SR
Sbjct: 357 ----PIVSESFPAPAAGS----------------------------AYSLLFGITHPTSR 384
Query: 458 GKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ-SIGSTLHKAPIP 516
G V + +I + RD E + A+E S+T + + + +P
Sbjct: 385 GSVRISGPELGDRLIIDPAYLQTGRDR----ERFRRALEASRTIGHRDELAGWRERELLP 440
Query: 517 GCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDA 576
G D + SV IT HH CGTC+MG D AVVD L++ +DNL VVDA
Sbjct: 441 GTPNSAAEMDDFIARSV--ITH--HHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDA 494
Query: 577 SIIPVIPGGHTVAVVYMIAE 596
SI+P + G A V IAE
Sbjct: 495 SIMPNLTAGPIHAAVLAIAE 514
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 152/582 (26%), Positives = 252/582 (43%), Gaps = 50/582 (8%)
Query: 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWG--Y 101
YD+II G G G TVA +L+E P K+L++E G Y + + +I P +G +
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESN-------DGAIIEDPNAYGQIF 77
Query: 102 KTEKEDCRACLGLKGQRCP-WPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSY 159
T + + L R +GKG+GG++LIN +TR +K D W K+ G GW++
Sbjct: 78 GTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 160 NEVLPYFKKAE--------RIQISELQNSSYHGTQGFI---GVDYTEYNTPMLDAFLQAG 208
+ + Y KKAE ++ N++ HGT G + D + +P++ A +
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV 197
Query: 209 MEAGYPLV-DYNGKTQTGFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKKI 266
G P+ D+ G + L + R +A+ ++ P +R NL + V K+
Sbjct: 198 SALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKV 257
Query: 267 LIDPVTK--KACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLN 323
L +A GV T K ++ + A+ EV+L+AG+ SP +L SGIG + L+ N
Sbjct: 258 LFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQAN 317
Query: 324 IPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLTMLG 383
+ + +L VG N+Q+ + + G Q + F + + + L
Sbjct: 318 VTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLL---- 373
Query: 384 CEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKD 443
NTK + + ++ F V+ + R + D + ++ + K
Sbjct: 374 -------NTKLDQWAEETV-ARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKI 425
Query: 444 SWSIWPMILYPRSRGKVLLKDSHPLTPPLIH-ANFFNDTRDLDVIVEGIKMAIELSKTKA 502
++ +W +I P +RG V + S P + FF + DL K+A +L+ A
Sbjct: 426 NFDLWDLI--PFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGA 483
Query: 503 FQS--IGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVD 560
+ G TL PG + + + W V H +C M R + VVD
Sbjct: 484 MKEYFAGETL-----PGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSR-ELGGVVD 537
Query: 561 PQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 602
KVYG LRV+D SI P H + + Y +A K +D I
Sbjct: 538 ATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAI 579
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 152/604 (25%), Positives = 232/604 (38%), Gaps = 130/604 (21%)
Query: 22 EDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81
D F L + D +L YD++IVG G GC +A LSE +K+L+LE G
Sbjct: 5 SDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG----- 57
Query: 82 LVDIPVLNTNLILSPLNWGYKTEKEDCRACL--------GLKGQRCPWPSGKGVGGTSLI 133
+P N +L+ + Y ++ED G+ R G+ +GGTS+I
Sbjct: 58 --SLPTAYPN-VLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVR-----GRVLGGTSII 109
Query: 134 NTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY 193
N +Y R N Y W + V ++ E + + + S+
Sbjct: 110 NAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTK------ 159
Query: 194 TEYNTPMLDAFLQAGMEA--GYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK 251
AFL+AG+ G+ L G TG +T + R +A + ++
Sbjct: 160 --------TAFLEAGVHPNHGFSLDHEEGTRITG-----STFDNKGTRHAADELLNK-GN 205
Query: 252 RCNLTVKDSSFVKKILIDPVTKKACGVLAT------IKGIDHKILARK--EVILSAGAFN 303
NL V + V+KI+ A G+ AT G H+ R EVI+SAG
Sbjct: 206 SNNLRVGVHASVEKIIF----SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIG 261
Query: 304 SPKLLMLSGIGPQEHLNDLNIPVI-KNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIK 362
+P+LL+LSG+GP+ +L+ LNIPV+ + VG+ FL + P +
Sbjct: 262 TPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQ------------FLHDNP---------R 300
Query: 363 EMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLR 422
+ P E +T+LG Y ++ P P F F + S
Sbjct: 301 NFINILPPNPIE-PTIVTVLGISNDFY-QCSFSSLPFTTPPFGF-FPSSSYP-------- 349
Query: 423 QEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPL-TPPLIHANFFNDT 481
L NS ++ K + P S G + LK S + P + N++++
Sbjct: 350 --------LPNSTFAHFASK--------VAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNL 393
Query: 482 RDLDVIVEGIKMAIELSKTKAFQSI---------GSTLHKAPIPGCSQYTFGSDAYWGCS 532
DL V G+K EL T A + G + P+P DA +
Sbjct: 394 TDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQT----DDAAFETF 449
Query: 533 VRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVY 592
R H G C +G V+D +V G++ LRVVD S P P H
Sbjct: 450 CRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYL 503
Query: 593 MIAE 596
M+
Sbjct: 504 MLGR 507
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 152/604 (25%), Positives = 232/604 (38%), Gaps = 130/604 (21%)
Query: 22 EDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81
D F L + D +L YD++IVG G GC +A LSE +K+L+LE G
Sbjct: 5 SDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG----- 57
Query: 82 LVDIPVLNTNLILSPLNWGYKTEKEDCRACL--------GLKGQRCPWPSGKGVGGTSLI 133
+P N +L+ + Y ++ED G+ R G+ +GGTS+I
Sbjct: 58 --SLPTAYPN-VLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVR-----GRVLGGTSII 109
Query: 134 NTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY 193
N +Y R N Y W + V ++ E + + + S+
Sbjct: 110 NAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTK------ 159
Query: 194 TEYNTPMLDAFLQAGMEA--GYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK 251
AFL+AG+ G+ L G TG +T + R +A + ++
Sbjct: 160 --------TAFLEAGVHPNHGFSLDHEEGTRITG-----STFDNKGTRHAADELLNK-GN 205
Query: 252 RCNLTVKDSSFVKKILIDPVTKKACGVLAT------IKGIDHKILARK--EVILSAGAFN 303
NL V + V+KI+ A G+ AT G H+ R EVI+SAG
Sbjct: 206 SNNLRVGVHASVEKIIF----SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIG 261
Query: 304 SPKLLMLSGIGPQEHLNDLNIPVI-KNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIK 362
+P+LL+LSG+GP+ +L+ LNIPV+ + VG+ FL + P +
Sbjct: 262 TPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQ------------FLHDNP---------R 300
Query: 363 EMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLR 422
+ P E +T+LG Y ++ P P F F + S
Sbjct: 301 NFINILPPNPIE-PTIVTVLGISNDFY-QCSFSSLPFTTPPFGF-FPSSSYP-------- 349
Query: 423 QEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPL-TPPLIHANFFNDT 481
L NS ++ K + P S G + LK S + P + N++++
Sbjct: 350 --------LPNSTFAHFASK--------VAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNL 393
Query: 482 RDLDVIVEGIKMAIELSKTKAFQSI---------GSTLHKAPIPGCSQYTFGSDAYWGCS 532
DL V G+K EL T A + G + P+P DA +
Sbjct: 394 TDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQT----DDAAFETF 449
Query: 533 VRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVY 592
R H G C +G V+D +V G++ LRVVD S P P H
Sbjct: 450 CRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYL 503
Query: 593 MIAE 596
M+
Sbjct: 504 MLGR 507
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 150/604 (24%), Positives = 232/604 (38%), Gaps = 119/604 (19%)
Query: 23 DGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYL 82
D F L + D +L YD++IVG G GC +A LSE +K+L+LE G
Sbjct: 6 DHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG------ 57
Query: 83 VDIPVLNTNLILSPLNWGYKTEKED---CRACLGLKGQRCPWPSGKGVGGTSLINTMLYT 139
+P NL+ S + Y ++ED + G G+ +GGTS+IN +Y
Sbjct: 58 -TLPTAYPNLLTSD-GFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYA 115
Query: 140 RGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQIS-ELQNSSYHGTQGFI--GVDYTEY 196
R N + + A I+ +L N +Y + I D +
Sbjct: 116 RANTKIF---------------------SASGIEWDMDLVNQTYDWVEDTIVYKPDKQAW 154
Query: 197 NTPMLDAFLQAGM--EAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCN 254
+ AFL+AG+ + G+ L G TG +T R ++ + ++ N
Sbjct: 155 QSLTKTAFLEAGVLPDNGFSLDHEAGTRLTG-----STFDNNGTRHASDELLNKGDPN-N 208
Query: 255 LTVKDSSFVKKILIDPVTKKACGVLATIK---GIDHKILARKE--VILSAGAFNSPKLLM 309
L V + V+KI+ + + K G H+ R E VI+SAG SP+LL+
Sbjct: 209 LRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLL 268
Query: 310 LSGIGPQEHLNDLNIPVI-KNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLF 368
LSG+GP+ +L+ LNIPV+ + VG+ FL + P + +
Sbjct: 269 LSGVGPESYLSSLNIPVVLSHPYVGQ------------FLHDNP---------RNFINIL 307
Query: 369 PQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGIT 428
P E +T+LG Y ++ P +P F T
Sbjct: 308 PPNPIE-PSTVTVLGITSNFY-QCSFSSLPFSIPPFAFFPNP-----------------T 348
Query: 429 DHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLL-KDSHPLTPPLIHANFFNDTRDLDVI 487
L NS ++ K + P S G + L DS P + N+++++ DL
Sbjct: 349 YPLPNSTFAHFVNK--------VPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHC 400
Query: 488 VEGIKMAIELSKTKAFQSI---------GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITT 538
V G+K EL + A + G + P+P DA + R
Sbjct: 401 VSGMKKIGELLSSDALKPYKVEDLPGIDGFDILGIPLPENQT----DDAAFETFCREAVA 456
Query: 539 QLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKA 598
H G C +G V+D +V G++ LRVVD S P P H M+
Sbjct: 457 SYWHYHGGCLVG------EVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYV 510
Query: 599 SDMI 602
I
Sbjct: 511 GSKI 514
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 149/604 (24%), Positives = 228/604 (37%), Gaps = 117/604 (19%)
Query: 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN------YLV-----------DIP 86
YD+IIVGAGPGG A+RLSE K+LLLE G Y+ DIP
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 66
Query: 87 VLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNY 146
L +L + + + CL VGG + +N LY N ++
Sbjct: 67 GLFESLFTDSNPFWWCKDITVFAGCL--------------VGGGTSVNGALYWYPNDGDF 112
Query: 147 DDWAKLGNYGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 204
+ GW S+ PY K S L ++ + T G Y E + ++
Sbjct: 113 SS-----SVGWPSSWTNHAPYTSKLS----SRLPSTDHPSTDG---QRYLEQSFNVVSQL 160
Query: 205 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 264
L+ + D F + R Y+ R N T K + V
Sbjct: 161 LKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVS 220
Query: 265 KILIDPVTKKACGVLATIKGIDHK----ILARKEVILSAGAFNSPKLLMLSGIGPQEHLN 320
++ + + GV + + + VILSAGAF + ++L SGIGP + +
Sbjct: 221 NVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQ 278
Query: 321 DLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGL-LQDR----LIKEMPKL--FPQWYF 373
V N A+ +N P+G+ QD L+ P + + W
Sbjct: 279 ----------TVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWAD 328
Query: 374 EGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYN 433
+ Y+ + VF P + F + A S SDG R G
Sbjct: 329 VWSNPRP---ADAAQYLANQSGVFAGASPKLNF-WRAYS-GSDG--FTRYAQGTVRPGAA 381
Query: 434 SVYSSVDRKDSWSIWPMILY----PRSRGKVLLKDS---HPLTPPLIHANFFNDTRDLDV 486
SV SS+ S I+ + +Y +SRG++ + + LTPP + + D V
Sbjct: 382 SVNSSLPYNAS-QIFTITVYLSTGIQSRGRIGIDAALRGTVLTPP-----WLVNPVDKTV 435
Query: 487 IVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGS--------DAYWGCSVRHITT 538
+++ + + +IGS IPG + T DAY T
Sbjct: 436 LLQALHDVVS--------NIGS------IPGLTMITPDVTQTLEEYVDAY-----DPATM 476
Query: 539 QLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKA 598
+H + +G SAVVD +KV+G +NL +VDA IIP +P G+ + AE+A
Sbjct: 477 NSNHWVSSTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA 535
Query: 599 SDMI 602
+ I
Sbjct: 536 AAKI 539
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 149/604 (24%), Positives = 228/604 (37%), Gaps = 117/604 (19%)
Query: 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN------YLV-----------DIP 86
YD+IIVGAGPGG A+RLSE K+LLLE G Y+ DIP
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 61
Query: 87 VLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNY 146
L +L + + + CL VGG + +N LY N ++
Sbjct: 62 GLFESLFTDSNPFWWCKDITVFAGCL--------------VGGGTSVNGALYWYPNDGDF 107
Query: 147 DDWAKLGNYGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 204
+ GW S+ PY K S L ++ + T G Y E + ++
Sbjct: 108 SS-----SVGWPSSWTNHAPYTSKLS----SRLPSTDHPSTDG---QRYLEQSFNVVSQL 155
Query: 205 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 264
L+ + D F + R Y+ R N T K + V
Sbjct: 156 LKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVS 215
Query: 265 KILIDPVTKKACGVLATIKGIDHK----ILARKEVILSAGAFNSPKLLMLSGIGPQEHLN 320
++ + + GV + + + VILSAGAF + ++L SGIGP + +
Sbjct: 216 NVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQ 273
Query: 321 DLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGL-LQDR----LIKEMPKL--FPQWYF 373
V N A+ +N P+G+ QD L+ P + + W
Sbjct: 274 ----------TVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWAD 323
Query: 374 EGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYN 433
+ Y+ + VF P + F + A S SDG R G
Sbjct: 324 VWSNPRP---ADAAQYLANQSGVFAGASPKLNF-WRAYS-GSDG--FTRYAQGTVRPGAA 376
Query: 434 SVYSSVDRKDSWSIWPMILY----PRSRGKVLLKDS---HPLTPPLIHANFFNDTRDLDV 486
SV SS+ S I+ + +Y +SRG++ + + LTPP + + D V
Sbjct: 377 SVNSSLPYNAS-QIFTITVYLSTGIQSRGRIGIDAALRGTVLTPP-----WLVNPVDKTV 430
Query: 487 IVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGS--------DAYWGCSVRHITT 538
+++ + + +IGS IPG + T DAY T
Sbjct: 431 LLQALHDVVS--------NIGS------IPGLTMITPDVTQTLEEYVDAY-----DPATM 471
Query: 539 QLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKA 598
+H + +G SAVVD +KV+G +NL +VDA IIP +P G+ + AE+A
Sbjct: 472 NSNHWVSSTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA 530
Query: 599 SDMI 602
+ I
Sbjct: 531 AAKI 534
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
Length = 464
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLIL 94
YD I++G GPGG A R +++ K+L +EAG +++ + T +L
Sbjct: 7 YDLIVIGTGPGGYHAAIRAAQL-GLKVLAVEAGEVGGVCLNVGCIPTKALL 56
>pdb|3H04|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 275
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 331 RVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGK-LTMLGCEGLAY 389
++ +++ E + +A LT P ++QD++ + + Y G GK + M+ Y
Sbjct: 145 KIAQSINETM-IAQLT----SPTPVVQDQIAQ---RFLIYVYARGTGKWINMINIAD--Y 194
Query: 390 VNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKD 443
++KYN+ PD+L + +F A D V + + I +H+ +S + V++ +
Sbjct: 195 TDSKYNIAPDELKTLPPVFIA-HCNGDYDVPVEESEHIMNHVPHSTFERVNKNE 247
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLE 74
+D I++G GPGG T+A+ ++ H ++LLLE
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGH-RVLLLE 37
>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
Length = 344
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 DQDLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAG 76
D D E D +IVGAG G + A LS + P +I ++EAG
Sbjct: 73 DLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
Length = 623
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 17 IKYDVVIVGSGPIGCTYAREL 37
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 17 IKYDVVIVGSGPIGCTYAREL 37
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 45 IKYDVVIVGSGPIGCTYAREL 65
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The
White-Rot Fungus Peniophora Sp
Length = 622
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 42 LEYDFIIVGAGPGGCTVANRL 62
++YD +IVG+GP GCT A L
Sbjct: 44 IKYDVVIVGSGPIGCTYAREL 64
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 74
+ D +IVG GP G T+A +L+ P + ++E
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVE 63
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 47 IIVGAGPGGCTVANRLSEIPHWKILLLEA 75
I+VGAG G + A RLSE +L+LEA
Sbjct: 8 IVVGAGMSGISAAKRLSEAGITDLLILEA 36
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 47 IIVGAGPGGCTVANRLSEIPHWKILLLEA 75
I+VGAG G + A RLSE +L+LEA
Sbjct: 8 IVVGAGMSGISAAKRLSEAGITDLLILEA 36
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEI--PHWKIL 71
+ D +++GAGP G A RL++I P W I+
Sbjct: 5 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWXIV 36
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEI--PHWKIL 71
+ D +++GAGP G A RL++I P W I+
Sbjct: 5 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 36
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEI--PHWKIL 71
+ D +++GAGP G A RL++I P W I+
Sbjct: 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 40
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEI--PHWKIL 71
+ D +++GAGP G A RL++I P W I+
Sbjct: 5 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 36
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILS 95
+E + ++VGAGPGG A R +++ K+ ++E G+ +++ + + ++S
Sbjct: 2 IETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNLGGVCLNVGCIPSKALIS 54
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEI--PHWKIL 71
+ D +++GAGP G A RL++I P W I+
Sbjct: 5 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 36
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEI--PHWKIL 71
+ D +++GAGP G A RL++I P W I+
Sbjct: 5 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 36
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 LEYDFIIVGAGPGGCTVANRLSEI--PHWKIL 71
+ D +++GAGP G A RL++I P W I+
Sbjct: 5 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIV 36
>pdb|2I52|A Chain A, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|B Chain B, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|C Chain C, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|D Chain D, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|E Chain E, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|F Chain F, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
Length = 121
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 198 TPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIK------K 251
T + AF +AG++ G Y G A R + + +++ ++ K
Sbjct: 13 TDIQRAFFEAGIKLGAIFHQYTG-IPVNSENASMAEEFIERSTMIQPFVENVRISINNVK 71
Query: 252 RCNLTVKDSSFVKK-----ILIDPVTKKACGVLATIKGIDHKILARKEVI 296
R + T SS +K +LI+ KK GVL +G+D+ ++ KEV+
Sbjct: 72 RSSGTYSYSSLNEKMLHAEVLINYNGKKVLGVLNYDEGLDYPVMYAKEVL 121
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 43 EYDFIIVGAGPGGCTVANRLSEI 65
E D +IVGAGP G + A RL ++
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQL 57
>pdb|3B9T|A Chain A, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|B Chain B, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|C Chain C, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|D Chain D, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
Length = 484
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 154 NYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY 213
N+G+ YNE++ KK E + I EL + G + + Y TP D F +
Sbjct: 207 NWGFHYNELIEEPKKREVVTIYELDAT---GERNWARAFYNYRWTPQKDPFGVV-----H 258
Query: 214 PLVDYNG 220
P+VDY G
Sbjct: 259 PIVDYPG 265
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 33 SSNKDQDLLLEYDFIIVGAGPGGCTVA 59
+ NK ++ +YD++++G GPGG A
Sbjct: 32 TKNKVEEHTYDYDYVVIGGGPGGMASA 58
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 541 HHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASD 600
+H G C +G D +V G NL V D S+IP G + + +AE+ +
Sbjct: 441 YHPLGGCVLGK------ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 601 MIKK 604
I K
Sbjct: 495 RIIK 498
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 541 HHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASD 600
+H G C +G D +V G NL V D S+IP G + + +AE+ +
Sbjct: 441 YHPLGGCVLGK------ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 601 MIKK 604
I K
Sbjct: 495 RIIK 498
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 541 HHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASD 600
+H G C +G D +V G NL V D S+IP G + + +AE+ +
Sbjct: 439 YHPLGGCVLGK------ATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 492
Query: 601 MIKK 604
I K
Sbjct: 493 RIIK 496
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 535 HITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 579
++ Q+H+ C T + WD+ ++ Q VYGV + ++ D ++
Sbjct: 437 NVLEQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKLRDMGVV 481
>pdb|3TX0|A Chain A, Unphosphorylated Bacillus Cereus Phosphopentomutase In A
P212121 Crystal Form
Length = 399
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 317 EHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGK 376
EH+N L +P + L +G N++E M G++ V +P+G + + +
Sbjct: 44 EHMNGLQMPNMVKLGLG-NIRE---MKGIS-KVEKPLGY------------YTKMQEKST 86
Query: 377 GKLTMLG---CEGLAYVNTKYNVFPDDLP 402
GK TM G GL Y++T + VFP+ P
Sbjct: 87 GKDTMTGHWEIMGL-YIDTPFQVFPEGFP 114
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 44 YDFIIVGAGPGGCTVANRLSEI 65
YD +++GAGPGG A R +++
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQL 23
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLE 74
YD+IIVG+G G AN L ++ + K+L++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIE 31
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 533 VRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVD 575
++HI H+ CG CK G W K GV NL + D
Sbjct: 95 IKHILVCGHYNCGACKAGLVW--------HPKTAGVTNLWISD 129
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 45/227 (19%)
Query: 124 GKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLP----------YFKKAER-I 172
G+GVGG SL+N + KRNY + E+LP YF +A +
Sbjct: 109 GRGVGGGSLVNGGMAVT-PKRNY------------FEEILPSVDSNEMYNKYFPRANTGL 155
Query: 173 QISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGK------TQTGF 226
++ + + + T+ + T T F A + Y +Y K T++G
Sbjct: 156 GVNNIDQAWFESTE-WYKFARTGRKTAQRSGFTTAFVPNVYDF-EYMKKEAAGQVTKSGL 213
Query: 227 ARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGID 286
+ ++S K Y+ LT+ V K+ P T G T++ ID
Sbjct: 214 GGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVA--PAT--GSGYSVTMEQID 269
Query: 287 H-------KILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV 326
K++ V +AG+ + KLL+ + Q HL +L+ V
Sbjct: 270 EQGNVVATKVVTADRVFFAAGSVGTSKLLV--SMKAQGHLPNLSSQV 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,233,182
Number of Sequences: 62578
Number of extensions: 841034
Number of successful extensions: 2201
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 121
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)