Query psy754
Match_columns 610
No_of_seqs 224 out of 2163
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 20:58:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 3.5E-95 8E-100 751.0 45.0 568 36-610 50-620 (623)
2 PRK02106 choline dehydrogenase 100.0 6E-79 1.3E-83 666.0 50.5 525 40-607 2-536 (560)
3 TIGR01810 betA choline dehydro 100.0 6.5E-78 1.4E-82 654.6 50.5 520 45-606 1-530 (532)
4 COG2303 BetA Choline dehydroge 100.0 1.1E-70 2.4E-75 591.5 39.2 525 39-605 3-536 (542)
5 PLN02785 Protein HOTHEAD 100.0 1.1E-66 2.4E-71 563.2 42.1 504 40-609 52-583 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 2.3E-53 4.9E-58 449.7 33.8 487 44-606 1-543 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 1.1E-45 2.3E-50 374.1 17.0 288 44-341 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 3.5E-33 7.6E-38 250.8 12.8 143 454-598 1-144 (144)
9 PRK12835 3-ketosteroid-delta-1 99.5 2.1E-13 4.6E-18 149.4 15.2 63 246-309 219-281 (584)
10 PRK07121 hypothetical protein; 99.5 3.3E-13 7.1E-18 146.1 15.1 64 246-310 183-246 (492)
11 PRK12837 3-ketosteroid-delta-1 99.5 3.9E-13 8.4E-18 145.7 14.1 63 245-309 179-241 (513)
12 PRK12845 3-ketosteroid-delta-1 99.5 4.6E-13 9.9E-18 145.8 14.3 60 248-309 225-284 (564)
13 PF00890 FAD_binding_2: FAD bi 99.5 8E-13 1.7E-17 140.5 15.2 58 248-309 149-208 (417)
14 PRK06481 fumarate reductase fl 99.5 1.2E-12 2.7E-17 141.6 16.4 59 248-309 198-257 (506)
15 PRK08274 tricarballylate dehyd 99.4 4.3E-13 9.4E-18 144.4 12.6 64 248-314 139-203 (466)
16 PRK12844 3-ketosteroid-delta-1 99.4 5.1E-13 1.1E-17 145.9 12.9 60 248-309 216-275 (557)
17 PRK06175 L-aspartate oxidase; 99.4 5.3E-12 1.1E-16 133.8 16.5 52 250-304 139-190 (433)
18 PRK11101 glpA sn-glycerol-3-ph 99.4 7.3E-12 1.6E-16 136.7 17.6 61 249-313 158-220 (546)
19 TIGR01373 soxB sarcosine oxida 99.4 4.1E-12 8.9E-17 134.6 14.7 64 15-78 2-66 (407)
20 PTZ00139 Succinate dehydrogena 99.4 5.7E-12 1.2E-16 139.0 15.7 55 248-304 174-230 (617)
21 PRK12834 putative FAD-binding 99.4 7.9E-12 1.7E-16 136.8 16.0 37 40-77 1-37 (549)
22 PF01266 DAO: FAD dependent ox 99.4 5.6E-12 1.2E-16 131.0 13.4 58 248-313 155-212 (358)
23 PRK06452 sdhA succinate dehydr 99.4 1.2E-11 2.6E-16 135.4 16.0 53 248-303 144-198 (566)
24 PRK07843 3-ketosteroid-delta-1 99.3 9.9E-12 2.1E-16 135.9 14.9 62 248-311 216-277 (557)
25 PRK08958 sdhA succinate dehydr 99.3 1.8E-11 3.9E-16 134.4 16.3 55 248-304 151-207 (588)
26 PRK07395 L-aspartate oxidase; 99.3 6.2E-12 1.3E-16 136.8 12.6 53 251-304 146-198 (553)
27 PLN02815 L-aspartate oxidase 99.3 1.1E-11 2.5E-16 135.3 13.4 53 251-304 167-223 (594)
28 PLN00128 Succinate dehydrogena 99.3 3.4E-11 7.4E-16 132.8 16.9 55 248-304 195-251 (635)
29 PRK09078 sdhA succinate dehydr 99.3 3.4E-11 7.5E-16 132.6 16.5 55 248-304 157-213 (598)
30 PRK07573 sdhA succinate dehydr 99.3 3.7E-11 8.1E-16 132.9 16.7 53 249-304 179-233 (640)
31 PRK07804 L-aspartate oxidase; 99.3 1.9E-11 4.1E-16 133.2 13.7 55 248-304 152-211 (541)
32 TIGR01813 flavo_cyto_c flavocy 99.3 3.3E-11 7.1E-16 128.9 14.6 62 246-309 136-198 (439)
33 PRK05945 sdhA succinate dehydr 99.3 4.2E-11 9.2E-16 131.6 15.7 54 248-304 143-198 (575)
34 PRK06134 putative FAD-binding 99.3 3.9E-11 8.3E-16 132.0 15.0 60 248-309 225-284 (581)
35 PRK12839 hypothetical protein; 99.3 3.5E-11 7.7E-16 131.5 14.6 61 248-309 222-282 (572)
36 PRK12843 putative FAD-binding 99.3 3.5E-11 7.6E-16 132.2 14.6 61 248-310 229-289 (578)
37 PRK12842 putative succinate de 99.3 3.3E-11 7.2E-16 132.5 13.8 60 248-309 222-281 (574)
38 TIGR00551 nadB L-aspartate oxi 99.3 3.1E-11 6.8E-16 130.3 13.1 54 248-304 136-190 (488)
39 PRK12409 D-amino acid dehydrog 99.3 4E-11 8.7E-16 127.2 13.4 35 44-79 2-36 (410)
40 PRK08641 sdhA succinate dehydr 99.3 1.1E-10 2.3E-15 128.5 16.9 49 254-304 151-201 (589)
41 PRK06263 sdhA succinate dehydr 99.3 4.5E-11 9.8E-16 130.7 13.7 55 248-304 142-198 (543)
42 COG0578 GlpA Glycerol-3-phosph 99.3 7.7E-11 1.7E-15 123.7 14.4 61 249-314 173-235 (532)
43 PRK08626 fumarate reductase fl 99.3 6.3E-11 1.4E-15 131.4 14.6 54 248-304 166-221 (657)
44 PTZ00306 NADH-dependent fumara 99.3 6.4E-11 1.4E-15 139.5 15.5 54 252-306 559-623 (1167)
45 COG0579 Predicted dehydrogenas 99.2 3.5E-11 7.7E-16 123.7 11.5 205 42-315 2-222 (429)
46 PRK07803 sdhA succinate dehydr 99.2 9.6E-11 2.1E-15 129.7 15.4 48 255-305 166-215 (626)
47 TIGR01176 fum_red_Fp fumarate 99.2 5.2E-11 1.1E-15 130.4 13.2 51 251-304 144-196 (580)
48 TIGR01812 sdhA_frdA_Gneg succi 99.2 1.1E-10 2.4E-15 128.6 15.7 54 248-304 137-192 (566)
49 PRK09231 fumarate reductase fl 99.2 1.4E-10 3E-15 127.4 16.3 51 251-304 145-197 (582)
50 COG2081 Predicted flavoprotein 99.2 7.9E-11 1.7E-15 117.2 12.9 89 202-307 82-171 (408)
51 PRK06069 sdhA succinate dehydr 99.2 5.1E-11 1.1E-15 131.2 12.8 51 251-304 149-201 (577)
52 PRK06854 adenylylsulfate reduc 99.2 1.3E-10 2.8E-15 128.2 16.0 52 249-303 141-195 (608)
53 PRK08205 sdhA succinate dehydr 99.2 1.8E-10 4E-15 126.7 16.4 58 246-304 146-207 (583)
54 PRK09077 L-aspartate oxidase; 99.2 7.9E-11 1.7E-15 128.4 13.2 54 250-304 149-208 (536)
55 PTZ00383 malate:quinone oxidor 99.2 1.8E-10 4E-15 122.9 15.5 54 253-314 228-283 (497)
56 TIGR03329 Phn_aa_oxid putative 99.2 3.8E-11 8.3E-16 128.9 10.4 36 42-78 23-60 (460)
57 PF03486 HI0933_like: HI0933-l 99.2 2E-11 4.3E-16 127.0 7.6 91 202-307 80-170 (409)
58 PRK07057 sdhA succinate dehydr 99.2 3.1E-10 6.8E-15 124.8 17.2 55 248-304 156-212 (591)
59 TIGR01377 soxA_mon sarcosine o 99.2 2.6E-10 5.7E-15 119.7 15.9 34 44-78 1-34 (380)
60 PRK08275 putative oxidoreducta 99.2 3.1E-10 6.7E-15 124.4 15.6 56 246-303 143-200 (554)
61 PRK08071 L-aspartate oxidase; 99.2 4.5E-10 9.8E-15 121.6 15.9 49 253-304 142-191 (510)
62 PRK11728 hydroxyglutarate oxid 99.2 4.3E-10 9.3E-15 118.5 15.3 57 248-313 157-213 (393)
63 PRK00711 D-amino acid dehydrog 99.2 3.3E-10 7.2E-15 120.5 14.3 57 248-312 209-265 (416)
64 PRK04176 ribulose-1,5-biphosph 99.2 2.2E-10 4.7E-15 112.3 11.5 35 43-78 25-59 (257)
65 PRK07512 L-aspartate oxidase; 99.1 5.6E-10 1.2E-14 121.0 15.5 50 252-304 149-198 (513)
66 TIGR01811 sdhA_Bsu succinate d 99.1 2.5E-10 5.3E-15 125.7 11.9 52 251-304 144-197 (603)
67 PLN02464 glycerol-3-phosphate 99.1 4.2E-10 9E-15 124.4 13.7 63 248-312 240-304 (627)
68 PRK13800 putative oxidoreducta 99.1 1E-09 2.2E-14 126.6 17.3 50 252-304 155-206 (897)
69 TIGR00292 thiazole biosynthesi 99.1 4E-10 8.6E-15 110.1 11.3 35 43-78 21-55 (254)
70 COG1635 THI4 Ribulose 1,5-bisp 99.1 2.7E-10 5.9E-15 103.5 9.0 35 43-78 30-64 (262)
71 PLN02661 Putative thiazole syn 99.1 4.8E-10 1E-14 112.3 11.4 55 245-302 178-243 (357)
72 TIGR02061 aprA adenosine phosp 99.1 1.9E-09 4.1E-14 118.0 16.4 53 250-303 136-191 (614)
73 TIGR01320 mal_quin_oxido malat 99.1 1.3E-09 2.9E-14 116.7 14.1 63 248-314 186-250 (483)
74 TIGR03364 HpnW_proposed FAD de 99.1 1.7E-09 3.7E-14 112.9 14.3 34 44-78 1-34 (365)
75 KOG2820|consensus 99.1 7.4E-10 1.6E-14 106.9 10.4 61 246-311 159-219 (399)
76 PF01946 Thi4: Thi4 family; PD 99.1 1E-09 2.3E-14 100.6 10.9 35 43-78 17-51 (230)
77 PRK11259 solA N-methyltryptoph 99.1 1.2E-09 2.5E-14 114.7 12.5 35 43-78 3-37 (376)
78 PRK13369 glycerol-3-phosphate 99.1 1.2E-09 2.6E-14 118.5 12.7 57 248-309 163-220 (502)
79 PRK05257 malate:quinone oxidor 99.0 2.3E-09 5.1E-14 114.9 14.4 38 42-79 4-42 (494)
80 PRK12266 glpD glycerol-3-phosp 99.0 1.8E-09 3.9E-14 117.0 13.4 40 40-80 3-42 (508)
81 PRK13339 malate:quinone oxidor 99.0 9.5E-09 2.1E-13 109.4 17.7 60 251-314 196-257 (497)
82 TIGR02485 CobZ_N-term precorri 99.0 1.1E-09 2.4E-14 116.7 10.7 60 248-310 131-190 (432)
83 COG3573 Predicted oxidoreducta 99.0 6.9E-10 1.5E-14 106.5 7.9 81 246-329 159-259 (552)
84 COG0029 NadB Aspartate oxidase 99.0 8E-10 1.7E-14 112.7 8.8 100 201-303 89-196 (518)
85 PRK08401 L-aspartate oxidase; 99.0 6.9E-09 1.5E-13 111.4 14.9 49 248-304 128-176 (466)
86 COG1053 SdhA Succinate dehydro 98.9 4.9E-09 1.1E-13 113.1 12.3 51 251-303 150-202 (562)
87 PF12831 FAD_oxidored: FAD dep 98.9 7.9E-10 1.7E-14 117.3 5.7 63 245-313 95-157 (428)
88 PRK10157 putative oxidoreducta 98.9 4.1E-09 9E-14 111.9 8.7 36 43-79 5-40 (428)
89 KOG0042|consensus 98.9 2.9E-09 6.3E-14 108.7 6.2 87 219-311 206-294 (680)
90 PTZ00363 rab-GDP dissociation 98.8 1.7E-08 3.6E-13 106.4 11.4 41 40-81 1-41 (443)
91 PRK05192 tRNA uridine 5-carbox 98.8 1.2E-08 2.6E-13 109.6 10.5 35 42-77 3-37 (618)
92 PRK01747 mnmC bifunctional tRN 98.8 2.2E-08 4.8E-13 112.5 11.6 35 43-78 260-294 (662)
93 COG0644 FixC Dehydrogenases (f 98.8 2.5E-08 5.5E-13 105.0 10.5 38 42-80 2-39 (396)
94 PRK10015 oxidoreductase; Provi 98.8 2.1E-08 4.5E-13 106.4 9.8 37 42-79 4-40 (429)
95 COG0665 DadA Glycine/D-amino a 98.8 3.3E-08 7.2E-13 104.1 11.2 38 41-79 2-39 (387)
96 PRK13977 myosin-cross-reactive 98.8 8.9E-08 1.9E-12 102.1 14.2 56 249-304 235-294 (576)
97 KOG2844|consensus 98.8 1.7E-08 3.7E-13 105.5 8.3 201 39-313 35-252 (856)
98 PRK07364 2-octaprenyl-6-methox 98.7 9.7E-08 2.1E-12 101.6 13.1 42 37-79 12-53 (415)
99 PRK06185 hypothetical protein; 98.7 1.4E-07 3E-12 100.0 13.7 58 251-313 120-177 (407)
100 COG1233 Phytoene dehydrogenase 98.7 3E-08 6.5E-13 106.9 8.6 38 43-81 3-40 (487)
101 TIGR02730 carot_isom carotene 98.7 1E-07 2.2E-12 103.5 11.9 55 248-308 237-291 (493)
102 PF01134 GIDA: Glucose inhibit 98.7 3.5E-08 7.6E-13 100.7 7.5 51 250-307 106-156 (392)
103 KOG2415|consensus 98.6 1.1E-07 2.4E-12 94.3 9.2 84 240-325 183-280 (621)
104 PF13738 Pyr_redox_3: Pyridine 98.6 7.4E-08 1.6E-12 91.5 7.8 60 245-311 87-146 (203)
105 KOG2853|consensus 98.6 1.2E-06 2.6E-11 84.9 15.5 42 39-80 82-126 (509)
106 PF06039 Mqo: Malate:quinone o 98.6 4.6E-07 9.9E-12 92.6 12.0 66 245-314 187-254 (488)
107 KOG4254|consensus 98.6 2.3E-07 4.9E-12 93.2 9.6 69 234-309 259-327 (561)
108 PRK07208 hypothetical protein; 98.6 1.2E-06 2.7E-11 94.9 16.3 41 40-81 1-41 (479)
109 PLN02172 flavin-containing mon 98.6 3.1E-07 6.7E-12 97.9 10.6 40 40-80 7-46 (461)
110 TIGR00275 flavoprotein, HI0933 98.6 1.3E-07 2.9E-12 99.4 7.7 32 47-79 1-32 (400)
111 PLN02985 squalene monooxygenas 98.5 9.3E-07 2E-11 95.7 14.0 38 39-77 39-76 (514)
112 COG3380 Predicted NAD/FAD-depe 98.5 5E-07 1.1E-11 85.1 10.2 35 44-79 2-36 (331)
113 TIGR02734 crtI_fam phytoene de 98.5 8.1E-08 1.8E-12 104.7 5.7 56 248-309 227-282 (502)
114 TIGR02032 GG-red-SF geranylger 98.5 5.6E-07 1.2E-11 90.8 11.3 35 44-79 1-35 (295)
115 PRK08773 2-octaprenyl-3-methyl 98.5 7.6E-07 1.6E-11 93.9 12.6 37 41-78 4-40 (392)
116 PRK08244 hypothetical protein; 98.5 1.2E-06 2.6E-11 95.3 14.1 35 43-78 2-36 (493)
117 KOG2404|consensus 98.5 3.4E-07 7.4E-12 87.9 8.5 49 254-305 159-208 (477)
118 KOG1298|consensus 98.5 3.2E-07 7E-12 90.3 7.8 51 249-303 157-208 (509)
119 PF01494 FAD_binding_3: FAD bi 98.5 2.4E-07 5.1E-12 96.1 6.6 36 43-79 1-36 (356)
120 PRK06126 hypothetical protein; 98.4 3E-06 6.4E-11 93.4 15.2 36 42-78 6-41 (545)
121 TIGR02023 BchP-ChlP geranylger 98.4 9.9E-07 2.1E-11 92.8 10.5 32 44-76 1-32 (388)
122 PRK06847 hypothetical protein; 98.4 2E-06 4.2E-11 90.2 12.7 38 40-78 1-38 (375)
123 PRK06184 hypothetical protein; 98.4 1.9E-06 4.2E-11 93.8 12.4 36 43-79 3-38 (502)
124 PRK11445 putative oxidoreducta 98.4 4.9E-06 1.1E-10 86.2 14.8 34 43-78 1-34 (351)
125 COG2509 Uncharacterized FAD-de 98.4 3E-06 6.6E-11 85.9 12.6 54 248-307 181-234 (486)
126 PRK07045 putative monooxygenas 98.4 2.7E-06 5.9E-11 89.5 13.1 37 42-79 4-40 (388)
127 PRK08243 4-hydroxybenzoate 3-m 98.4 1.9E-06 4.1E-11 90.8 11.9 35 43-78 2-36 (392)
128 PRK05329 anaerobic glycerol-3- 98.4 5E-07 1.1E-11 94.6 7.0 59 246-308 265-323 (422)
129 PRK09126 hypothetical protein; 98.4 6.9E-06 1.5E-10 86.6 15.6 35 43-78 3-37 (392)
130 KOG2665|consensus 98.4 2.2E-06 4.8E-11 82.3 10.3 210 40-313 45-266 (453)
131 COG0654 UbiH 2-polyprenyl-6-me 98.4 3E-06 6.4E-11 89.1 12.3 33 43-76 2-34 (387)
132 TIGR03378 glycerol3P_GlpB glyc 98.4 4.9E-06 1.1E-10 86.1 13.5 60 248-311 271-330 (419)
133 PRK07190 hypothetical protein; 98.4 2.3E-06 5E-11 92.2 11.7 35 43-78 5-39 (487)
134 TIGR02028 ChlP geranylgeranyl 98.4 2.9E-06 6.3E-11 89.3 11.9 33 44-77 1-33 (398)
135 COG0445 GidA Flavin-dependent 98.3 8E-07 1.7E-11 91.9 6.9 52 250-307 111-162 (621)
136 PRK06183 mhpA 3-(3-hydroxyphen 98.3 5.1E-06 1.1E-10 91.2 13.9 38 41-79 8-45 (538)
137 PRK06834 hypothetical protein; 98.3 7.2E-06 1.6E-10 88.5 14.4 35 43-78 3-37 (488)
138 PRK05675 sdhA succinate dehydr 98.3 6.8E-06 1.5E-10 90.4 14.3 55 248-304 134-190 (570)
139 PRK07333 2-octaprenyl-6-methox 98.3 5.6E-06 1.2E-10 87.6 13.2 35 43-78 1-37 (403)
140 PLN02697 lycopene epsilon cycl 98.3 2.8E-06 6E-11 91.6 10.8 34 42-76 107-140 (529)
141 TIGR00136 gidA glucose-inhibit 98.3 2.6E-06 5.7E-11 91.7 10.5 33 44-77 1-33 (617)
142 TIGR01988 Ubi-OHases Ubiquinon 98.3 4.2E-06 9.1E-11 88.0 11.4 34 45-79 1-34 (385)
143 TIGR01984 UbiH 2-polyprenyl-6- 98.3 8E-06 1.7E-10 85.8 12.6 34 45-79 1-35 (382)
144 PRK05732 2-octaprenyl-6-methox 98.3 1.2E-05 2.7E-10 84.8 14.2 33 43-76 3-38 (395)
145 PRK08132 FAD-dependent oxidore 98.3 8E-06 1.7E-10 90.0 13.1 37 41-78 21-57 (547)
146 TIGR03377 glycerol3P_GlpA glyc 98.3 9.2E-06 2E-10 88.7 13.4 62 248-313 136-199 (516)
147 PF13450 NAD_binding_8: NAD(P) 98.2 8.9E-07 1.9E-11 67.4 3.6 32 48-80 1-32 (68)
148 PRK08163 salicylate hydroxylas 98.2 9E-06 1.9E-10 85.9 12.0 37 41-78 2-38 (396)
149 PRK07588 hypothetical protein; 98.2 1.7E-05 3.7E-10 83.6 13.9 33 45-78 2-34 (391)
150 COG2072 TrkA Predicted flavopr 98.2 7.6E-06 1.6E-10 86.9 10.9 40 40-80 5-45 (443)
151 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 1.9E-05 4.1E-10 83.1 13.5 35 43-78 2-36 (390)
152 KOG2852|consensus 98.2 1.1E-06 2.3E-11 83.5 3.3 64 245-313 153-217 (380)
153 PRK06617 2-octaprenyl-6-methox 98.2 1.8E-05 3.9E-10 82.8 12.9 34 44-78 2-35 (374)
154 PRK07236 hypothetical protein; 98.1 4.7E-05 1E-09 80.1 15.3 35 43-78 6-40 (386)
155 PRK07538 hypothetical protein; 98.1 1.7E-05 3.7E-10 84.2 11.9 33 45-78 2-34 (413)
156 PF00743 FMO-like: Flavin-bind 98.1 1.1E-05 2.4E-10 87.3 9.5 36 45-81 3-38 (531)
157 TIGR02352 thiamin_ThiO glycine 98.1 8.4E-06 1.8E-10 84.0 8.1 52 248-307 145-196 (337)
158 TIGR01816 sdhA_forward succina 98.1 1.8E-05 4E-10 87.0 11.1 54 248-304 127-182 (565)
159 PLN00093 geranylgeranyl diphos 98.1 3.8E-06 8.2E-11 89.5 5.0 40 37-77 33-72 (450)
160 COG0562 Glf UDP-galactopyranos 98.0 7.4E-06 1.6E-10 79.3 4.5 38 43-81 1-38 (374)
161 PRK06116 glutathione reductase 97.9 7.4E-06 1.6E-10 88.0 4.2 36 40-76 1-36 (450)
162 PRK06475 salicylate hydroxylas 97.9 8.7E-05 1.9E-09 78.4 11.8 33 45-78 4-36 (400)
163 PRK07494 2-octaprenyl-6-methox 97.9 1.1E-05 2.4E-10 84.9 4.7 36 42-78 6-41 (388)
164 PRK08020 ubiF 2-octaprenyl-3-m 97.9 1.1E-05 2.3E-10 85.2 4.3 36 42-78 4-39 (391)
165 PRK07608 ubiquinone biosynthes 97.9 1.1E-05 2.4E-10 84.9 4.4 36 43-79 5-40 (388)
166 PRK08013 oxidoreductase; Provi 97.9 1.1E-05 2.4E-10 85.2 4.2 35 43-78 3-37 (400)
167 PF04820 Trp_halogenase: Trypt 97.9 9.6E-06 2.1E-10 86.5 3.6 52 244-301 158-209 (454)
168 PLN02463 lycopene beta cyclase 97.8 1.3E-05 2.9E-10 85.0 4.5 36 42-78 27-62 (447)
169 PRK05976 dihydrolipoamide dehy 97.8 1.2E-05 2.7E-10 86.7 4.4 37 40-77 1-37 (472)
170 PRK06370 mercuric reductase; V 97.8 1.3E-05 2.9E-10 86.3 4.4 37 40-77 2-38 (463)
171 TIGR01421 gluta_reduc_1 glutat 97.8 1.3E-05 2.9E-10 85.8 4.1 34 43-77 2-35 (450)
172 KOG1399|consensus 97.8 6.7E-05 1.5E-09 78.8 9.1 37 43-80 6-42 (448)
173 PRK05714 2-octaprenyl-3-methyl 97.8 1.5E-05 3.3E-10 84.4 4.3 35 43-78 2-36 (405)
174 TIGR00031 UDP-GALP_mutase UDP- 97.8 1.8E-05 3.8E-10 81.7 4.5 37 44-81 2-38 (377)
175 PRK08010 pyridine nucleotide-d 97.8 1.6E-05 3.4E-10 85.2 4.3 36 42-78 2-37 (441)
176 TIGR03143 AhpF_homolog putativ 97.8 1.6E-05 3.5E-10 87.3 4.3 37 40-77 1-37 (555)
177 KOG0029|consensus 97.8 1.9E-05 4.1E-10 84.4 4.5 39 42-81 14-52 (501)
178 COG0492 TrxB Thioredoxin reduc 97.8 2E-05 4.2E-10 79.0 4.2 35 42-77 2-37 (305)
179 PRK06467 dihydrolipoamide dehy 97.8 2E-05 4.4E-10 84.9 4.6 40 40-80 1-40 (471)
180 PRK08849 2-octaprenyl-3-methyl 97.8 2E-05 4.2E-10 82.9 4.2 34 43-77 3-36 (384)
181 PLN02576 protoporphyrinogen ox 97.8 2.3E-05 4.9E-10 85.4 4.7 42 39-81 8-50 (496)
182 TIGR01424 gluta_reduc_2 glutat 97.8 1.9E-05 4.2E-10 84.5 3.9 33 43-76 2-34 (446)
183 PRK07251 pyridine nucleotide-d 97.7 2.2E-05 4.7E-10 84.1 4.2 35 43-78 3-37 (438)
184 PRK08850 2-octaprenyl-6-methox 97.7 2.2E-05 4.8E-10 83.1 4.1 34 42-76 3-36 (405)
185 PRK05249 soluble pyridine nucl 97.7 2.5E-05 5.4E-10 84.2 4.5 38 42-80 4-41 (461)
186 PRK07818 dihydrolipoamide dehy 97.7 2.4E-05 5.1E-10 84.4 4.2 35 42-77 3-37 (466)
187 TIGR02733 desat_CrtD C-3',4' d 97.7 2.5E-05 5.3E-10 85.0 4.4 57 248-307 240-298 (492)
188 PRK09897 hypothetical protein; 97.7 0.00036 7.7E-09 75.5 13.1 37 44-80 2-39 (534)
189 PF05834 Lycopene_cycl: Lycope 97.7 2.8E-05 6.1E-10 81.2 4.3 34 45-79 1-36 (374)
190 PRK06115 dihydrolipoamide dehy 97.7 2.8E-05 6E-10 83.8 4.1 36 43-79 3-38 (466)
191 PTZ00367 squalene epoxidase; P 97.7 3.2E-05 7E-10 84.4 4.5 35 42-77 32-66 (567)
192 TIGR01790 carotene-cycl lycope 97.7 3.1E-05 6.8E-10 81.5 4.4 34 45-79 1-34 (388)
193 PRK06327 dihydrolipoamide dehy 97.7 3.1E-05 6.7E-10 83.7 4.1 34 41-75 2-35 (475)
194 PTZ00052 thioredoxin reductase 97.7 3.2E-05 6.9E-10 83.9 4.1 36 40-76 2-37 (499)
195 PRK06416 dihydrolipoamide dehy 97.7 3.2E-05 6.9E-10 83.4 4.1 35 42-77 3-37 (462)
196 TIGR01350 lipoamide_DH dihydro 97.7 3.8E-05 8.2E-10 82.9 4.4 35 43-79 1-35 (461)
197 PLN02268 probable polyamine ox 97.7 3.8E-05 8.3E-10 82.2 4.4 36 45-81 2-37 (435)
198 KOG2311|consensus 97.6 0.00011 2.5E-09 74.6 7.0 35 41-76 26-60 (679)
199 TIGR01292 TRX_reduct thioredox 97.6 4.4E-05 9.5E-10 77.2 3.9 33 44-77 1-33 (300)
200 TIGR00562 proto_IX_ox protopor 97.6 4.7E-05 1E-09 82.2 4.3 38 43-81 2-43 (462)
201 PRK07233 hypothetical protein; 97.6 4.8E-05 1E-09 81.4 4.3 36 45-81 1-36 (434)
202 PRK06292 dihydrolipoamide dehy 97.6 4.8E-05 1E-09 82.0 4.2 34 42-76 2-35 (460)
203 TIGR02053 MerA mercuric reduct 97.6 4.5E-05 9.9E-10 82.2 4.0 33 44-77 1-33 (463)
204 PRK11883 protoporphyrinogen ox 97.6 4.9E-05 1.1E-09 81.8 4.2 36 45-81 2-39 (451)
205 PRK14694 putative mercuric red 97.6 5.1E-05 1.1E-09 81.8 4.2 34 43-77 6-39 (468)
206 TIGR01989 COQ6 Ubiquinone bios 97.6 5.6E-05 1.2E-09 80.8 4.4 34 44-77 1-37 (437)
207 PTZ00058 glutathione reductase 97.6 7.9E-05 1.7E-09 81.3 5.5 35 42-77 47-81 (561)
208 PRK08294 phenol 2-monooxygenas 97.6 6.9E-05 1.5E-09 83.4 4.9 41 37-78 26-67 (634)
209 COG3349 Uncharacterized conser 97.6 6.4E-05 1.4E-09 78.4 4.1 35 46-81 3-37 (485)
210 TIGR01789 lycopene_cycl lycope 97.5 6.4E-05 1.4E-09 78.2 3.8 33 45-78 1-35 (370)
211 PRK13748 putative mercuric red 97.5 7E-05 1.5E-09 82.9 4.1 34 42-76 97-130 (561)
212 COG1249 Lpd Pyruvate/2-oxoglut 97.5 8.9E-05 1.9E-09 78.2 4.6 39 41-80 2-40 (454)
213 COG2907 Predicted NAD/FAD-bind 97.5 0.00078 1.7E-08 66.2 10.5 36 43-80 8-43 (447)
214 TIGR01372 soxA sarcosine oxida 97.5 0.0001 2.3E-09 86.3 5.6 62 248-313 359-421 (985)
215 COG1231 Monoamine oxidase [Ami 97.5 9.5E-05 2.1E-09 75.7 4.5 39 41-80 5-43 (450)
216 PRK06996 hypothetical protein; 97.5 9E-05 1.9E-09 78.3 4.5 37 41-78 9-49 (398)
217 PRK06753 hypothetical protein; 97.5 8.1E-05 1.7E-09 77.9 4.0 34 45-79 2-35 (373)
218 PF13434 K_oxygenase: L-lysine 97.5 0.00028 6E-09 72.3 7.7 36 43-78 2-37 (341)
219 PLN02507 glutathione reductase 97.5 8E-05 1.7E-09 80.7 3.9 34 41-75 23-56 (499)
220 PLN02568 polyamine oxidase 97.5 0.0001 2.2E-09 80.3 4.7 40 41-81 3-47 (539)
221 COG3634 AhpF Alkyl hydroperoxi 97.5 0.00067 1.4E-08 66.5 9.3 59 250-311 400-460 (520)
222 PLN02546 glutathione reductase 97.4 8.8E-05 1.9E-09 81.0 3.8 34 41-75 77-110 (558)
223 TIGR01423 trypano_reduc trypan 97.4 9.6E-05 2.1E-09 79.7 3.8 34 42-76 2-36 (486)
224 PRK14727 putative mercuric red 97.4 0.00014 3E-09 78.6 4.9 38 42-80 15-52 (479)
225 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00012 2.6E-09 75.9 4.0 35 44-79 3-37 (436)
226 PF06100 Strep_67kDa_ant: Stre 97.4 0.0036 7.8E-08 65.4 14.6 53 250-302 217-273 (500)
227 PF07992 Pyr_redox_2: Pyridine 97.4 0.00014 3E-09 68.7 4.1 33 45-78 1-33 (201)
228 PRK10262 thioredoxin reductase 97.4 0.00012 2.6E-09 74.9 3.8 35 41-76 4-38 (321)
229 PRK15317 alkyl hydroperoxide r 97.4 0.00013 2.9E-09 79.6 4.4 34 41-75 209-242 (517)
230 PLN02927 antheraxanthin epoxid 97.4 0.00015 3.2E-09 80.0 4.6 37 40-77 78-114 (668)
231 PTZ00153 lipoamide dehydrogena 97.4 0.00014 3E-09 80.7 4.5 33 43-76 116-148 (659)
232 COG1148 HdrA Heterodisulfide r 97.4 0.00016 3.4E-09 74.0 4.3 67 12-81 94-161 (622)
233 PLN02676 polyamine oxidase 97.4 0.00017 3.7E-09 77.8 4.7 39 42-81 25-64 (487)
234 PRK05868 hypothetical protein; 97.4 0.00016 3.4E-09 75.6 4.3 35 44-79 2-36 (372)
235 PRK12416 protoporphyrinogen ox 97.3 0.00017 3.8E-09 77.8 4.0 36 45-81 3-44 (463)
236 TIGR02731 phytoene_desat phyto 97.3 0.00022 4.9E-09 76.7 4.3 36 45-81 1-36 (453)
237 TIGR01438 TGR thioredoxin and 97.3 0.00021 4.5E-09 77.2 3.8 33 43-76 2-34 (484)
238 COG3075 GlpB Anaerobic glycero 97.2 0.00024 5.2E-09 69.2 3.7 36 43-79 2-37 (421)
239 TIGR03315 Se_ygfK putative sel 97.2 0.00028 6E-09 81.1 4.9 38 42-80 536-573 (1012)
240 PRK13512 coenzyme A disulfide 97.2 0.0015 3.2E-08 69.9 9.9 34 45-78 3-37 (438)
241 KOG2614|consensus 97.2 0.00031 6.8E-09 71.0 4.0 35 43-78 2-36 (420)
242 TIGR03140 AhpF alkyl hydropero 97.2 0.00029 6.4E-09 76.8 4.1 34 41-75 210-243 (515)
243 PLN02328 lysine-specific histo 97.2 0.00039 8.5E-09 78.1 5.0 39 41-80 236-274 (808)
244 COG1232 HemY Protoporphyrinoge 97.2 0.00032 7E-09 73.4 4.0 35 46-81 3-39 (444)
245 PRK12831 putative oxidoreducta 97.2 0.00041 9E-09 74.5 4.9 38 41-79 138-175 (464)
246 TIGR03197 MnmC_Cterm tRNA U-34 97.2 0.0055 1.2E-07 64.3 13.2 52 248-308 143-194 (381)
247 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00036 7.8E-09 72.8 3.9 35 44-79 1-35 (433)
248 COG1252 Ndh NADH dehydrogenase 97.1 0.01 2.2E-07 61.5 14.1 55 245-310 214-268 (405)
249 PLN02612 phytoene desaturase 97.1 0.00062 1.3E-08 75.0 5.5 38 43-81 93-130 (567)
250 PLN02529 lysine-specific histo 97.0 0.00056 1.2E-08 76.4 4.7 39 42-81 159-197 (738)
251 PF00996 GDI: GDP dissociation 97.0 0.00054 1.2E-08 71.7 4.3 41 40-81 1-41 (438)
252 PF00070 Pyr_redox: Pyridine n 97.0 0.00073 1.6E-08 53.3 4.1 34 46-80 2-35 (80)
253 TIGR02732 zeta_caro_desat caro 97.0 0.00057 1.2E-08 73.7 4.1 61 248-309 227-290 (474)
254 PRK12810 gltD glutamate syntha 97.0 0.00082 1.8E-08 72.5 4.9 38 42-80 142-179 (471)
255 TIGR03219 salicylate_mono sali 97.0 0.00067 1.5E-08 72.1 4.2 33 45-78 2-35 (414)
256 PRK12775 putative trifunctiona 97.0 0.0007 1.5E-08 79.1 4.5 38 42-80 429-466 (1006)
257 PRK12779 putative bifunctional 96.9 0.0007 1.5E-08 78.5 4.2 38 43-81 306-343 (944)
258 TIGR01316 gltA glutamate synth 96.9 0.0009 1.9E-08 71.7 4.8 37 42-79 132-168 (449)
259 PLN02487 zeta-carotene desatur 96.9 0.0012 2.7E-08 72.1 5.6 60 248-308 303-365 (569)
260 PRK06912 acoL dihydrolipoamide 96.9 0.00077 1.7E-08 72.5 4.0 33 45-78 2-34 (458)
261 KOG4716|consensus 96.9 0.00088 1.9E-08 65.4 3.6 36 41-77 17-52 (503)
262 PRK09853 putative selenate red 96.8 0.0012 2.7E-08 75.6 4.8 38 42-80 538-575 (1019)
263 PRK12769 putative oxidoreducta 96.8 0.0012 2.6E-08 74.3 4.5 38 42-80 326-363 (654)
264 PRK07846 mycothione reductase; 96.7 0.0012 2.6E-08 70.8 4.0 33 43-78 1-33 (451)
265 PRK11749 dihydropyrimidine deh 96.7 0.0016 3.5E-08 70.0 4.7 38 42-80 139-176 (457)
266 KOG1335|consensus 96.7 0.0022 4.7E-08 64.0 5.0 38 42-80 38-75 (506)
267 KOG2960|consensus 96.7 0.00069 1.5E-08 61.7 1.5 36 43-78 76-112 (328)
268 PRK12778 putative bifunctional 96.7 0.0015 3.3E-08 74.7 4.6 37 42-79 430-466 (752)
269 PLN02852 ferredoxin-NADP+ redu 96.6 0.0025 5.3E-08 68.3 5.2 39 42-80 25-64 (491)
270 PRK08255 salicylyl-CoA 5-hydro 96.6 0.0015 3.2E-08 74.7 3.7 34 45-79 2-37 (765)
271 PLN03000 amine oxidase 96.6 0.002 4.4E-08 72.6 4.5 39 42-81 183-221 (881)
272 KOG0685|consensus 96.6 0.0022 4.8E-08 66.0 4.2 39 43-81 21-59 (498)
273 TIGR03452 mycothione_red mycot 96.5 0.002 4.2E-08 69.2 4.0 33 43-78 2-34 (452)
274 PRK04965 NADH:flavorubredoxin 96.5 0.018 3.9E-07 60.3 10.9 57 250-313 193-249 (377)
275 KOG3855|consensus 96.5 0.0026 5.6E-08 64.2 4.0 38 41-78 34-74 (481)
276 PRK07845 flavoprotein disulfid 96.4 0.0024 5.1E-08 68.9 3.8 32 45-77 3-34 (466)
277 PRK12814 putative NADPH-depend 96.4 0.003 6.6E-08 70.8 4.8 38 42-80 192-229 (652)
278 PLN02976 amine oxidase 96.4 0.003 6.5E-08 73.9 4.5 39 42-81 692-730 (1713)
279 PRK06567 putative bifunctional 96.4 0.003 6.4E-08 71.8 4.3 36 42-78 382-417 (1028)
280 TIGR01318 gltD_gamma_fam gluta 96.4 0.0036 7.8E-08 67.4 4.6 38 42-80 140-177 (467)
281 PRK06416 dihydrolipoamide dehy 96.3 0.027 5.9E-07 60.7 11.4 54 250-307 223-276 (462)
282 PRK12770 putative glutamate sy 96.3 0.0043 9.3E-08 64.3 4.8 37 43-80 18-54 (352)
283 TIGR01350 lipoamide_DH dihydro 96.3 0.027 5.8E-07 60.8 11.0 34 44-78 171-204 (461)
284 PRK06370 mercuric reductase; V 96.3 0.029 6.2E-07 60.5 11.1 53 250-306 222-274 (463)
285 TIGR02053 MerA mercuric reduct 96.3 0.024 5.2E-07 61.2 10.5 33 45-78 168-200 (463)
286 TIGR01317 GOGAT_sm_gam glutama 96.3 0.0044 9.4E-08 67.1 4.7 36 43-79 143-178 (485)
287 KOG1276|consensus 96.2 0.0044 9.6E-08 62.9 4.0 39 43-82 11-51 (491)
288 PTZ00188 adrenodoxin reductase 96.2 0.0043 9.3E-08 65.6 4.1 37 44-80 40-76 (506)
289 PRK12809 putative oxidoreducta 96.2 0.0051 1.1E-07 68.9 4.9 38 42-80 309-346 (639)
290 KOG0405|consensus 96.1 0.006 1.3E-07 60.1 4.3 40 39-79 16-55 (478)
291 PRK07818 dihydrolipoamide dehy 96.1 0.04 8.6E-07 59.5 11.2 54 250-307 223-277 (466)
292 PRK13984 putative oxidoreducta 96.1 0.0076 1.6E-07 67.3 5.5 39 41-80 281-319 (604)
293 TIGR03140 AhpF alkyl hydropero 96.1 0.054 1.2E-06 59.2 12.0 55 252-309 400-456 (515)
294 PRK15317 alkyl hydroperoxide r 96.1 0.054 1.2E-06 59.3 11.9 56 252-310 399-456 (517)
295 TIGR02374 nitri_red_nirB nitri 96.0 0.032 6.9E-07 64.1 10.0 57 250-313 192-248 (785)
296 PRK12771 putative glutamate sy 95.9 0.0091 2E-07 66.0 4.9 38 42-80 136-173 (564)
297 PRK14989 nitrite reductase sub 95.9 0.042 9.1E-07 63.3 10.4 59 250-313 197-255 (847)
298 PRK06912 acoL dihydrolipoamide 95.8 0.053 1.2E-06 58.4 10.4 32 45-77 172-203 (458)
299 PRK09564 coenzyme A disulfide 95.8 0.051 1.1E-06 58.3 10.1 55 251-313 202-256 (444)
300 PRK10262 thioredoxin reductase 95.7 0.11 2.5E-06 52.9 12.1 56 250-308 195-253 (321)
301 TIGR01316 gltA glutamate synth 95.7 0.083 1.8E-06 56.6 11.3 31 45-76 274-304 (449)
302 PRK06327 dihydrolipoamide dehy 95.5 0.084 1.8E-06 57.1 10.5 52 251-306 235-287 (475)
303 PRK09754 phenylpropionate diox 95.3 0.018 3.9E-07 60.7 4.4 61 245-313 191-251 (396)
304 PRK07845 flavoprotein disulfid 95.2 0.11 2.3E-06 56.2 10.1 57 250-313 228-286 (466)
305 PRK09564 coenzyme A disulfide 95.2 0.016 3.5E-07 62.1 3.7 35 45-79 2-37 (444)
306 PRK06116 glutathione reductase 95.1 0.12 2.6E-06 55.5 10.3 51 250-306 218-268 (450)
307 PTZ00318 NADH dehydrogenase-li 95.1 0.024 5.3E-07 60.3 4.8 38 42-80 9-46 (424)
308 TIGR01292 TRX_reduct thioredox 95.1 0.22 4.7E-06 50.0 11.4 55 253-311 190-246 (300)
309 KOG4405|consensus 95.0 0.03 6.4E-07 56.5 4.5 41 40-81 5-45 (547)
310 COG0493 GltD NADPH-dependent g 95.0 0.024 5.2E-07 60.2 4.2 36 44-80 124-159 (457)
311 PRK12831 putative oxidoreducta 94.9 0.19 4.2E-06 54.0 10.9 31 45-76 283-313 (464)
312 KOG1439|consensus 94.8 0.017 3.8E-07 58.2 2.3 40 40-80 1-40 (440)
313 KOG2403|consensus 94.5 0.072 1.6E-06 56.0 6.0 37 39-76 51-87 (642)
314 COG1206 Gid NAD(FAD)-utilizing 94.5 0.03 6.5E-07 55.0 3.0 33 44-77 4-36 (439)
315 TIGR01423 trypano_reduc trypan 94.3 0.2 4.3E-06 54.2 9.5 52 250-307 241-292 (486)
316 COG5044 MRS6 RAB proteins gera 94.3 0.054 1.2E-06 54.1 4.4 37 43-80 6-42 (434)
317 TIGR01438 TGR thioredoxin and 94.3 0.22 4.8E-06 53.9 9.6 54 251-308 231-284 (484)
318 TIGR03169 Nterm_to_SelD pyridi 94.1 0.05 1.1E-06 56.6 4.3 36 45-80 1-38 (364)
319 KOG1800|consensus 94.1 0.058 1.3E-06 54.1 4.3 37 44-80 21-58 (468)
320 KOG0399|consensus 94.0 0.072 1.6E-06 60.3 5.1 42 39-81 1781-1822(2142)
321 PF02558 ApbA: Ketopantoate re 93.6 0.069 1.5E-06 47.7 3.6 31 46-77 1-31 (151)
322 PRK04965 NADH:flavorubredoxin 93.6 0.066 1.4E-06 56.1 3.9 35 44-78 3-38 (377)
323 TIGR03862 flavo_PP4765 unchara 93.5 0.22 4.7E-06 51.6 7.5 89 202-307 57-145 (376)
324 PF13454 NAD_binding_9: FAD-NA 93.4 0.069 1.5E-06 48.1 3.1 32 47-78 1-36 (156)
325 COG0446 HcaD Uncharacterized N 93.2 0.08 1.7E-06 55.9 3.8 37 43-80 136-172 (415)
326 KOG0404|consensus 92.9 0.098 2.1E-06 48.6 3.3 36 40-76 5-40 (322)
327 KOG2755|consensus 92.8 0.083 1.8E-06 50.3 2.8 33 46-78 2-35 (334)
328 TIGR01372 soxA sarcosine oxida 92.5 0.79 1.7E-05 54.2 11.1 32 45-77 319-351 (985)
329 KOG3851|consensus 92.5 0.12 2.7E-06 50.6 3.5 40 39-78 35-75 (446)
330 COG0569 TrkA K+ transport syst 92.4 0.13 2.7E-06 49.5 3.7 33 45-78 2-34 (225)
331 PRK09754 phenylpropionate diox 92.2 0.14 3E-06 54.0 4.0 34 45-79 146-179 (396)
332 PF01210 NAD_Gly3P_dh_N: NAD-d 92.2 0.14 3E-06 46.1 3.4 31 46-77 2-32 (157)
333 PF03721 UDPG_MGDP_dh_N: UDP-g 91.8 0.17 3.6E-06 47.0 3.6 32 46-78 3-34 (185)
334 PRK05976 dihydrolipoamide dehy 91.7 0.16 3.5E-06 54.9 3.9 34 45-79 182-215 (472)
335 PF02737 3HCDH_N: 3-hydroxyacy 91.5 0.19 4.1E-06 46.4 3.6 31 46-77 2-32 (180)
336 PRK05708 2-dehydropantoate 2-r 91.5 0.19 4.1E-06 50.8 3.9 32 45-77 4-35 (305)
337 PRK07251 pyridine nucleotide-d 91.4 0.19 4.1E-06 53.8 4.0 34 45-79 159-192 (438)
338 KOG1336|consensus 91.3 0.97 2.1E-05 47.2 8.6 57 249-310 264-320 (478)
339 COG4529 Uncharacterized protei 90.9 0.27 5.9E-06 51.4 4.3 37 44-80 2-40 (474)
340 PRK06467 dihydrolipoamide dehy 90.8 0.24 5.2E-06 53.5 4.1 34 45-79 176-209 (471)
341 PRK07846 mycothione reductase; 90.8 0.24 5.2E-06 53.1 4.0 34 45-79 168-201 (451)
342 TIGR01421 gluta_reduc_1 glutat 90.6 0.25 5.5E-06 53.0 4.0 34 45-79 168-201 (450)
343 COG1249 Lpd Pyruvate/2-oxoglut 90.4 0.32 6.9E-06 51.7 4.5 35 45-80 175-209 (454)
344 COG1252 Ndh NADH dehydrogenase 90.4 0.21 4.6E-06 51.9 3.0 38 43-80 155-204 (405)
345 TIGR02733 desat_CrtD C-3',4' d 90.4 0.44 9.5E-06 51.9 5.7 37 44-81 2-38 (492)
346 PF01593 Amino_oxidase: Flavin 90.2 0.19 4.2E-06 53.1 2.7 46 250-302 219-264 (450)
347 PRK08644 thiamine biosynthesis 90.2 0.3 6.5E-06 46.4 3.7 56 9-77 6-62 (212)
348 PRK06249 2-dehydropantoate 2-r 90.1 0.29 6.2E-06 49.8 3.7 32 45-77 7-38 (313)
349 PF13738 Pyr_redox_3: Pyridine 90.1 0.33 7.1E-06 45.6 3.9 34 43-77 167-200 (203)
350 PRK04148 hypothetical protein; 90.1 0.39 8.6E-06 41.5 3.9 32 45-78 19-50 (134)
351 PRK06115 dihydrolipoamide dehy 90.0 0.31 6.6E-06 52.6 4.1 34 45-79 176-209 (466)
352 TIGR03385 CoA_CoA_reduc CoA-di 89.8 0.33 7.2E-06 51.7 4.1 34 45-79 139-172 (427)
353 PRK14989 nitrite reductase sub 89.7 0.39 8.4E-06 55.5 4.8 36 45-80 5-43 (847)
354 PRK13512 coenzyme A disulfide 89.7 0.33 7.1E-06 51.9 3.9 34 45-79 150-183 (438)
355 PRK06129 3-hydroxyacyl-CoA deh 89.4 0.32 6.9E-06 49.3 3.4 32 45-77 4-35 (308)
356 PRK01438 murD UDP-N-acetylmura 89.4 0.34 7.4E-06 52.5 3.9 32 45-77 18-49 (480)
357 TIGR02374 nitri_red_nirB nitri 89.3 0.32 6.9E-06 56.0 3.6 35 46-80 1-37 (785)
358 PRK02705 murD UDP-N-acetylmura 89.2 0.36 7.8E-06 52.0 3.9 32 46-78 3-34 (459)
359 PRK05249 soluble pyridine nucl 89.1 0.38 8.3E-06 51.8 4.0 34 45-79 177-210 (461)
360 PRK12921 2-dehydropantoate 2-r 88.9 0.38 8.3E-06 48.6 3.6 30 46-76 3-32 (305)
361 TIGR02732 zeta_caro_desat caro 88.9 0.66 1.4E-05 50.1 5.6 36 45-81 1-36 (474)
362 TIGR03452 mycothione_red mycot 88.8 0.43 9.2E-06 51.3 4.0 34 45-79 171-204 (452)
363 PRK06292 dihydrolipoamide dehy 88.8 0.43 9.3E-06 51.4 4.1 34 45-79 171-204 (460)
364 PRK06522 2-dehydropantoate 2-r 88.5 0.43 9.3E-06 48.2 3.7 30 46-76 3-32 (304)
365 PF13241 NAD_binding_7: Putati 88.3 0.42 9.2E-06 39.5 2.8 33 43-76 7-39 (103)
366 TIGR01424 gluta_reduc_2 glutat 88.0 0.49 1.1E-05 50.7 3.9 34 45-79 168-201 (446)
367 PTZ00153 lipoamide dehydrogena 87.8 0.53 1.1E-05 52.7 4.0 34 45-79 314-347 (659)
368 TIGR02354 thiF_fam2 thiamine b 87.4 0.62 1.3E-05 43.8 3.7 34 43-77 21-55 (200)
369 PRK06718 precorrin-2 dehydroge 87.2 0.67 1.5E-05 43.6 3.8 31 44-75 11-41 (202)
370 PRK06719 precorrin-2 dehydroge 87.1 0.68 1.5E-05 41.6 3.7 30 44-74 14-43 (157)
371 PTZ00058 glutathione reductase 87.1 0.58 1.3E-05 51.5 3.8 34 45-79 239-272 (561)
372 PRK09260 3-hydroxybutyryl-CoA 87.0 0.54 1.2E-05 47.1 3.3 32 46-78 4-35 (288)
373 PRK15116 sulfur acceptor prote 87.0 0.65 1.4E-05 45.6 3.7 35 43-78 30-65 (268)
374 PRK14106 murD UDP-N-acetylmura 86.9 0.61 1.3E-05 50.1 3.9 33 44-77 6-38 (450)
375 PRK08293 3-hydroxybutyryl-CoA 86.9 0.6 1.3E-05 46.8 3.5 32 45-77 5-36 (287)
376 PF02254 TrkA_N: TrkA-N domain 86.8 0.71 1.5E-05 38.9 3.5 32 46-78 1-32 (116)
377 PRK07066 3-hydroxybutyryl-CoA 86.8 0.62 1.4E-05 47.2 3.6 32 45-77 9-40 (321)
378 PLN02507 glutathione reductase 86.8 0.63 1.4E-05 50.6 3.9 33 45-78 205-237 (499)
379 TIGR03143 AhpF_homolog putativ 86.6 0.64 1.4E-05 51.3 3.9 34 44-78 144-177 (555)
380 COG3486 IucD Lysine/ornithine 86.5 0.99 2.1E-05 46.2 4.7 40 40-79 2-41 (436)
381 PRK08010 pyridine nucleotide-d 86.4 0.74 1.6E-05 49.3 4.1 34 45-79 160-193 (441)
382 PF01488 Shikimate_DH: Shikima 86.3 0.8 1.7E-05 40.0 3.6 33 43-76 12-45 (135)
383 TIGR01470 cysG_Nterm siroheme 86.3 0.79 1.7E-05 43.3 3.8 31 45-76 11-41 (205)
384 PRK08229 2-dehydropantoate 2-r 86.1 0.7 1.5E-05 47.5 3.7 32 45-77 4-35 (341)
385 PRK07819 3-hydroxybutyryl-CoA 86.1 0.66 1.4E-05 46.4 3.3 33 45-78 7-39 (286)
386 PRK12475 thiamine/molybdopteri 86.0 0.75 1.6E-05 47.1 3.7 35 43-78 24-59 (338)
387 TIGR02731 phytoene_desat phyto 85.9 1.1 2.3E-05 48.3 5.1 51 249-301 222-274 (453)
388 PLN02546 glutathione reductase 85.9 0.74 1.6E-05 50.6 3.9 34 45-79 254-287 (558)
389 PLN02487 zeta-carotene desatur 85.9 1.1 2.3E-05 49.4 5.1 37 43-80 75-111 (569)
390 PRK07688 thiamine/molybdopteri 85.7 0.84 1.8E-05 46.7 3.9 35 43-78 24-59 (339)
391 cd01483 E1_enzyme_family Super 85.6 0.9 2E-05 40.1 3.6 32 46-78 2-34 (143)
392 COG1748 LYS9 Saccharopine dehy 85.5 0.84 1.8E-05 47.1 3.7 32 45-77 3-35 (389)
393 PF00899 ThiF: ThiF family; I 85.3 0.77 1.7E-05 40.1 3.0 34 44-78 3-37 (135)
394 PRK08223 hypothetical protein; 85.2 0.83 1.8E-05 45.2 3.4 35 43-78 27-62 (287)
395 PRK14694 putative mercuric red 84.7 1 2.2E-05 48.7 4.2 32 45-77 180-211 (468)
396 PRK12770 putative glutamate sy 84.6 0.89 1.9E-05 47.0 3.6 32 45-77 174-206 (352)
397 PRK14618 NAD(P)H-dependent gly 84.5 1.1 2.3E-05 45.9 4.1 33 44-77 5-37 (328)
398 PRK13748 putative mercuric red 84.4 0.92 2E-05 50.3 3.8 32 45-77 272-303 (561)
399 cd01487 E1_ThiF_like E1_ThiF_l 84.4 1.1 2.4E-05 41.0 3.7 31 46-77 2-33 (174)
400 cd01080 NAD_bind_m-THF_DH_Cycl 84.4 1.2 2.7E-05 40.4 4.0 33 43-76 44-77 (168)
401 KOG3923|consensus 84.2 0.91 2E-05 44.4 3.1 34 43-76 3-42 (342)
402 PRK07530 3-hydroxybutyryl-CoA 84.2 0.99 2.2E-05 45.3 3.6 32 45-77 6-37 (292)
403 PRK07411 hypothetical protein; 84.0 0.82 1.8E-05 47.9 3.0 35 43-78 38-73 (390)
404 PRK06035 3-hydroxyacyl-CoA deh 84.0 1 2.2E-05 45.1 3.6 31 46-77 6-36 (291)
405 PRK05808 3-hydroxybutyryl-CoA 83.8 1 2.3E-05 44.9 3.6 32 45-77 5-36 (282)
406 PRK14727 putative mercuric red 83.7 1 2.2E-05 48.8 3.7 31 45-76 190-220 (479)
407 COG1893 ApbA Ketopantoate redu 83.5 0.99 2.2E-05 45.5 3.3 32 46-78 3-34 (307)
408 PTZ00052 thioredoxin reductase 83.3 1.1 2.3E-05 48.9 3.7 31 45-76 184-214 (499)
409 PRK14620 NAD(P)H-dependent gly 83.3 1.1 2.4E-05 45.8 3.6 31 46-77 3-33 (326)
410 cd05292 LDH_2 A subgroup of L- 83.1 1.2 2.7E-05 45.0 3.8 33 45-78 2-36 (308)
411 cd01075 NAD_bind_Leu_Phe_Val_D 82.9 1.4 2.9E-05 41.5 3.7 31 45-76 30-60 (200)
412 COG1004 Ugd Predicted UDP-gluc 82.8 1.2 2.6E-05 45.6 3.4 32 45-77 2-33 (414)
413 TIGR01763 MalateDH_bact malate 82.7 1.3 2.7E-05 44.8 3.7 31 45-76 3-34 (305)
414 TIGR02355 moeB molybdopterin s 82.5 1.5 3.1E-05 42.6 3.8 35 43-78 24-59 (240)
415 PRK05690 molybdopterin biosynt 82.2 1.4 3.1E-05 42.9 3.7 34 43-77 32-66 (245)
416 PF01262 AlaDh_PNT_C: Alanine 82.1 1.4 3.1E-05 40.1 3.5 33 44-77 21-53 (168)
417 TIGR00518 alaDH alanine dehydr 82.0 1.3 2.9E-05 46.0 3.6 33 43-76 167-199 (370)
418 PRK11730 fadB multifunctional 81.9 2.2 4.7E-05 48.6 5.6 33 45-78 315-347 (715)
419 TIGR02356 adenyl_thiF thiazole 81.8 1.7 3.7E-05 40.9 4.0 35 43-78 21-56 (202)
420 PF13478 XdhC_C: XdhC Rossmann 81.7 1.4 3E-05 38.5 3.1 32 46-78 1-32 (136)
421 TIGR03736 PRTRC_ThiF PRTRC sys 81.6 1.5 3.4E-05 42.3 3.6 35 42-77 10-55 (244)
422 PRK06130 3-hydroxybutyryl-CoA 81.3 1.7 3.7E-05 44.1 4.1 32 45-77 6-37 (311)
423 PRK08328 hypothetical protein; 81.0 1.7 3.6E-05 42.0 3.7 34 43-77 27-61 (231)
424 PRK12549 shikimate 5-dehydroge 80.9 1.7 3.6E-05 43.4 3.7 33 44-77 128-161 (284)
425 PTZ00318 NADH dehydrogenase-li 80.9 1.4 3.1E-05 46.8 3.5 35 45-79 175-222 (424)
426 cd00401 AdoHcyase S-adenosyl-L 80.8 1.6 3.5E-05 45.8 3.7 33 44-77 203-235 (413)
427 TIGR03026 NDP-sugDHase nucleot 80.7 1.5 3.3E-05 46.4 3.6 33 45-78 2-34 (411)
428 PRK11064 wecC UDP-N-acetyl-D-m 80.6 1.5 3.2E-05 46.4 3.5 33 45-78 5-37 (415)
429 KOG2018|consensus 80.3 1.7 3.7E-05 42.6 3.3 32 43-76 75-107 (430)
430 cd00757 ThiF_MoeB_HesA_family 79.8 1.9 4.1E-05 41.5 3.6 34 43-77 21-55 (228)
431 cd05311 NAD_bind_2_malic_enz N 79.6 1.8 3.9E-05 41.5 3.4 34 44-78 26-62 (226)
432 PRK00094 gpsA NAD(P)H-dependen 79.6 1.7 3.6E-05 44.4 3.4 32 45-77 3-34 (325)
433 cd01486 Apg7 Apg7 is an E1-lik 79.5 2.1 4.5E-05 42.6 3.8 32 46-78 2-34 (307)
434 PRK02472 murD UDP-N-acetylmura 79.4 1.8 3.9E-05 46.4 3.7 31 46-77 8-38 (447)
435 cd05291 HicDH_like L-2-hydroxy 79.1 2.1 4.6E-05 43.2 3.9 32 46-78 3-36 (306)
436 PRK12548 shikimate 5-dehydroge 78.9 2 4.4E-05 43.0 3.6 32 45-77 128-160 (289)
437 PLN02353 probable UDP-glucose 78.8 1.9 4.2E-05 46.2 3.6 32 45-77 3-36 (473)
438 cd01485 E1-1_like Ubiquitin ac 78.8 2.1 4.6E-05 40.2 3.5 34 43-77 19-53 (198)
439 cd01484 E1-2_like Ubiquitin ac 78.8 2 4.4E-05 41.3 3.4 31 46-77 2-33 (234)
440 cd05191 NAD_bind_amino_acid_DH 78.8 2.7 5.9E-05 33.3 3.7 31 44-75 24-55 (86)
441 TIGR01915 npdG NADPH-dependent 78.5 2.2 4.7E-05 40.8 3.6 31 46-77 3-34 (219)
442 KOG2495|consensus 78.5 1.4 3.1E-05 45.3 2.3 43 37-79 212-267 (491)
443 PRK14619 NAD(P)H-dependent gly 78.1 2.5 5.4E-05 42.8 4.1 32 45-77 6-37 (308)
444 PLN02545 3-hydroxybutyryl-CoA 78.0 2.6 5.7E-05 42.3 4.2 31 46-77 7-37 (295)
445 cd01492 Aos1_SUMO Ubiquitin ac 77.9 2.3 5E-05 39.8 3.5 34 43-77 21-55 (197)
446 cd01488 Uba3_RUB Ubiquitin act 77.8 2.4 5.1E-05 42.3 3.6 31 46-77 2-33 (291)
447 COG1179 Dinucleotide-utilizing 77.4 2.4 5.2E-05 40.3 3.3 35 43-78 30-65 (263)
448 TIGR01381 E1_like_apg7 E1-like 77.4 2.4 5.1E-05 46.6 3.8 35 43-78 338-373 (664)
449 COG2072 TrkA Predicted flavopr 77.2 2.5 5.5E-05 45.1 3.9 35 44-79 176-210 (443)
450 PRK11749 dihydropyrimidine deh 77.1 2.3 5.1E-05 45.7 3.7 33 44-77 274-307 (457)
451 cd00755 YgdL_like Family of ac 76.9 2.7 5.9E-05 40.4 3.7 34 43-77 11-45 (231)
452 PLN02612 phytoene desaturase 76.9 3.1 6.7E-05 46.1 4.7 46 251-301 319-364 (567)
453 COG3075 GlpB Anaerobic glycero 76.8 2.1 4.5E-05 42.6 2.8 56 249-308 267-322 (421)
454 cd01490 Ube1_repeat2 Ubiquitin 76.7 2.5 5.3E-05 44.6 3.6 32 46-78 2-39 (435)
455 cd01339 LDH-like_MDH L-lactate 76.4 2.4 5.3E-05 42.7 3.4 32 46-78 1-33 (300)
456 PLN02172 flavin-containing mon 76.4 2.3 5E-05 45.6 3.4 32 45-77 206-237 (461)
457 PRK07417 arogenate dehydrogena 76.1 2.4 5.2E-05 42.2 3.2 31 46-77 3-33 (279)
458 COG1250 FadB 3-hydroxyacyl-CoA 76.0 2.8 6.1E-05 41.9 3.6 32 46-78 6-37 (307)
459 TIGR00936 ahcY adenosylhomocys 75.8 2.9 6.3E-05 43.7 3.8 34 43-77 195-228 (406)
460 PF00670 AdoHcyase_NAD: S-aden 75.7 2.6 5.6E-05 37.8 2.9 34 44-78 24-57 (162)
461 cd01489 Uba2_SUMO Ubiquitin ac 75.6 2.6 5.7E-05 42.4 3.3 31 46-77 2-33 (312)
462 PRK06153 hypothetical protein; 75.5 3 6.6E-05 42.9 3.8 35 43-78 176-211 (393)
463 COG0686 Ald Alanine dehydrogen 75.4 2.9 6.2E-05 41.3 3.3 34 43-77 168-201 (371)
464 PRK07233 hypothetical protein; 75.4 3.7 8.1E-05 43.6 4.7 53 248-307 206-258 (434)
465 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.3 2.8 6E-05 45.5 3.7 33 45-78 7-39 (503)
466 PRK05562 precorrin-2 dehydroge 75.3 3.2 7E-05 39.5 3.7 30 44-74 26-55 (223)
467 TIGR02437 FadB fatty oxidation 75.2 2.8 6E-05 47.7 3.8 33 45-78 315-347 (714)
468 COG4716 Myosin-crossreactive a 74.8 2.4 5.2E-05 42.8 2.7 53 250-302 237-291 (587)
469 PF10727 Rossmann-like: Rossma 74.7 2.8 6.2E-05 36.0 2.9 33 42-75 9-41 (127)
470 COG3634 AhpF Alkyl hydroperoxi 74.6 2.4 5.2E-05 42.4 2.6 40 39-79 350-389 (520)
471 PF00056 Ldh_1_N: lactate/mala 74.6 3.6 7.8E-05 36.2 3.6 32 45-77 2-36 (141)
472 PLN02520 bifunctional 3-dehydr 74.6 3 6.5E-05 45.6 3.7 31 45-76 381-411 (529)
473 KOG2304|consensus 74.5 3.4 7.5E-05 38.7 3.5 37 41-78 9-45 (298)
474 TIGR02853 spore_dpaA dipicolin 74.3 3.1 6.7E-05 41.6 3.5 33 44-77 152-184 (287)
475 PRK06223 malate dehydrogenase; 74.1 3.3 7.1E-05 41.9 3.7 32 45-77 4-36 (307)
476 PRK07878 molybdopterin biosynt 74.1 3.2 7E-05 43.5 3.7 35 43-78 42-77 (392)
477 PTZ00082 L-lactate dehydrogena 73.9 4.4 9.5E-05 41.2 4.5 34 44-78 7-41 (321)
478 TIGR00507 aroE shikimate 5-deh 73.8 3.4 7.4E-05 40.9 3.7 32 45-77 119-150 (270)
479 PRK08268 3-hydroxy-acyl-CoA de 73.7 3.3 7.1E-05 45.1 3.7 32 46-78 10-41 (507)
480 PRK00066 ldh L-lactate dehydro 73.6 3.6 7.7E-05 41.8 3.8 34 44-78 7-42 (315)
481 cd01078 NAD_bind_H4MPT_DH NADP 73.6 4 8.6E-05 38.1 3.9 32 44-76 29-61 (194)
482 PRK07531 bifunctional 3-hydrox 73.6 3.1 6.8E-05 45.2 3.6 32 45-77 6-37 (495)
483 PRK05597 molybdopterin biosynt 73.3 3.3 7.2E-05 42.8 3.5 35 43-78 28-63 (355)
484 PRK08017 oxidoreductase; Provi 73.2 3.7 8E-05 39.9 3.7 31 46-77 5-36 (256)
485 PTZ00245 ubiquitin activating 73.1 4.1 8.9E-05 39.3 3.7 34 43-77 26-60 (287)
486 PRK12810 gltD glutamate syntha 73.0 7 0.00015 42.2 6.1 60 250-312 339-410 (471)
487 PRK09496 trkA potassium transp 73.0 3.5 7.5E-05 44.3 3.8 33 45-78 2-34 (453)
488 PRK05476 S-adenosyl-L-homocyst 72.9 3.9 8.4E-05 43.1 3.9 34 44-78 213-246 (425)
489 COG2085 Predicted dinucleotide 72.8 3.8 8.2E-05 38.3 3.4 30 46-76 4-33 (211)
490 PRK08762 molybdopterin biosynt 72.7 3.7 8E-05 42.9 3.7 34 43-77 135-169 (376)
491 PRK01710 murD UDP-N-acetylmura 72.6 3.8 8.1E-05 44.1 3.9 33 45-78 16-48 (458)
492 TIGR02441 fa_ox_alpha_mit fatt 72.3 3.6 7.9E-05 46.9 3.8 33 45-78 337-369 (737)
493 PRK05600 thiamine biosynthesis 72.2 3.6 7.8E-05 42.7 3.5 35 43-78 41-76 (370)
494 PRK12778 putative bifunctional 72.2 3.5 7.5E-05 47.5 3.7 32 45-77 572-604 (752)
495 PRK14027 quinate/shikimate deh 72.1 4.1 8.9E-05 40.6 3.7 32 45-77 129-161 (283)
496 PRK09424 pntA NAD(P) transhydr 71.7 3.8 8.2E-05 44.3 3.6 34 43-77 165-198 (509)
497 PRK04308 murD UDP-N-acetylmura 71.4 4.3 9.4E-05 43.4 4.0 33 45-78 7-39 (445)
498 PRK12550 shikimate 5-dehydroge 71.3 4.3 9.4E-05 40.1 3.7 32 45-77 124-156 (272)
499 PRK08306 dipicolinate synthase 71.3 4.1 9E-05 40.9 3.6 34 43-77 152-185 (296)
500 PRK10669 putative cation:proto 71.2 3.6 7.8E-05 45.5 3.4 35 43-78 417-451 (558)
No 1
>KOG1238|consensus
Probab=100.00 E-value=3.5e-95 Score=750.96 Aligned_cols=568 Identities=47% Similarity=0.807 Sum_probs=511.3
Q ss_pred CCcccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCCCcccCcccccccCCCCcccccccccccccccCCC
Q psy754 36 KDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLK 115 (610)
Q Consensus 36 ~~~~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (610)
...+...+||+||||||.+||++|.+|++++.++|||||+|+......+.|.....++.+.++|.|.++|+. ..+....
T Consensus 50 ~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~-~ac~~m~ 128 (623)
T KOG1238|consen 50 TGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQ-HACLAMS 128 (623)
T ss_pred cccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccCh-hhhhhhc
Confidence 344577789999999999999999999998889999999999887677888777788899999999999998 7777788
Q ss_pred CCeeeecCcccccchhhhccceeecCCccchHHHHhcCCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEEeeCC
Q psy754 116 GQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTE 195 (610)
Q Consensus 116 ~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~~ 195 (610)
+..+.|+||+++||+|.+|+|.|.|....||+.|.+.+.++|+|+++.+||+++|+.........++|+..|++.+....
T Consensus 129 ~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~ 208 (623)
T KOG1238|consen 129 EDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGV 208 (623)
T ss_pred CCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceecccc
Confidence 99999999999999999999999999999999999999999999999999999999977755566789999999999988
Q ss_pred CCChhHHHHHHHHHHcCCCccCCCCCCcceeeeecccccCCeecchhHhhhhcccC-CCCcEEecCceEEEEEEcCCCCe
Q psy754 196 YNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK-RCNLTVKDSSFVKKILIDPVTKK 274 (610)
Q Consensus 196 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~-~~gv~i~~~~~V~~i~~~~~~~r 274 (610)
+..+....+.++..+.|.+..|+++....|+...+.+.+++.|++...+|+.+... ++|+.+..++.|++|.+|+.+.+
T Consensus 209 ~~~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~ 288 (623)
T KOG1238|consen 209 YPNNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKR 288 (623)
T ss_pred ccCchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCce
Confidence 99999999999999999888899999999999989999999999999999988766 88999999999999999988889
Q ss_pred EEEEEEEEc-CeEEEEEecceEEeccCCcCchhHHHHhCCCChhhhhhCCCCceeecc-cchhhhhccccceeEEEEcCC
Q psy754 275 ACGVLATIK-GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQP 352 (610)
Q Consensus 275 v~GV~~~~~-g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dH~~~~~~~~~~~~~ 352 (610)
+.||++... ++.+++.|+|+|||+||+++||+|||+|||||.++|++.||+++.++| ||+||+||+......+ ...+
T Consensus 289 a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~-~~~~ 367 (623)
T KOG1238|consen 289 AKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVF-STNP 367 (623)
T ss_pred EEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeee-cCCC
Confidence 999999987 799999999999999999999999999999999999999999999999 9999999999844443 4334
Q ss_pred cccchhhhhhcccchhhhHhhcCCCcccccccceEEEEecCCCCCCCCCCCeEEEEecccccCCCCccchhccccchhhh
Q psy754 353 IGLLQDRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLY 432 (610)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (610)
.......+. ....+.+|+..+.|+++..+.+..+|+++..+..+..+||+++++....+..+.+..+....+ +++
T Consensus 368 ~~~~~~~~~--~~~~~~~yl~~~~G~~~~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~---~~y 442 (623)
T KOG1238|consen 368 VELSLIRLV--GITTVGQYLEGGSGPLASPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALG---EIY 442 (623)
T ss_pred ccccccccc--cchHHHHHHHcCCCCcccCcceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcc---hHH
Confidence 333223332 456678888888899886668889999999888888999999988877776665444444333 677
Q ss_pred hhhcccCCCCCeeEEEeeeccccceeEEEeeCCCCCCCCeeccCCCCChhhHHHHHHHHHHHHHHHcCcchhhhcccccc
Q psy754 433 NSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHK 512 (610)
Q Consensus 433 ~~~~~~~~~~~~~~i~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 512 (610)
+.++.+......+.|+..+.+|.|+|+|.|+++||...|.|++||+.+|+|++.+.++++.+.++.++++|+++++.++.
T Consensus 443 ~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~ 522 (623)
T KOG1238|consen 443 QALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWK 522 (623)
T ss_pred HHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhcc
Confidence 77776665555688888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCccCCCCcEeccCCceEeeccCCCCCCCcccHHHHH
Q psy754 513 APIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVY 592 (610)
Q Consensus 513 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~nL~V~D~Sv~P~~~~~NPtlTi~ 592 (610)
.+.|+|+...+.++++|++++|....|.+|++|||+||+..||++|||+++||||++||||+|+|+||.++++||.+|+|
T Consensus 523 ~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~ 602 (623)
T KOG1238|consen 523 KPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVM 602 (623)
T ss_pred ccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q psy754 593 MIAEKASDMIKKTWLPNQ 610 (610)
Q Consensus 593 Ala~r~a~~i~~~~~~~~ 610 (610)
|+|+|+|+.|+++|..++
T Consensus 603 MIgek~ad~Ik~~~~~~~ 620 (623)
T KOG1238|consen 603 MIGEKAADMIKEEWLANK 620 (623)
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 999999999999998763
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=6e-79 Score=666.04 Aligned_cols=525 Identities=40% Similarity=0.641 Sum_probs=409.7
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC---CCCcccCccccc-ccCCCCcccccccccccccccCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF---NYLVDIPVLNTN-LILSPLNWGYKTEKEDCRACLGLK 115 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~---~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 115 (610)
+.++|||||||||++|+++|.+||+++|++|||||+|+.. ......|..... .....++|.|...++. ...
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~-----~~~ 76 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP-----HMN 76 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC-----CCC
Confidence 3567999999999999999999998779999999999753 222333432211 2234567888777665 556
Q ss_pred CCeeeecCcccccchhhhccceeecCCccchHHHHhc-CCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEEeeC
Q psy754 116 GQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYT 194 (610)
Q Consensus 116 ~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~-g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~ 194 (610)
++.+.|.+|++|||+|.+|++.+.|+.+.||+.|+.. |..+|+|++++|||+++|.++.. ...+|+..|++.+...
T Consensus 77 ~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~---~~~~~g~~gp~~~~~~ 153 (560)
T PRK02106 77 NRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTRG 153 (560)
T ss_pred CCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC---CccccCCCCCEEEeCC
Confidence 7788999999999999999999999999999999987 77899999999999999998632 3346788899988754
Q ss_pred -CCCChhHHHHHHHHHHcCCCc-cCCCCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCC
Q psy754 195 -EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT 272 (610)
Q Consensus 195 -~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~ 272 (610)
....+..+.+.++++++|++. .+.++....|++.|...|..|.|.++..+|+.+..++.|++|++++.|++|+++ +
T Consensus 154 ~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~ 231 (560)
T PRK02106 154 KPGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--G 231 (560)
T ss_pred CCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--C
Confidence 445677888899999999987 466666677888887788899999999999977777889999999999999998 6
Q ss_pred CeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCCCChhhhhhCCCCceeecc-cchhhhhccccceeEEEEcC
Q psy754 273 KKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQ 351 (610)
Q Consensus 273 ~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dH~~~~~~~~~~~~ 351 (610)
++++||++.+.+...++.+.|+||||||+++||+||++|||||.++|+..||+++.++| ||+||+||+.. .+.+.+++
T Consensus 232 ~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~ 310 (560)
T PRK02106 232 KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQ 310 (560)
T ss_pred CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCC
Confidence 89999999865444444344799999999999999999999999999999999999999 99999999997 67787766
Q ss_pred Ccccch--hhhhhcccchhhhHhhcCCCcccccccceEEEEecCCCCCCCCCCCeEEEEecccccCCCCccchhccccch
Q psy754 352 PIGLLQ--DRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITD 429 (610)
Q Consensus 352 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (610)
+..... ..+. ......+|...+.|++.........|.+.... ...|++++.+.+...... + .
T Consensus 311 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~-~----------~ 374 (560)
T PRK02106 311 PVSLYPALKWWN--KPKIGAEWLFTGTGLGASNHFEAGGFIRSRAG---VDWPNIQYHFLPVAIRYD-G----------S 374 (560)
T ss_pred Ccccccccchhh--hhHHHHHHHhcCCCCccccccceeeEEecCCC---CCCCCeEEEEeecccccc-C----------C
Confidence 533211 0111 11122355555566655434444455543211 123555544332111000 0 0
Q ss_pred hhhhhhcccCCCCCeeEEEeeeccccceeEEEeeCCCCCCCCeeccCCCCChhhHHHHHHHHHHHHHHHcCcchhhhccc
Q psy754 430 HLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGST 509 (610)
Q Consensus 430 ~~~~~~~~~~~~~~~~~i~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~ 509 (610)
... ....+++...+.+|.|+|+|+|+++||++.|.|+++|+.+++|+++++++++.+++++++.+++.+...
T Consensus 375 -------~~~-~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~ 446 (560)
T PRK02106 375 -------NAV-KGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGR 446 (560)
T ss_pred -------CCC-CCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccc
Confidence 000 112355555667899999999999999999999999999999999999999999999988777665433
Q ss_pred cccCCCCCCCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCccCCCCcEeccCCceEeeccCCCCCCCcccHH
Q psy754 510 LHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVA 589 (610)
Q Consensus 510 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~nL~V~D~Sv~P~~~~~NPtl 589 (610)
. ..|+. ...+++++++|++....+++|++||||||+++ +||||++|||||++||||+|+||||+.+++||++
T Consensus 447 ~---~~p~~---~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~--~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ 518 (560)
T PRK02106 447 E---ISPGA---DVQTDEEIDAFVREHAETAYHPSCTCKMGTDP--MAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNA 518 (560)
T ss_pred c---cCCCc---ccCCHHHHHHHHHhccCcCcccCCCeecCCCC--CeeECCCCEEeccCCeEEeeccccCCCCCcchHH
Confidence 2 23443 24578889999999888999999999999744 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy754 590 VVYMIAEKASDMIKKTWL 607 (610)
Q Consensus 590 Ti~Ala~r~a~~i~~~~~ 607 (610)
|+||+|+|+||+|+++++
T Consensus 519 ti~aiaeraAd~I~~~~~ 536 (560)
T PRK02106 519 PTIMIAEKAADLIRGRTP 536 (560)
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999999999873
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=6.5e-78 Score=654.56 Aligned_cols=520 Identities=38% Similarity=0.598 Sum_probs=407.8
Q ss_pred cEEEECCCchHHHHHHHHhcCCC-CcEEEEcCCCCCC---CCcccCccccc-ccCCCCcccccccccccccccCCCCCee
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHYFN---YLVDIPVLNTN-LILSPLNWGYKTEKEDCRACLGLKGQRC 119 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G-~~VlvLE~G~~~~---~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (610)
||||||||.+|+++|.+||+ .| .+|||||+|+... .....|..... +....+.|.|.+.++. ...++.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~-~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~ 74 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE-DVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP-----HMNNRRV 74 (532)
T ss_pred CEEEECCCchHHHHHHHhcc-CCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC-----CCCCceE
Confidence 89999999999999999999 66 7999999998542 22333332211 2234467888777766 5667889
Q ss_pred eecCcccccchhhhccceeecCCccchHHHHh-cCCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEEeeCCCCC
Q psy754 120 PWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK-LGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNT 198 (610)
Q Consensus 120 ~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~-~g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~~~~~ 198 (610)
.|.+|++|||+|.+|++.+.|+.+.||+.|+. .|..+|+|+++.|||+++|..+.. ..++|+..|++.+...+...
T Consensus 75 ~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~ 151 (532)
T TIGR01810 75 GHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADN 151 (532)
T ss_pred eeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCC
Confidence 99999999999999999999999999999988 577899999999999999998753 23578889999988776667
Q ss_pred hhHHHHHHHHHHcCCCc-cCCCCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEE
Q psy754 199 PMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACG 277 (610)
Q Consensus 199 ~~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~G 277 (610)
+..+.+.++++++|++. .+.++....+++.+...|..|.|.++..+|+.++.++.|++|++++.|++|+++ ++|++|
T Consensus 152 ~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~G 229 (532)
T TIGR01810 152 PLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATG 229 (532)
T ss_pred HHHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEE
Confidence 78889999999999987 456665666777777778889999999999977666889999999999999998 789999
Q ss_pred EEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCCCChhhhhhCCCCceeecc-cchhhhhccccceeEEEEcCCcccc
Q psy754 278 VLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGLL 356 (610)
Q Consensus 278 V~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dH~~~~~~~~~~~~~~~~~ 356 (610)
|++...+...++.+.|+||||||+++||+||++|||||.++|++.||+++.++| ||+||+||+.. .+.+.++.+....
T Consensus 230 V~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~ 308 (532)
T TIGR01810 230 VEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLY 308 (532)
T ss_pred EEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCcccc
Confidence 999865544444444799999999999999999999999999999999999999 99999999997 7777776543211
Q ss_pred hh--hhhhcccchhhhHhhcCCCcccccccceEEEEecCCCCCCCCCCCeEEEEecccccCCCCccchhccccchhhhhh
Q psy754 357 QD--RLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNS 434 (610)
Q Consensus 357 ~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (610)
.. .+. ......+|...+.|+..........|..... ....|++++.+.+...... +.
T Consensus 309 ~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~-~~--------------- 367 (532)
T TIGR01810 309 PSLNWLK--QPFIGAQWLFGRKGAGASNHFEGGGFVRSND---DVDYPNIQYHFLPVAIRYD-GT--------------- 367 (532)
T ss_pred cccchhh--hhHHHHHHHhcCCCCccccccceeEEEecCC---CCCCCCeEEEEEeeeeccC-CC---------------
Confidence 00 000 1112234554455655544444455655331 1134566554432111000 00
Q ss_pred hcccCCCCCeeEEEeeeccccceeEEEeeCCCCCCCCeeccCCCCChhhHHHHHHHHHHHHHHHcCcchhhhccccccCC
Q psy754 435 VYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAP 514 (610)
Q Consensus 435 ~~~~~~~~~~~~i~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 514 (610)
.......+++.....+|.|+|+|+|+++||++.|.|+++|+.+|+|++.+.++++.+++++++..++.+.... .
T Consensus 368 ---~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---~ 441 (532)
T TIGR01810 368 ---KAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE---I 441 (532)
T ss_pred ---CCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc---c
Confidence 0001123455555678999999999999999999999999999999999999999999999887777654322 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCccCCCCcEeccCCceEeeccCCCCCCCcccHHHHHHH
Q psy754 515 IPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMI 594 (610)
Q Consensus 515 ~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~nL~V~D~Sv~P~~~~~NPtlTi~Al 594 (610)
.|+. ...++++|++|++....+.+|++||||||++++++||||+++||||++||||||+||||+.+++||++|+||+
T Consensus 442 ~p~~---~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~ai 518 (532)
T TIGR01810 442 SPGP---EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMM 518 (532)
T ss_pred CCCC---CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHH
Confidence 3332 3467899999999999999999999999974444699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy754 595 AEKASDMIKKTW 606 (610)
Q Consensus 595 a~r~a~~i~~~~ 606 (610)
|+|+||+|+++.
T Consensus 519 aeraAd~I~~~~ 530 (532)
T TIGR01810 519 GEKAADIIRGKK 530 (532)
T ss_pred HHHHHHHHhccC
Confidence 999999999764
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-70 Score=591.50 Aligned_cols=525 Identities=34% Similarity=0.593 Sum_probs=416.2
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC-CcccCcccccccCC-CCcccccccccccccccCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY-LVDIPVLNTNLILS-PLNWGYKTEKEDCRACLGLKG 116 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~-~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 116 (610)
.+..+||+||||||.+|+++|.+|++ +|++|+|||+|+.... ...+|..+...... ...|.|..+++. ...+
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-----~~~~ 76 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP-----HLRG 76 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc-----CCCC
Confidence 45668999999999999999999996 9999999999986543 33445444433333 778999888876 7788
Q ss_pred CeeeecCcccccchhhhccceeecCCccchHHHHhc-CCCCCCcCchHHHHHHHhhhccccccC-CCCCCCcceEEEeeC
Q psy754 117 QRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQN-SSYHGTQGFIGVDYT 194 (610)
Q Consensus 117 ~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~-g~~~w~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~G~l~~~~~ 194 (610)
+.+.|+++++|||+|.+|++.+.|..+.||+.|... |..+|.|++++|||+++|.+.+.+..+ ...|+..||+.+...
T Consensus 77 r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~ 156 (542)
T COG2303 77 RELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP 156 (542)
T ss_pred ccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC
Confidence 999999999999999999999999999999999876 679999999999999999987764433 457888999988777
Q ss_pred CCCChhHHHHHHHHHHcCCCc-cCCCCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCC
Q psy754 195 EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 273 (610)
Q Consensus 195 ~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~ 273 (610)
....+....+.++..++|++. .++++....|++.+...+..|.+++...++|.++.+++|++|++++.|++|+++ ++
T Consensus 157 ~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~ 234 (542)
T COG2303 157 RSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GD 234 (542)
T ss_pred CCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CC
Confidence 666788889999999999988 668887778888777776699999999999988889999999999999999999 88
Q ss_pred eEEEEEEEEcCe--EEEEEecceEEeccCCcCchhHHHHhCCCChhhhhhCCCCceeecc-cchhhhhccccceeEEEEc
Q psy754 274 KACGVLATIKGI--DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVN 350 (610)
Q Consensus 274 rv~GV~~~~~g~--~~~i~a~~~VVlAaG~~~sp~LL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dH~~~~~~~~~~~ 350 (610)
|++||++...+. .....+.++||||||+++||+||++||||+...+...|+.++.++| ||+||+||+.+ .+.+...
T Consensus 235 r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~ 313 (542)
T COG2303 235 RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEAT 313 (542)
T ss_pred eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheecc
Confidence 999999985332 2333344799999999999999999999999999999999999999 99999999997 6666665
Q ss_pred CCcc-cchhhhhhcccchhhhHhhcCCCcccccccceEEEEecCCCCCCCCCCCeEEEEecccccCCCCccchhccccch
Q psy754 351 QPIG-LLQDRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITD 429 (610)
Q Consensus 351 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (610)
.... .....+. ........|...+.|+...+..+.. |..+. +....|+.++++.+..... .
T Consensus 314 ~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~g-f~~~~---~~~~~p~~~~~~~~~~~~~-------~------ 375 (542)
T COG2303 314 EPTNDSVLSLFS-KLGIGADRYLLTRDGPGATNHFEGG-FVRSG---PAGEYPDGQYHFAPLPLAI-------R------ 375 (542)
T ss_pred Cccccccccccc-cccccceeEEeecCCCccccccccc-ccccC---ccccCCCcccccccccccc-------c------
Confidence 5431 1100110 0111113344445666554444433 44433 2234566655553221100 0
Q ss_pred hhhhhhcccCCCCCeeEEEeeeccccceeEEEeeCCCCCCCCeeccCCCCChhhHHHHHHHHHHHHHHHcCcchhhhccc
Q psy754 430 HLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGST 509 (610)
Q Consensus 430 ~~~~~~~~~~~~~~~~~i~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~ 509 (610)
.......+++.....+|.++|.|.+++.||...|.|+.+|..++.|++.+.++++..++++.+..+..+...
T Consensus 376 --------~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~ 447 (542)
T COG2303 376 --------AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKA 447 (542)
T ss_pred --------ccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHH
Confidence 001234567777778999999999999999999999999999999999999999999999875555544332
Q ss_pred cccCCCCCCCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCccCCCCcEeccCCceEeeccCCCCCCCcccHH
Q psy754 510 LHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVA 589 (610)
Q Consensus 510 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~nL~V~D~Sv~P~~~~~NPtl 589 (610)
+..|+. ...+++++..|++....+.+|++||||||.|+. ++|+|+++||||++||||+|+|+||+++++||++
T Consensus 448 ---e~~~~~---~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~-~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ 520 (542)
T COG2303 448 ---ELAPGP---RVTTDEDISAAIRFLARTAYHPMGTCRMGSDPA-AVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNL 520 (542)
T ss_pred ---hhcCCC---ccccHHHHHHHHHhccCccccccccccCCCCch-hhccccccccccCCCeEEeCcccCcCccCCCccH
Confidence 223443 345677899999999999999999999996555 4666799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy754 590 VVYMIAEKASDMIKKT 605 (610)
Q Consensus 590 Ti~Ala~r~a~~i~~~ 605 (610)
||+|||+|+||+|+++
T Consensus 521 ti~ala~raA~~I~~~ 536 (542)
T COG2303 521 TIIALAERAADHILGD 536 (542)
T ss_pred hHHHHHHHHHHHHhhc
Confidence 9999999999999983
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.1e-66 Score=563.24 Aligned_cols=504 Identities=23% Similarity=0.312 Sum_probs=346.6
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCCCcccCcccccccCCCCcccccccccccccccCCCCCee
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRC 119 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (610)
...+|||||||+|.+||++|.+|++ +.+|||||+|+.......... ...+.....+|.|...++. ...++.+
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~-----~~~~~~~ 123 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQA-----FISTDGV 123 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCcccccc-----ccCCCce
Confidence 3457999999999999999999998 489999999985321111111 0111223456877766654 5567788
Q ss_pred eecCcccccchhhhccceeecCCccchHHHHhcCCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEEeeCCCCCh
Q psy754 120 PWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTP 199 (610)
Q Consensus 120 ~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~~~~~~ 199 (610)
.|.+|++|||+|.+|++.|.|..+.+|+. .+|+|+++.++|++.|+.... .+...+
T Consensus 124 ~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~------------------~~~~~~ 179 (587)
T PLN02785 124 INARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH------------------WPKVAP 179 (587)
T ss_pred eccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc------------------CCCcCh
Confidence 99999999999999999999999999963 579999999999999875311 112345
Q ss_pred hHHHHHHHHHHcCCCccC-CCCCCcceeeeecccc--cCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCC--Ce
Q psy754 200 MLDAFLQAGMEAGYPLVD-YNGKTQTGFARAQATL--HKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT--KK 274 (610)
Q Consensus 200 ~~~~~~~~~~~~G~~~~~-~~~~~~~g~~~~~~~~--~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~--~r 274 (610)
....+.+++.+.|++... .......|... ..+. ..|.|.++.. ++ +.+.+.|++|++++.|++|++++++ ++
T Consensus 180 ~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~-g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~r 256 (587)
T PLN02785 180 WQAALRDSLLEVGVSPFNGFTYDHVYGTKV-GGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPR 256 (587)
T ss_pred HHHHHHHHHHHcCCCccCCCCCCCccceee-eEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCce
Confidence 678899999999997511 11111111111 1112 3577777665 45 5677889999999999999998532 48
Q ss_pred EEEEEEEE-cCeEEEE----EecceEEeccCCcCchhHHHHhCCCChhhhhhCCCCceeecc-cchhhhhccccceeEEE
Q psy754 275 ACGVLATI-KGIDHKI----LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFL 348 (610)
Q Consensus 275 v~GV~~~~-~g~~~~i----~a~~~VVlAaG~~~sp~LL~~Sgig~~~~l~~~gi~~~~~~~-vG~~l~dH~~~~~~~~~ 348 (610)
++||++.+ +|..+++ .++++||||||+++||+||++|||||..+|+++||+++.++| ||+||+|||.. .+.+.
T Consensus 257 a~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~ 335 (587)
T PLN02785 257 ATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVP 335 (587)
T ss_pred EEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc-ceEEE
Confidence 99999975 4544433 245799999999999999999999999999999999999999 99999999987 66666
Q ss_pred EcCCcccchhhhhhcccchhhhHhhcCCCcccccccceEEEEecCCCCCCCCCCCeEEEEecc-cccCC--CCccchhcc
Q psy754 349 VNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLTMLGCEGLAYVNTKYNVFPDDLPDIEFIFTAV-SLASD--GGVSLRQEM 425 (610)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~--~~~~~~~~~ 425 (610)
.+.+... ... ..+.....|.+..... .|...... ............... ..... ....+..++
T Consensus 336 ~~~~~~~---~~~-------~~~~~~~~g~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (587)
T PLN02785 336 SKAPVEQ---SLI-------QTVGITKMGVYIEASS---GFGQSPDS-IHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYI 401 (587)
T ss_pred eCCCchh---hhH-------hhhhhhccccceeccc---ccccCchh-hhhhccccccccccccccCcccccchhhhhhc
Confidence 5543210 000 0011111122110000 00000000 000000000000000 00000 000000000
Q ss_pred ccchhhhhhhcccCCCCCeeEEEeeeccccceeEEEeeCCCCCCCCeeccCCCCChhhHHHHHHHHHHHHHHHcCcchhh
Q psy754 426 GITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQS 505 (610)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 505 (610)
. .. ..+ +........+...+..|.|+|+|+|.++||.+.|.|+++|+.+|.|++.+.++++.+++++++..++.
T Consensus 402 ~---~~--~~~-~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~ 475 (587)
T PLN02785 402 H---RK--KNL-PHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTN 475 (587)
T ss_pred c---Cc--ccc-cccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhh
Confidence 0 00 000 00000111344556789999999999999999999999999999999999999999999999988887
Q ss_pred hcccccc--C------------CCCCCCCCCCCCHHHHHHHHHhhcCCCccccccccccCCCCCCCccCCCCcEeccCCc
Q psy754 506 IGSTLHK--A------------PIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNL 571 (610)
Q Consensus 506 ~~~~~~~--~------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~nL 571 (610)
+...... . ..|+ ...++++|++|++....+.+|++|||+|| +|||+++||||++||
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~L 545 (587)
T PLN02785 476 FTQCDKQTMEKVLNMSVKANINLIPK----HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRL 545 (587)
T ss_pred hccccccccccccccccccccccCCC----CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCe
Confidence 6532110 0 0121 13467889999999999999999999999 799999999999999
Q ss_pred eEeeccCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCC
Q psy754 572 RVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPN 609 (610)
Q Consensus 572 ~V~D~Sv~P~~~~~NPtlTi~Ala~r~a~~i~~~~~~~ 609 (610)
||||+|+||.+|++||++|+||+|+|+|++|++++..+
T Consensus 546 RVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~ 583 (587)
T PLN02785 546 RVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGR 583 (587)
T ss_pred EEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999987543
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=2.3e-53 Score=449.71 Aligned_cols=487 Identities=18% Similarity=0.169 Sum_probs=292.6
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCCCc----ccC---------cccccccC----------------
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLV----DIP---------VLNTNLIL---------------- 94 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~~~----~~p---------~~~~~~~~---------------- 94 (610)
|||||||+|++|+++|+.|++ +|++|+|||++....... -.+ .+...+++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 799999999999999999999 999999999998764210 000 00000000
Q ss_pred -CCCccccc---------ccccccccccCCCCCeeeecCcccccchhhhccceeecCCccchHHHHhcCCCCC--CcCch
Q psy754 95 -SPLNWGYK---------TEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW--SYNEV 162 (610)
Q Consensus 95 -~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w--~~~~~ 162 (610)
..-.|.-. .+|.. .-......-.+.+.+||+|.+|++.++|+.+.+. .| . ..+| +|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~-~~dWPI~y~eL 150 (544)
T TIGR02462 80 LDPTAWSASIESFFVSNGKNPEQ-----DPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--L-SDDAAEDDAEW 150 (544)
T ss_pred CCccccccCCCcceecCCCCccc-----CchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--C-CCCCCCCHHHH
Confidence 00111100 00000 0000011123568899999999999999998542 11 1 3688 89999
Q ss_pred HHHHHHHhhhccccccCCCCCCCcceEEEeeCCCCChhHHHHHHHHHHcCCCccCCCCCCcceeeeecccccCCeecchh
Q psy754 163 LPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSA 242 (610)
Q Consensus 163 ~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~ 242 (610)
+|||+++|++++++.. ............+.+.+.++ |... ....+. .+.. ..|..+.+++..
T Consensus 151 ~PyY~~Ae~~~gv~g~-----------~~~~~~~~~~~~~~~~~~~~--g~~~-~~~~Pl--A~~~--~~c~~~ak~s~~ 212 (544)
T TIGR02462 151 DRLYTKAESLIGTSTD-----------QFDESIRHNLVLRKLQDEYK--GQRD-FQPLPL--ACHR--RTDPTYVEWHSA 212 (544)
T ss_pred HHHHHHHHHHhCCCCC-----------cCCCcccchhHHHHHHHHhc--cccc-cccCch--hhhc--cCCCccceecCC
Confidence 9999999999987321 00011111222333333332 2200 001111 1111 135556777654
Q ss_pred Hhhhhccc----CCCCcEEecCceEEEEEEcCCC-CeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHHhCCCC
Q psy754 243 KDYIDPIK----KRCNLTVKDSSFVKKILIDPVT-KKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 315 (610)
Q Consensus 243 ~~~l~~~~----~~~gv~i~~~~~V~~i~~~~~~-~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig~ 315 (610)
.+.+..+. ...+++|++++.|++|+.++++ ++|++|++.+ +++.++++| +.||||||+++||+||++|+++.
T Consensus 213 ~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A-~~vVLAagaIetpRLLL~S~~~~ 291 (544)
T TIGR02462 213 DTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKA-DVYVLACGAVHNPQILVNSGFGQ 291 (544)
T ss_pred ccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEEC-CEEEEccCchhhHHHHHhCCCCC
Confidence 44453332 4678999999999999998654 6899999986 577888999 58999999999999999999874
Q ss_pred hhhhhhCCCCceeec-ccchhhhhccccceeEEEEcCCcccchhhhhhcccchhhhHhhcCCCccccc---ccceEEEEe
Q psy754 316 QEHLNDLNIPVIKNL-RVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPKLFPQWYFEGKGKLTML---GCEGLAYVN 391 (610)
Q Consensus 316 ~~~l~~~gi~~~~~~-~vG~~l~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~ 391 (610)
.. .+.|+.+.... .||||||||+.. .+.+.++++... .+. ......+|........... +.....|..
T Consensus 292 ~~--~p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 363 (544)
T TIGR02462 292 LG--RPDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTELVD---SVR--SDPRGLDWWKEKVANHMMKHPEDPLPIPFRD 363 (544)
T ss_pred Cc--CCCCcCCCCCCCCCCcchhcCCCc-cEEEEecchhhh---hcc--CCccccccccccchhhhccccCCcccccccc
Confidence 32 34455554312 499999999987 666666654210 000 0000111110000000000 000000000
Q ss_pred cCCCCCCCCCCCeEEEEecccccCCCCccc-hhccccchhhhhhhcccCCCCCeeEE-EeeeccccceeEEEeeC--CCC
Q psy754 392 TKYNVFPDDLPDIEFIFTAVSLASDGGVSL-RQEMGITDHLYNSVYSSVDRKDSWSI-WPMILYPRSRGKVLLKD--SHP 467 (610)
Q Consensus 392 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~s~g~v~l~~--~d~ 467 (610)
..|... .++.....|+..+ +..+.+. ...+.........+ +.....|..+|+|+|++ +|.
T Consensus 364 --------~~~~~~---~~~~~~~~w~~~~~~~~~~~g-----~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~ 427 (544)
T TIGR02462 364 --------PEPQVT---TPFTEEHPWHTQIHRDAFSYG-----AVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDT 427 (544)
T ss_pred --------cCcccc---cccccccccchhhhhhhhhcc-----cccccccccceeeEEEEeccCCCCCCeEEcCCCCcCC
Confidence 000000 0000000011111 0000000 00000001111111 12234588899999975 699
Q ss_pred CCCCeeccCCCCChhhHHHHHHHHHHHHHHHcCcchhhhccccccCCCCCCCCCCCCCHHHHHHHHHhhcCCCccccccc
Q psy754 468 LTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTC 547 (610)
Q Consensus 468 ~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~ 547 (610)
+|+|+++++|..+++|++.+.++.+.+.+++ ..+|+..... .+. + .....+.|++|||
T Consensus 428 ~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~-----~~~G~~~~~~-~~~--------------~--~~~~~~~H~~Gt~ 485 (544)
T TIGR02462 428 YNMPQPTFDFRFSAADSKRARRMMTDMCNVA-----AKIGGYLPGS-LPQ--------------F--MEPGLALHLAGTT 485 (544)
T ss_pred CCCeeEEEEEeCCHHHHHHHHHHHHHHHHHH-----HHcCCCcccc-ccc--------------c--cCCCccccCCCCe
Confidence 9999999999999999999999999999984 4555431110 000 0 0123578999999
Q ss_pred cccCCCCCCCccCCCCcEeccCCceEeeccCCCCCCCcccHHHHHHHHHHHHHHHHhhc
Q psy754 548 KMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 606 (610)
Q Consensus 548 rMG~~~~~~~VVD~~~rv~g~~nL~V~D~Sv~P~~~~~NPtlTi~Ala~r~a~~i~~~~ 606 (610)
|||.++. +||||+++||||++||||+|+|+||+++++|||+|+||||+|+|++|++++
T Consensus 486 rMG~dp~-~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 486 RIGFDEQ-TTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred ecCCCCC-CceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9998766 699999999999999999999999999999999999999999999999875
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.1e-45 Score=374.09 Aligned_cols=288 Identities=40% Similarity=0.671 Sum_probs=226.3
Q ss_pred ccEEEECCCchHHHHHHHHhcCCC-CcEEEEcCCCCCCCCcccCc-ccccccCCCCcccccccccccccccCCCCCeeee
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHYFNYLVDIPV-LNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPW 121 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G-~~VlvLE~G~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (610)
|||||||||++|+++|.+||+ .| ++|||||+|+........+. .........+.|.+...++. ..+++.+.|
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~-~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 74 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSE-AGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP-----FLNGRTINW 74 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTT-STTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE-----CTTTTSEEE
T ss_pred CCEEEECcCHHHHHHHHHHhh-CCCCcEEEEEccccCccccchhhhccccccCccccccccccccc-----ccccceeee
Confidence 899999999999999999999 65 79999999998764332111 11222334566777666655 677888889
Q ss_pred cCcccccchhhhccceeecCCccchHHHHhc-CCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEE-eeCCCCCh
Q psy754 122 PSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGV-DYTEYNTP 199 (610)
Q Consensus 122 ~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~-g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~-~~~~~~~~ 199 (610)
+++++|||+|.+|++.+.|+.+.+|+.|... +...|+|+++.+||+++|.+..+ ....|+..+++.+ .......+
T Consensus 75 ~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~---~~~~~g~~~~~~v~~~~~~~~~ 151 (296)
T PF00732_consen 75 PRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGP---SSDLHGVDGPLPVSSSPPYPSP 151 (296)
T ss_dssp EEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTT---BGGGSCBSSSEEEHHHCSCHCT
T ss_pred ecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccc---cccccccccccccccccCCCCH
Confidence 9999999999999999999999999999987 67789999999999999988776 3566777788887 44445567
Q ss_pred hHHHHHHHHHHcCCCc-cCCCCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEE
Q psy754 200 MLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGV 278 (610)
Q Consensus 200 ~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV 278 (610)
....+.++++++|++. .+.+....+|++.....|+.+.|.++..+||.++.++.|++|+++|+|++|+++.++++++||
T Consensus 152 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV 231 (296)
T PF00732_consen 152 MNQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGV 231 (296)
T ss_dssp HHHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEE
T ss_pred HHHHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeee
Confidence 7788999999999984 556666666665554458999999999999988777789999999999999997667899999
Q ss_pred EEEEcCe---EEEEEecceEEeccCCcCchhHHHHhCCCChhhhhhCCCCceeecccchhhhhccc
Q psy754 279 LATIKGI---DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLA 341 (610)
Q Consensus 279 ~~~~~g~---~~~i~a~~~VVlAaG~~~sp~LL~~Sgig~~~~l~~~gi~~~~~~~vG~~l~dH~~ 341 (610)
++.+.+. ...+.+ |+||||||+++||+||++||||+..+|++.||+++.++|||+||+|||.
T Consensus 232 ~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~~ 296 (296)
T PF00732_consen 232 EYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHPV 296 (296)
T ss_dssp EEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--EE
T ss_pred eeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhcccC
Confidence 9996333 345556 7999999999999999999999999999999999999999999999983
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=3.5e-33 Score=250.77 Aligned_cols=143 Identities=42% Similarity=0.740 Sum_probs=117.1
Q ss_pred ccceeEEEeeCCCCCCCCeeccCCCCChhhHHHHHHHHHHHHHHHcCcchhhhcccccc-CCCCCCCCCCCCCHHHHHHH
Q psy754 454 PRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHK-APIPGCSQYTFGSDAYWGCS 532 (610)
Q Consensus 454 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~ 532 (610)
|.|+|+|+|+++||++.|.|+++|+.+++|++.+.++++.+++++++. +++++..... ...+.+......++++|+++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 789999999999999999999999999999999999999999999887 6666543221 12222223345678899999
Q ss_pred HHhhcCCCccccccccccCCCCCCCccCCCCcEeccCCceEeeccCCCCCCCcccHHHHHHHHHHH
Q psy754 533 VRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKA 598 (610)
Q Consensus 533 ~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~nL~V~D~Sv~P~~~~~NPtlTi~Ala~r~ 598 (610)
++....+++|++||||||.++++ +|||++|||||++||||+|+|+||+++++||++|+||||+|+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999999986 999999999999999999999999999999999999999996
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.50 E-value=2.1e-13 Score=149.43 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=51.7
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
+...+++.|++|++++.|++|+.++ +++|+||.+..+++.++|.|++.||||+|+|+...-|+
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHH
Confidence 3345678899999999999999975 37999999987777788999657999999998755444
No 10
>PRK07121 hypothetical protein; Validated
Probab=99.49 E-value=3.3e-13 Score=146.10 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=51.0
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHH
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML 310 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~ 310 (610)
|...+++.|++|++++.|++|+.++ +++|+||++..+++...+.|++.||||+|++...+-|++
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 3345677899999999999999874 379999999876666788895589999999986555543
No 11
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.47 E-value=3.9e-13 Score=145.75 Aligned_cols=63 Identities=16% Similarity=0.366 Sum_probs=50.6
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
++....++.|++|+++++|++|+.+ +++|+||++..++...+|.|+|.||||||+++..+-|+
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 3433345569999999999999987 68999999877777788999668999999997654444
No 12
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.47 E-value=4.6e-13 Score=145.84 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=49.8
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|+++++|++|+.+ +++|+||.+..++....|.|+|.||||+|+++...-|+
T Consensus 225 ~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 225 AGVLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence 4456789999999999999976 68999998877676777888778999999998765443
No 13
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.46 E-value=8e-13 Score=140.54 Aligned_cols=58 Identities=24% Similarity=0.417 Sum_probs=46.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE--EcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~--~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|++++.|++|+.+ +++|+||.+. .+++.++|+|+ .||||+|++.. .++.
T Consensus 149 ~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 149 KAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 4567788999999999999998 7899999999 57888899995 99999999988 4443
No 14
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.45 E-value=1.2e-12 Score=141.55 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=47.0
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|++++.|++|+.+ +++|+||.+.. +++..++.+ +.||+|+|++..+.-++
T Consensus 198 ~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 198 KNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCHHHH
Confidence 4456789999999999999876 68999999874 335567999 58999999987654433
No 15
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.45 E-value=4.3e-13 Score=144.45 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=52.1
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE-EcCeEEEEEecceEEeccCCcCchhHHHHhCCC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT-IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 314 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~-~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig 314 (610)
..+++.|++|+++++|++|+.+ +++|+||.+. .++....+++ +.||||+|++.+++.++..-.+
T Consensus 139 ~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 139 RSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcC
Confidence 4567789999999999999987 6899999985 4555667899 6899999999988877765443
No 16
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.44 E-value=5.1e-13 Score=145.86 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=51.1
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|++++.|++|+.+ +++|+||++..+++.++|.|++.||||+|++....-|+
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 4567789999999999999988 68999999987777788999668999999998765544
No 17
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.40 E-value=5.3e-12 Score=133.84 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=43.1
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCc
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~s 304 (610)
.++.|++|++++.|++|+.+ +++|.||.+..++..+.+.| +.||||+|+++.
T Consensus 139 ~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 139 KKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 34569999999999999887 68999988766565567899 689999999764
No 18
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.39 E-value=7.3e-12 Score=136.65 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=49.2
Q ss_pred ccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
.+.+.|++|+++++|++|..+ +++++||++.+ +++...|+| +.||+|||++ +.+|+...|+
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A-~~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHA-PVVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEEC-CEEEECCChh-HHHHHHhcCC
Confidence 456789999999999999887 78999999864 344568999 5799999975 7888766553
No 19
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.39 E-value=4.1e-12 Score=134.62 Aligned_cols=64 Identities=27% Similarity=0.411 Sum_probs=55.6
Q ss_pred HHHHHHhhccccccccccccCCCcccCCcccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 15 YAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
|.++++....+..+.-+++.+.......+|||||||+|+.|+++|++|++..|. +|+|||++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 2 YSAFSLLKEGLRGHRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred ccHHHHHHHHhccCCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 566777888889999999999887777899999999999999999999982384 9999999853
No 20
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.38 E-value=5.7e-12 Score=138.96 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=45.3
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|+.++.|++|+.++ +++|.||.+.+ +|+...|.| |.||||+|+++.
T Consensus 174 ~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 174 GQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 44567899999999999999842 58999998753 676778899 689999999864
No 21
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.37 E-value=7.9e-12 Score=136.82 Aligned_cols=37 Identities=32% Similarity=0.592 Sum_probs=34.5
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|..++||||||+|.+|+++|..+++ .|.+|+||||++
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3467999999999999999999999 999999999997
No 22
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.36 E-value=5.6e-12 Score=131.03 Aligned_cols=58 Identities=34% Similarity=0.506 Sum_probs=44.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
..+++.|++|+++++|++|..+ +++++||.+.+ | .++| +.||+|+|+ ++++|+...++
T Consensus 155 ~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~-g---~i~a-d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 155 AEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSD-G---EIRA-DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETT-E---EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred HHHHHhhhhccccccccchhhc--ccccccccccc-c---cccc-ceeEecccc-cceeeeecccc
Confidence 4456779999999999999999 78999998752 2 4899 579999996 68888877664
No 23
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=1.2e-11 Score=135.42 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=44.7
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN 303 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~ 303 (610)
..+.+.|+++++++.|++|+.+ +++|+||.+.+ ++....+.| |.||||+|+++
T Consensus 144 ~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 144 ERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 3345579999999999999997 68999999874 455678899 68999999986
No 24
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.35 E-value=9.9e-12 Score=135.94 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=51.9
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHh
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS 311 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~S 311 (610)
..+++.|++|+++++|++|+.+ +++|+||++..+++..+|.|++.||||+|++.+.+-|+..
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 4456789999999999999987 6899999987667777899965799999999987766543
No 25
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=1.8e-11 Score=134.41 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=45.5
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|++++.|++|+.++ +++|.||.+.+ ++....|.| |.||||+|+++.
T Consensus 151 ~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 151 QQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred HHhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 44567899999999999999853 48999999853 676778999 689999999864
No 26
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.34 E-value=6.2e-12 Score=136.84 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=44.1
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCc
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~s 304 (610)
++.|++|++++.|++|+.++++++|+||.+..++....+.| |.||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence 45699999999999999874347999998877776667889 689999999753
No 27
>PLN02815 L-aspartate oxidase
Probab=99.32 E-value=1.1e-11 Score=135.29 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=42.8
Q ss_pred CCCCcEEecCceEEEEEEcCCCC--eEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTK--KACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~--rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
+..|++|++++.|++|+.+++++ +|+||.+.+ ++....|.| |.||||+|+++.
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 45699999999999999864333 499999863 566678899 699999999863
No 28
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.32 E-value=3.4e-11 Score=132.79 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=45.2
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|+.++.|++|+.++ +++|.||.+.+ +|+...|.| |.||||+|+++.
T Consensus 195 ~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 251 (635)
T PLN00128 195 GQAMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRA-HSTILATGGYGR 251 (635)
T ss_pred HHHHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCcc
Confidence 33456799999999999998863 47999998864 577778899 689999999875
No 29
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=3.4e-11 Score=132.58 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=45.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|++++.|++|+.++ +++|+||.+.+ +|..+.|.| +.||||+|+++.
T Consensus 157 ~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 157 QQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred HHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 34566899999999999999873 37999999853 666778999 689999999875
No 30
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=3.7e-11 Score=132.92 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=45.2
Q ss_pred ccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
.+++.|++|++++.|++|+.+ +++|+||.+.+ ++....|.| +.||||+|+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 456789999999999999987 68999999874 566667899 589999999875
No 31
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.30 E-value=1.9e-11 Score=133.23 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=43.1
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE-----EcCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT-----IKGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~-----~~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+++.|++|++++.|++|+.++ +++|.||.+. ..+....+.| +.||+|+|++..
T Consensus 152 ~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 152 AAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 44567789999999999999873 3699999886 2233457889 689999999763
No 32
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.29 E-value=3.3e-11 Score=128.90 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=47.4
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcCchhHHH
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
|...+++.|++|++++.|++|+.++ +++++||++.. +++...+.+ +.||+|+|++....-++
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHHHH
Confidence 3345677899999999999999864 47899999875 444455777 68999999987644443
No 33
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=4.2e-11 Score=131.64 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=44.3
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|++++.|++|+.+ +++|.||.+.. ++....+.| +.||||+|++..
T Consensus 143 ~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 143 NNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 4456789999999999999987 68999998643 565567899 689999999864
No 34
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.28 E-value=3.9e-11 Score=132.00 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=49.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|++++.|++|+.+ +++|+||.+..++...+|+|++.||||+|++....-++
T Consensus 225 ~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 225 KSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 4567889999999999999987 68999999876566667888558999999997655543
No 35
>PRK12839 hypothetical protein; Provisional
Probab=99.28 E-value=3.5e-11 Score=131.50 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=47.1
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|++++.|++|+.++ +++|+||.+...+...++.+.|.||||+|++....-++
T Consensus 222 ~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 222 RSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence 44677899999999999998764 47999999875444455666578999999998754443
No 36
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.28 E-value=3.5e-11 Score=132.24 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=50.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML 310 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~ 310 (610)
..+++.|++|++++.|++|+.+ +++|+||.+..+++.+++.|++.||||+|++...+-|++
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 4567789999999999999987 689999998876767788876689999999988654443
No 37
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.27 E-value=3.3e-11 Score=132.54 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=48.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|++++.|++|+.+ +++|+||.+...+....+.+++.||||+|++....-++
T Consensus 222 ~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 222 KSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 3456789999999999999988 68999999886444556888668999999987555544
No 38
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.27 E-value=3.1e-11 Score=130.28 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=43.9
Q ss_pred cccCC-CCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKR-CNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~-~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+++ .|++|++++.|++|+.+ +++++||.+...+....+.| +.||+|+|++..
T Consensus 136 ~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 136 KKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred HHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 33444 79999999999999887 68999998876555567889 589999999864
No 39
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.26 E-value=4e-11 Score=127.17 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=32.9
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
+||||||||++|+++|++|++ .|++|+||||++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence 699999999999999999999 89999999999753
No 40
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=1.1e-10 Score=128.51 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=40.8
Q ss_pred CcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 254 NLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 254 gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
+++++.++.|++|+.++ +++|+||.+.+ ++....+.| +.||||+|++..
T Consensus 151 ~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 48999999999999853 48999999875 455567888 689999999874
No 41
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=4.5e-11 Score=130.72 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=44.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|++++.|++|+.++ +++|+||.+.+ ++....|.| |.||||+|++..
T Consensus 142 ~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 142 EYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 44556899999999999999873 34699998764 566678999 689999999864
No 42
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.25 E-value=7.7e-11 Score=123.66 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=52.4
Q ss_pred ccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHHhCCC
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIG 314 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig 314 (610)
.+...|.++++.++|+.++.+ ++ ++||++.+ +|+++.|+| +.||.|||. ++.+++...+..
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGp-W~d~i~~~~~~~ 235 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRA-RAVVNAAGP-WVDEILEMAGLE 235 (532)
T ss_pred HHHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEc-CEEEECCCc-cHHHHHHhhccc
Confidence 467889999999999999999 66 99999985 678899999 589999997 588888877654
No 43
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.25 E-value=6.3e-11 Score=131.37 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=46.0
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|+.++.|++|+.+ +++|.||.+.+ +|....+.| |.||||+|+++.
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 4456789999999999999987 78999999874 676778889 689999999864
No 44
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.25 E-value=6.4e-11 Score=139.52 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=44.9
Q ss_pred CCCcEEecCceEEEEEEcCC----C---CeEEEEEEEE----cCeEEEEEecceEEeccCCcCchh
Q psy754 252 RCNLTVKDSSFVKKILIDPV----T---KKACGVLATI----KGIDHKILARKEVILSAGAFNSPK 306 (610)
Q Consensus 252 ~~gv~i~~~~~V~~i~~~~~----~---~rv~GV~~~~----~g~~~~i~a~~~VVlAaG~~~sp~ 306 (610)
+.|++|++++.|++|+.+++ + ++|+||++.. +|+.+.|.| |.||||+|+++...
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 36999999999999998742 2 3899999985 466778999 68999999998764
No 45
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.25 E-value=3.5e-11 Score=123.75 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=116.6
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCC--CcEEEEcCCCCCCCCcccCcccccccCCCCcccccccccccccccCCCCCee
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRC 119 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G--~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (610)
++|||||||||+.|+++|++|++ .+ ++|+||||-..+...++- ++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~-~~p~~~V~llEk~~~~a~~sS~-----------------------------~N--- 48 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSE-YEPDLSVALLEKEDGVAQESSS-----------------------------NN--- 48 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHH-hCCCceEEEEEccCcccccccc-----------------------------Cc---
Confidence 47999999999999999999998 55 999999998775411110 00
Q ss_pred eecCcccccchhhhccceeecCCccchHHH-HhcCCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEEeeCCCCC
Q psy754 120 PWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNT 198 (610)
Q Consensus 120 ~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~-~~~g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~~~~~ 198 (610)
+..+..+.+.. +.+++.- ...| -..+|+-..++ . .++... |.+.+...+.+.
T Consensus 49 ----------SgviHag~~y~--p~slka~l~~~g--------~~~~~~~~kq~-~-----~~f~~~-g~l~vA~~e~e~ 101 (429)
T COG0579 49 ----------SGVIHAGLYYT--PGSLKAKLCVAG--------NINEFAICKQL-G-----IPFINC-GKLSVATGEEEV 101 (429)
T ss_pred ----------ccceeccccCC--CcchhhHHHHHH--------HHHHHHHHHHh-C-----Cccccc-CeEEEEEChHHH
Confidence 00111111111 1122110 0000 01112222222 1 112222 667777777777
Q ss_pred hhHHHHHHHHHHcCCCc-cCCCC-----------CCcceeeeeccc-ccCCeecchhHhhhhcccCCCCcEEecCceEEE
Q psy754 199 PMLDAFLQAGMEAGYPL-VDYNG-----------KTQTGFARAQAT-LHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKK 265 (610)
Q Consensus 199 ~~~~~~~~~~~~~G~~~-~~~~~-----------~~~~g~~~~~~~-~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~ 265 (610)
+..+.+.+.+.+.|+.. ..++. ....+....+.+ +.+.. .....++ ..+.++|++|.++++|++
T Consensus 102 ~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~--~~t~~l~-e~a~~~g~~i~ln~eV~~ 178 (429)
T COG0579 102 ERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPG--ELTRALA-EEAQANGVELRLNTEVTG 178 (429)
T ss_pred HHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHH--HHHHHHH-HHHHHcCCEEEecCeeeE
Confidence 78888888999988872 11111 011222222211 11111 1222233 445677999999999999
Q ss_pred EEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCCCC
Q psy754 266 ILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 315 (610)
Q Consensus 266 i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig~ 315 (610)
|..+.+ .++-+.+. +|+.. ++| |.||.|||. .+.+|+.++|+.+
T Consensus 179 i~~~~d--g~~~~~~~-~g~~~-~~a-k~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 179 IEKQSD--GVFVLNTS-NGEET-LEA-KFVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred EEEeCC--ceEEEEec-CCcEE-EEe-eEEEECCch-hHHHHHHHhCCCc
Confidence 999843 34334333 44433 999 589999995 6899999999854
No 46
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=9.6e-11 Score=129.65 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=40.6
Q ss_pred cEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCch
Q psy754 255 LTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSP 305 (610)
Q Consensus 255 v~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp 305 (610)
++|+.++.|++|+.+ +++|.||.+.. ++....|.| +.||||+|+++..
T Consensus 166 v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~~ 215 (626)
T PRK07803 166 IKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGKS 215 (626)
T ss_pred eEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccCC
Confidence 999999999999987 68999998753 566678899 5899999997643
No 47
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.24 E-value=5.2e-11 Score=130.44 Aligned_cols=51 Identities=29% Similarity=0.467 Sum_probs=43.1
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
+..|++++.++.|++|+.+ +++|.||.+.+ ++....+.| +.||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 4468999999999999987 68999998763 566678999 699999999864
No 48
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.24 E-value=1.1e-10 Score=128.62 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=44.5
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|++++.|++|+.+ +++|+||.+.+ +++...+.| +.||||+|++..
T Consensus 137 ~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 137 EQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 4455669999999999999987 68999998863 565667899 689999999863
No 49
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.24 E-value=1.4e-10 Score=127.40 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=42.6
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
+..|+++++++.|++|+.+ +++|.||.+.+ ++....+.| +.||||+|++..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 4468999999999999987 68999998753 566678899 689999999763
No 50
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.24 E-value=7.9e-11 Score=117.23 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCccCCCCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE
Q psy754 202 DAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT 281 (610)
Q Consensus 202 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~ 281 (610)
+.+++.++.+|++...-.. |-.. |..........+++ ..+++.||+|++++.|.+|..+ + . +..+.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~----Gr~F----p~sdkA~~Iv~~ll-~~~~~~gV~i~~~~~v~~v~~~--~-~--~f~l~ 147 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDL----GRMF----PDSDKASPIVDALL-KELEALGVTIRTRSRVSSVEKD--D-S--GFRLD 147 (408)
T ss_pred HHHHHHHHhcCCeeEEccC----ceec----CCccchHHHHHHHH-HHHHHcCcEEEecceEEeEEec--C-c--eEEEE
Confidence 4566777888887733222 1111 11122223444444 5578899999999999999887 3 2 33333
Q ss_pred E-cCeEEEEEecceEEeccCCcCchhH
Q psy754 282 I-KGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 282 ~-~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
. +|. +|+|+ .+|||+|+..-|++
T Consensus 148 t~~g~--~i~~d-~lilAtGG~S~P~l 171 (408)
T COG2081 148 TSSGE--TVKCD-SLILATGGKSWPKL 171 (408)
T ss_pred cCCCC--EEEcc-EEEEecCCcCCCCC
Confidence 2 343 78995 79999999887865
No 51
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=5.1e-11 Score=131.18 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=42.4
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
+..|++++.++.|++|+.+ +++|+||.+.+ ++....+.| +.||||+|++..
T Consensus 149 ~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAGR 201 (577)
T ss_pred hcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhcc
Confidence 4479999999999999987 68999998763 565567899 689999999853
No 52
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.24 E-value=1.3e-10 Score=128.17 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=41.6
Q ss_pred ccCCC-CcEEecCceEEEEEEcCCCCeEEEEEEE--EcCeEEEEEecceEEeccCCcC
Q psy754 249 IKKRC-NLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFN 303 (610)
Q Consensus 249 ~~~~~-gv~i~~~~~V~~i~~~~~~~rv~GV~~~--~~g~~~~i~a~~~VVlAaG~~~ 303 (610)
.+++. |++|+.++.|++|+.+ +++|+||.+. .+++...+.| +.||||+|++.
T Consensus 141 ~a~~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 141 AAKKALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred HHHhcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 34444 5999999999999887 6799999764 2555567899 68999999975
No 53
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=1.8e-10 Score=126.72 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=45.6
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCC--CCeEEEEEEE--EcCeEEEEEecceEEeccCCcCc
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPV--TKKACGVLAT--IKGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~--~~rv~GV~~~--~~g~~~~i~a~~~VVlAaG~~~s 304 (610)
|...+.+.|++|++++.|++|+.+++ +++|+||.+. .+++...+.| +.||||+|++..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 33445678999999999999998731 1799999875 3566667899 689999999863
No 54
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.22 E-value=7.9e-11 Score=128.40 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=43.6
Q ss_pred cCCCCcEEecCceEEEEEEcC----CCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 250 KKRCNLTVKDSSFVKKILIDP----VTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~----~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
.+..|++|++++.|++|+.++ ++++|+||.+.+ +++...|.| +.||||+|++..
T Consensus 149 ~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 149 RNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 345699999999999998763 137999999864 566678899 689999999864
No 55
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.22 E-value=1.8e-10 Score=122.90 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=42.6
Q ss_pred CC--cEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCCC
Q psy754 253 CN--LTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 314 (610)
Q Consensus 253 ~g--v~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig 314 (610)
.| ++|+++++|++|..+ ++.+..|.+. +| +++|+ .||+|||++ +.+|+..+|++
T Consensus 228 ~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~-~G---~i~A~-~VVvaAG~~-S~~La~~~Gi~ 283 (497)
T PTZ00383 228 PGKKISINLNTEVLNIERS--NDSLYKIHTN-RG---EIRAR-FVVVSACGY-SLLFAQKMGYG 283 (497)
T ss_pred cCCCEEEEeCCEEEEEEec--CCCeEEEEEC-CC---EEEeC-EEEECcChh-HHHHHHHhCCC
Confidence 56 889999999999887 4556666543 34 68994 799999975 88999998874
No 56
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.22 E-value=3.8e-11 Score=128.88 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=32.8
Q ss_pred CcccEEEECCCchHHHHHHHHhcCC--CCcEEEEcCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHY 78 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~--G~~VlvLE~G~~ 78 (610)
.++||||||+|++|+++|++|++ . |.+|+|||++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~-~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQ-QRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHH-hCCCCeEEEEeCCcc
Confidence 35899999999999999999998 5 999999999854
No 57
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.21 E-value=2e-11 Score=126.98 Aligned_cols=91 Identities=22% Similarity=0.193 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCccCCCCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE
Q psy754 202 DAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT 281 (610)
Q Consensus 202 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~ 281 (610)
+.+++.+++.|++.....+ |..+ +.+ ....+....++ ..+++.|++|+++++|+.|..+ ++++..|++.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~----gr~f-P~s---~~a~~Vv~~L~-~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~ 148 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEED----GRVF-PKS---DKASSVVDALL-EELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTK 148 (409)
T ss_dssp HHHHHHHHHTT--EEE-ST----TEEE-ETT-----HHHHHHHHH-HHHHHHT-EEE-S--EEEEEEE--TTEEEEEEET
T ss_pred HHHHHHHHhcCCeEEEcCC----CEEC-CCC---CcHHHHHHHHH-HHHHHcCCEEEeCCEeeeeeec--CCceeEeecc
Confidence 3455666778877632111 1111 111 12233334333 5567889999999999999998 6788888873
Q ss_pred EcCeEEEEEecceEEeccCCcCchhH
Q psy754 282 IKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 282 ~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
++. .+.++ .||||+|+...|++
T Consensus 149 -~~~--~~~a~-~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 149 -NGG--EYEAD-AVILATGGKSYPKT 170 (409)
T ss_dssp -TTE--EEEES-EEEE----SSSGGG
T ss_pred -Ccc--cccCC-EEEEecCCCCcccc
Confidence 332 78994 79999999877764
No 58
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=3.1e-10 Score=124.85 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=44.6
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++++.++.|++|+.++ +++|.||.+.+ ++....+.| |.||||+|++..
T Consensus 156 ~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 156 QQNVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HHHHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 34566899999999999999863 47999999863 566667888 689999999864
No 59
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.20 E-value=2.6e-10 Score=119.74 Aligned_cols=34 Identities=44% Similarity=0.599 Sum_probs=32.2
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|||||||||++|+++|++|++ .|++|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 799999999999999999999 8999999999864
No 60
>PRK08275 putative oxidoreductase; Provisional
Probab=99.18 E-value=3.1e-10 Score=124.41 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=44.6
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcC
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN 303 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~ 303 (610)
|...+++.|++|++++.|++|+.++ +++|.||.+.+ ++....+.| |.||||+|+++
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 3344567899999999999998863 37899998753 565667889 68999999975
No 61
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.17 E-value=4.5e-10 Score=121.59 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=41.9
Q ss_pred CCcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcCc
Q psy754 253 CNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 253 ~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~s 304 (610)
.|++|++++.|++|+.+ +++|.||.+.+ +++...+.| +.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 69999999999999887 68999999875 455667889 589999999864
No 62
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.17 E-value=4.3e-10 Score=118.50 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=41.8
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
..+++.|++++++++|++|..+ ++++ .|... ++ ++.++ .||+|+|+ +++.++...|+
T Consensus 157 ~~~~~~Gv~i~~~~~V~~i~~~--~~~~-~V~~~-~g---~i~ad-~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEH--ANGV-VVRTT-QG---EYEAR-TLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HHHHhCCCEEEcCCEEEEEEec--CCeE-EEEEC-CC---EEEeC-EEEECCCc-chHHHHHHhCC
Confidence 4456789999999999999876 4443 34432 33 68894 79999997 57788777665
No 63
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.16 E-value=3.3e-10 Score=120.46 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=42.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG 312 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sg 312 (610)
..+++.|++|++++.|++|..+ ++++.+|... ++ ++.+ +.||+|+|++ +..|+...|
T Consensus 209 ~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~---~~~a-~~VV~a~G~~-~~~l~~~~g 265 (416)
T PRK00711 209 AMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GG---VITA-DAYVVALGSY-STALLKPLG 265 (416)
T ss_pred HHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-Cc---EEeC-CEEEECCCcc-hHHHHHHhC
Confidence 4456789999999999999887 6677777653 23 6889 5799999975 566655433
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.16 E-value=2.2e-10 Score=112.33 Aligned_cols=35 Identities=40% Similarity=0.533 Sum_probs=33.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++||||||+|++|+++|++|++ +|++|+|||+...
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 6999999999999999999999 9999999998754
No 65
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.15 E-value=5.6e-10 Score=121.00 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=42.2
Q ss_pred CCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCc
Q psy754 252 RCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 252 ~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..|++|+.++.|++|+.+ +++|+||.+...+....+.| +.||||+|+++.
T Consensus 149 ~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~A-k~VVLATGG~~~ 198 (513)
T PRK07512 149 TPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPA-RAVVLATGGIGG 198 (513)
T ss_pred CCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEEC-CEEEEcCCCCcC
Confidence 459999999999999877 68999999876555567889 589999999864
No 66
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.13 E-value=2.5e-10 Score=125.72 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
++.|++|++++.|++|+.++ +++|+||.+.+ ++....+.| |.||||+|+++.
T Consensus 144 ~~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 144 AAGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred ccCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 34589999999999999863 47999999875 465667899 689999999864
No 67
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.13 E-value=4.2e-10 Score=124.37 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=49.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHHhC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSG 312 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sg 312 (610)
..+.+.|++|+.++.|++|..+++++++++|.+.+ +++.++|.+ +.||+|||++ +.+|+...+
T Consensus 240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 240 CTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYA-KVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEe-CEEEECCCHh-HHHHHHhcc
Confidence 44677899999999999998863236899998864 455567899 5899999975 788887664
No 68
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.13 E-value=1e-09 Score=126.63 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 252 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 252 ~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
+.++++.+++.+++|+.+ +++|+||.+.+ +|+.+.|.| |.||||+|+++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 348999999999999987 68999999753 677778999 689999999863
No 69
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.12 E-value=4e-10 Score=110.05 Aligned_cols=35 Identities=46% Similarity=0.587 Sum_probs=33.3
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+|||||||+|++|+++|++|++ .|++|+||||+..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~~ 55 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSLA 55 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 6999999999999999999999 9999999999964
No 70
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.11 E-value=2.7e-10 Score=103.46 Aligned_cols=35 Identities=43% Similarity=0.581 Sum_probs=32.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+.||||||+|++|++|||+||+ +|+||+|+||.-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh-CCceEEEEEeecc
Confidence 6899999999999999999999 9999999998743
No 71
>PLN02661 Putative thiazole synthesis
Probab=99.10 E-value=4.8e-10 Score=112.33 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=42.1
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE------Ec-C----eEEEEEecceEEeccCCc
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT------IK-G----IDHKILARKEVILSAGAF 302 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~------~~-g----~~~~i~a~~~VVlAaG~~ 302 (610)
++....++.|++|+.++.|++|+.+ ++++.||.+. .. + ....|+| +.||+|+|.-
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~ 243 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHD 243 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCC
Confidence 4434456789999999999999998 7899999863 11 1 2347899 6899999953
No 72
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.09 E-value=1.9e-09 Score=118.04 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=42.5
Q ss_pred cCCCCcEEecCceEEEEEEcCC-CCeEEEEEEEE--cCeEEEEEecceEEeccCCcC
Q psy754 250 KKRCNLTVKDSSFVKKILIDPV-TKKACGVLATI--KGIDHKILARKEVILSAGAFN 303 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~-~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~ 303 (610)
+.+.+++|+.++.|++|+.+++ +++|+||.+.+ ++....|.| |.||||+|++.
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 3445689999999999998732 17999998853 566678899 68999999985
No 73
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.07 E-value=1.3e-09 Score=116.68 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=44.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE--EcCeEEEEEecceEEeccCCcCchhHHHHhCCC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 314 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~--~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig 314 (610)
..+++.|++|+++++|++|..++ ++.+. |.+. .++...+++| +.||+|||+ ++.+|+...|+.
T Consensus 186 ~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~-v~~~~~~~g~~~~i~A-~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 186 GYLVQNGTTIRFGHEVRNLKRQS-DGSWT-VTVKNTRTGGKRTLNT-RFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcC-CCeEE-EEEeeccCCceEEEEC-CEEEECCCc-chHHHHHHcCCC
Confidence 34566799999999999998763 23332 3332 2343446899 579999997 478888888863
No 74
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.07 E-value=1.7e-09 Score=112.91 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=32.1
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|||||||+|++|+++|++|++ .|++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 699999999999999999999 8999999999854
No 75
>KOG2820|consensus
Probab=99.07 E-value=7.4e-10 Score=106.92 Aligned_cols=61 Identities=26% Similarity=0.257 Sum_probs=45.7
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHh
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS 311 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~S 311 (610)
+...++..|+.++.+.+|+.+.+.+.++-.++|.+.+ |. .+.| |.+|+++|+| +.+||..+
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~-gs--~Y~a-kkiI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD-GS--IYHA-KKIIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc-CC--eeec-ceEEEEecHH-HHhhcCcc
Confidence 3345788999999999999998875456666666654 32 5788 5799999985 77777654
No 76
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.07 E-value=1e-09 Score=100.61 Aligned_cols=35 Identities=43% Similarity=0.626 Sum_probs=30.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++||+|||+|++|+++|++||+ .|+||+|+|+...
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCCC
Confidence 6999999999999999999999 8999999999854
No 77
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.06 E-value=1.2e-09 Score=114.68 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=33.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+|||||||+|++|+++|++|++ .|++|+|||++..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence 6999999999999999999999 8999999999864
No 78
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=1.2e-09 Score=118.52 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=43.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEc-CeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~-g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+.+.|++++.+++|++|..+ ++ ..+|.+.+. |++.++.| +.||.|+|++ +.+++.
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRA-RALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEe-cEEEECCCcc-HHHHHh
Confidence 3467889999999999999886 44 356766543 55678999 5899999975 677765
No 79
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=2.3e-09 Score=114.93 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcC-CCCcEEEEcCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF 79 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~-~G~~VlvLE~G~~~ 79 (610)
.++||||||||+.|+++|++|++. +|++|+||||....
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 469999999999999999999973 58999999998653
No 80
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.04 E-value=1.8e-09 Score=117.01 Aligned_cols=40 Identities=23% Similarity=0.480 Sum_probs=36.3
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
|.++|||||||+|+.|+++|++||+ .|++|+||||++...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~-rGl~V~LvEk~d~~~ 42 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAG-RGLSVLLCEQDDLAS 42 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCCC
Confidence 4567999999999999999999999 999999999986644
No 81
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.02 E-value=9.5e-09 Score=109.44 Aligned_cols=60 Identities=25% Similarity=0.128 Sum_probs=42.3
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEE--EcCeEEEEEecceEEeccCCcCchhHHHHhCCC
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 314 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~--~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig 314 (610)
+..|++|+++++|++|..+++ +.++ |.+. ..++..+++| +.||+|||+ ++.+|+..+|+.
T Consensus 196 ~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~A-d~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 196 SHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVA-DYVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred hCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEc-CEEEECCCc-chHHHHHHcCCC
Confidence 456999999999999987632 3332 3332 2332336889 489999997 578899888863
No 82
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.02 E-value=1.1e-09 Score=116.72 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=46.6
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML 310 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~ 310 (610)
..+++.|++|+++++|++|+.++++++++||....++ .++.+ |.||||+|++...+-++.
T Consensus 131 ~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 131 SSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHHH
Confidence 4567889999999999999886424789998874333 47888 689999999987665543
No 83
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.02 E-value=6.9e-10 Score=106.53 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=54.8
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE---E----cC--------eEEEEEecceEEeccCCcCchhHHHH
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT---I----KG--------IDHKILARKEVILSAGAFNSPKLLML 310 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~---~----~g--------~~~~i~a~~~VVlAaG~~~sp~LL~~ 310 (610)
+.....+.-+++.+.++|.+|... +++|+||.-. . .| ..++++| ..||++.|+|+...-|.+
T Consensus 159 ~re~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGnhelVR 235 (552)
T COG3573 159 LREAQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGNHELVR 235 (552)
T ss_pred HHHHHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCCHHHHH
Confidence 333445677999999999999999 8999998632 0 01 1367888 589999999987766654
Q ss_pred h-----CCCChhhhhhCCCCceee
Q psy754 311 S-----GIGPQEHLNDLNIPVIKN 329 (610)
Q Consensus 311 S-----gig~~~~l~~~gi~~~~~ 329 (610)
- .+|+..+.--.|+|..+|
T Consensus 236 rnWP~eRlG~~Pe~m~~GVPaHVD 259 (552)
T COG3573 236 RNWPTERLGRAPEQMLSGVPAHVD 259 (552)
T ss_pred hcCchhhcCCChHHHhcCCccccc
Confidence 4 334333333345555444
No 84
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.02 E-value=8e-10 Score=112.67 Aligned_cols=100 Identities=20% Similarity=0.317 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCCcc-CCCCCC---cceeeeecccccC-Cee-cchhHhhhhcccCCCCcEEecCceEEEEEEcCCCC-
Q psy754 201 LDAFLQAGMEAGYPLV-DYNGKT---QTGFARAQATLHK-RSR-RSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK- 273 (610)
Q Consensus 201 ~~~~~~~~~~~G~~~~-~~~~~~---~~g~~~~~~~~~~-g~~-~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~- 273 (610)
....++.+...|+++. +..+.. .+|......-.+. +.. .....+++....+++|++|+.++.+.+|..+ ++
T Consensus 89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~--~~~ 166 (518)
T COG0029 89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE--DGI 166 (518)
T ss_pred HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc--CCc
Confidence 3455677788999883 232321 1222111111111 111 1122334433445689999999999999998 56
Q ss_pred eEEEEEEEEcC-eEEEEEecceEEeccCCcC
Q psy754 274 KACGVLATIKG-IDHKILARKEVILSAGAFN 303 (610)
Q Consensus 274 rv~GV~~~~~g-~~~~i~a~~~VVlAaG~~~ 303 (610)
.+.||.+...+ +...+.| +.||||+|+++
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred eEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence 56699998543 5678999 58999999874
No 85
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.98 E-value=6.9e-09 Score=111.39 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=38.5
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+++.|++++.+ .|+.|..+ +++++||.+ ++. .+.+ +.||||+|++..
T Consensus 128 ~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~--~g~--~i~a-~~VVLATGG~~~ 176 (466)
T PRK08401 128 KHARELGVNFIRG-FAEELAIK--NGKAYGVFL--DGE--LLKF-DATVIATGGFSG 176 (466)
T ss_pred HHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE--CCE--EEEe-CeEEECCCcCcC
Confidence 4556789999876 89998876 689999886 343 5788 589999999865
No 86
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.95 E-value=4.9e-09 Score=113.13 Aligned_cols=51 Identities=31% Similarity=0.356 Sum_probs=41.7
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEE--EcCeEEEEEecceEEeccCCcC
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFN 303 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~--~~g~~~~i~a~~~VVlAaG~~~ 303 (610)
+..+++|+.+..|++|..+++ ++|.||... ++++...+.+ |.||+|+|+++
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred HhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 446789999999999998842 448998877 3677788889 68999999987
No 87
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.94 E-value=7.9e-10 Score=117.28 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
.+...+.+.|++|++++.|+.+..+ +++|++|.+...+...+|+| +.||-|+| ...|+.++|.
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--cccccccccccccccccccc-cccccccc---cccccccccc
Confidence 3444557789999999999999998 78999999985334778999 58999999 3577778875
No 88
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.88 E-value=4.1e-09 Score=111.89 Aligned_cols=36 Identities=36% Similarity=0.501 Sum_probs=33.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
+|||||||+|++|+++|+.||+ .|++|+||||++.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~-~G~~V~llEr~~~~ 40 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNSA 40 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHh-CCCeEEEEEcCCCC
Confidence 6999999999999999999999 99999999999754
No 89
>KOG0042|consensus
Probab=98.86 E-value=2.9e-09 Score=108.69 Aligned_cols=87 Identities=24% Similarity=0.199 Sum_probs=64.4
Q ss_pred CCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEE
Q psy754 219 NGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVI 296 (610)
Q Consensus 219 ~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VV 296 (610)
......|...+..+..+.+|.....++ -+.+.|.+++-..+|.+|+.+++ +++.|+++++ .|+++.|+| |.||
T Consensus 206 ~~~~L~Ga~VYyDGQ~nDaRmnl~vAl---TA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~A-k~VV 280 (680)
T KOG0042|consen 206 RKDNLKGAMVYYDGQHNDARMNLAVAL---TAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRA-KVVV 280 (680)
T ss_pred cccCceeEEEEecCCCchHHHHHHHHH---HHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEE-EEEE
Confidence 334455655555555566666554432 25688999999999999999874 6899999985 789999999 6899
Q ss_pred eccCCcCchhHHHHh
Q psy754 297 LSAGAFNSPKLLMLS 311 (610)
Q Consensus 297 lAaG~~~sp~LL~~S 311 (610)
-|+|.+ |..|..+-
T Consensus 281 NATGpf-sDsIr~Md 294 (680)
T KOG0042|consen 281 NATGPF-SDSIRKMD 294 (680)
T ss_pred eCCCCc-cHHHHhhc
Confidence 999986 66666653
No 90
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.84 E-value=1.7e-08 Score=106.43 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=38.2
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
|.++|||||||+|.+|+++|..|++ +|+|||+||+.+.+++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCcCc
Confidence 5678999999999999999999999 9999999999998864
No 91
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.84 E-value=1.2e-08 Score=109.61 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.+|||||||||++|+.||+.+|+ .|++|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence 46999999999999999999999 999999999873
No 92
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.81 E-value=2.2e-08 Score=112.46 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=32.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.+||||||||++|+++|++|++ .|++|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 5899999999999999999999 8999999999854
No 93
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.78 E-value=2.5e-08 Score=104.96 Aligned_cols=38 Identities=45% Similarity=0.792 Sum_probs=35.3
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.+|||||||+|++|++||+.||+ .|++|+|||++..+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCCC
Confidence 37999999999999999999999 999999999998754
No 94
>PRK10015 oxidoreductase; Provisional
Probab=98.78 E-value=2.1e-08 Score=106.44 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=34.3
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
++|||||||+|++|+++|+.||+ .|++|+||||++.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 36999999999999999999999 99999999999754
No 95
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.77 E-value=3.3e-08 Score=104.05 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.8
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
..++||||||+|++|+++|++|++ .|.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCccC
Confidence 347999999999999999999999 99999999998754
No 96
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.77 E-value=8.9e-08 Score=102.06 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=44.6
Q ss_pred ccCCCCcEEecCceEEEEEEcCCC--CeEEEEEEEEc--CeEEEEEecceEEeccCCcCc
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVT--KKACGVLATIK--GIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~--~rv~GV~~~~~--g~~~~i~a~~~VVlAaG~~~s 304 (610)
.+++.|++|+++++|++|+.+.++ ++|+||++..+ ++...+.+++.||+++|++..
T Consensus 235 ~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 235 YLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 467899999999999999996333 78999999863 334556677899999998853
No 97
>KOG2844|consensus
Probab=98.77 E-value=1.7e-08 Score=105.51 Aligned_cols=201 Identities=17% Similarity=0.174 Sum_probs=114.8
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCCCcEE-EEcCCCCCCCCcccCcccccccCCCCcccccccccccccccCCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKIL-LLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ 117 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~Vl-vLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (610)
+.+...||||||+|.+|+.+|++||+ .|.++. ++|+...-.
T Consensus 35 ~~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~~lts------------------------------------- 76 (856)
T KOG2844|consen 35 PLPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERSRLTS------------------------------------- 76 (856)
T ss_pred cCCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEeeeeecc-------------------------------------
Confidence 55566999999999999999999999 999954 445442211
Q ss_pred eeeecCcccccchhhhc-ccee-ecCCccchHHHHhcCCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEEeeCC
Q psy754 118 RCPWPSGKGVGGTSLIN-TMLY-TRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTE 195 (610)
Q Consensus 118 ~~~~~~g~~lGG~s~~~-~~~~-~r~~~~~~~~~~~~g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~~ 195 (610)
|++.+. +..+ .|+.+.+.+..+. +-...|.+.|+..+. ...++. .|-+.+....
T Consensus 77 -----------gttwhtagl~~~lr~~dv~~qlia~---------~~~~l~~~leeEtgl---~tGwiq-~G~~~lAs~~ 132 (856)
T KOG2844|consen 77 -----------GTTWHTAGLLWQLFPSDVELQLIAH---------TSRVLYRELEEETGL---HTGWIQ-NGGIFLASNR 132 (856)
T ss_pred -----------ccccccccceeeccCCchhHHHHHH---------HHHHHHHHHHHhcCC---Ccceec-CCceEEecCH
Confidence 222222 2222 2555656655432 223455566665443 122222 2445565554
Q ss_pred CCChhHHHHHHHHHHcCCCccCC------------CCCCcceeeeecccccCCeec--chhHhhhhcccCCCCcEEecCc
Q psy754 196 YNTPMLDAFLQAGMEAGYPLVDY------------NGKTQTGFARAQATLHKRSRR--SSAKDYIDPIKKRCNLTVKDSS 261 (610)
Q Consensus 196 ~~~~~~~~~~~~~~~~G~~~~~~------------~~~~~~g~~~~~~~~~~g~~~--~~~~~~l~~~~~~~gv~i~~~~ 261 (610)
......+.+......+|.+..-+ +-....|.-+.+ .+|... ..-. .|...+++.|+.|+.+|
T Consensus 133 ~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P---~DG~~DP~~lC~-ala~~A~~~GA~viE~c 208 (856)
T KOG2844|consen 133 QRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSP---GDGVMDPAGLCQ-ALARAASALGALVIENC 208 (856)
T ss_pred HHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecC---CCcccCHHHHHH-HHHHHHHhcCcEEEecC
Confidence 44444555555555666554111 111112222221 122211 1112 23345788999999999
Q ss_pred eEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 262 FVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 262 ~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
.|++|... .++..||++.. | .|++. .||-|||.|. -.+-.++|+
T Consensus 209 pV~~i~~~--~~~~~gVeT~~-G---~iet~-~~VNaaGvWA-r~Vg~m~gv 252 (856)
T KOG2844|consen 209 PVTGLHVE--TDKFGGVETPH-G---SIETE-CVVNAAGVWA-REVGAMAGV 252 (856)
T ss_pred CcceEEee--cCCccceeccC-c---ceecc-eEEechhHHH-HHhhhhcCC
Confidence 99999998 55666998865 3 58995 6999999664 333445554
No 98
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.73 E-value=9.7e-08 Score=101.55 Aligned_cols=42 Identities=36% Similarity=0.415 Sum_probs=36.8
Q ss_pred CcccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 37 DQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 37 ~~~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
|.-+..++||||||||++|+++|..|++ .|++|+||||.+..
T Consensus 12 ~~~~~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 53 (415)
T PRK07364 12 PSTRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPAE 53 (415)
T ss_pred CCCCccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence 4445557999999999999999999999 99999999999753
No 99
>PRK06185 hypothetical protein; Provisional
Probab=98.72 E-value=1.4e-07 Score=100.03 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=43.0
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
+..|++++.+++|+++..+ ++++++|.+...+...++++ +.||.|.|+. |. +-...|+
T Consensus 120 ~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a-~~vI~AdG~~-S~-vr~~~gi 177 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRA-DLVVGADGRH-SR-VRALAGL 177 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEe-CEEEECCCCc-hH-HHHHcCC
Confidence 4469999999999999888 67888888764333357899 5789999864 43 4444455
No 100
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.71 E-value=3e-08 Score=106.88 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=35.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
.+||||||||++|+++|..||+ +|++|+||||.....+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~GG 40 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRVGG 40 (487)
T ss_pred CccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCCCc
Confidence 6999999999999999999999 9999999999888764
No 101
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.69 E-value=1e-07 Score=103.47 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=43.9
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 308 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL 308 (610)
..+++.|++|++++.|++|+.+ ++++.+|++.+ |+ ++.|+ .||+|+|.+.+-..|
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~-g~--~~~ad-~vV~a~~~~~~~~~L 291 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILE--NGKAVGVKLAD-GE--KIYAK-RIVSNATRWDTFGKL 291 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeCC-CC--EEEcC-EEEECCChHHHHHHh
Confidence 5567889999999999999988 68999998764 43 57895 799999987655434
No 102
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.68 E-value=3.5e-08 Score=100.65 Aligned_cols=51 Identities=27% Similarity=0.439 Sum_probs=39.0
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
...+|++|+ +.+|++|..+ +++|.||.+. +|. .+.+ +.||+|+|++.+..+
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~-~g~--~~~a-~~vVlaTGtfl~G~~ 156 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTK-DGE--EIEA-DAVVLATGTFLNGCI 156 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEEC--TTEEEEEEET-TSE--EEEE-CEEEE-TTTGBTSEE
T ss_pred hcCCCeEEE-EcccceEEec--CCeEEEEEeC-CCC--EEec-CEEEEecccccCcee
Confidence 456899997 6799999999 7999999985 343 6889 589999999655444
No 103
>KOG2415|consensus
Probab=98.64 E-value=1.1e-07 Score=94.31 Aligned_cols=84 Identities=11% Similarity=0.136 Sum_probs=61.2
Q ss_pred chhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEc-----Ce-------EEEEEecceEEeccCCcC--ch
Q psy754 240 SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-----GI-------DHKILARKEVILSAGAFN--SP 305 (610)
Q Consensus 240 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~-----g~-------~~~i~a~~~VVlAaG~~~--sp 305 (610)
.-...||...+++.|++|+.+..+.+++++++ +.|.||.+.+- |. -..+.| +.-|+|-|.-+ |.
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~Lsk 260 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSLSK 260 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchhHH
Confidence 33445787889999999999999999999874 89999987632 21 146788 57888888544 57
Q ss_pred hHHHHhCCCChhhhhhCCCC
Q psy754 306 KLLMLSGIGPQEHLNDLNIP 325 (610)
Q Consensus 306 ~LL~~Sgig~~~~l~~~gi~ 325 (610)
+++.+-.+....+.+..||.
T Consensus 261 qi~kkf~Lr~n~e~qtYglG 280 (621)
T KOG2415|consen 261 QIIKKFDLRENCEPQTYGLG 280 (621)
T ss_pred HHHHHhCcccCCCcceeccc
Confidence 88887766554555555554
No 104
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.63 E-value=7.4e-08 Score=91.52 Aligned_cols=60 Identities=22% Similarity=0.389 Sum_probs=37.5
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHh
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS 311 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~S 311 (610)
|+...+++.++.++++++|+++..+ +++ .-|.+.+ + .+++| +.||+|+|.+..|+.+..-
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~-~--~~~~a-~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRD-G--RTIRA-DRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETT-S---EEEE-EEEEE---SSCSB---S-T
T ss_pred HHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEe-c--ceeee-eeEEEeeeccCCCCccccc
Confidence 5656677788889999999999998 444 4455543 3 46789 5899999998899887543
No 105
>KOG2853|consensus
Probab=98.62 E-value=1.2e-06 Score=84.87 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=35.4
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhc---CCCCcEEEEcCCCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSE---IPHWKILLLEAGHYFN 80 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~---~~G~~VlvLE~G~~~~ 80 (610)
..+.+.||+|||+|..|++.|+.|.+ +.|++|+|+|+.+.+.
T Consensus 82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 34457999999999999999999965 4789999999987653
No 106
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.58 E-value=4.6e-07 Score=92.63 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=49.9
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE--EcCeEEEEEecceEEeccCCcCchhHHHHhCCC
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 314 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~--~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgig 314 (610)
++..+.++.|+++.++++|+.|...+ +...-|.+. .++....++| +-|+|.||+ ++=.||++|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~--dg~W~v~~~~~~~~~~~~v~a-~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNG--DGRWEVKVKDLKTGEKREVRA-KFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECC--CCCEEEEEEecCCCCeEEEEC-CEEEECCch-HhHHHHHHcCCh
Confidence 44334456699999999999999984 333445544 3566778999 589999998 588899999983
No 107
>KOG4254|consensus
Probab=98.58 E-value=2.3e-07 Score=93.22 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=53.4
Q ss_pred cCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 234 HKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 234 ~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
+.|.......+.. +.+++.|.+|.+++.|.+|+.| +|++.||.+.+ |+ ++++ |.||-.|+.+.|=.=|+
T Consensus 259 p~GG~Gavs~aia-~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~d-G~--ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 259 PRGGMGAVSFAIA-EGAKRAGAEIFTKATVQSILLD--SGKAVGVRLAD-GT--EVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred CCCChhHHHHHHH-HHHHhccceeeehhhhhheecc--CCeEEEEEecC-Cc--EEEe-eeeecCCchHHHHHHhC
Confidence 3444444555433 6788999999999999999999 79999999985 43 5778 78999999888874444
No 108
>PRK07208 hypothetical protein; Provisional
Probab=98.58 E-value=1.2e-06 Score=94.91 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=37.2
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
|.+..||||||||++|+++|++|++ .|++|+|+|+.+.+++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCCCc
Confidence 4567899999999999999999999 8999999999888764
No 109
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.56 E-value=3.1e-07 Score=97.90 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=35.7
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
+....+|+|||||++|+++|.+|.+ .|++|+|+|+++.++
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~vG 46 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR-EGHTVVVFEREKQVG 46 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh-cCCeEEEEecCCCCc
Confidence 3446899999999999999999999 999999999997654
No 110
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.55 E-value=1.3e-07 Score=99.40 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=29.9
Q ss_pred EEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 47 IIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 47 IIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
||||+|++|+++|+.|++ .|++|+||||.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~-~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR-EGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHh-cCCcEEEEecCccc
Confidence 699999999999999999 99999999998754
No 111
>PLN02985 squalene monooxygenase
Probab=98.54 E-value=9.3e-07 Score=95.72 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=34.3
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.....+||||||+|++|+++|+.|++ .|++|+||||..
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~ 76 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDL 76 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcC
Confidence 44457999999999999999999999 999999999974
No 112
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.54 E-value=5e-07 Score=85.11 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=32.3
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
-+++|||+|++|++||+.|++ +|++|+|+|||.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE-AGREVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh-cCcEEEEEEcCCCc
Confidence 369999999999999999999 99999999999654
No 113
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.54 E-value=8.1e-08 Score=104.70 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=42.9
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
..+++.|++|++++.|++|..+ ++++++|++.+ |+ ++.|+ .||+|++...+...|+
T Consensus 227 ~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~-g~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 227 KLAEDLGGELRLNAEVIRIETE--GGRATAVHLAD-GE--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHCCCEEEECCeEEEEEee--CCEEEEEEECC-CC--EEECC-EEEECCcHHHHHHHhc
Confidence 4456789999999999999988 67888888753 33 57895 7999988655554443
No 114
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.53 E-value=5.6e-07 Score=90.77 Aligned_cols=35 Identities=43% Similarity=0.823 Sum_probs=32.8
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
|||||||+|++|+++|+.|++ .|.+|+|||+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence 799999999999999999998 89999999998653
No 115
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.52 E-value=7.6e-07 Score=93.89 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
...+||||||+|++|+++|+.|++ .|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence 346999999999999999999999 9999999999864
No 116
>PRK08244 hypothetical protein; Provisional
Probab=98.52 E-value=1.2e-06 Score=95.28 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++||+|||+|++|+++|..|++ .|.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 4899999999999999999999 9999999999865
No 117
>KOG2404|consensus
Probab=98.51 E-value=3.4e-07 Score=87.95 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=41.8
Q ss_pred CcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcCch
Q psy754 254 NLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSP 305 (610)
Q Consensus 254 gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~sp 305 (610)
-++|..+++|++|+.+ +|+|.||++.+ +|+...+.++ .||+|+|+|+-.
T Consensus 159 ~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~ys 208 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGYS 208 (477)
T ss_pred HHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecC-ceEEecCCcCcC
Confidence 4899999999999966 79999999985 6666677784 799999999863
No 118
>KOG1298|consensus
Probab=98.49 E-value=3.2e-07 Score=90.30 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=40.3
Q ss_pred ccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcC
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFN 303 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~ 303 (610)
++..+|+++..+ .|.+|+.+ ++.|.||.+.. .|++.+..| ..-|+|-|.+.
T Consensus 157 a~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~gee~~~~A-pLTvVCDGcfS 208 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKEGEEVEAFA-PLTVVCDGCFS 208 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCCCceEEEec-ceEEEecchhH
Confidence 456789998755 67888887 67999999984 566677888 58999999873
No 119
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.46 E-value=2.4e-07 Score=96.13 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
+|||||||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHh-cccccccchhcccc
Confidence 5899999999999999999999 99999999998654
No 120
>PRK06126 hypothetical protein; Provisional
Probab=98.45 E-value=3e-06 Score=93.39 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.++||+|||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-RGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence 46999999999999999999999 9999999998754
No 121
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.43 E-value=9.9e-07 Score=92.80 Aligned_cols=32 Identities=38% Similarity=0.729 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
|||||||+|++|+++|+.||+ .|++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 799999999999999999999 99999999997
No 122
>PRK06847 hypothetical protein; Provisional
Probab=98.43 E-value=2e-06 Score=90.20 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=34.2
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|.+..||||||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 3456899999999999999999999 9999999998754
No 123
>PRK06184 hypothetical protein; Provisional
Probab=98.41 E-value=1.9e-06 Score=93.81 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=33.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
++||||||+|++|+++|..|++ .|.+|+||||.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 6999999999999999999999 99999999998643
No 124
>PRK11445 putative oxidoreductase; Provisional
Probab=98.41 E-value=4.9e-06 Score=86.22 Aligned_cols=34 Identities=32% Similarity=0.666 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.|||+|||+|++|+++|+.|++ . ++|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence 3899999999999999999998 8 99999998864
No 125
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.41 E-value=3e-06 Score=85.92 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=42.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
...+..|++|+++++|..|++. ++.+.+|....+. .|.++ .||||.|--+...+
T Consensus 181 ~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~---~i~~~-~vvlA~Grsg~dw~ 234 (486)
T COG2509 181 EYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGE---EIEAD-YVVLAPGRSGRDWF 234 (486)
T ss_pred HHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCc---EEecC-EEEEccCcchHHHH
Confidence 4457889999999999999998 5668888876543 78995 89999996544443
No 126
>PRK07045 putative monooxygenase; Reviewed
Probab=98.41 E-value=2.7e-06 Score=89.52 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=34.3
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++||+|||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCcc
Confidence 46999999999999999999999 99999999999753
No 127
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.40 E-value=1.9e-06 Score=90.78 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=33.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++||+|||+|++|+++|+.|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence 5899999999999999999999 9999999999864
No 128
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.39 E-value=5e-07 Score=94.59 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=45.0
Q ss_pred hhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHH
Q psy754 246 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 308 (610)
Q Consensus 246 l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL 308 (610)
+....++.|++|+++++|+++..+ ++++..|. ..+++...++++ .||+|+|.+.+..|.
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEECC-EEEEeCCCcccCcee
Confidence 334456789999999999999887 56777766 344555678995 799999988666553
No 129
>PRK09126 hypothetical protein; Provisional
Probab=98.38 E-value=6.9e-06 Score=86.60 Aligned_cols=35 Identities=34% Similarity=0.591 Sum_probs=33.4
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++||||||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence 5999999999999999999999 9999999999975
No 130
>KOG2665|consensus
Probab=98.38 E-value=2.2e-06 Score=82.28 Aligned_cols=210 Identities=20% Similarity=0.212 Sum_probs=111.9
Q ss_pred cCCcccEEEECCCchHHHHHHHHhc-CCCCcEEEEcCCCCCCC-CcccCcccccccCCCCcccccccccccccccCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYFNY-LVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ 117 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~-~~G~~VlvLE~G~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (610)
-...||.||||+|+.|++.|++|.- .++++|+|||+.....- .+. .
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg-----------------------------h--- 92 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG-----------------------------H--- 92 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc-----------------------------c---
Confidence 3457999999999999999999875 27999999999875431 000 0
Q ss_pred eeeecCcccccchhhhccceeecCCccchHHHHhcCCCCCCcCchHHHHHHHhhhccccccCCCCCCCcceEEEeeCCCC
Q psy754 118 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYN 197 (610)
Q Consensus 118 ~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~~~g~~~w~~~~~~~~~~~~e~~~~~~~~~~~~~~~~G~l~~~~~~~~ 197 (610)
-+..+.++.|..+. .++.. + ...-.++.--|.+-++. -+...|.+-+...+.+
T Consensus 93 -----------NSgViHaGIYY~P~--SLKAk--l---CV~G~~LlY~yc~e~~I---------pyKk~GKLIVAt~~~E 145 (453)
T KOG2665|consen 93 -----------NSGVIHAGIYYKPG--SLKAK--L---CVEGRELLYEYCDEKKI---------PYKKTGKLIVATESEE 145 (453)
T ss_pred -----------ccceeeeeeeeCCc--ccchh--h---hhccHHHHHHHhhhcCC---------ChhhcceEEEEeChhh
Confidence 01122334443322 12110 0 00001111112111111 1223466666665556
Q ss_pred ChhHHHHHHHHHHcCCCcc-CCCCCC-------cceeeeecccccCCee-c-chhHhhhhcccCCCCcEEecCceEEEEE
Q psy754 198 TPMLDAFLQAGMEAGYPLV-DYNGKT-------QTGFARAQATLHKRSR-R-SSAKDYIDPIKKRCNLTVKDSSFVKKIL 267 (610)
Q Consensus 198 ~~~~~~~~~~~~~~G~~~~-~~~~~~-------~~g~~~~~~~~~~g~~-~-~~~~~~l~~~~~~~gv~i~~~~~V~~i~ 267 (610)
-+..+.+.+.....|++-. ...+.+ +.|... ......|.- + +....+. ..-+..|.++.++-++..|.
T Consensus 146 iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkA-l~sPhtGIvD~~~v~ls~~-edF~~~gg~i~~n~~l~g~~ 223 (453)
T KOG2665|consen 146 IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKA-LLSPHTGIVDWGSVTLSFG-EDFDFMGGRIYTNFRLQGIA 223 (453)
T ss_pred cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhh-hcCCCcceeehHHHHHHHH-HHHHHhcccccccceeccch
Confidence 6777777777777777652 222211 111110 111111211 1 1111122 23567899999999999997
Q ss_pred EcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 268 IDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 268 ~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
...+..--.-+.+. ++.-.+++. +.||-||| +.+.++-..||.
T Consensus 224 ~n~~~~~~Ypivv~-ngk~ee~r~-~~~vtc~g-l~sdr~aa~sgc 266 (453)
T KOG2665|consen 224 QNKEATFSYPIVVL-NGKGEEKRT-KNVVTCAG-LQSDRCAALSGC 266 (453)
T ss_pred hccCCCCCCceEEe-cCccceeEE-eEEEEecc-ccHhHHHHHhCC
Confidence 76331111223332 344446778 55665555 899999999985
No 131
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.37 E-value=3e-06 Score=89.11 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=31.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.+||+|||||++|+++|..|++ .|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 5899999999999999999999 99999999998
No 132
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.37 E-value=4.9e-06 Score=86.14 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=48.0
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHh
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS 311 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~S 311 (610)
..+++.|++++.+++|+++..+ ++++++|.+.. +....++|+ .||||+|+|-|..|+...
T Consensus 271 ~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~-g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 271 HRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRN-HRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHCCCEEEECcEEEEEEee--CCeEEEEEecC-CccceEECC-EEEEccCCCcCHHHHhhc
Confidence 4456889999999999999988 78899887643 323478995 799999999788887654
No 133
>PRK07190 hypothetical protein; Provisional
Probab=98.37 E-value=2.3e-06 Score=92.23 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.+||||||||++|+++|..|++ .|.+|+||||.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCc
Confidence 5899999999999999999999 9999999999865
No 134
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.36 E-value=2.9e-06 Score=89.35 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
+||||||+|++|+++|+.||+ .|++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 699999999999999999999 999999999864
No 135
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=8e-07 Score=91.90 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=38.5
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
....|++|+.+ .|+.|+.++ +.+|.||.+..+- .+.| +.|||++|+|-.-++
T Consensus 111 e~~~NL~l~q~-~v~dli~e~-~~~v~GV~t~~G~---~~~a-~aVVlTTGTFL~G~I 162 (621)
T COG0445 111 ENQPNLHLLQG-EVEDLIVEE-GQRVVGVVTADGP---EFHA-KAVVLTTGTFLRGKI 162 (621)
T ss_pred hcCCCceehHh-hhHHHhhcC-CCeEEEEEeCCCC---eeec-CEEEEeecccccceE
Confidence 35679999855 677887762 3479999987543 6889 689999999855444
No 136
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.34 E-value=5.1e-06 Score=91.22 Aligned_cols=38 Identities=39% Similarity=0.517 Sum_probs=34.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
..++||||||+|++|+++|..|++ .|.+|+||||.+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 356999999999999999999999 99999999998653
No 137
>PRK06834 hypothetical protein; Provisional
Probab=98.33 E-value=7.2e-06 Score=88.53 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=33.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++||||||+|++|+++|+.|++ .|.+|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 5999999999999999999999 9999999998864
No 138
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=6.8e-06 Score=90.38 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=45.9
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|+.++.+++|+.++ +|+|+||.+.+ +|+...|.| |.||||+|+++.
T Consensus 134 ~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 134 QGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred HHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 44567899999999999999863 48999999863 677778999 699999999874
No 139
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.32 E-value=5.6e-06 Score=87.65 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=32.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCC--CcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G--~~VlvLE~G~~ 78 (610)
.|||||||+|++|+++|..|++ .| ++|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~-~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ-AAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCCCCEEEEEeCCCc
Confidence 3899999999999999999998 75 99999999864
No 140
>PLN02697 lycopene epsilon cyclase
Probab=98.32 E-value=2.8e-06 Score=91.62 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=31.9
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
..|||||||+|++|+++|..|++ .|++|+|||++
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCc
Confidence 35999999999999999999999 99999999975
No 141
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.32 E-value=2.6e-06 Score=91.72 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|||||||+|++|+.+|..+|+ .|.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence 799999999999999999999 999999999874
No 142
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.29 E-value=4.2e-06 Score=87.98 Aligned_cols=34 Identities=38% Similarity=0.440 Sum_probs=32.2
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
||||||||++|+++|+.|++ .|.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCcc
Confidence 89999999999999999999 99999999999764
No 143
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.26 E-value=8e-06 Score=85.80 Aligned_cols=34 Identities=44% Similarity=0.449 Sum_probs=32.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCC-CcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G-~~VlvLE~G~~~ 79 (610)
||||||+|++|+++|..|++ .| ++|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCcc
Confidence 89999999999999999999 99 999999998653
No 144
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.26 E-value=1.2e-05 Score=84.75 Aligned_cols=33 Identities=42% Similarity=0.501 Sum_probs=31.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCC---CCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIP---HWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~---G~~VlvLE~G 76 (610)
.+||||||+|++|+++|+.|++ . |.+|+|+||.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence 6999999999999999999998 7 9999999996
No 145
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.26 E-value=8e-06 Score=89.95 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+.++||+|||+|++|+++|+.|++ .|.+|+||||.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 357999999999999999999999 9999999999864
No 146
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.26 E-value=9.2e-06 Score=88.72 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=50.6
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
..+.+.|++|+++++|++|..+ +++++||++.+ +++...|.| +.||+|||++ +..|+...|+
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEA-QVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CEEEECCCcc-hHHHHHhcCC
Confidence 3567889999999999999987 78999999864 455668999 5899999975 7888876664
No 147
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.25 E-value=8.9e-07 Score=67.36 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=29.3
Q ss_pred EECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 48 IVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 48 IVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
|||||++|+++|++|++ .|++|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHH-CCCcEEEEecCcccC
Confidence 89999999999999999 899999999998765
No 148
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.23 E-value=9e-06 Score=85.88 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
....||||||+|++|+++|..|++ .|++|+|+||.+.
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~ 38 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAE 38 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence 345899999999999999999999 9999999999864
No 149
>PRK07588 hypothetical protein; Provisional
Probab=98.22 E-value=1.7e-05 Score=83.61 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
||||||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHH-CCCceEEEeCCCC
Confidence 79999999999999999999 9999999999854
No 150
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.21 E-value=7.6e-06 Score=86.95 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=35.9
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCc-EEEEcCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHYFN 80 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~-VlvLE~G~~~~ 80 (610)
+.+++||+|||+|++|+++|++|.+ .|.. ++|+||.+...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDDVG 45 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCCcC
Confidence 4568999999999999999999999 8998 99999997654
No 151
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.19 E-value=1.9e-05 Score=83.07 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=32.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.+||+|||+|++|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4899999999999999999999 9999999999864
No 152
>KOG2852|consensus
Probab=98.18 E-value=1.1e-06 Score=83.45 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=44.4
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
++..+.++.||+++.+ +|.++.-+ ..|+.+|.... .+.-....+ .++|||+|. +|++||...+|
T Consensus 153 i~sea~k~~~V~lv~G-kv~ev~dE--k~r~n~v~~ae~~~ti~~~d~-~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFG-KVKEVSDE--KHRINSVPKAEAEDTIIKADV-HKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEe-eeEEeecc--cccccccchhhhcCceEEeee-eEEEEecCC-Cchhhcccccc
Confidence 3433445667999987 66777644 57888887662 232345667 479999997 58999988766
No 153
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.18 E-value=1.8e-05 Score=82.78 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=32.0
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+||||||+|++|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~~ 35 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKSV 35 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCCC
Confidence 799999999999999999999 9999999998753
No 154
>PRK07236 hypothetical protein; Provisional
Probab=98.14 E-value=4.7e-05 Score=80.06 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.7
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
..||||||||++|+++|..|++ .|++|+|+||.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 5899999999999999999999 9999999998853
No 155
>PRK07538 hypothetical protein; Provisional
Probab=98.13 E-value=1.7e-05 Score=84.16 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
||||||+|++|+++|+.|++ .|++|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCc
Confidence 79999999999999999999 9999999999864
No 156
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.09 E-value=1.1e-05 Score=87.29 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
.|+|||||++|+++|..|.+ .|+.|+++||.+.+++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TT-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHH-CCCCCeEEecCCCCCc
Confidence 38999999999999999999 9999999999987653
No 157
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.08 E-value=8.4e-06 Score=83.99 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=40.9
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
..+.+.|++++.+++|+.|..+ ++++++|.+. +| ++.|+ .||+|+|++ ++.|
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~-~g---~~~a~-~vV~a~G~~-~~~l 196 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTP-SG---DVQAD-QVVLAAGAW-AGEL 196 (337)
T ss_pred HHHHHcCCEEEccceEEEEEee--CCEEEEEEcC-CC---EEECC-EEEEcCChh-hhhc
Confidence 4567789999999999999887 6788888753 23 68894 799999975 5554
No 158
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.08 E-value=1.8e-05 Score=87.00 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=46.0
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCc
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 304 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~s 304 (610)
..+.+.|++|++++.|++|+.+ +|+|+||.+.+ ++....|.| |.||||+|+++.
T Consensus 127 ~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 127 QQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 4456789999999999999987 68999999853 677778999 689999999865
No 159
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.06 E-value=3.8e-06 Score=89.52 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=35.0
Q ss_pred CcccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 37 DQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 37 ~~~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
+.....+|||||||+|++|+++|+.||+ .|++|+|||+..
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~ 72 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKL 72 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 3344456999999999999999999999 999999999974
No 160
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=7.4e-06 Score=79.30 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=35.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
.||+||||||.+|+++|..|++ .|++||||||-+.+++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccCCC
Confidence 3899999999999999998888 9999999999988764
No 161
>PRK06116 glutathione reductase; Validated
Probab=97.92 E-value=7.4e-06 Score=87.96 Aligned_cols=36 Identities=39% Similarity=0.649 Sum_probs=33.4
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
|..+|||||||+|++|+++|.+|++ .|++|+|+|++
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~ 36 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK 36 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 3457999999999999999999999 99999999996
No 162
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.90 E-value=8.7e-05 Score=78.43 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+|+|||||++|+++|..|++ +|++|+|+||.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 69999999999999999999 9999999999754
No 163
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.89 E-value=1.1e-05 Score=84.93 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+.|||||||+|++|+++|+.|++ .|.+|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence 36899999999999999999999 8999999999864
No 164
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.87 E-value=1.1e-05 Score=85.16 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++|||||||+|++|+++|..|++ .|++|+|||+.+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~~ 39 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAAP 39 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCCC
Confidence 46999999999999999999999 9999999999753
No 165
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.87 E-value=1.1e-05 Score=84.95 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=33.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
++||||||+|++|+++|+.|++ .|++|+|||+++..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCc
Confidence 6899999999999999999999 99999999999764
No 166
>PRK08013 oxidoreductase; Provisional
Probab=97.86 E-value=1.1e-05 Score=85.18 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=33.3
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+|||||||+|++|+++|+.|++ .|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence 5999999999999999999999 9999999999875
No 167
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.86 E-value=9.6e-06 Score=86.53 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=36.9
Q ss_pred hhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCC
Q psy754 244 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA 301 (610)
Q Consensus 244 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~ 301 (610)
.+|...+.+.|++++.++ |+.+..++ ++.+++|++.+ |+ +++| +-||=|+|.
T Consensus 158 ~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~-g~--~i~a-d~~IDASG~ 209 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDD-GR--TIEA-DFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETT-SE--EEEE-SEEEE-SGG
T ss_pred HHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECC-CC--EEEE-eEEEECCCc
Confidence 366667778899999885 88888876 58899998864 43 7899 578888883
No 168
>PLN02463 lycopene beta cyclase
Probab=97.85 E-value=1.3e-05 Score=84.97 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
..|||||||+|++|+++|+.|++ .|++|+|||+.+.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~~ 62 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSPL 62 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCcc
Confidence 36999999999999999999998 8999999998753
No 169
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=1.2e-05 Score=86.72 Aligned_cols=37 Identities=41% Similarity=0.724 Sum_probs=34.0
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|...||+||||||++|+.+|.+|++ .|++|+|+|++.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 37 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKGK 37 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 4467999999999999999999999 999999999963
No 170
>PRK06370 mercuric reductase; Validated
Probab=97.84 E-value=1.3e-05 Score=86.35 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=34.0
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|..+|||||||+|++|+++|.+|++ .|++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 4457999999999999999999999 999999999874
No 171
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.83 E-value=1.3e-05 Score=85.77 Aligned_cols=34 Identities=41% Similarity=0.738 Sum_probs=32.3
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
+|||||||+|++|+.+|.+|++ .|++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE-HGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCcEEEecccc
Confidence 6999999999999999999999 999999999964
No 172
>KOG1399|consensus
Probab=97.82 E-value=6.7e-05 Score=78.84 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=34.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.-+|+|||||++||++|+.|.+ .|+.|+|+||.+.++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDDIG 42 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCCcc
Confidence 4689999999999999999999 999999999998764
No 173
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.82 E-value=1.5e-05 Score=84.42 Aligned_cols=35 Identities=37% Similarity=0.568 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+|||+|||+|++|+++|+.|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCCc
Confidence 5899999999999999999999 9999999999863
No 174
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.81 E-value=1.8e-05 Score=81.71 Aligned_cols=37 Identities=35% Similarity=0.589 Sum_probs=34.1
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
+||+|||||++|+++|++|++ .|.+|+|||+.+.+++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCCCC
Confidence 799999999999999999998 8999999999876654
No 175
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.81 E-value=1.6e-05 Score=85.23 Aligned_cols=36 Identities=31% Similarity=0.624 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++|||||||||++|+.+|.+|++ .|++|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCCC
Confidence 36999999999999999999999 9999999999864
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.80 E-value=1.6e-05 Score=87.31 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=33.9
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|.+.|||||||||++|+++|.+|++ .|++|+|+|++.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~ 37 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDD 37 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence 3456999999999999999999999 999999999975
No 177
>KOG0029|consensus
Probab=97.79 E-value=1.9e-05 Score=84.43 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=36.0
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
.+.+|||||||++|++||.+|.. .|.+|+|||+-+++++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCcCc
Confidence 46899999999999999999999 9999999999888763
No 178
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2e-05 Score=79.00 Aligned_cols=35 Identities=43% Similarity=0.694 Sum_probs=31.0
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCc-EEEEcCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 77 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~-VlvLE~G~ 77 (610)
+.|||||||||++|++||.++++ +|++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence 47999999999999999999999 9998 77777663
No 179
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=2e-05 Score=84.89 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=35.4
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
|..+||+||||+|++|..+|.+|++ .|++|+|+|+.+...
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~~~G 40 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYSTLG 40 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCccc
Confidence 3457999999999999999999999 999999999876543
No 180
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.77 E-value=2e-05 Score=82.88 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=32.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
++||+|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 5899999999999999999999 999999999875
No 181
>PLN02576 protoporphyrinogen oxidase
Probab=97.76 E-value=2.3e-05 Score=85.43 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=37.3
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCC-CCcEEEEcCCCCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAGHYFNY 81 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~-G~~VlvLE~G~~~~~ 81 (610)
....++||||||||++|+++|++|++ . |++|+|||+.+.+++
T Consensus 8 ~~~~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 8 AAASSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVGG 50 (496)
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCCCC
Confidence 34456899999999999999999998 8 999999999988764
No 182
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.75 E-value=1.9e-05 Score=84.53 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=31.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
+||+||||+|++|+++|.++++ .|++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 6999999999999999999999 99999999995
No 183
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=2.2e-05 Score=84.07 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=33.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+|||||||||++|+++|.+|++ .|++|+|+|+++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCCc
Confidence 6999999999999999999999 9999999999864
No 184
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.74 E-value=2.2e-05 Score=83.13 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=32.2
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
..+||+|||+|++|+++|..|++ .|++|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 36899999999999999999999 99999999986
No 185
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.74 E-value=2.5e-05 Score=84.23 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=34.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.+|||||||+|++|+.+|++|++ .|++|+|+|+++...
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~~~G 41 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYRNVG 41 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEecccccc
Confidence 36999999999999999999999 999999999976554
No 186
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=2.4e-05 Score=84.44 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.+||+||||+|++|+++|.+|++ .|++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 36999999999999999999999 999999999863
No 187
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.73 E-value=2.5e-05 Score=85.00 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=42.2
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEc--CeEEEEEecceEEeccCCcCchhH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--GIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~--g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
..+++.|++|++++.|++|+.+ ++++++|.+.++ +...++.|+ .||+++....+.+|
T Consensus 240 ~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~l 298 (492)
T TIGR02733 240 EALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLEL 298 (492)
T ss_pred HHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHh
Confidence 4456689999999999999998 678889887643 212368895 79988886544443
No 188
>PRK09897 hypothetical protein; Provisional
Probab=97.73 E-value=0.00036 Score=75.51 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHHHHhcC-CCCcEEEEcCCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFN 80 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~-~G~~VlvLE~G~~~~ 80 (610)
.+|+|||+|++|+++|.+|++. ...+|+|+|++...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 4799999999999999999872 346999999976543
No 189
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.71 E-value=2.8e-05 Score=81.17 Aligned_cols=34 Identities=44% Similarity=0.741 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHHHH--hcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRL--SEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~L--a~~~G~~VlvLE~G~~~ 79 (610)
||||||+|++|+++|++| ++ .|++|+|||+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence 899999999999999999 77 89999999998654
No 190
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=2.8e-05 Score=83.79 Aligned_cols=36 Identities=33% Similarity=0.619 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
+||+||||+|++|+++|.+|++ .|++|+|+|+.+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~~~~~ 38 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEGRSTL 38 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCce
Confidence 5999999999999999999999 99999999974433
No 191
>PTZ00367 squalene epoxidase; Provisional
Probab=97.69 E-value=3.2e-05 Score=84.40 Aligned_cols=35 Identities=40% Similarity=0.596 Sum_probs=32.9
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.+|||||||+|++|+++|+.|++ .|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 46999999999999999999999 999999999975
No 192
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.69 E-value=3.1e-05 Score=81.49 Aligned_cols=34 Identities=29% Similarity=0.626 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
||||||+|++|+++|+.|++ .|++|+|||+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence 89999999999999999998 89999999998653
No 193
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.67 E-value=3.1e-05 Score=83.68 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=32.2
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 75 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~ 75 (610)
..+||+||||+|++|+++|.+|++ .|++|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 357999999999999999999999 9999999998
No 194
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.67 E-value=3.2e-05 Score=83.88 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=32.9
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
|...||+||||+|++|+.+|.+|++ .|++|+|||++
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~~ 37 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDYV 37 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 4446999999999999999999999 99999999974
No 195
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.67 E-value=3.2e-05 Score=83.40 Aligned_cols=35 Identities=40% Similarity=0.749 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.+||+||||+|++|+.+|.+|++ .|++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence 46999999999999999999999 899999999976
No 196
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.66 E-value=3.8e-05 Score=82.88 Aligned_cols=35 Identities=37% Similarity=0.779 Sum_probs=32.3
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
+|||||||||++|+.+|.+|++ .|++|+|||+ +.+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~-~~~ 35 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEK-EYL 35 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEec-CCC
Confidence 4999999999999999999999 9999999999 444
No 197
>PLN02268 probable polyamine oxidase
Probab=97.65 E-value=3.8e-05 Score=82.15 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=34.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
+|||||||++|+++|++|.+ .|++|+|||+.+++++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCCc
Confidence 69999999999999999998 9999999999998864
No 198
>KOG2311|consensus
Probab=97.63 E-value=0.00011 Score=74.62 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=31.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
...|||||||+|.+|+-+|...|+ .|.+.+||-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh-cCCceEEeecc
Confidence 457999999999999999999998 99999999644
No 199
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.61 E-value=4.4e-05 Score=77.19 Aligned_cols=33 Identities=42% Similarity=0.679 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|||||||+|++|+++|..|++ .|.+|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 799999999999999999998 899999999885
No 200
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.61 E-value=4.7e-05 Score=82.18 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=34.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCC----CCcEEEEcCCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIP----HWKILLLEAGHYFNY 81 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~----G~~VlvLE~G~~~~~ 81 (610)
..||||||||++|+++|++|++ . |++|+|+|+.+.+++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcCcc
Confidence 3689999999999999999998 7 999999999988753
No 201
>PRK07233 hypothetical protein; Provisional
Probab=97.61 E-value=4.8e-05 Score=81.40 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=33.7
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
+|||||||++|+++|+.|++ .|++|+|||+.+.+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCCCC
Confidence 58999999999999999999 8999999999998864
No 202
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.60 E-value=4.8e-05 Score=82.00 Aligned_cols=34 Identities=41% Similarity=0.727 Sum_probs=32.0
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.+||+||||||++|+++|.+|++ .|++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 36999999999999999999999 99999999994
No 203
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.60 E-value=4.5e-05 Score=82.22 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=31.7
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
||+||||||++|+++|.+|++ .|++|+|+|+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 799999999999999999999 999999999975
No 204
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.59 E-value=4.9e-05 Score=81.80 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=33.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCC--CcEEEEcCCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYFNY 81 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G--~~VlvLE~G~~~~~ 81 (610)
+|||||||++|++||++|++ .| ++|+|+|+.+.+++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~-~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK-KGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH-hCCCCCEEEEEcCCCCcc
Confidence 59999999999999999998 78 89999999888764
No 205
>PRK14694 putative mercuric reductase; Provisional
Probab=97.59 E-value=5.1e-05 Score=81.84 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
+|||||||+|++|+++|.+|++ .|++|+|+|++.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~ 39 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT 39 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence 6999999999999999999999 999999999974
No 206
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.58 E-value=5.6e-05 Score=80.80 Aligned_cols=34 Identities=41% Similarity=0.682 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHHHHhcC---CCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~---~G~~VlvLE~G~ 77 (610)
|||||||+|++|+++|+.|++. .|++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999963 599999999964
No 207
>PTZ00058 glutathione reductase; Provisional
Probab=97.58 E-value=7.9e-05 Score=81.33 Aligned_cols=35 Identities=34% Similarity=0.653 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.+||+||||+|++|..+|.++++ .|++|+|||++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEeccc
Confidence 46999999999999999999999 999999999863
No 208
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.56 E-value=6.9e-05 Score=83.44 Aligned_cols=41 Identities=37% Similarity=0.436 Sum_probs=36.2
Q ss_pred CcccCCcccEEEECCCchHHHHHHHHhcCC-CCcEEEEcCCCC
Q psy754 37 DQDLLLEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAGHY 78 (610)
Q Consensus 37 ~~~~~~~~DvIIVGsG~~G~~~A~~La~~~-G~~VlvLE~G~~ 78 (610)
+..|.+++||+|||||++|+++|+.|++ . |.+|+|||+.+.
T Consensus 26 ~~~~~~~~dVlIVGAGPaGL~lA~~Lar-~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 26 PADLPDEVDVLIVGCGPAGLTLAAQLSA-FPDITTRIVERKPG 67 (634)
T ss_pred cccCCCCCCEEEECCCHHHHHHHHHHhc-CCCCcEEEEEcCCC
Confidence 3346778999999999999999999998 5 999999998754
No 209
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=6.4e-05 Score=78.39 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=33.3
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
|+|+|+|++|+++|++||+ +|++|+|+|++++.++
T Consensus 3 Vai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~GG 37 (485)
T COG3349 3 VAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRLGG 37 (485)
T ss_pred EEEEcccHHHHHHHHHHHh-CCCceEEEeccCccCc
Confidence 8999999999999999999 9999999999998864
No 210
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.53 E-value=6.4e-05 Score=78.25 Aligned_cols=33 Identities=42% Similarity=0.677 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHhcCC--CCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~--G~~VlvLE~G~~ 78 (610)
||||||+|++|+++|++|++ . |++|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~-~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQR-ARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHh-cCCCCeEEEEeCCCC
Confidence 89999999999999999997 5 999999999864
No 211
>PRK13748 putative mercuric reductase; Provisional
Probab=97.51 E-value=7e-05 Score=82.90 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=32.5
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.+||+||||+|++|+++|.+|++ .|++|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 36999999999999999999999 99999999997
No 212
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.51 E-value=8.9e-05 Score=78.24 Aligned_cols=39 Identities=36% Similarity=0.678 Sum_probs=35.3
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
..+||+||||+|++|.++|.++|+ .|++|+|+|+++...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~~lG 40 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGERLG 40 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecCCcC
Confidence 357999999999999999999999 999999999997544
No 213
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.51 E-value=0.00078 Score=66.22 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.-+|.|||||++|++||+.|++ -.+|+|.|++.+.+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rlG 43 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRLG 43 (447)
T ss_pred CcceEEEcccchhhhhHHhhhc--ccceEEEecccccc
Confidence 3579999999999999999997 48999999998875
No 214
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.51 E-value=0.0001 Score=86.29 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=47.2
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
..+++.|++|++++.|++|.-+ +++.+|++.. ++...++.++ .|+++.|...+..|+...|.
T Consensus 359 ~~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 359 AEARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCC
Confidence 3456789999999999999543 5788888763 3445579995 89999998777777776653
No 215
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.50 E-value=9.5e-05 Score=75.71 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=36.0
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
....||||||+|.+||++|++|.+ +|++|+|||..++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCcC
Confidence 347999999999999999999999 999999999988775
No 216
>PRK06996 hypothetical protein; Provisional
Probab=97.50 E-value=9e-05 Score=78.27 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=32.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCC----CcEEEEcCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPH----WKILLLEAGHY 78 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G----~~VlvLE~G~~ 78 (610)
+.++||+|||+|++|+++|+.|++ .| ++|+|+|+.+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCCC
Confidence 346899999999999999999998 76 57999999754
No 217
>PRK06753 hypothetical protein; Provisional
Probab=97.49 E-value=8.1e-05 Score=77.93 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=32.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
||||||||++|+++|..|++ .|++|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcc
Confidence 79999999999999999999 99999999999753
No 218
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.48 E-value=0.00028 Score=72.31 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=26.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.||+|+||.|++++++|..|.+....+++.||+-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 599999999999999999999834489999998764
No 219
>PLN02507 glutathione reductase
Probab=97.48 E-value=8e-05 Score=80.73 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=31.9
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 75 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~ 75 (610)
..+||+||||+|++|..+|.+|++ .|++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 347999999999999999999999 9999999996
No 220
>PLN02568 polyamine oxidase
Probab=97.48 E-value=0.0001 Score=80.26 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=35.5
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCC-----CcEEEEcCCCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPH-----WKILLLEAGHYFNY 81 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G-----~~VlvLE~G~~~~~ 81 (610)
.+..||||||+|++|+++|++|++ .| ++|+|+|+...+++
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~-~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh-cccccCCceEEEEeCCCCcCC
Confidence 345899999999999999999997 66 89999999988764
No 221
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00067 Score=66.51 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHHh
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS 311 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~S 311 (610)
+.-+|++|++++.-++|.-+ +.+|+|+.+++ +|+.+.+.-. .|.+--|-+-+..+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 35589999999999999777 78999999984 6777778774 699999988888887754
No 222
>PLN02546 glutathione reductase
Probab=97.45 E-value=8.8e-05 Score=81.02 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 75 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~ 75 (610)
..+|||||||+|++|..+|.+||+ .|++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 346999999999999999999999 9999999996
No 223
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.44 E-value=9.6e-05 Score=79.67 Aligned_cols=34 Identities=18% Similarity=0.486 Sum_probs=31.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCC-CCcEEEEcCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAG 76 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~-G~~VlvLE~G 76 (610)
.+||+||||+|++|..+|.++|+ . |++|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 47999999999999999999998 7 8999999984
No 224
>PRK14727 putative mercuric reductase; Provisional
Probab=97.42 E-value=0.00014 Score=78.64 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=34.6
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.+||+||||+|++|+.+|.+|++ .|.+|+|+|+++...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~~~G 52 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGADVIG 52 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccCcce
Confidence 46999999999999999999999 999999999986554
No 225
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.41 E-value=0.00012 Score=75.86 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=32.3
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
-||+|||||++|+.+|+.||+ .|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence 489999999999999999999 99999999987654
No 226
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.41 E-value=0.0036 Score=65.40 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=40.1
Q ss_pred cCCCCcEEecCceEEEEEEcCCC--CeEEEEEEEEcCeEEE--EEecceEEeccCCc
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVT--KKACGVLATIKGIDHK--ILARKEVILSAGAF 302 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~--~rv~GV~~~~~g~~~~--i~a~~~VVlAaG~~ 302 (610)
++..||++..+++|+.|+++.++ ..++++.+..+|...+ +..++.|++..|.+
T Consensus 217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 57899999999999999997543 3577888876665444 44557788888864
No 227
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.40 E-value=0.00014 Score=68.72 Aligned_cols=33 Identities=36% Similarity=0.665 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
||||||||++|+.+|.+|++ .|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEecccc
Confidence 79999999999999999998 9999999987753
No 228
>PRK10262 thioredoxin reductase; Provisional
Probab=97.40 E-value=0.00012 Score=74.90 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=32.2
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
++.+||||||+|++|+++|..|++ .|++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence 357999999999999999999999 89999999965
No 229
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.40 E-value=0.00013 Score=79.63 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=31.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 75 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~ 75 (610)
...|||+|||||++|+++|.+|++ .|++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 446999999999999999999999 9999999975
No 230
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.40 E-value=0.00015 Score=79.99 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=33.9
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.....+|+|||||++|+++|..|++ .|++|+|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 3456999999999999999999999 999999999975
No 231
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.39 E-value=0.00014 Score=80.69 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=31.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
+||+||||+|++|..+|.++++ .|++|+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 7999999999999999999999 99999999975
No 232
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.38 E-value=0.00016 Score=73.97 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=50.9
Q ss_pred hhhHHHHHHhhccccccccccccCC-CcccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 12 EFDYAVKSYIEDGIFEQLEYKSSNK-DQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
|=.....+|+.+++...+....... ...+ .=+++|||+|++|+++|+.||+ .|++|.|+|+.+.+++
T Consensus 94 dAtekA~dllr~avakar~le~le~~~~~v--~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsiGG 161 (622)
T COG1148 94 DATEKAKDLLRMAVAKARKLEPLEEIKVEV--SKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSIGG 161 (622)
T ss_pred hHHHHHHHHHHHHHHHHhhcCChhhHHHhh--ccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCcccc
Confidence 3556778888888776655553331 1122 2469999999999999999999 9999999999988763
No 233
>PLN02676 polyamine oxidase
Probab=97.37 E-value=0.00017 Score=77.79 Aligned_cols=39 Identities=41% Similarity=0.459 Sum_probs=35.3
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHYFNY 81 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~~~~ 81 (610)
..+||||||+|++|+++|++|++ .|. +|+|||+.+.+.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCCCC
Confidence 36899999999999999999999 898 6999999988764
No 234
>PRK05868 hypothetical protein; Validated
Probab=97.37 E-value=0.00016 Score=75.62 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=32.2
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
-||+|||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence 389999999999999999999 99999999998653
No 235
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.31 E-value=0.00017 Score=77.78 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=32.3
Q ss_pred cEEEECCCchHHHHHHHHhcCC------CCcEEEEcCCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIP------HWKILLLEAGHYFNY 81 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~------G~~VlvLE~G~~~~~ 81 (610)
+|||||||++|+++|++|++ . |.+|+|||+.+++++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~-~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEK-LKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHh-hhhccCCCccEEEEecCCCccc
Confidence 59999999999999999997 4 489999999988864
No 236
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.27 E-value=0.00022 Score=76.67 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=33.2
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
+|+|||+|++|+++|++|++ .|++|+|+|+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD-AGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCC
Confidence 48999999999999999999 9999999999987754
No 237
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.25 E-value=0.00021 Score=77.20 Aligned_cols=33 Identities=33% Similarity=0.669 Sum_probs=31.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
+||+||||+|++|..+|.++++ .|++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5999999999999999999999 99999999974
No 238
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00024 Score=69.19 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=33.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
+|||+|||+|.+|++||.+|++ +|+++.+|-+|...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQsA 37 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQSA 37 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCChhh
Confidence 5999999999999999999999 99999999999754
No 239
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.25 E-value=0.00028 Score=81.12 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=34.8
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||||++|++||++|++ .|++|+|+|+.+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEecccccC
Confidence 46899999999999999999999 999999999987654
No 240
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.22 E-value=0.0015 Score=69.91 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhcC-CCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~-~G~~VlvLE~G~~ 78 (610)
.|||||+|++|+.+|.+|.+. .+.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 599999999999999999862 4789999999864
No 241
>KOG2614|consensus
Probab=97.19 E-value=0.00031 Score=70.96 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=32.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+-+|||||||++|+++|..|++ .|++|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeeccc
Confidence 4579999999999999999999 9999999999544
No 242
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.18 E-value=0.00029 Score=76.81 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=31.3
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 75 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~ 75 (610)
...|||+|||||++|+++|.+|++ .|++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 346999999999999999999999 9999999974
No 243
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.18 E-value=0.00039 Score=78.09 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.7
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
....+|||||||++|+++|+.|++ .|++|+|+|+..+++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccCC
Confidence 346899999999999999999999 999999999988775
No 244
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.17 E-value=0.00032 Score=73.40 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=32.6
Q ss_pred EEEECCCchHHHHHHHHhcCCC--CcEEEEcCCCCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYFNY 81 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G--~~VlvLE~G~~~~~ 81 (610)
++|||||++||++|++|++ .+ ..|+|+|++++.++
T Consensus 3 i~IiG~GiaGLsaAy~L~k-~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQK-AGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHH-hCCCCcEEEEecCCCCCc
Confidence 8999999999999999999 78 99999999988764
No 245
>PRK12831 putative oxidoreductase; Provisional
Probab=97.16 E-value=0.00041 Score=74.47 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.3
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
....||+|||+|++|+++|++|++ .|++|+|+|+.+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 346899999999999999999999 99999999987654
No 246
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.15 E-value=0.0055 Score=64.32 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=36.5
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 308 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL 308 (610)
..+.+ |++|++++.|++|..+ +++ .+|.+. +|. .+.| +.||+|+|++ ++.|+
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~-~g~--~~~a-~~vV~a~G~~-~~~l~ 194 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERD--GEG-WQLLDA-NGE--VIAA-SVVVLANGAQ-AGQLA 194 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeC-CCC--EEEc-CEEEEcCCcc-ccccc
Confidence 44566 9999999999999876 454 334432 342 4789 4799999975 45443
No 247
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.13 E-value=0.00036 Score=72.82 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.9
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.||+|||+|.+|+.+|+.||+ .|++|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh-CCCcEEEEeccccc
Confidence 379999999999999999999 99999999987653
No 248
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.11 E-value=0.01 Score=61.46 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=39.8
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHH
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML 310 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~ 310 (610)
+.....++.|++|++++.|+++..+ +|.+.++++ +|.+ +.||-|||. ..+.++..
T Consensus 214 ~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~-~tvvWaaGv-~a~~~~~~ 268 (405)
T COG1252 214 YAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPA-DTVVWAAGV-RASPLLKD 268 (405)
T ss_pred HHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEec-CEEEEcCCC-cCChhhhh
Confidence 3444568899999999999999554 677765443 6999 478888885 44555544
No 249
>PLN02612 phytoene desaturase
Probab=97.09 E-value=0.00062 Score=75.00 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=34.7
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
..+|+|||+|++|+++|++|++ .|++|+|+|+.+...+
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDVLGG 130 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCCCCC
Confidence 5789999999999999999999 9999999999877643
No 250
>PLN02529 lysine-specific histone demethylase 1
Probab=97.05 E-value=0.00056 Score=76.42 Aligned_cols=39 Identities=33% Similarity=0.374 Sum_probs=35.8
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
.+.||||||+|++|+++|..|++ .|++|+|+|+.+.+++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCccCcC
Confidence 46899999999999999999999 9999999999887754
No 251
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.04 E-value=0.00054 Score=71.69 Aligned_cols=41 Identities=32% Similarity=0.488 Sum_probs=32.3
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
|+++|||||+|.|..-+.+|..|++ .|++||.||+.+.++.
T Consensus 1 m~~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCcCC
Confidence 5689999999999999999999999 9999999999999864
No 252
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.04 E-value=0.00073 Score=53.29 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=31.7
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
++|||+|..|+-+|..|++ .|.+|+|||+.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAE-LGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHH-hCcEEEEEeccchhh
Confidence 7999999999999999999 999999999998743
No 253
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.00 E-value=0.00057 Score=73.66 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=43.9
Q ss_pred cccCCCCcEEecCceEEEEEEcCC--CC-eEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPV--TK-KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~--~~-rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
...++.|++|+++++|++|+.+++ +. ++++|.+.+++....+.++ .||+|+......+||-
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLP 290 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCC
Confidence 344568999999999999998732 22 4888888533211357885 7999999887777764
No 254
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.96 E-value=0.00082 Score=72.50 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=34.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||+|++|+++|..|++ .|++|+|+|+.+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCCC
Confidence 45799999999999999999999 999999999987654
No 255
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.96 E-value=0.00067 Score=72.06 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCC-CcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G-~~VlvLE~G~~ 78 (610)
.|+|||+|++|+++|..|++ .| .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~-~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK-HSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCCCEEEEecCCc
Confidence 58999999999999999998 77 59999999764
No 256
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.95 E-value=0.0007 Score=79.14 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=34.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||||++|+++|++|++ .|++|+|+|+.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCCc
Confidence 35799999999999999999999 899999999987664
No 257
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.93 E-value=0.0007 Score=78.45 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=34.7
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
..+|+|||||++|++||++|++ .|++|+|+|+.+...+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~~GG 343 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHDLGG 343 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCCCCc
Confidence 5789999999999999999999 9999999999877653
No 258
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.93 E-value=0.0009 Score=71.70 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=34.0
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
...||+|||+|++|+++|+.|++ .|++|+|+|+.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 46899999999999999999999 99999999998654
No 259
>PLN02487 zeta-carotene desaturase
Probab=96.90 E-value=0.0012 Score=72.06 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=43.7
Q ss_pred cccCCCCcEEecCceEEEEEEcCC-CC--eEEEEEEEEcCeEEEEEecceEEeccCCcCchhHH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPV-TK--KACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 308 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~-~~--rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL 308 (610)
...++.|++|++++.|++|+.+.+ ++ +++||++..++....+.++ .||+|++.....+||
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 345788999999999999999742 22 5899998522333357884 799999976555554
No 260
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.89 E-value=0.00077 Score=72.53 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++||||+|++|+++|.+|++ .|++|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCcc
Confidence 69999999999999999999 9999999999754
No 261
>KOG4716|consensus
Probab=96.86 E-value=0.00088 Score=65.45 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=32.5
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
..+||.||||+|-+|++||.+.|. .|++|.+||-=.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeecc
Confidence 346999999999999999999998 999999998543
No 262
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.80 E-value=0.0012 Score=75.64 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=34.5
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
..-+|+|||||++|+++|+.|++ .|++|+|+|+.+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEecccccC
Confidence 45689999999999999999999 999999999987654
No 263
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.78 E-value=0.0012 Score=74.27 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=34.5
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||||++|+++|+.|++ .|++|+|+|+.+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCCC
Confidence 35799999999999999999999 999999999987654
No 264
>PRK07846 mycothione reductase; Reviewed
Probab=96.74 E-value=0.0012 Score=70.76 Aligned_cols=33 Identities=33% Similarity=0.725 Sum_probs=28.4
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+||+||||+|++|..+|.+ . .|++|+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~-~G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--F-ADKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--H-CCCeEEEEeCCCC
Confidence 4999999999999988866 3 6999999998643
No 265
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.71 E-value=0.0016 Score=70.01 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=34.2
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||+|++|+++|+.|++ .|++|+|+|+.+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~~g 176 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDKAG 176 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCCC
Confidence 35799999999999999999999 899999999987653
No 266
>KOG1335|consensus
Probab=96.70 E-value=0.0022 Score=63.96 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=34.6
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.+||+||||+|++|-++|.+.|+ .|++...+|+.....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~~LG 75 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRGTLG 75 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH-hcceeEEEeccCccC
Confidence 37999999999999999999999 999999999966554
No 267
>KOG2960|consensus
Probab=96.70 E-value=0.00069 Score=61.70 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=31.9
Q ss_pred cccEEEECCCchHHHHHHHHhc-CCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~-~~G~~VlvLE~G~~ 78 (610)
+.||||||+|-+|+++||++++ ++.++|.+||+.-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 4699999999999999999995 48899999998644
No 268
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.69 E-value=0.0015 Score=74.69 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
...+|+|||||++|+++|++|++ .|++|+|+|+.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 46799999999999999999999 99999999986543
No 269
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.61 E-value=0.0025 Score=68.29 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=34.0
Q ss_pred CcccEEEECCCchHHHHHHHHhc-CCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~-~~G~~VlvLE~G~~~~ 80 (610)
....|+|||||++|+.+|..|++ ..|++|+|+|+.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 35689999999999999999984 2699999999998764
No 270
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.60 E-value=0.0015 Score=74.70 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHhcCC--CCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~--G~~VlvLE~G~~~ 79 (610)
+|+|||+|++|+++|..|++ . |++|+|+|+.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~-~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKL-LDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHH-hCCCCeEEEEecCCCC
Confidence 69999999999999999998 6 8999999998753
No 271
>PLN03000 amine oxidase
Probab=96.59 E-value=0.002 Score=72.60 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=35.8
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
...||||||+|++|+++|+.|++ .|++|+|+|+.+.+.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcCCC
Confidence 46899999999999999999998 9999999999988764
No 272
>KOG0685|consensus
Probab=96.56 E-value=0.0022 Score=65.97 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=34.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
..-|||||||++|++||.+|-+..+..|+|+|..+++++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 457999999999999999999735569999999998864
No 273
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.55 E-value=0.002 Score=69.21 Aligned_cols=33 Identities=33% Similarity=0.671 Sum_probs=27.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+||+||||+|++|..+|.+ . .|++|+|+|++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~-~g~~V~lie~~~~ 34 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--F-ADKRIAIVEKGTF 34 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--H-CCCeEEEEeCCCC
Confidence 5999999999999887644 4 6999999998643
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.52 E-value=0.018 Score=60.32 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=40.1
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
.++.|+++++++.|++|..+ ++. ..|.+. +++ ++.++ .||+|+|....+.++..+|+
T Consensus 193 l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~-~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl 249 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKT--DSG-IRATLD-SGR--SIEVD-AVIAAAGLRPNTALARRAGL 249 (377)
T ss_pred HHhCCCEEEECCeEEEEEcc--CCE-EEEEEc-CCc--EEECC-EEEECcCCCcchHHHHHCCC
Confidence 34568899999999999765 333 234443 343 68895 89999997666677777776
No 275
>KOG3855|consensus
Probab=96.49 E-value=0.0026 Score=64.16 Aligned_cols=38 Identities=42% Similarity=0.665 Sum_probs=32.9
Q ss_pred CCcccEEEECCCchHHHHHHHHhcC---CCCcEEEEcCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGHY 78 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~---~G~~VlvLE~G~~ 78 (610)
...|||||||||++|.+.|..|..+ .-+||++||.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3479999999999999999999864 4589999999954
No 276
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.44 E-value=0.0024 Score=68.89 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|+||||+|++|+.+|..|++ .|++|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 79999999999999999999 899999999875
No 277
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.44 E-value=0.003 Score=70.84 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=34.4
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||+|++|+++|+.|++ .|++|+|+|+.+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 35799999999999999999999 999999999987653
No 278
>PLN02976 amine oxidase
Probab=96.41 E-value=0.003 Score=73.91 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=35.2
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
..+||+|||+|++|+++|+.|++ .|++|+|||+.+.+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccCCCC
Confidence 45899999999999999999999 9999999999877653
No 279
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.40 E-value=0.003 Score=71.79 Aligned_cols=36 Identities=17% Similarity=0.436 Sum_probs=32.5
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
....|+|||+|++|+++|++|++ .|++|+|+|+.+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGLKI 417 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEccccc
Confidence 35689999999999999999999 9999999998643
No 280
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.35 E-value=0.0036 Score=67.39 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=34.3
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||+|++|+++|..|++ .|++|+|+|+.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCC
Confidence 45799999999999999999999 899999999987653
No 281
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.35 E-value=0.027 Score=60.72 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=37.0
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
.++.|+++++++.|++|..+ ++.+ .+.+..++...++.++ .||+|+|......+
T Consensus 223 l~~~gV~i~~~~~V~~i~~~--~~~v-~v~~~~gg~~~~i~~D-~vi~a~G~~p~~~~ 276 (462)
T PRK06416 223 LKKRGIKIKTGAKAKKVEQT--DDGV-TVTLEDGGKEETLEAD-YVLVAVGRRPNTEN 276 (462)
T ss_pred HHHcCCEEEeCCEEEEEEEe--CCEE-EEEEEeCCeeEEEEeC-EEEEeeCCccCCCC
Confidence 34568999999999999765 3333 2444444444578995 79999996544444
No 282
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.33 E-value=0.0043 Score=64.31 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.4
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
..+|+|||+|++|+.+|..|++ .|++|+|+|+.+.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCCC
Confidence 3589999999999999999998 899999999987643
No 283
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.29 E-value=0.027 Score=60.76 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-+++|||+|..|+-+|..|++ .|.+|+|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCC
Confidence 369999999999999999998 8999999998743
No 284
>PRK06370 mercuric reductase; Validated
Probab=96.29 E-value=0.029 Score=60.55 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=35.4
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchh
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK 306 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~ 306 (610)
.++.|+++++++.|++|..+ ++.+ .|.+...+...++.++ .||+|+|.-....
T Consensus 222 l~~~GV~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~i~~D-~Vi~A~G~~pn~~ 274 (463)
T PRK06370 222 LEREGIDVRLNAECIRVERD--GDGI-AVGLDCNGGAPEITGS-HILVAVGRVPNTD 274 (463)
T ss_pred HHhCCCEEEeCCEEEEEEEc--CCEE-EEEEEeCCCceEEEeC-EEEECcCCCcCCC
Confidence 35679999999999999765 3322 3444322333468895 7999999654444
No 285
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.28 E-value=0.024 Score=61.17 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.++|||+|..|+-+|..|++ .|.+|+|+|+++.
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~ 200 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFAR-LGSEVTILQRSDR 200 (463)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCc
Confidence 68999999999999999998 8999999998753
No 286
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.28 E-value=0.0044 Score=67.06 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=33.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
..+|+|||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 4699999999999999999999 99999999998754
No 287
>KOG1276|consensus
Probab=96.22 E-value=0.0044 Score=62.86 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=33.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC--cEEEEcCCCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGHYFNYL 82 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~--~VlvLE~G~~~~~~ 82 (610)
.-+|+|||+|++|+++||+|++ .+. .|+|.|++++..++
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r-~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLAR-LGPDVTITLFEASPRVGGW 51 (491)
T ss_pred cceEEEECCchhHHHHHHHHHh-cCCCceEEEEecCCcccce
Confidence 5789999999999999999998 555 46679999998754
No 288
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.22 E-value=0.0043 Score=65.60 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=32.4
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.-|+|||||++|+.+|.+|++..|++|.|+|+.+.+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4699999999999999987533799999999998875
No 289
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.19 E-value=0.0051 Score=68.94 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=34.7
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
...+|+|||+|++|+++|+.|++ .|++|+|+|+.+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCCCC
Confidence 35789999999999999999999 999999999998754
No 290
>KOG0405|consensus
Probab=96.13 E-value=0.006 Score=60.12 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=35.2
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
....+||++|||+|-+|+.+|++.|+ .|.+|.|+|..-..
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f~l 55 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPFGL 55 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHh-cCceEEEEecCCCc
Confidence 33448999999999999999999999 99999999988543
No 291
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.12 E-value=0.04 Score=59.50 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=36.8
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEE-EcCeEEEEEecceEEeccCCcCchhH
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLAT-IKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~-~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
.++.|++|++++.|+++..+ ++.+ .|.+. .+|...++.++ .||+|+|...+..+
T Consensus 223 l~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~ 277 (466)
T PRK07818 223 YKKLGVKILTGTKVESIDDN--GSKV-TVTVSKKDGKAQELEAD-KVLQAIGFAPRVEG 277 (466)
T ss_pred HHHCCCEEEECCEEEEEEEe--CCeE-EEEEEecCCCeEEEEeC-EEEECcCcccCCCC
Confidence 35679999999999999755 3333 34443 24544578995 79999996544443
No 292
>PRK13984 putative oxidoreductase; Provisional
Probab=96.09 E-value=0.0076 Score=67.33 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=34.8
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
....+|+|||+|++|+++|..|++ .|++|+|+|+.+...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~~g 319 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSKPG 319 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCCC
Confidence 346789999999999999999999 999999999987643
No 293
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.07 E-value=0.054 Score=59.20 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=42.4
Q ss_pred CCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHH
Q psy754 252 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLM 309 (610)
Q Consensus 252 ~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~ 309 (610)
+.|++|++++.|+++.-+ ++++++|.+.+ +++..++.++ .||+|.|...+..+|.
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHh
Confidence 368999999999999765 57888888864 3445678995 7999999766566654
No 294
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.06 E-value=0.054 Score=59.27 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=44.2
Q ss_pred CCCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHH
Q psy754 252 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLML 310 (610)
Q Consensus 252 ~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~ 310 (610)
..|+++++++.|++|..+ ++++++|.+.+ ++...++.++ .|++|.|...++.++..
T Consensus 399 ~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhh
Confidence 468999999999999765 67899998874 4555679995 89999998766666543
No 295
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.98 E-value=0.032 Score=64.13 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=41.9
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
.++.|+++++++.|++|..+ +++.+|.+.+ |+ ++.++ .||+|+|.-.+..|+..+|+
T Consensus 192 l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~d-G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGA---TKADRIRFKD-GS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHcCCEEEeCCceEEEEcC---CceEEEEECC-CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 34668999999999998643 4667777653 43 68895 89999997666666666665
No 296
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.87 E-value=0.0091 Score=66.03 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=34.2
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
..-+|+|||+|++|+++|+.|++ .|++|+|+|+.+...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCCC
Confidence 35689999999999999999998 899999999987654
No 297
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.87 E-value=0.042 Score=63.31 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=42.6
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
.++.|++|++++.|++|..+. .+.+..|.+. +|+ .+.++ .||+|+|.-.+..|+..+|+
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEG-VEARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecC-CCceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 456799999999999996542 1345556554 343 68895 89999997777777767775
No 298
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.81 E-value=0.053 Score=58.36 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=27.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 58888999999888888887 788888888774
No 299
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.78 E-value=0.051 Score=58.30 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=39.6
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
++.|++++++++|++|..+ +++..+.. ++. ++.++ .||+|+|...+..+|..+|+
T Consensus 202 ~~~gI~v~~~~~v~~i~~~---~~~~~v~~--~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGE---DKVEGVVT--DKG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHCCCEEEcCCEEEEEecC---CcEEEEEe--CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 4568899999999999432 45555543 232 58895 79999997766677877776
No 300
>PRK10262 thioredoxin reductase; Provisional
Probab=95.75 E-value=0.11 Score=52.90 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=40.7
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEc---CeEEEEEecceEEeccCCcCchhHH
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK---GIDHKILARKEVILSAGAFNSPKLL 308 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~---g~~~~i~a~~~VVlAaG~~~sp~LL 308 (610)
.++.|+++++++.|++|.-+ ++++.+|++.+. +...++.++ .||++.|.-....++
T Consensus 195 l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF 253 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh
Confidence 45678999999999999655 456788887642 344578995 899999965444433
No 301
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.69 E-value=0.083 Score=56.64 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.|+|||+|..|+-+|..|++ .|.+|+|+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~-~G~~Vtlv~~~ 304 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALR-LGAEVHCLYRR 304 (449)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEeec
Confidence 69999999999999999998 89999999866
No 302
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.49 E-value=0.084 Score=57.12 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEE-cCeEEEEEecceEEeccCCcCchh
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPK 306 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-~g~~~~i~a~~~VVlAaG~~~sp~ 306 (610)
++.|++|++++.|++|..+ ++.+ .|.+.+ +++...+.++ .||+|+|......
T Consensus 235 ~~~gi~i~~~~~v~~i~~~--~~~v-~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~ 287 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTG--GKGV-SVAYTDADGEAQTLEVD-KLIVSIGRVPNTD 287 (475)
T ss_pred HHcCcEEEeCcEEEEEEEc--CCEE-EEEEEeCCCceeEEEcC-EEEEccCCccCCC
Confidence 4568999999999999766 3443 344443 2444578995 7999999665444
No 303
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.29 E-value=0.018 Score=60.71 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=41.6
Q ss_pred hhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHHhCC
Q psy754 245 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 313 (610)
Q Consensus 245 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~Sgi 313 (610)
++....++.|+++++++.|+++..+ +.+ .|.+. +|+ ++.++ .||+|+|......|+..+|+
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~~---~~~-~v~l~-~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVDG---EKV-ELTLQ-SGE--TLQAD-VVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEcC---CEE-EEEEC-CCC--EEECC-EEEECCCCChhhHHHHhcCC
Confidence 3434456789999999999999542 222 24433 343 58895 79999997766666666665
No 304
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.22 E-value=0.11 Score=56.16 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=37.7
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH--HHHhCC
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL--LMLSGI 313 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L--L~~Sgi 313 (610)
.++.|+++++++.|++|..+ ++.+. |.+. +|+ ++.++ .||+|+|.-....+ |..+|+
T Consensus 228 L~~~gV~i~~~~~v~~v~~~--~~~~~-v~~~-~g~--~l~~D-~vl~a~G~~pn~~~l~l~~~gl 286 (466)
T PRK07845 228 FARRGMTVLKRSRAESVERT--GDGVV-VTLT-DGR--TVEGS-HALMAVGSVPNTAGLGLEEAGV 286 (466)
T ss_pred HHHCCcEEEcCCEEEEEEEe--CCEEE-EEEC-CCc--EEEec-EEEEeecCCcCCCCCCchhhCc
Confidence 35679999999999999765 34332 3332 343 58885 79999997655544 344554
No 305
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.18 E-value=0.016 Score=62.12 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcC-CCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~-~G~~VlvLE~G~~~ 79 (610)
.|||||+|++|+++|..|++. .+.+|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 499999999999999999972 24599999998764
No 306
>PRK06116 glutathione reductase; Validated
Probab=95.14 E-value=0.12 Score=55.51 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=34.4
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchh
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK 306 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~ 306 (610)
.++.|+++++++.|++|..++ ++.+ .|.+. +|+ ++.++ .||+|+|.-....
T Consensus 218 L~~~GV~i~~~~~V~~i~~~~-~g~~-~v~~~-~g~--~i~~D-~Vv~a~G~~p~~~ 268 (450)
T PRK06116 218 MEKKGIRLHTNAVPKAVEKNA-DGSL-TLTLE-DGE--TLTVD-CLIWAIGREPNTD 268 (450)
T ss_pred HHHCCcEEECCCEEEEEEEcC-CceE-EEEEc-CCc--EEEeC-EEEEeeCCCcCCC
Confidence 346789999999999997753 2323 24433 343 58895 7999999654433
No 307
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.12 E-value=0.024 Score=60.29 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=33.3
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.+.+|||||+|.+|+.+|.+|.. .+.+|+|||+.+...
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~~ 46 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHML 46 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCcc
Confidence 35789999999999999999987 789999999887653
No 308
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.05 E-value=0.22 Score=50.03 Aligned_cols=55 Identities=25% Similarity=0.215 Sum_probs=39.4
Q ss_pred CCcEEecCceEEEEEEcCCCCeEEEEEEEE--cCeEEEEEecceEEeccCCcCchhHHHHh
Q psy754 253 CNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS 311 (610)
Q Consensus 253 ~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~--~g~~~~i~a~~~VVlAaG~~~sp~LL~~S 311 (610)
.|+++++++.++++..+ +++.+|++.+ .++..++.++ .||+|+|.-.+..++..+
T Consensus 190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 48899999999999654 3677777653 3555688995 899999965555555443
No 309
>KOG4405|consensus
Probab=94.99 E-value=0.03 Score=56.49 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=37.8
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
++++|||||||.|.-=..+|..-++ .|.+||=||+.++++.
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYYGG 45 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCccccCC
Confidence 5678999999999999999999998 9999999999998853
No 310
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.98 E-value=0.024 Score=60.16 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=33.8
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
-.|.|||||++|+.+|..|++ .|+.|++.|+-+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCCc
Confidence 789999999999999999999 999999999988765
No 311
>PRK12831 putative oxidoreductase; Provisional
Probab=94.88 E-value=0.19 Score=54.04 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.|+|||+|..|+-+|..|++ .|.+|+|+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r-~Ga~Vtlv~r~ 313 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALR-LGAEVHIVYRR 313 (464)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCEEEEEeec
Confidence 69999999999999999998 89999999865
No 312
>KOG1439|consensus
Probab=94.78 E-value=0.017 Score=58.16 Aligned_cols=40 Identities=30% Similarity=0.587 Sum_probs=37.0
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
|.++|||||+|.|..=|.++..|+. .|.+||.+||.+..+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYYG 40 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCCC
Confidence 4567999999999999999999999 999999999999885
No 313
>KOG2403|consensus
Probab=94.48 E-value=0.072 Score=56.00 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=32.4
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.....||.+|||+|.+|+-+|..|++ .|.+|.++-+-
T Consensus 51 ~~~~~~da~vvgaggAGlr~~~~lae-~g~~~a~itkl 87 (642)
T KOG2403|consen 51 QVDHTYDAVVVGAGGAGLRAARGLAE-LGEKTAVITKL 87 (642)
T ss_pred eeeeeceeEEEeccchhhhhhhhhhh-cCceEEEEecc
Confidence 34456999999999999999999999 99999998654
No 314
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.45 E-value=0.03 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
--|.|||+|.+|+-+||++|+ .|.+|.|.|--+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAK-RGVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHHH-cCCcEEEEEccc
Confidence 348999999999999999999 999999999654
No 315
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.34 E-value=0.2 Score=54.19 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=35.4
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
.++.|+++++++.|++|..+ ++....|.+. ++. ++.++ .||+|+|......+
T Consensus 241 L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~-~g~--~i~~D-~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLN--ADGSKHVTFE-SGK--TLDVD-VVMMAIGRVPRTQT 292 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEc--CCceEEEEEc-CCC--EEEcC-EEEEeeCCCcCccc
Confidence 34678999999999999765 2333344443 343 68895 79999996544444
No 316
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.054 Score=54.14 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=35.3
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.|||||+|.|+.=+..+..|+- .|.+|+.||+.+..+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCccC
Confidence 6999999999999999999998 899999999999875
No 317
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=94.28 E-value=0.22 Score=53.94 Aligned_cols=54 Identities=17% Similarity=0.008 Sum_probs=35.6
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHH
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 308 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL 308 (610)
++.|++|++++.++++... ++.+ .|++.+++...++.++ .||+|+|-..++.+|
T Consensus 231 ~~~gV~i~~~~~v~~v~~~--~~~~-~v~~~~~~~~~~i~~D-~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQI--EAKV-KVTFTDSTNGIEEEYD-TVLLAIGRDACTRKL 284 (484)
T ss_pred HHcCCEEEeCceEEEEEEc--CCeE-EEEEecCCcceEEEeC-EEEEEecCCcCCCcC
Confidence 4568999999999998765 3332 2444332212368895 799999976555543
No 318
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.15 E-value=0.05 Score=56.63 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHHHhc--CCCCcEEEEcCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSE--IPHWKILLLEAGHYFN 80 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~--~~G~~VlvLE~G~~~~ 80 (610)
.|||||+|++|+.+|.+|.+ .++.+|+|+|+.+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~ 38 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP 38 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc
Confidence 38999999999999999964 2578999999987653
No 319
>KOG1800|consensus
Probab=94.13 E-value=0.058 Score=54.12 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=32.7
Q ss_pred ccEEEECCCchHHHHHHHHhcC-CCCcEEEEcCCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFN 80 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~-~G~~VlvLE~G~~~~ 80 (610)
.-|+|||||++|.-+|..|.++ .+.+|.|.|+-+.+.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 3699999999999999998773 789999999998764
No 320
>KOG0399|consensus
Probab=94.01 E-value=0.072 Score=60.28 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=37.1
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
....-.-|.|||||++|+.+|..|-+ .|+.|+|-||.++..+
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRVGG 1822 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCcCc
Confidence 33346789999999999999999999 9999999999998864
No 321
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.61 E-value=0.069 Score=47.72 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=29.4
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
++|||+|..|+..|++|++ +|.+|.++-+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence 6899999999999999999 999999999886
No 322
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.58 E-value=0.066 Score=56.06 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=29.9
Q ss_pred ccEEEECCCchHHHHHHHHhc-CCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~-~~G~~VlvLE~G~~ 78 (610)
.||||||+|++|+.+|..|.+ ++..+|+||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 489999999999999999986 25678999988754
No 323
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.54 E-value=0.22 Score=51.58 Aligned_cols=89 Identities=10% Similarity=-0.027 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCccCCCCCCcceeeeecccccCCeecchhHhhhhcccCCCCcEEecCceEEEEEEcCCCCeEEEEEEE
Q psy754 202 DAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT 281 (610)
Q Consensus 202 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~ 281 (610)
+.+++.++++|++.....+ |.-+ +. .....+...+++ ..+++.||+|+++++|+.| + +++ ..|.+.
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~----grvf-P~---S~~A~sVv~~L~-~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~ 122 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSS----GRVF-PV---EMKAAPLLRAWL-KRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETP 122 (376)
T ss_pred HHHHHHHHHCCCceEECCC----CEEC-CC---CCCHHHHHHHHH-HHHHHCCCEEEeCCEEEEE--e--CCc-EEEEEC
Confidence 4566777889987632222 1111 11 122334444444 5678899999999999999 3 232 445543
Q ss_pred EcCeEEEEEecceEEeccCCcCchhH
Q psy754 282 IKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 282 ~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
.++ ..++|+ .||||+|+...|++
T Consensus 123 ~~~--~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 123 DGQ--STIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred CCc--eEEecC-EEEEcCCCcccccc
Confidence 222 258894 79999999877765
No 324
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.36 E-value=0.069 Score=48.11 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=27.2
Q ss_pred EEECCCchHHHHHHHHhcC----CCCcEEEEcCCCC
Q psy754 47 IIVGAGPGGCTVANRLSEI----PHWKILLLEAGHY 78 (610)
Q Consensus 47 IIVGsG~~G~~~A~~La~~----~G~~VlvLE~G~~ 78 (610)
+|||+|++|++++.+|.+. ...+|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 4999999999999999873 2679999999644
No 325
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.17 E-value=0.08 Score=55.93 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=33.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.-+++|||+|..|+.+|..|++ .|++|+|+|+.+...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH-cCCeEEEEEcccccc
Confidence 3689999999999999999999 999999999998754
No 326
>KOG0404|consensus
Probab=92.85 E-value=0.098 Score=48.56 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=31.4
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
+...-.|+|||||+++-++|.++++ +.+|-+|.|-.
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaar-aelkPllfEG~ 40 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAAR-AELKPLLFEGM 40 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhh-cccCceEEeee
Confidence 3345679999999999999999998 99999999954
No 327
>KOG2755|consensus
Probab=92.76 E-value=0.083 Score=50.32 Aligned_cols=33 Identities=39% Similarity=0.798 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHHHHhcC-CCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~-~G~~VlvLE~G~~ 78 (610)
+||||+|++|.++|..||.. +...|++|-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 79999999999999999952 7789999976654
No 328
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.48 E-value=0.79 Score=54.25 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=28.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
.++|||+|..|+-+|..|++ .|. .|+|+|..+
T Consensus 319 ~VvViG~G~~g~e~A~~L~~-~G~~vV~vv~~~~ 351 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLA-AGIAVVAIIDARA 351 (985)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCceEEEEccCc
Confidence 68999999999999999998 895 688998653
No 329
>KOG3851|consensus
Probab=92.47 E-value=0.12 Score=50.61 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=33.2
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCC-CcEEEEcCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 78 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G-~~VlvLE~G~~ 78 (610)
...+++.|+|||+|.+|+.+|.++.++-| -+|.+||-.+.
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 34468999999999999999999997644 38999997654
No 330
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.44 E-value=0.13 Score=49.47 Aligned_cols=33 Identities=36% Similarity=0.565 Sum_probs=30.8
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.+||||+|-.|..+|..|++ .|..|+++|+-+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHH
Confidence 48999999999999999999 9999999998864
No 331
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.21 E-value=0.14 Score=54.01 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|+|+++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQ-RRCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 59999999999999999998 89999999998754
No 332
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.15 E-value=0.14 Score=46.14 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=29.0
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|.|||+|..|.++|..|++ .|++|.|..+.+
T Consensus 2 I~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence 7899999999999999999 999999998764
No 333
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.81 E-value=0.17 Score=46.97 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.0
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|.|||.|..|+++|..||+ .|++|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHH-TTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHh-CCCEEEEEeCChH
Confidence 7899999999999999999 9999999997653
No 334
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=91.68 E-value=0.16 Score=54.86 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|.+|+-+|..|++ .|.+|+|+|+++.+
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~i 215 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLAD-FGVEVTVVEAADRI 215 (472)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence 69999999999999999998 89999999998753
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.54 E-value=0.19 Score=46.44 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=27.1
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|.|||+|..|...|..++. .|++|.|+|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECCh
Confidence 7899999999999999999 899999999864
No 336
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.49 E-value=0.19 Score=50.82 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|+..|.+|++ +|.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLAR-AGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence 59999999999999999999 999999999974
No 337
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.39 E-value=0.19 Score=53.77 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|.+|+-+|..|++ .|.+|+|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 59999999999999999998 99999999998654
No 338
>KOG1336|consensus
Probab=91.27 E-value=0.97 Score=47.18 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=45.5
Q ss_pred ccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHHHH
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML 310 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL~~ 310 (610)
..++.|++++.++.+.++..+++ |+++.|.+.++. ++.|+ .||+..|+--...++..
T Consensus 264 y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~---~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 264 YYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGK---TLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHHhcCeEEEEecceeecccCCC-CcEEEEEeccCC---EeccC-eEEEeeccccccccccc
Confidence 34678999999999999988763 899999987644 78995 89999997655555554
No 339
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.92 E-value=0.27 Score=51.43 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHhcC--CCCcEEEEcCCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEI--PHWKILLLEAGHYFN 80 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~--~G~~VlvLE~G~~~~ 80 (610)
++|+|||+|++|+.+|.+|.+. .-.+|.|+|+-+..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 7899999999999999999863 222399999887654
No 340
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.79 E-value=0.24 Score=53.50 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|||+++.+
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~i 209 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQV 209 (471)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 69999999999999999998 99999999998754
No 341
>PRK07846 mycothione reductase; Reviewed
Probab=90.75 E-value=0.24 Score=53.14 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|+|+++..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~l 201 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSGRL 201 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence 69999999999999999998 99999999998653
No 342
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=90.59 E-value=0.25 Score=52.99 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|||+++.+
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~i 201 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHG-LGSETHLVIRHERV 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence 69999999999999999998 99999999998753
No 343
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.44 E-value=0.32 Score=51.71 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.7
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
.++|||+|..|+-.|.-+++ -|.+|+|||+++.+-
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~iL 209 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDRIL 209 (454)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCCC
Confidence 39999999999999999999 999999999998764
No 344
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.39 E-value=0.21 Score=51.85 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=31.3
Q ss_pred cccEEEECCCchHHHHHHHHhcC------------CCCcEEEEcCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEI------------PHWKILLLEAGHYFN 80 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~------------~G~~VlvLE~G~~~~ 80 (610)
.-+++|||||+.|.=+|.+|++. ...+|.|+|+++.+-
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL 204 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence 46799999999999999999751 124999999998764
No 345
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=90.38 E-value=0.44 Score=51.87 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=34.5
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
-||||||||++|+++|..|++ +|++|+|||+.+.+++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK-RGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCCCC
Confidence 489999999999999999999 9999999999988753
No 346
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=90.20 E-value=0.19 Score=53.14 Aligned_cols=46 Identities=17% Similarity=0.072 Sum_probs=31.7
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCc
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF 302 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~ 302 (610)
+...|.+|+++++|++|..+ +++++ |.+.+ |+ ++.|+ .||+|+...
T Consensus 219 ~~~~g~~i~l~~~V~~I~~~--~~~v~-v~~~~-g~--~~~ad-~VI~a~p~~ 264 (450)
T PF01593_consen 219 AEELGGEIRLNTPVTRIERE--DGGVT-VTTED-GE--TIEAD-AVISAVPPS 264 (450)
T ss_dssp HHHHGGGEESSEEEEEEEEE--SSEEE-EEETT-SS--EEEES-EEEE-S-HH
T ss_pred HhhcCceeecCCcceecccc--ccccc-ccccc-ce--EEecc-eeeecCchh
Confidence 34457799999999999999 55654 43333 33 78995 799998853
No 347
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.19 E-value=0.3 Score=46.40 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=42.7
Q ss_pred ecchhhHHHHHHhhccccccccccccCCCcccCCcccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 9 NVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
++|+++....+.+.. +.+.... ..-|+|||+|..|+.+|..|++ .|. ++.++|...
T Consensus 6 ~~~~~~~~~~~~~g~--~~q~~L~----------~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 62 (212)
T PRK08644 6 SMEEFEAMLASRHTP--KLLEKLK----------KAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFDV 62 (212)
T ss_pred cHHHHHHHHHhhcCH--HHHHHHh----------CCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 567788888777643 2222222 4679999999999999999999 898 599999764
No 348
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.10 E-value=0.29 Score=49.76 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|+..|..|++ +|++|.++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence 59999999999999999999 999999999874
No 349
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.06 E-value=0.33 Score=45.62 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.4
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.-.|+|||+|.++.-+|..|++ .|.+|.++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~-~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAK-AGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTT-TCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHh-hCCEEEEEecCC
Confidence 3679999999999999999999 899999998775
No 350
>PRK04148 hypothetical protein; Provisional
Probab=90.06 E-value=0.39 Score=41.52 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.+++||.| .|..+|..|++ .|.+|+.+|..+.
T Consensus 19 kileIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKE-SGFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence 49999999 88888999998 8999999998765
No 351
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.01 E-value=0.31 Score=52.62 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|+|+++.+
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~i 209 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLDRI 209 (466)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence 59999999999999999998 99999999998654
No 352
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.76 E-value=0.33 Score=51.73 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.|+|||+|..|+-+|..|++ .|.+|+++++++..
T Consensus 139 ~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSERI 172 (427)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCccc
Confidence 69999999999999999998 89999999988653
No 353
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=89.68 E-value=0.39 Score=55.52 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHhcC---CCCcEEEEcCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGHYFN 80 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~---~G~~VlvLE~G~~~~ 80 (610)
.|||||+|++|+.+|.+|.+. .+++|+|+++.+...
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 699999999999999999652 468999999988753
No 354
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.67 E-value=0.33 Score=51.94 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|.|+|+++..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYE-RGLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEeccccc
Confidence 69999999999999999998 99999999998653
No 355
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.41 E-value=0.32 Score=49.32 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|...|..|++ .|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence 58999999999999999999 899999999875
No 356
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.37 E-value=0.34 Score=52.51 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|+|||+|.+|+.+|..|++ .|++|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLE-LGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 59999999999999999998 999999999765
No 357
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.26 E-value=0.32 Score=56.04 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=29.7
Q ss_pred EEEECCCchHHHHHHHHhcC--CCCcEEEEcCCCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEI--PHWKILLLEAGHYFN 80 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~--~G~~VlvLE~G~~~~ 80 (610)
|||||+|++|+.+|.+|.+. .+++|+|+|+.+...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 68999999999999988652 467999999988753
No 358
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.23 E-value=0.36 Score=52.02 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=29.8
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|.|||.|.+|+++|+.|++ .|++|++.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKA-QGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHH-CCCEEEEECCCCc
Confidence 8999999999999999998 9999999998754
No 359
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=89.14 E-value=0.38 Score=51.84 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|+|+++.+
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 210 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAA-LGVKVTLINTRDRL 210 (461)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence 59999999999999999999 99999999998754
No 360
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.91 E-value=0.38 Score=48.58 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
|.|||+|..|+..|..|++ .|.+|.++.++
T Consensus 3 I~IiG~G~iG~~~a~~L~~-~g~~V~~~~r~ 32 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLE-AGRDVTFLVRP 32 (305)
T ss_pred EEEECCCHHHHHHHHHHHH-CCCceEEEecH
Confidence 8999999999999999999 89999999983
No 361
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=88.85 E-value=0.66 Score=50.14 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=33.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 81 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~~ 81 (610)
+|+|||+|++|+++|++|++ .|++|+|+|+.+...+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD-AGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCCCCc
Confidence 48999999999999999999 9999999999887653
No 362
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=88.79 E-value=0.43 Score=51.28 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|+|+++.+
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~l 204 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRSTKL 204 (452)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence 69999999999999999998 99999999988653
No 363
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=88.76 E-value=0.43 Score=51.43 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|.|+|+++..
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 204 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSR-LGVKVTVFERGDRI 204 (460)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Confidence 69999999999999999998 99999999998753
No 364
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.52 E-value=0.43 Score=48.19 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
+.|||+|..|...|..|++ .|.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQ-AGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence 8999999999999999998 89999999984
No 365
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.26 E-value=0.42 Score=39.53 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.-.|+|||+|..|..-+..|.+ .|.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence 3569999999999999999999 99999999755
No 366
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.01 E-value=0.49 Score=50.71 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|.|+|+++.+
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRG-LGVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCCCC
Confidence 59999999999999999998 99999999998653
No 367
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=87.78 E-value=0.53 Score=52.71 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|+|||+++.+
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~-~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTA-LGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHh-CCCeEEEEeccCcc
Confidence 69999999999999999998 89999999998764
No 368
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.45 E-value=0.62 Score=43.79 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=30.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
...|+|||+|..|+.+|..|++ .|. +|.|+|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence 4669999999999999999999 998 699999763
No 369
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.17 E-value=0.67 Score=43.63 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=28.5
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 75 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~ 75 (610)
--++|||+|-.|...|..|.+ .|.+|+|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLK-YGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEcC
Confidence 359999999999999999998 8999999975
No 370
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.13 E-value=0.68 Score=41.62 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=27.6
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEc
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLE 74 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE 74 (610)
--|+|||+|-.|..-|..|.+ .|.+|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKD-TGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 349999999999999999998 999999994
No 371
>PTZ00058 glutathione reductase; Provisional
Probab=87.13 E-value=0.58 Score=51.48 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|.|+|+++.+
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~-~G~~Vtli~~~~~i 272 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNR-LGAESYIFARGNRL 272 (561)
T ss_pred EEEEECCcHHHHHHHHHHHH-cCCcEEEEEecccc
Confidence 59999999999999999998 99999999998653
No 372
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.04 E-value=0.54 Score=47.09 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=29.6
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|.|||+|..|...|..|++ .|++|+++|+.+.
T Consensus 4 V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~ 35 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQE 35 (288)
T ss_pred EEEECccHHHHHHHHHHHh-CCCcEEEEeCCHH
Confidence 8999999999999999998 8999999998743
No 373
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.99 E-value=0.65 Score=45.58 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=30.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCC-CcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G-~~VlvLE~G~~ 78 (610)
..-|+|||.|..|+.+|..||+ .| .+++|+|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar-~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALAR-TGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCEe
Confidence 4679999999999999999999 99 58999996643
No 374
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.94 E-value=0.61 Score=50.08 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
-.|+|||+|..|+.+|..|++ .|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 348999999999999999999 999999999864
No 375
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.86 E-value=0.6 Score=46.76 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
-|.|||+|..|...|..|++ +|.+|.++|+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 48999999999999999998 899999999764
No 376
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.79 E-value=0.71 Score=38.92 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|||||.|..|..+|..|.+ .+.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence 7999999999999999999 8889999998753
No 377
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.78 E-value=0.62 Score=47.17 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
-|.|||+|..|...|..++. +|++|++.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALA-HGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 38899999999999999998 999999999764
No 378
>PLN02507 glutathione reductase
Probab=86.77 E-value=0.63 Score=50.64 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.++|||+|..|+-+|..|++ .|.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRG-MGATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEecCC
Confidence 69999999999999999998 9999999998864
No 379
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.64 E-value=0.64 Score=51.34 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-.++|||+|..|+-+|..|++ .|.+|+|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTR-YASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCCc
Confidence 369999999999999999998 8999999999865
No 380
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.51 E-value=0.99 Score=46.21 Aligned_cols=40 Identities=33% Similarity=0.363 Sum_probs=34.5
Q ss_pred cCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 40 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 40 ~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
|.+.+|+|.||-|+.-+++|..|.+..+.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 4457999999999999999999998556899999988653
No 381
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.35 E-value=0.74 Score=49.30 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|.|+|+++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFAN-FGSKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 69999999999999999998 99999999998653
No 382
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.32 E-value=0.8 Score=40.02 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.3
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCc-EEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~-VlvLE~G 76 (610)
.--++|||+|-+|-.+++.|++ .|.+ |.|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECC
Confidence 3569999999999999999999 7886 9999875
No 383
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.27 E-value=0.79 Score=43.26 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
-|+|||+|..|...|..|.+ .|.+|+|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLK-AGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 59999999999999999998 99999999753
No 384
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.15 E-value=0.7 Score=47.55 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|...|..|++ +|++|.++++.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAA-AGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence 48999999999999999999 899999999853
No 385
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.08 E-value=0.66 Score=46.38 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-|.|||+|.-|...|..|+. +|++|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence 48899999999999999998 9999999998754
No 386
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.98 E-value=0.75 Score=47.09 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=31.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||+|..|+.+|..|++ .|. ++.|+|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcc
Confidence 3569999999999999999999 998 8999998753
No 387
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=85.91 E-value=1.1 Score=48.29 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=38.0
Q ss_pred ccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEc-C-eEEEEEecceEEeccCC
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-G-IDHKILARKEVILSAGA 301 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~-g-~~~~i~a~~~VVlAaG~ 301 (610)
.+++.|++|++++.|++|..++ +++++||++.++ + ...++.+ +.||+|+..
T Consensus 222 ~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a-~~VI~a~p~ 274 (453)
T TIGR02731 222 YITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTA-DAYVSAMPV 274 (453)
T ss_pred HHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEEC-CEEEEcCCH
Confidence 3456799999999999998753 467989998643 2 2225788 579999875
No 388
>PLN02546 glutathione reductase
Probab=85.88 E-value=0.74 Score=50.64 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
.++|||+|..|+-+|..|++ .|.+|.|+|+++.+
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~~i 287 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNG-LKSDVHVFIRQKKV 287 (558)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCeEEEEEecccc
Confidence 69999999999999999998 89999999988653
No 389
>PLN02487 zeta-carotene desaturase
Probab=85.86 E-value=1.1 Score=49.39 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=34.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 80 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~~ 80 (610)
..+|+|||+|++|+++|++|++ .|++|+|+|+.+...
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh-CCCeeEEEecCCCCC
Confidence 3589999999999999999999 999999999988765
No 390
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.71 E-value=0.84 Score=46.74 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||+|..|+.+|..|++ .|. +|.++|....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCcc
Confidence 4679999999999999999999 998 8999998643
No 391
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.60 E-value=0.9 Score=40.07 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.1
Q ss_pred EEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
|+|||+|..|+.+|..|++ .|. ++.++|....
T Consensus 2 VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLAR-SGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCc
Confidence 7999999999999999999 998 7999997754
No 392
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.47 E-value=0.84 Score=47.14 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHHHhcCCC-CcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G-~~VlvLE~G~ 77 (610)
+++|||+|-.|.++|..||+ .| .+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~-~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQ-NGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHh-CCCceEEEEeCCH
Confidence 59999999999999999998 67 8999999884
No 393
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.31 E-value=0.77 Score=40.06 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
.-|+|||+|..|+.+|..|++ .|. ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~-~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLAR-SGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHH-HTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHH-hCCCceeecCCcce
Confidence 459999999999999999999 898 7999997754
No 394
>PRK08223 hypothetical protein; Validated
Probab=85.23 E-value=0.83 Score=45.19 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||+|..|+.+|..||. .|. ++.++|-...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~-aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLAR-LGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-hCCCeEEEEeCCCc
Confidence 4679999999999999999999 897 7888886643
No 395
>PRK14694 putative mercuric reductase; Provisional
Probab=84.70 E-value=1 Score=48.67 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.++|||+|..|+-+|..|++ .|.+|+|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~-~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFAR-LGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence 69999999999999999998 999999999753
No 396
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=84.61 E-value=0.89 Score=47.03 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCc-EEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~-VlvLE~G~ 77 (610)
.++|||+|..|+-+|..|++ .|.+ |.|+++.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~-~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVL-LGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCeEEEEeecc
Confidence 59999999999999999998 8987 99999764
No 397
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.53 E-value=1.1 Score=45.91 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
--|.|||+|.-|...|..|++ .|++|.++++.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAAS-KGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 359999999999999999998 999999999853
No 398
>PRK13748 putative mercuric reductase; Provisional
Probab=84.42 E-value=0.92 Score=50.29 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.++|||+|..|+-+|..|++ .|.+|.||++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFAR-LGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEecCc
Confidence 69999999999999999998 999999999853
No 399
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.38 E-value=1.1 Score=41.05 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
|+|||+|..|+.+|..|++ .|. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 7999999999999999999 998 599999764
No 400
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=84.35 E-value=1.2 Score=40.38 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=29.5
Q ss_pred cccEEEECCCc-hHHHHHHHHhcCCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGP-GGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~-~G~~~A~~La~~~G~~VlvLE~G 76 (610)
...++|||+|- +|..+|..|.+ .|.+|.++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~-~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLN-RNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh-CCCEEEEEECC
Confidence 46799999995 79999999998 89999999976
No 401
>KOG3923|consensus
Probab=84.23 E-value=0.91 Score=44.38 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.1
Q ss_pred cccEEEECCCchHHHHHHHHhc------CCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSE------IPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~------~~G~~VlvLE~G 76 (610)
..+++|||+|..|++.|..+.+ .+-.+|.|++--
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4689999999999999966654 144678888643
No 402
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.19 E-value=0.99 Score=45.30 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|...|..|++ +|++|++.|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 48999999999999999998 999999999764
No 403
>PRK07411 hypothetical protein; Validated
Probab=84.04 E-value=0.82 Score=47.89 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=30.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
..-|+|||+|..|+.+|..|+. .|. ++.|+|....
T Consensus 38 ~~~VlivG~GGlG~~va~~La~-~Gvg~l~lvD~D~v 73 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAA-AGIGRIGIVDFDVV 73 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCEe
Confidence 4679999999999999999999 997 7889987643
No 404
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.98 E-value=1 Score=45.15 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=29.1
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|.|||+|..|...|..|+. .|.+|+++|+.+
T Consensus 6 I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 8999999999999999998 999999999764
No 405
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.79 E-value=1 Score=44.88 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|...|..|++ .|++|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH-CCCceEEEeCCH
Confidence 48999999999999999998 899999998664
No 406
>PRK14727 putative mercuric reductase; Provisional
Probab=83.74 E-value=1 Score=48.84 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.++|||+|..|+-+|..|++ .|.+|+|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~-~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYAR-LGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEEcC
Confidence 59999999999999999998 99999999875
No 407
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.51 E-value=0.99 Score=45.54 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=29.2
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+.|+|+|..|+..|++|++ +|..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~-~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAK-AGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHh-CCCeEEEEecHHH
Confidence 7899999999999999999 8988999987764
No 408
>PTZ00052 thioredoxin reductase; Provisional
Probab=83.29 E-value=1.1 Score=48.87 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
.++|||+|..|+-+|..|++ .|.+|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNE-LGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcC
Confidence 69999999999999999998 99999999864
No 409
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.28 E-value=1.1 Score=45.80 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.8
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
+.|||+|..|...|..|++ .|.+|.++.+.+
T Consensus 3 I~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSS-KKISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence 8899999999999999999 899999998753
No 410
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.12 E-value=1.2 Score=45.00 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCC--CcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G--~~VlvLE~G~~ 78 (610)
.|.|||+|..|+++|+.|+. .| ..|+++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-RGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCCEEEEEECCch
Confidence 48999999999999999998 78 58999998653
No 411
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.89 E-value=1.4 Score=41.51 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
-++|+|.|-.|..+|..|.+ .|.+|++.|+.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLE-EGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 49999999999999999999 99999999865
No 412
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.76 E-value=1.2 Score=45.59 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.+.|||+|..|++.|.-||+ .|+.|+.+|.-+
T Consensus 2 kI~viGtGYVGLv~g~~lA~-~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAE-LGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHH-cCCeEEEEeCCH
Confidence 37899999999999999999 999999999764
No 413
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=82.73 E-value=1.3 Score=44.78 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=27.9
Q ss_pred cEEEECCCchHHHHHHHHhcCCCC-cEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G 76 (610)
-|.|||+|..|+.+|+.|+. .|+ +|+++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~-~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAE-KELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 38999999999999999998 776 89999984
No 414
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.48 E-value=1.5 Score=42.62 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
...|+|||+|..|+.+|..|++ .|. ++.++|....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAA-AGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCcc
Confidence 4679999999999999999999 886 7888887654
No 415
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.24 E-value=1.4 Score=42.86 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=30.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+..|+|||+|..|+.+|..|+. .|. ++.|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~-~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAA-AGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCE
Confidence 4779999999999999999999 897 899998664
No 416
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=82.12 E-value=1.4 Score=40.09 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.5
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.-|+|+|+|.+|..||.-|.. .|.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~-lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKG-LGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHH-TT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhH-CCCEEEeccCCH
Confidence 679999999999999999988 999999999764
No 417
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.05 E-value=1.3 Score=45.97 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
..+++|||+|.+|..+|..|.. .|.+|.++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~-lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG-LGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH-CCCeEEEEECC
Confidence 3569999999999999999998 89999999975
No 418
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.90 E-value=2.2 Score=48.57 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-|.|||+|.-|...|..+|. +|++|+|+|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 48999999999999999998 9999999997754
No 419
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.83 E-value=1.7 Score=40.92 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||.|..|+.+|..|++ .|. ++.++|....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCEE
Confidence 4669999999999999999999 897 8999997643
No 420
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=81.71 E-value=1.4 Score=38.49 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=27.1
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
++|+|+|..+..+|.-++. -|++|+|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~-lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL-LGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHH-CTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHh-CCCEEEEEcCCcc
Confidence 5899999999999999998 9999999997644
No 421
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=81.60 E-value=1.5 Score=42.32 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=29.3
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCC-----------CcEEEEcCCC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPH-----------WKILLLEAGH 77 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G-----------~~VlvLE~G~ 77 (610)
....|+|||+|..|+.+|..||+ .| .+++|+|...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar-~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLAR-LHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHH-ccccccccCCCCCCEEEEECCCE
Confidence 35789999999999999999998 53 3888888654
No 422
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.26 E-value=1.7 Score=44.06 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|...|..|++ .|++|+++++.+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFAR-KGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence 48999999999999999998 999999999754
No 423
>PRK08328 hypothetical protein; Provisional
Probab=81.03 E-value=1.7 Score=41.98 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=29.7
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+.-|+|||+|..|+.+|..|+. .|. ++.++|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~-~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAA-AGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 3569999999999999999999 897 788987654
No 424
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.93 E-value=1.7 Score=43.43 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.4
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
-.|+|||+|.+|.++|+.|++ .|. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCH
Confidence 469999999999999999998 887 799998864
No 425
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=80.89 E-value=1.4 Score=46.84 Aligned_cols=35 Identities=37% Similarity=0.711 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcC-------------CCCcEEEEcCCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEI-------------PHWKILLLEAGHYF 79 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~-------------~G~~VlvLE~G~~~ 79 (610)
.++|||+|+.|+-+|..|++. .+.+|.|+|+++.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 799999999999999998741 37899999998654
No 426
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.84 E-value=1.6 Score=45.78 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
-.|+|+|.|..|..+|..|.. .|.+|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCh
Confidence 469999999999999999988 899999999764
No 427
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.69 E-value=1.5 Score=46.35 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.|.|||.|..|+..|..|++ .|++|+++++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHh-cCCeEEEEECCHH
Confidence 38899999999999999999 9999999997653
No 428
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=80.62 E-value=1.5 Score=46.41 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-|.|||.|..|++.|..|++ .|++|.++|+.+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~-~G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFAS-RQKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHh-CCCEEEEEeCCHH
Confidence 38999999999999999999 9999999997643
No 429
>KOG2018|consensus
Probab=80.33 E-value=1.7 Score=42.60 Aligned_cols=32 Identities=38% Similarity=0.504 Sum_probs=27.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAG 76 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G 76 (610)
+| |||||+|-.|+.++.-|++ .|. |+.++|=.
T Consensus 75 sy-VVVVG~GgVGSwv~nmL~R-SG~qKi~iVDfd 107 (430)
T KOG2018|consen 75 SY-VVVVGAGGVGSWVANMLLR-SGVQKIRIVDFD 107 (430)
T ss_pred cE-EEEEecCchhHHHHHHHHH-hcCceEEEechh
Confidence 44 8999999999999999999 887 78888743
No 430
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=79.81 E-value=1.9 Score=41.51 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+.-|+|||+|..|+.+|..|++ .|. +++|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~-~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAA-AGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCE
Confidence 3569999999999999999999 897 788888664
No 431
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=79.60 E-value=1.8 Score=41.54 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=29.7
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCc---EEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWK---ILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~---VlvLE~G~~ 78 (610)
--++|+|+|.+|..+|..|++ .|.+ |.|++|.+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~-~G~~~~~i~ivdr~gl 62 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLA-AGAKPENIVVVDSKGV 62 (226)
T ss_pred CEEEEECchHHHHHHHHHHHH-cCcCcceEEEEeCCCc
Confidence 359999999999999999998 8874 999998754
No 432
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=79.56 E-value=1.7 Score=44.35 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|...|..|++ .|++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 48999999999999999998 899999999864
No 433
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=79.51 E-value=2.1 Score=42.56 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=29.0
Q ss_pred EEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
|+|||+|.-|+.+|..|+. .|. +++++|.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~-aGVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLG-WGVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCeEEEECCCEe
Confidence 7999999999999999999 897 7999997754
No 434
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.38 E-value=1.8 Score=46.40 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=29.0
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
++|+|+|..|.++|..|++ .|.+|++.|+..
T Consensus 8 v~v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHK-LGANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 8999999999999999998 999999999764
No 435
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=79.11 E-value=2.1 Score=43.25 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHHHHhcCCC--CcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G--~~VlvLE~G~~ 78 (610)
|.|||+|..|.++|+.|+. .| .+|.|+++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVN-QGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcc
Confidence 8999999999999999998 78 47999998654
No 436
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.88 E-value=2 Score=42.95 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCc-EEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~-VlvLE~G~ 77 (610)
-++|+|+|-+|.++|+.|++ .|.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~-~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCAL-DGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCc
Confidence 48999999999999999998 8986 99998864
No 437
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=78.79 E-value=1.9 Score=46.24 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=28.4
Q ss_pred cEEEECCCchHHHHHHHHhcCC--CCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~--G~~VlvLE~G~ 77 (610)
.|.|||+|..|+++|..||+ . |++|+.+|..+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCH
Confidence 38999999999999999998 6 58899999764
No 438
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=78.79 E-value=2.1 Score=40.16 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+.-|+|||+|..|+.+|..|+. .|. +++++|...
T Consensus 19 ~s~VlviG~gglGsevak~L~~-~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVL-AGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence 3669999999999999999999 998 599998664
No 439
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.79 E-value=2 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=27.7
Q ss_pred EEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
|+|||+|..|+.++..|+. .|. ++.|+|...
T Consensus 2 VlvvG~GGlG~eilk~La~-~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLAL-MGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 7999999999999999999 887 788888653
No 440
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=78.78 E-value=2.7 Score=33.31 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=28.0
Q ss_pred ccEEEECCCchHHHHHHHHhcCC-CCcEEEEcC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIP-HWKILLLEA 75 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~-G~~VlvLE~ 75 (610)
-.++|+|+|..|..+|..|.+ . +.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~-~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLAD-EGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 459999999999999999998 6 688999988
No 441
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=78.51 E-value=2.2 Score=40.77 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.0
Q ss_pred EEEEC-CCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVG-AGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVG-sG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
+.||| +|..|.++|..|++ .|++|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAK-AGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 78997 79999999999998 899999997764
No 442
>KOG2495|consensus
Probab=78.46 E-value=1.4 Score=45.32 Aligned_cols=43 Identities=30% Similarity=0.522 Sum_probs=33.4
Q ss_pred CcccCCcccEEEECCCchHHHHHHHHhc-------------CCCCcEEEEcCCCCC
Q psy754 37 DQDLLLEYDFIIVGAGPGGCTVANRLSE-------------IPHWKILLLEAGHYF 79 (610)
Q Consensus 37 ~~~~~~~~DvIIVGsG~~G~~~A~~La~-------------~~G~~VlvLE~G~~~ 79 (610)
+++...---+||||+|+.|.-.|.+|+. ..-.+|+++|+.+.+
T Consensus 212 ~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 212 DEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred hHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 3344445789999999999999999974 124699999999753
No 443
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.10 E-value=2.5 Score=42.79 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|.|||+|..|...|..|++ .|++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASA-NGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 49999999999999999998 999999998764
No 444
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.05 E-value=2.6 Score=42.33 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=29.1
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|.|||+|..|...|..|+. .|++|.+.|+.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 8999999999999999998 999999999764
No 445
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.92 E-value=2.3 Score=39.83 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=29.9
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+.-|+|||+|..|+.+|..|+. .|. ++.++|...
T Consensus 21 ~s~VlIiG~gglG~evak~La~-~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVL-SGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence 4669999999999999999999 998 588998664
No 446
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=77.84 E-value=2.4 Score=42.26 Aligned_cols=31 Identities=23% Similarity=0.576 Sum_probs=27.7
Q ss_pred EEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
|+|||+|..|+.+|..|+. .|. ++.|+|-..
T Consensus 2 VlVVGaGGlG~eilknLal-~Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLAL-SGFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCeEEEECCCE
Confidence 7999999999999999999 897 788888653
No 447
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=77.43 E-value=2.4 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||-|-.|+.++..||+ .|. ++.|+|.-..
T Consensus 30 ~~~V~VvGiGGVGSw~veALaR-sGig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALAR-SGIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHH-cCCCeEEEEecccc
Confidence 4569999999999999999999 897 8999997754
No 448
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.41 E-value=2.4 Score=46.57 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=31.2
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||+|.-|+.+|..|+. .|. +++++|.+..
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCEE
Confidence 4679999999999999999999 997 7999998754
No 449
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=77.19 E-value=2.5 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=31.8
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
=+|+|||+|.+|.-+|.+|++ .|.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~-~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAE-VGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHh-cCCeeEEEecCCCc
Confidence 379999999999999999999 89999999888653
No 450
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=77.08 E-value=2.3 Score=45.69 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
=.|+|||+|..|+-+|..|++ .|. +|+|+++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~-~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKR-LGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence 369999999999999999998 887 899999764
No 451
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=76.89 E-value=2.7 Score=40.41 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.1
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+.-|+|||.|..|+.+|..|++ .|. +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar-~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALAR-SGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence 3569999999999999999999 897 899998664
No 452
>PLN02612 phytoene desaturase
Probab=76.87 E-value=3.1 Score=46.06 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCC
Q psy754 251 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA 301 (610)
Q Consensus 251 ~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~ 301 (610)
++.|++|++++.|++|..++ ++++++|.+. +|+ .+.++ .||+|+..
T Consensus 319 ~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~-~G~--~~~ad-~VI~a~p~ 364 (567)
T PLN02612 319 QSLGGEVRLNSRIKKIELND-DGTVKHFLLT-NGS--VVEGD-VYVSATPV 364 (567)
T ss_pred HhcCCEEEeCCeeeEEEECC-CCcEEEEEEC-CCc--EEECC-EEEECCCH
Confidence 45799999999999999864 3667777775 343 57894 79998763
No 453
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=76.80 E-value=2.1 Score=42.64 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=46.7
Q ss_pred ccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhHH
Q psy754 249 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 308 (610)
Q Consensus 249 ~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~LL 308 (610)
..++.|+.++.+-+|.+..+. +++|+.|.++ +.....++|+ .+|||+|.+-|.-|.
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a~-~~VLAsGsffskGLv 322 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRAD-FYVLASGSFFSKGLV 322 (421)
T ss_pred HHHHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCChh-Heeeeccccccccch
Confidence 346789999999999999999 8999999987 5556789994 799999998766553
No 454
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=76.72 E-value=2.5 Score=44.56 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=28.8
Q ss_pred EEEECCCchHHHHHHHHhcCCCC------cEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW------KILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~------~VlvLE~G~~ 78 (610)
|+|||+|..|+-++..||. .|. ++.|+|....
T Consensus 2 VlvVGaGGlGcE~lKnLal-~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFAL-MGVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCcCCCCeEEEECCCCc
Confidence 7999999999999999999 887 8999987643
No 455
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=76.40 E-value=2.4 Score=42.69 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=28.1
Q ss_pred EEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
|.|||+|..|..+|+.|+. .|+ +|+|+|..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~-~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-KELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 5799999999999999997 776 9999998753
No 456
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=76.36 E-value=2.3 Score=45.65 Aligned_cols=32 Identities=6% Similarity=0.236 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|+|||+|.+|+=+|..|++ .+.+|.++.++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~-~a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAK-VAKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHH-hCCeEEEEEeec
Confidence 69999999999999999998 899999998874
No 457
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=76.08 E-value=2.4 Score=42.22 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
|.|||.|..|.+.|..|++ .|.+|+++++.+
T Consensus 3 I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 8899999999999999998 899999998753
No 458
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=75.95 E-value=2.8 Score=41.94 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=29.6
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|-|||+|.-|.-.|..+|. .|+.|++.|..+.
T Consensus 6 v~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~ 37 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPE 37 (307)
T ss_pred EEEEcccchhHHHHHHHhh-cCCceEEEeCCHH
Confidence 8899999999999999998 9999999998743
No 459
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=75.79 E-value=2.9 Score=43.73 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=30.5
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.--|+|||.|..|..+|..|.. .|.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCCh
Confidence 3469999999999999999998 899999999765
No 460
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=75.72 E-value=2.6 Score=37.80 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=27.0
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
--++|+|=|-.|..+|.+|.. .|.+|.|.|..+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~-~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRG-LGARVTVTEIDPI 57 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHH-TT-EEEEE-SSHH
T ss_pred CEEEEeCCCcccHHHHHHHhh-CCCEEEEEECChH
Confidence 459999999999999999998 9999999998753
No 461
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=75.55 E-value=2.6 Score=42.41 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=28.0
Q ss_pred EEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
|+|||+|..|+-+|..|+. .|. ++.|+|...
T Consensus 2 VlIVGaGGlG~EiaKnLal-~Gvg~ItIvD~D~ 33 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVL-TGFGEIHIIDLDT 33 (312)
T ss_pred EEEECCCHHHHHHHHHHHH-hcCCeEEEEcCCC
Confidence 8999999999999999999 897 789988664
No 462
>PRK06153 hypothetical protein; Provisional
Probab=75.51 E-value=3 Score=42.91 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=30.4
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
..-|.|||.|..|+.+|..||+ .|. ++.|+|....
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR-~GVgeI~LVD~D~V 211 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAK-TPVREIHLFDGDDF 211 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHH-cCCCEEEEECCCEe
Confidence 3579999999999999999999 786 8999986643
No 463
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.39 E-value=2.9 Score=41.31 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
..+|+|||+|.+|.-+|.-+.- -|.+|++||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCH
Confidence 4689999999999999998887 899999999773
No 464
>PRK07233 hypothetical protein; Provisional
Probab=75.39 E-value=3.7 Score=43.59 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=38.4
Q ss_pred cccCCCCcEEecCceEEEEEEcCCCCeEEEEEEEEcCeEEEEEecceEEeccCCcCchhH
Q psy754 248 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 307 (610)
Q Consensus 248 ~~~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~~g~~~~i~a~~~VVlAaG~~~sp~L 307 (610)
..+++.|++|++++.|++|..+ +++++++.. +++ +++++ .||+|+.....+.|
T Consensus 206 ~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~~--~~~--~~~ad-~vI~a~p~~~~~~l 258 (434)
T PRK07233 206 EAIEARGGEIRLGTPVTSVVID--GGGVTGVEV--DGE--EEDFD-AVISTAPPPILARL 258 (434)
T ss_pred HHHHhcCceEEeCCCeeEEEEc--CCceEEEEe--CCc--eEECC-EEEECCCHHHHHhh
Confidence 4456678999999999999887 566666652 343 68895 79999986444443
No 465
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.28 E-value=2.8 Score=45.50 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-|-|||+|.-|...|..|++ +|++|+|.|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~-aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAAS-AGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 48999999999999999998 9999999998754
No 466
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=75.28 E-value=3.2 Score=39.48 Aligned_cols=30 Identities=13% Similarity=0.312 Sum_probs=27.4
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEc
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLE 74 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE 74 (610)
--|+|||||..++-=+..|.+ .|.+|+|+=
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~-~gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLK-KGCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 459999999999999999998 999999994
No 467
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=75.18 E-value=2.8 Score=47.70 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=30.4
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-|.|||+|.-|...|..+|. +|++|+++|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 49999999999999999998 9999999997753
No 468
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=74.83 E-value=2.4 Score=42.82 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=38.6
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeE--EEEEEEEcCeEEEEEecceEEeccCCc
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKA--CGVLATIKGIDHKILARKEVILSAGAF 302 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv--~GV~~~~~g~~~~i~a~~~VVlAaG~~ 302 (610)
++.+||++..+.+|+.|.++...|+. ..+.+..+++...+..++.|++.-|.+
T Consensus 237 L~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 237 LKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred HHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence 47899999999999999998765532 223323345566677777888888865
No 469
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=74.67 E-value=2.8 Score=36.03 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=27.6
Q ss_pred CcccEEEECCCchHHHHHHHHhcCCCCcEEEEcC
Q psy754 42 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 75 (610)
Q Consensus 42 ~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~ 75 (610)
....|-|||+|-.|..+|..|.+ .|+.|.-+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~-ag~~v~~v~s 41 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALAR-AGHEVVGVYS 41 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHH-TTSEEEEESS
T ss_pred CccEEEEECCCHHHHHHHHHHHH-CCCeEEEEEe
Confidence 35779999999999999999999 9999987753
No 470
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.63 E-value=2.4 Score=42.43 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=32.4
Q ss_pred ccCCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy754 39 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 79 (610)
Q Consensus 39 ~~~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~~ 79 (610)
++=+--||.|||+|-+|.-+|..||- -=..|+|||=.+..
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAG-iv~hVtllEF~~eL 389 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAG-IVEHVTLLEFAPEL 389 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHh-hhheeeeeecchhh
Confidence 34345699999999999999999986 55689999966543
No 471
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=74.57 E-value=3.6 Score=36.21 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=27.4
Q ss_pred cEEEECC-CchHHHHHHHHhcCCCC--cEEEEcCCC
Q psy754 45 DFIIVGA-GPGGCTVANRLSEIPHW--KILLLEAGH 77 (610)
Q Consensus 45 DvIIVGs-G~~G~~~A~~La~~~G~--~VlvLE~G~ 77 (610)
.|.|||+ |..|.++|+.|.. .+. ++.|+|..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~-~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQ-QGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHh-CCCCCceEEeccCc
Confidence 3899999 9999999999997 454 799999774
No 472
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=74.55 E-value=3 Score=45.59 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
-++|+|+|.+|.++|+.|++ .|.+|+++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~-~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKE-KGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 58999999999999999999 89999999874
No 473
>KOG2304|consensus
Probab=74.54 E-value=3.4 Score=38.72 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCcccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 41 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 41 ~~~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
...-.|-|||+|.-|+-+|--.|. .|+.|.|+++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~-sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAAT-SGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHh-cCCceEEecCCHH
Confidence 334569999999999999999998 9999999998754
No 474
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=74.31 E-value=3.1 Score=41.56 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=30.1
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
-.++|||.|..|..+|..|.. .|.+|.+.+|..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~-~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSA-LGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 469999999999999999998 899999999864
No 475
>PRK06223 malate dehydrogenase; Reviewed
Probab=74.08 E-value=3.3 Score=41.87 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
-|.|||+|..|..+|+.|+. .|. .|.|+|.-+
T Consensus 4 KI~VIGaG~vG~~ia~~la~-~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLAL-KELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEEECCC
Confidence 58999999999999999998 665 999999844
No 476
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=74.06 E-value=3.2 Score=43.52 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=30.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||+|..|+.+|..|+. .|. ++.|+|-...
T Consensus 42 ~~~VlviG~GGlGs~va~~La~-~Gvg~i~lvD~D~v 77 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAA-AGVGTLGIVEFDVV 77 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-cCCCeEEEECCCEe
Confidence 4679999999999999999999 897 7999986643
No 477
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=73.93 E-value=4.4 Score=41.21 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=29.9
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
.-|.|||+|..|..+|+.|+. .|+ +|.|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-KNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEeCCCc
Confidence 459999999999999999998 886 8999998664
No 478
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=73.79 E-value=3.4 Score=40.88 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.++|+|+|..|.++|..|++ .|.+|.++.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~-~g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLK-ADCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 58999999999999999998 899999998763
No 479
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=73.73 E-value=3.3 Score=45.06 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.8
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
|-|||+|.-|...|..|+. +|+.|.|.|+.+.
T Consensus 10 V~VIGaG~MG~gIA~~la~-aG~~V~l~D~~~e 41 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQ-AGHTVLLYDARAG 41 (507)
T ss_pred EEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 8899999999999999998 9999999998754
No 480
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=73.65 E-value=3.6 Score=41.76 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=29.4
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCC--cEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~--~VlvLE~G~~ 78 (610)
.-|.|||+|..|.++|+.|+. .|. .++|+|....
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-~~~~~el~L~D~~~~ 42 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-QGIADELVIIDINKE 42 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCCc
Confidence 469999999999999999998 777 7999998543
No 481
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=73.64 E-value=4 Score=38.08 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.4
Q ss_pred ccEEEECC-CchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 44 YDFIIVGA-GPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 44 ~DvIIVGs-G~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
-.++|+|+ |..|..+|..|++ .|.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAR-EGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 45999996 9999999999998 89999999765
No 482
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=73.59 E-value=3.1 Score=45.16 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.|-|||+|..|...|..|++ +|++|+|.|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~-~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL-AGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 38899999999999999998 999999999864
No 483
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.26 E-value=3.3 Score=42.77 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||+|..|+.+|..|+. .|. ++.|+|....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~-~Gvg~i~lvD~D~v 63 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAG-AGVGHITIIDDDTV 63 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCEE
Confidence 4679999999999999999999 897 7999987643
No 484
>PRK08017 oxidoreductase; Provisional
Probab=73.15 E-value=3.7 Score=39.94 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=28.1
Q ss_pred EEEECC-CchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 46 FIIVGA-GPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 46 vIIVGs-G~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
++|+|+ |..|..+|.+|++ .|.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~-~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKR-RGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 899998 9999999999998 899999997753
No 485
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=73.15 E-value=4.1 Score=39.26 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=29.8
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+.-|+|||.|.-|+.+|..|+. +|. ++.++|-..
T Consensus 26 ~SrVLVVG~GGLGsEVAKnLaL-AGVGsItIvDdD~ 60 (287)
T PTZ00245 26 HTSVALHGVAGAAAEAAKNLVL-AGVRAVAVADEGL 60 (287)
T ss_pred hCeEEEECCCchHHHHHHHHHH-cCCCeEEEecCCc
Confidence 4679999999999999999999 998 688888653
No 486
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=73.00 E-value=7 Score=42.23 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=43.3
Q ss_pred cCCCCcEEecCceEEEEEEcCCCCeEEEEEEEE-----------cCeEEEEEecceEEeccCCcCc-hhHHHHhC
Q psy754 250 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----------KGIDHKILARKEVILSAGAFNS-PKLLMLSG 312 (610)
Q Consensus 250 ~~~~gv~i~~~~~V~~i~~~~~~~rv~GV~~~~-----------~g~~~~i~a~~~VVlAaG~~~s-p~LL~~Sg 312 (610)
+.+.|+++++++.+++|.-+ ++++++|++.. .+...++.++ .||+|.|.... ..|+...|
T Consensus 339 ~~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 339 AHEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HHHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccC
Confidence 45679999999999999755 68999988652 2445689995 89999995433 33554444
No 487
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.97 E-value=3.5 Score=44.27 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
.|+|||+|..|..+|..|.+ .|.+|+++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCHH
Confidence 48999999999999999998 8999999998643
No 488
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.88 E-value=3.9 Score=43.10 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 44 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 44 ~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
--|+|||.|..|..+|..|.. .|.+|++.|..+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCch
Confidence 469999999999999999998 8999999997653
No 489
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=72.80 E-value=3.8 Score=38.31 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=27.3
Q ss_pred EEEECCCchHHHHHHHHhcCCCCcEEEEcCC
Q psy754 46 FIIVGAGPGGCTVANRLSEIPHWKILLLEAG 76 (610)
Q Consensus 46 vIIVGsG~~G~~~A~~La~~~G~~VlvLE~G 76 (610)
+.|+|.|-.|..+|.+|++ +|+.|.+-=+.
T Consensus 4 ~~i~GtGniG~alA~~~a~-ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAK-AGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHh-CCCeEEEecCC
Confidence 7899999999999999999 99999998444
No 490
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.72 E-value=3.7 Score=42.87 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=30.3
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
+.-|+|||+|..|+.+|..|++ .|. ++.++|...
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~-~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAA-AGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 4569999999999999999999 898 799999764
No 491
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.64 E-value=3.8 Score=44.12 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-|.|+|.|.+|.++|..|.+ .|++|.+.|+.+.
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~-~G~~V~~~D~~~~ 48 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVK-LGAKVTAFDKKSE 48 (458)
T ss_pred eEEEEcccHHHHHHHHHHHH-CCCEEEEECCCCC
Confidence 38999999999999999998 9999999998753
No 492
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=72.32 E-value=3.6 Score=46.91 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-|.|||+|.-|...|..+|. +|++|+++|..+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHH
Confidence 49999999999999999998 9999999997754
No 493
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=72.23 E-value=3.6 Score=42.72 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~~ 78 (610)
+.-|+|||+|..|+.+|..|+. .|. ++.++|....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~-~Gvg~i~ivD~D~v 76 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLAS-AGVGTITLIDDDTV 76 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEeCCEE
Confidence 4569999999999999999999 896 8999987643
No 494
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=72.19 E-value=3.5 Score=47.49 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCc-EEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~-VlvLE~G~ 77 (610)
.|||||+|..|+-+|..|.+ .|.+ |+|+++.+
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r-~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKR-LGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence 59999999999999999998 8987 99999774
No 495
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=72.14 E-value=4.1 Score=40.58 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
-++|+|+|.++-++|+.|++ .|. +|.|+.|..
T Consensus 129 ~vlilGaGGaarAi~~aL~~-~g~~~i~i~nR~~ 161 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVT-HGVQKLQVADLDT 161 (283)
T ss_pred eEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCH
Confidence 58999999999999999998 786 789998753
No 496
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=71.71 E-value=3.8 Score=44.26 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=29.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.-.|+|+|+|.+|+.++.-+.. .|.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~-lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS-LGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 4679999999999998888777 899999999764
No 497
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.35 E-value=4.3 Score=43.45 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
-++|+|.|.+|+++|..|++ .|.+|++.|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~-~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRK-NGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 48999999999999999998 9999999997654
No 498
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=71.32 E-value=4.3 Score=40.12 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHHHHhcCCCC-cEEEEcCCC
Q psy754 45 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 77 (610)
Q Consensus 45 DvIIVGsG~~G~~~A~~La~~~G~-~VlvLE~G~ 77 (610)
.++|+|+|.++.++++.|++ .|. +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~-~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRD-AGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCH
Confidence 59999999999999999998 786 599998864
No 499
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.29 E-value=4.1 Score=40.89 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 77 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~ 77 (610)
.-.++|||.|.+|..+|..|.. .|.+|.+.++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA-LGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 3569999999999999999998 899999998774
No 500
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=71.20 E-value=3.6 Score=45.52 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHHHHhcCCCCcEEEEcCCCC
Q psy754 43 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 78 (610)
Q Consensus 43 ~~DvIIVGsG~~G~~~A~~La~~~G~~VlvLE~G~~ 78 (610)
+-.+||+|.|..|-.+|.+|.+ .|.+|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCHH
Confidence 4679999999999999999998 8999999998753
Done!