Query psy7540
Match_columns 578
No_of_seqs 187 out of 220
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 20:59:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3760|consensus 100.0 9E-103 2E-107 806.7 22.7 331 2-334 253-587 (594)
2 KOG3760|consensus 100.0 3.5E-77 7.5E-82 616.8 15.9 254 323-578 170-594 (594)
3 PF06662 C5-epim_C: D-glucuron 100.0 1.5E-66 3.2E-71 504.1 14.9 189 138-331 1-189 (189)
4 PF06662 C5-epim_C: D-glucuron 100.0 1.6E-63 3.6E-68 482.8 16.6 168 397-568 22-189 (189)
5 cd00249 AGE AGE domain; N-acyl 99.0 3.6E-07 7.7E-12 96.2 26.5 351 124-544 13-373 (384)
6 cd00249 AGE AGE domain; N-acyl 98.7 9.6E-07 2.1E-11 93.0 20.0 268 120-450 71-349 (384)
7 PF07221 GlcNAc_2-epim: N-acyl 97.6 0.003 6.6E-08 66.4 18.2 312 165-543 18-345 (346)
8 PF07944 DUF1680: Putative gly 97.4 0.0063 1.4E-07 68.3 17.0 303 115-491 1-322 (520)
9 COG1331 Highly conserved prote 96.5 0.52 1.1E-05 54.5 23.1 150 408-573 414-570 (667)
10 cd04791 LanC_SerThrkinase Lant 96.4 0.035 7.5E-07 57.2 11.6 167 119-327 99-267 (321)
11 COG1331 Highly conserved prote 96.3 0.011 2.4E-07 67.7 8.3 158 170-350 413-584 (667)
12 PF07944 DUF1680: Putative gly 96.1 0.03 6.6E-07 62.9 10.1 121 119-263 77-204 (520)
13 PF07221 GlcNAc_2-epim: N-acyl 95.9 0.038 8.2E-07 58.2 9.6 148 402-571 18-172 (346)
14 TIGR02474 pec_lyase pectate ly 95.6 0.084 1.8E-06 55.5 10.3 109 172-286 48-166 (290)
15 cd04792 LanM-like LanM-like pr 95.5 0.36 7.8E-06 56.9 16.6 286 161-570 486-779 (825)
16 TIGR02474 pec_lyase pectate ly 95.3 0.043 9.3E-07 57.7 7.3 82 120-214 62-160 (290)
17 PF03663 Glyco_hydro_76: Glyco 95.2 0.022 4.8E-07 61.3 4.8 146 106-268 91-256 (370)
18 PF07470 Glyco_hydro_88: Glyco 95.1 0.037 8.1E-07 58.1 5.9 126 163-327 24-150 (336)
19 PF09492 Pec_lyase: Pectic aci 94.9 0.11 2.4E-06 54.6 8.6 141 138-287 1-162 (289)
20 KOG2244|consensus 94.5 0.58 1.3E-05 52.9 13.4 312 169-566 337-671 (786)
21 cd02889 SQCY Squalene cyclase 94.4 0.94 2E-05 47.3 14.5 55 129-204 3-58 (348)
22 cd04794 euk_LANCL eukaryotic L 94.3 3 6.6E-05 44.0 17.9 128 408-573 169-305 (343)
23 PTZ00470 glycoside hydrolase f 93.0 1.1 2.4E-05 50.8 12.7 164 98-275 149-325 (522)
24 PF13243 Prenyltrans_1: Prenyl 92.7 0.014 3.1E-07 50.8 -2.2 63 128-210 2-65 (109)
25 PF03663 Glyco_hydro_76: Glyco 92.6 0.17 3.7E-06 54.6 5.2 154 169-351 89-256 (370)
26 cd04434 LanC_like LanC-like pr 90.0 24 0.00053 35.9 20.3 279 176-572 10-300 (343)
27 PF07470 Glyco_hydro_88: Glyco 90.0 0.94 2E-05 47.7 7.5 81 121-210 211-294 (336)
28 cd04434 LanC_like LanC-like pr 88.5 4.4 9.6E-05 41.4 11.1 175 120-331 117-296 (343)
29 PF09492 Pec_lyase: Pectic aci 88.0 1.1 2.3E-05 47.4 6.2 88 120-214 57-155 (289)
30 COG3533 Uncharacterized protei 87.5 1.4 3.1E-05 49.6 7.0 130 175-328 185-321 (589)
31 cd04793 LanC LanC is the cycla 87.2 3.6 7.8E-05 44.0 9.9 190 120-333 121-325 (382)
32 cd04791 LanC_SerThrkinase Lant 85.0 8 0.00017 39.8 10.8 75 120-203 157-231 (321)
33 KOG2787|consensus 84.0 3 6.4E-05 44.8 7.0 172 70-274 177-370 (403)
34 cd02889 SQCY Squalene cyclase 83.2 11 0.00024 39.3 11.0 81 121-212 42-138 (348)
35 cd04792 LanM-like LanM-like pr 82.4 10 0.00022 44.9 11.5 164 120-329 605-775 (825)
36 cd02892 SQCY_1 Squalene cyclas 82.1 11 0.00023 43.8 11.3 154 122-281 326-495 (634)
37 PF01532 Glyco_hydro_47: Glyco 81.7 4.8 0.0001 44.8 8.0 155 105-275 78-249 (452)
38 COG4225 Predicted unsaturated 80.9 2.2 4.8E-05 46.0 4.8 118 177-321 45-175 (357)
39 PF13243 Prenyltrans_1: Prenyl 76.7 3.9 8.5E-05 35.4 4.4 28 120-148 41-68 (109)
40 cd04793 LanC LanC is the cycla 75.5 15 0.00032 39.3 9.2 145 404-571 169-326 (382)
41 PLN03012 Camelliol C synthase 72.8 1.9E+02 0.004 34.9 17.9 104 121-225 435-548 (759)
42 TIGR03463 osq_cycl 2,3-oxidosq 71.6 18 0.0004 42.1 9.4 132 124-281 399-544 (634)
43 TIGR01787 squalene_cyclas squa 68.6 34 0.00073 39.9 10.6 131 123-281 386-528 (621)
44 KOG2244|consensus 67.7 11 0.00025 43.0 6.2 160 170-335 507-677 (786)
45 PLN02993 lupeol synthase 66.4 1.9E+02 0.0042 34.8 16.3 103 122-225 436-548 (763)
46 TIGR03463 osq_cycl 2,3-oxidosq 64.0 67 0.0014 37.6 11.9 156 121-281 324-496 (634)
47 PLN03012 Camelliol C synthase 61.1 47 0.001 39.8 10.0 113 124-250 638-756 (759)
48 TIGR01507 hopene_cyclase squal 60.7 66 0.0014 37.7 11.1 145 124-281 335-490 (635)
49 cd04794 euk_LANCL eukaryotic L 59.8 30 0.00065 36.6 7.6 123 119-268 182-305 (343)
50 PTZ00470 glycoside hydrolase f 59.7 46 0.001 38.1 9.3 57 123-199 126-185 (522)
51 COG4403 LcnDR2 Lantibiotic mod 57.0 26 0.00057 42.3 6.9 122 172-331 650-772 (963)
52 PF15425 DUF4627: Domain of un 53.5 22 0.00048 35.5 4.8 62 14-75 89-156 (212)
53 PF00759 Glyco_hydro_9: Glycos 52.7 22 0.00048 38.8 5.3 122 121-254 94-235 (444)
54 PF13249 Prenyltrans_2: Prenyl 52.4 11 0.00024 32.5 2.3 17 130-147 47-63 (113)
55 COG4403 LcnDR2 Lantibiotic mod 50.9 1.1E+02 0.0024 37.3 10.6 135 403-574 643-778 (963)
56 cd02892 SQCY_1 Squalene cyclas 47.7 76 0.0016 37.0 8.8 127 122-282 473-603 (634)
57 PLN02993 lupeol synthase 46.5 96 0.0021 37.3 9.4 111 124-248 638-754 (763)
58 TIGR01787 squalene_cyclas squa 46.1 50 0.0011 38.5 7.0 105 125-246 509-619 (621)
59 PF05426 Alginate_lyase: Algin 45.8 20 0.00043 36.4 3.3 34 169-203 57-90 (272)
60 COG3533 Uncharacterized protei 44.8 41 0.00089 38.4 5.8 130 412-565 185-321 (589)
61 TIGR01507 hopene_cyclase squal 44.7 90 0.0019 36.6 8.8 130 122-282 400-539 (635)
62 cd00688 ISOPREN_C2_like This g 44.0 37 0.0008 33.1 4.9 78 122-210 101-179 (300)
63 KOG2429|consensus 42.1 61 0.0013 37.4 6.6 165 260-478 152-319 (622)
64 PF05592 Bac_rhamnosid: Bacter 38.1 1.8E+02 0.004 32.4 9.7 145 124-281 168-324 (509)
65 PF00432 Prenyltrans: Prenyltr 37.6 53 0.0012 24.5 3.8 21 127-148 3-23 (44)
66 PF05147 LANC_like: Lanthionin 37.3 53 0.0012 34.0 5.0 76 120-202 186-261 (355)
67 PF01532 Glyco_hydro_47: Glyco 34.9 51 0.0011 36.7 4.7 90 473-572 82-178 (452)
68 PF13249 Prenyltrans_2: Prenyl 34.8 25 0.00055 30.2 1.8 23 124-147 91-113 (113)
69 PF05147 LANC_like: Lanthionin 34.2 44 0.00095 34.6 3.8 177 119-333 123-306 (355)
70 cd02896 complement_C3_C4_C5 Pr 34.2 84 0.0018 32.8 5.9 73 125-203 103-181 (297)
71 cd00688 ISOPREN_C2_like This g 34.0 3.8E+02 0.0082 26.0 10.2 76 121-211 48-124 (300)
72 TIGR02383 Hfq RNA chaperone Hf 28.6 1.7E+02 0.0036 24.4 5.4 37 4-47 18-57 (61)
73 cd01716 Hfq Hfq, an abundant, 28.4 1.5E+02 0.0032 24.6 5.2 37 4-47 14-53 (61)
74 cd02891 A2M_like Proteins simi 26.9 3E+02 0.0065 27.7 8.3 64 121-196 45-108 (282)
75 PF05426 Alginate_lyase: Algin 26.3 57 0.0012 33.0 3.0 32 407-439 58-89 (272)
76 COG4225 Predicted unsaturated 25.7 2.4E+02 0.0052 31.0 7.5 100 121-228 228-334 (357)
77 TIGR01577 oligosac_amyl oligos 23.0 7.9E+02 0.017 28.5 11.7 136 124-274 313-454 (616)
78 PLN03009 cellulase 21.7 2.2E+02 0.0049 32.5 6.8 121 121-255 113-258 (495)
79 COG1923 Hfq Uncharacterized ho 21.3 2.1E+02 0.0045 24.9 4.9 37 4-47 22-61 (77)
80 KOG2431|consensus 20.7 1.9E+02 0.0042 32.6 5.7 102 99-204 170-276 (546)
No 1
>KOG3760|consensus
Probab=100.00 E-value=8.9e-103 Score=806.69 Aligned_cols=331 Identities=47% Similarity=0.788 Sum_probs=319.4
Q ss_pred Cc-eEEEcCCccceEEEEEEEEecCc-cEEEEEEecccCceEEEEEEeccceEEeeCCceEEecc--CCCCcchhhHHHH
Q psy7540 2 QT-VSLKLNHGSDFILGVTLSILSNS-SLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIG--CSSTWQTLTRDLL 77 (578)
Q Consensus 2 ~~-~~~~l~~~~d~~~s~~~~~~~~~-s~~v~~~~~~~~~~~~~hy~~~~~~i~~~~~~~~~g~g--~~~~w~~~trdl~ 77 (578)
+| +|+.|++++|||||||||+..|+ ||||+++++|+.+.|.||||.++++|.+++++|||||| |.++|++|||||+
T Consensus 253 eg~~sv~L~~t~DlviSfDlk~~tn~sS~~v~~~~~~~~~l~~ihYv~~d~lv~~~~~diYygiG~sp~~~WstvTRDL~ 332 (594)
T KOG3760|consen 253 EGAASVYLDKTPDLVISFDLKPYTNNSSFTVLAKMKQDDLLVLIHYVYSDYLVQKPKKDIYYGIGNSPIGEWSTVTRDLL 332 (594)
T ss_pred cccEEEEcCCCCceEEEEeeEEeeCCceEEEEEeecccceEEEEEecchhhhhccccccceeecCCCCcccceehhHHHH
Confidence 45 99999999999999999997766 89999999999999999999999999999999999999 7899999999999
Q ss_pred HHhhhhhhhhhhhhhhhcccCCceEEEEeeeccccccccccCchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCC
Q psy7540 78 IDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGI 157 (578)
Q Consensus 78 ~d~~k~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~n~~l~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~ 157 (578)
|||+|||+..++|+.|..+..++++|+|.|+|.|++|||+++++.|+++|++|||||++||| +.|||+++|+|++++++
T Consensus 333 vDl~kg~~gdnrk~~k~~~~~~l~vvslgf~G~gf~dnIT~st~~H~aaFyaAadWlV~NQd-~kGGW~~pV~Rsl~egf 411 (594)
T KOG3760|consen 333 VDLAKGLSGDNRKKDKNVVLHALRVVSLGFRGEGFVDNITQSTEQHSAAFYAAADWLVKNQD-DKGGWSVPVERSLAEGF 411 (594)
T ss_pred HHHHHhhcCCCcCCCcceeecceeeeeeeeccccchhheeehhhHHHHHHHHHHHHHhhCCC-CCCCCcchhhhhhhcCc
Confidence 99999998666666666777779999999999999999999999999999999999999999 88999999999999999
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHH
Q psy7540 158 GDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFI 237 (578)
Q Consensus 158 ~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfi 237 (578)
..|+|||+||||||||||||+|||.++ +|++||++|.+|+++|++.+++|||+++||+++.|||||||+|++|||||||
T Consensus 412 ~~L~PGW~SAMaQGhaISvL~RAy~h~-~De~yL~sAa~al~pyk~~S~dgGV~a~Fm~K~~WYEEYPTTP~SfVLNGF~ 490 (594)
T KOG3760|consen 412 LVLPPGWHSAMAQGHAISVLTRAYKHF-NDEKYLKSAAKALKPYKINSSDGGVRAEFMGKNIWYEEYPTTPGSFVLNGFL 490 (594)
T ss_pred cccCcchHhhhhcccchHHHHHHHHhc-CcHHHHHHHHhhcCCeEeecCCCceEEEEccccchhhhcCCCCcceeehhHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhc
Q psy7540 238 YSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIE 317 (578)
Q Consensus 238 ysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it 317 (578)
||||||||+.+..+.+..+||.+||.+||.|||+|||+||||+++.|||||+++|.+||+||||||++||+||++|+.|+
T Consensus 491 YSLiGLYDL~eTa~~Kia~EA~~Ly~~Gm~SLK~mLpLyDTGSGTiYDLRH~~LG~APNLARWDYHatHvnqL~llatId 570 (594)
T KOG3760|consen 491 YSLIGLYDLDETARAKIAQEAQELYSAGMRSLKQMLPLYDTGSGTIYDLRHVALGTAPNLARWDYHATHVNQLKLLATID 570 (594)
T ss_pred HHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhheeeecCCCceeehhhhhhccCcccccchhhhHHHHHHHHHhhcc
Confidence 99999999999888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCcccccccC
Q psy7540 318 KDKIISDTGVPVTTQWD 334 (578)
Q Consensus 318 ~D~~f~~~A~rW~~q~~ 334 (578)
+||+|+++|+||..+.-
T Consensus 571 ~dpv~~~ta~RWkgY~~ 587 (594)
T KOG3760|consen 571 KDPVLSKTADRWKGYAY 587 (594)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 99999999999988643
No 2
>KOG3760|consensus
Probab=100.00 E-value=3.5e-77 Score=616.79 Aligned_cols=254 Identities=57% Similarity=0.971 Sum_probs=233.4
Q ss_pred cccCcccccccCCCcccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccc--
Q psy7540 323 SDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNF-- 400 (578)
Q Consensus 323 ~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~-- 400 (578)
..+++|.++||++++||+|+|||||||+|||||++|++||++|+||++.++.+|-.+. ||++.+..+..++..|.++
T Consensus 170 a~egVP~STQW~p~gYfYPiQIaQygLsHYSkNltE~~P~~~V~edgd~nkmeW~~pk-gsnM~~~~~~~fft~Vvqf~a 248 (594)
T KOG3760|consen 170 AKEGVPMSTQWDPIGYFYPIQIAQYGLSHYSKNLTEASPKDDVIEDGDNNKMEWKGPK-GSNMHETTERLFFTDVVQFSA 248 (594)
T ss_pred ccCCCccccccccccceeehHHHHhHHHhhcccccCCCCcceeeecCCCCccccccCC-cccHHHHHHHhhhccceeeec
Confidence 4678899999999999999999999999999999999999999999999999999984 6554322222111111111
Q ss_pred ---------------------------------------------------------------------------c----
Q psy7540 401 ---------------------------------------------------------------------------H---- 401 (578)
Q Consensus 401 ---------------------------------------------------------------------------w---- 401 (578)
|
T Consensus 249 ~~~~eg~~sv~L~~t~DlviSfDlk~~tn~sS~~v~~~~~~~~~l~~ihYv~~d~lv~~~~~diYygiG~sp~~~WstvT 328 (594)
T KOG3760|consen 249 GAALEGAASVYLDKTPDLVISFDLKPYTNNSSFTVLAKMKQDDLLVLIHYVYSDYLVQKPKKDIYYGIGNSPIGEWSTVT 328 (594)
T ss_pred cccccccEEEEcCCCCceEEEEeeEEeeCCceEEEEEeecccceEEEEEecchhhhhccccccceeecCCCCcccceehh
Confidence 1
Q ss_pred --------------------------------------------------------------------------------
Q psy7540 402 -------------------------------------------------------------------------------- 401 (578)
Q Consensus 402 -------------------------------------------------------------------------------- 401 (578)
T Consensus 329 RDL~vDl~kg~~gdnrk~~k~~~~~~l~vvslgf~G~gf~dnIT~st~~H~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~ 408 (594)
T KOG3760|consen 329 RDLLVDLAKGLSGDNRKKDKNVVLHALRVVSLGFRGEGFVDNITQSTEQHSAAFYAAADWLVKNQDDKGGWSVPVERSLA 408 (594)
T ss_pred HHHHHHHHHhhcCCCcCCCcceeecceeeeeeeeccccchhheeehhhHHHHHHHHHHHHHhhCCCCCCCCcchhhhhhh
Confidence
Q ss_pred ----------ccccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCceeeccCCCceEeeCCCCCCceeeh
Q psy7540 402 ----------TSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILN 471 (578)
Q Consensus 402 ----------~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLN 471 (578)
+||||||||||||+|||.++ +|++||++|.+|++||++.+++|||++.||++++|||||||+|+|||||
T Consensus 409 egf~~L~PGW~SAMaQGhaISvL~RAy~h~-~De~yL~sAa~al~pyk~~S~dgGV~a~Fm~K~~WYEEYPTTP~SfVLN 487 (594)
T KOG3760|consen 409 EGFLVLPPGWHSAMAQGHAISVLTRAYKHF-NDEKYLKSAAKALKPYKINSSDGGVRAEFMGKNIWYEEYPTTPGSFVLN 487 (594)
T ss_pred cCccccCcchHhhhhcccchHHHHHHHHhc-CcHHHHHHHHhhcCCeEeecCCCceEEEEccccchhhhcCCCCcceeeh
Confidence 19999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCCCCCCCCChHHHHHHHHHHHH
Q psy7540 472 GFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLA 551 (578)
Q Consensus 472 GfIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~qL~~L~ 551 (578)
|||||||||||+.+.++..+.+||.+||.+||.|||+|||+||||++|.|||||+++|++||+||||||++||+||++|+
T Consensus 488 GF~YSLiGLYDL~eTa~~Kia~EA~~Ly~~Gm~SLK~mLpLyDTGSGTiYDLRH~~LG~APNLARWDYHatHvnqL~lla 567 (594)
T KOG3760|consen 488 GFLYSLIGLYDLDETARAKIAQEAQELYSAGMRSLKQMLPLYDTGSGTIYDLRHVALGTAPNLARWDYHATHVNQLKLLA 567 (594)
T ss_pred hHHHHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhheeeecCCCceeehhhhhhccCcccccchhhhHHHHHHHHHh
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhhhccccCCC
Q psy7540 552 TIEKDKIISDTGQRWAGYIQGKRASHN 578 (578)
Q Consensus 552 ~it~d~~f~~~a~rW~~Y~~~~r~~hn 578 (578)
.|+.||+|.++|+||++|+.|+|||||
T Consensus 568 tId~dpv~~~ta~RWkgY~~G~RAKHN 594 (594)
T KOG3760|consen 568 TIDKDPVLSKTADRWKGYAYGKRAKHN 594 (594)
T ss_pred hccccHHHHHHHHHHHhhhhcccccCC
Confidence 999999999999999999999999999
No 3
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=100.00 E-value=1.5e-66 Score=504.07 Aligned_cols=189 Identities=53% Similarity=0.936 Sum_probs=183.6
Q ss_pred CCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCC
Q psy7540 138 QDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDK 217 (578)
Q Consensus 138 qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~ 217 (578)
|| ++|+|+++|+++..+++..|+|||+||||||+|||||+|||++| +|++||++|+||+++|++|+++|||+.+++++
T Consensus 1 qd-~~g~w~~~~~~~~~~~~~~l~~gW~SamaQG~a~s~l~RAy~~t-~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~ 78 (189)
T PF06662_consen 1 QD-ESGGWPYNFDYKLYEGNEVLSPGWYSAMAQGQAISVLARAYQLT-GDEKYLDAAKKALNSFKVPVEEGGVLATFKNK 78 (189)
T ss_pred CC-CcCccceeeeeccccCcccCCCCcHhHHHHHHHHHHHHHHHHhH-CCHHHHHHHHHHHHHhcChHhhCCeeEEecCC
Confidence 78 99999999999988888889999999999999999999999999 99999999999999999999999999998777
Q ss_pred cceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCc
Q psy7540 218 FPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKI 297 (578)
Q Consensus 218 ~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~ 297 (578)
++||||||++|++||||||||||+||||++..++++ +|++||++||+|||++||.||+|+||+|||+|++++.+||+
T Consensus 79 ~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~---~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~ 155 (189)
T PF06662_consen 79 YPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDE---EAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNI 155 (189)
T ss_pred cEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCc
Confidence 999999999999999999999999999999988876 79999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhcCCccccccCccccc
Q psy7540 298 ARCDYHATHVNQLLLLATIEKDKIISDTGVPVTT 331 (578)
Q Consensus 298 A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~ 331 (578)
|+|+||++||+||++|+.||+||+|+++|+||++
T Consensus 156 a~~~YH~lHi~qL~~L~~it~d~~f~~~a~rW~s 189 (189)
T PF06662_consen 156 ARWDYHRLHIQQLKWLYSITGDPIFKEYAERWKS 189 (189)
T ss_pred CcchHHHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999974
No 4
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=100.00 E-value=1.6e-63 Score=482.81 Aligned_cols=168 Identities=54% Similarity=0.919 Sum_probs=161.4
Q ss_pred cccccccccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCceeeccCCCceEeeCCCCCCceeehhHHHH
Q psy7540 397 VLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYS 476 (578)
Q Consensus 397 ~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIys 476 (578)
..+||+||||||+|||||+|||++| +|++||++|++|+++|++|+++|||+++++++++||||||++|++|||||||||
T Consensus 22 l~~gW~SamaQG~a~s~l~RAy~~t-~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiys 100 (189)
T PF06662_consen 22 LSPGWYSAMAQGQAISVLARAYQLT-GDEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYS 100 (189)
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHhH-CCHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHH
Confidence 3569999999999999999999998 699999999999999999999999999986669999999999999999999999
Q ss_pred HHHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q psy7540 477 LFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKD 556 (578)
Q Consensus 477 L~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~qL~~L~~it~d 556 (578)
|+||||++..+. +++|++||++|++|||++||+||+|+||+|||+|++++++||+|+|+||++||+||++|+.||+|
T Consensus 101 L~GLyd~~~~~~---~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d 177 (189)
T PF06662_consen 101 LIGLYDYYRLTG---DEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGD 177 (189)
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCC
Confidence 999999998774 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHh
Q psy7540 557 KIISDTGQRWAG 568 (578)
Q Consensus 557 ~~f~~~a~rW~~ 568 (578)
|+|+++|+||++
T Consensus 178 ~~f~~~a~rW~s 189 (189)
T PF06662_consen 178 PIFKEYAERWKS 189 (189)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.96 E-value=3.6e-07 Score=96.23 Aligned_cols=351 Identities=17% Similarity=0.102 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhccc
Q psy7540 124 MAQFYATAEWLVNHQ-DPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFK 202 (578)
Q Consensus 124 ~~~F~~aAdWLl~~q-d~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~ 202 (578)
...+..+.++..++. |++.||+.-.+++. |. ...+ =-..++|+..|-+|++||.++ +++.|+++|+++++...
T Consensus 13 ~~~~~~~~~fw~~~~~d~~~gg~~~~l~~~---g~-~~~~-~k~~~~~ar~i~~~a~a~~~~-~~~~~l~~A~~~~~fl~ 86 (384)
T cd00249 13 GWLLEDLLPFWLEAGLDREAGGFFECLDRD---GQ-PFDT-DRRLWLQARQVYCFAVAYLLG-WRPEWLEAAEHGLEYLD 86 (384)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEECCC---CC-CCCC-CCeEEEecHHHHHHHHHHHhc-CChhHHHHHHHHHHHHH
Confidence 344567777777754 55788876555442 21 2233 355999999999999999999 99999999999999888
Q ss_pred cccc--C-CCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCC
Q psy7540 203 LPIY--K-GGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTG 279 (578)
Q Consensus 203 ~p~~--~-GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g 279 (578)
.... + ||+...+..+.. |.. +..-|+.+.|.+.||=.++++++++. +.++-.+.+..+.+.+- -+.|
T Consensus 87 ~~~~d~~~Gg~~~~~~~~g~-----~~~-~~~~l~~~a~~l~ala~~~~at~d~~---~l~~A~~~~~~l~~~~~-~~~g 156 (384)
T cd00249 87 RHGRDPDHGGWYFALDQDGR-----PVD-ATKDLYSHAFALLAAAQAAKVGGDPE---ARALAEETIDLLERRFW-EDHP 156 (384)
T ss_pred HhCcCCCCCCEEEEEcCCCC-----Ccc-cccchHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhc-cCCC
Confidence 7632 4 887665421211 111 22359999999999999999999874 44444444445555442 1223
Q ss_pred C-cceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCCcccChhhHHhhhhhccccccCC
Q psy7540 280 S-GSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTE 358 (578)
Q Consensus 280 ~-wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~ 358 (578)
. +...+ .. ..+... ..=|..++.-|..|+.+|+|+.+.+.|++...... .++ ..
T Consensus 157 ~~~~~~~--~~---~~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~---------------~~~----~~ 211 (384)
T cd00249 157 GAFDEAD--PG---TPPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLIL---------------DRF----ID 211 (384)
T ss_pred cccCCCC--CC---CCCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---------------HHh----cC
Confidence 2 21111 10 111111 23344445568899999999988888874333222 111 11
Q ss_pred CCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhcc
Q psy7540 359 PEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVF 438 (578)
Q Consensus 359 ~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f 438 (578)
++.. .+++. ...+|-+.. ... . ...+.| .|.+++..|.+++..+ ++++|++.|++.++.+
T Consensus 212 ~~~G-~~~e~---~~~~~~~~~-~~~---------~---~~~~Pg--h~~e~a~~ll~l~~~~-~~~~~~~~a~~~~~~~ 271 (384)
T cd00249 212 AESG-VVREH---FDEDWNPYN-GDK---------G---RHQEPG--HQFEWAWLLLRIASRS-GQAWLIEKARRLFDLA 271 (384)
T ss_pred cccC-eEEEE---ECCCCCCCc-CcC---------C---CcCCCc--hHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 1111 12221 112342210 000 0 001112 2566777899999887 6999999999887755
Q ss_pred cc---cccCCCceeeccC-CCceEeeCCCCCCceeehhHHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhcccc
Q psy7540 439 KL---PIYKGGVQSKFLD-KFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYD 514 (578)
Q Consensus 439 ~~---p~~~GGv~~~~~~-~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD 514 (578)
.- ..+.||+.....+ ... | ....-..+...-++.++-.+++++++. +..+.+++-...+.+.+..-.
T Consensus 272 ~~~~~d~~~G~~~~~~~~~~~~-----~-~~~~~~~w~~~E~~~a~~~l~~~tgd~---~~~~~~~~~~~~~~~~~~d~~ 342 (384)
T cd00249 272 LALGWDPERGGLYYSFLDDGGL-----L-EDDDKRWWPQTEALKAALALAGITGDE---RYWQWYQRAWAYLWRHFIDPE 342 (384)
T ss_pred HHhCcCccCCCEEEeeECCCCC-----c-ccccccccHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHhcCCCC
Confidence 42 3344666652222 221 2 222445678888999999988888764 445556666666666555444
Q ss_pred CCCcccccccccccCCCC-CCCCCChHHHHH
Q psy7540 515 TGSGSSYDLRHISLGIAP-KIARCDYHATHV 544 (578)
Q Consensus 515 ~G~wS~Ydl~h~~~~~~p-~~A~~~YH~lHi 544 (578)
.|.|-.+--........+ ..++..||.+--
T Consensus 343 ~G~w~~~~~~~g~~~~~~~~~~~~~yH~~~a 373 (384)
T cd00249 343 YGLWFGYLDADGKVLLTPKGPAKTFYHVVRA 373 (384)
T ss_pred CCcceeeECCCCCCcCCCCCCCCCCccHHhH
Confidence 566655433333322333 567789997654
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.72 E-value=9.6e-07 Score=92.98 Aligned_cols=268 Identities=12% Similarity=0.037 Sum_probs=160.0
Q ss_pred chHHHHHHHHHHHHHHhcCCCCC-CCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHh
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKT-GGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRAL 198 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~-G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal 198 (578)
.++.++...+++++|.++...++ |+|.-.+++. + ....++ .....|+..+..|+.+|++| +|++||+.|++++
T Consensus 71 ~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~---g-~~~~~~-~~l~~~a~~l~ala~~~~at-~d~~~l~~A~~~~ 144 (384)
T cd00249 71 RPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQD---G-RPVDAT-KDLYSHAFALLAAAQAAKVG-GDPEARALAEETI 144 (384)
T ss_pred ChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCC---C-CCcccc-cchHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 57889999999999999885245 9996555432 2 122223 36789999999999999999 9999999999999
Q ss_pred hcccccc--cCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHHHHHHHhh----
Q psy7540 199 KVFKLPI--YKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQGITSLKR---- 271 (578)
Q Consensus 199 ~~f~~p~--~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~Gi~SLk~---- 271 (578)
+.+.... +.||....+..+ + ...++ +|+++.-+.+|..+..+|+++.. +.|.++++.-+..+..
T Consensus 145 ~~l~~~~~~~~g~~~~~~~~~--~-----~~~~~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G 215 (384)
T cd00249 145 DLLERRFWEDHPGAFDEADPG--T-----PPYRG--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESG 215 (384)
T ss_pred HHHHHHhccCCCcccCCCCCC--C-----CCCCC--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccC
Confidence 9887664 445543222111 1 11122 79998777777777789998743 4566666654443211
Q ss_pred hccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCCcccChhhHHhhhhhc
Q psy7540 272 MLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSH 351 (578)
Q Consensus 272 ~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~ 351 (578)
.++.+...+|+..+- ..+....|.-..-.+..|..|+.+++|+.+.+.|++........+ .+|. .|
T Consensus 216 ~~~e~~~~~~~~~~~------~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~-~d~~----~G--- 281 (384)
T cd00249 216 VVREHFDEDWNPYNG------DKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALG-WDPE----RG--- 281 (384)
T ss_pred eEEEEECCCCCCCcC------cCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-cCcc----CC---
Confidence 111111223332110 112222344334456778899999999988888875433322111 1111 01
Q ss_pred cccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCCChhHHHHH
Q psy7540 352 YSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTA 431 (578)
Q Consensus 352 Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA 431 (578)
-++.. .++..+.. ..+ ....|. |.++|..+.++|..| ||++|++.+
T Consensus 282 ------------~~~~~--------~~~~~~~~---~~~------~~~~w~----~~E~~~a~~~l~~~t-gd~~~~~~~ 327 (384)
T cd00249 282 ------------GLYYS--------FLDDGGLL---EDD------DKRWWP----QTEALKAALALAGIT-GDERYWQWY 327 (384)
T ss_pred ------------CEEEe--------eECCCCCc---ccc------cccccH----HHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 01110 00000000 001 012343 999999999999988 699999988
Q ss_pred HHhhhcc---cccccCCCceee
Q psy7540 432 LRALKVF---KLPIYKGGVQSK 450 (578)
Q Consensus 432 ~kal~~f---~~p~~~GGv~~~ 450 (578)
.+..+.. .+..+.||....
T Consensus 328 ~~~~~~~~~~~~d~~~G~w~~~ 349 (384)
T cd00249 328 QRAWAYLWRHFIDPEYGLWFGY 349 (384)
T ss_pred HHHHHHHHHhcCCCCCCcceee
Confidence 8875443 344455665543
No 7
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.64 E-value=0.003 Score=66.37 Aligned_cols=312 Identities=19% Similarity=0.155 Sum_probs=161.9
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccc---cCCCeeeeecCCcceeecCCCCCCceeechHHHHHH
Q psy7540 165 YSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPI---YKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLF 241 (578)
Q Consensus 165 ~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~---~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLi 241 (578)
-..+.||..+=+|++||+ + |++.|+++|+++++.+.... +.||+......+.+ . .+..-+=+..|+++
T Consensus 18 k~~~~q~R~~~~fa~a~~-~-g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~-~------~~~~~~Y~~af~l~ 88 (346)
T PF07221_consen 18 KRLWVQARQLYTFARAYR-L-GRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGP-L------DPQKDLYDQAFALL 88 (346)
T ss_dssp EEHHHHHHHHHHHHHHHH-T-TSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEE-E------E--EEHHHHHHHHH
T ss_pred ceeeeeHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCC-C------ccccchHHHHHHHH
Confidence 578899999999999999 9 79999999999999877664 45776554433332 1 12334567889999
Q ss_pred hhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCCCc-ceecccccccCCCCCcCCCchhHHH---HHHHHHHHhhc
Q psy7540 242 GLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSG-SSYDLRHISLGIAPKIARCDYHATH---VNQLLLLATIE 317 (578)
Q Consensus 242 GLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~w-S~Ydl~h~~~~~~pn~A~~~YH~lH---i~qL~~L~~it 317 (578)
+|.. +.+++++ ++.++-++-+..|.+.+-.=+.|.+ ..++- .. .+. --+..| +.-+..|+.+|
T Consensus 89 ala~-~~~tg~~---~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-~~----~~~----r~~n~~mhl~eA~l~l~~~~ 155 (346)
T PF07221_consen 89 ALAE-ARATGDP---EALELAEQTLEFLERRFWDPEGGGYRESFDP-DW----SPP----RGQNPHMHLLEAFLALYEAT 155 (346)
T ss_dssp HHHH-HHCTT-T---THHHHHHHHHHHHHHHTEETTTTEE--EETT-TS----SCB----EEHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhCCh---hHHHHHHHHHHHHHHHhcccccCcceeccCC-cc----ccC----CCCChhHHHHHHHHHHHHhc
Confidence 9999 7788876 3445555555566665532222322 22221 00 011 013333 23356789999
Q ss_pred CCccccccCcccccccCCCcccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCccccccccccccc
Q psy7540 318 KDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYV 397 (578)
Q Consensus 318 ~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~ 397 (578)
+|+.+++.|.+... .-+.++-. ++.. .+. +....||-....+... |...+ +.
T Consensus 156 ~~~~~~~~a~~l~~---------------~~~~~f~~----~~~g-~~~---E~f~~dw~~~~~~~~~----d~~~~-~~ 207 (346)
T PF07221_consen 156 GDPRYLDRAEELLD---------------LFLDRFAD----PESG-ALP---EFFDRDWNPLPDGSGD----DTFRG-RI 207 (346)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTTCHH----CCTT-EET---SEEETTSEBETTTTTT----HSTTT-SS
T ss_pred cCHHHHHHHHHHHH---------------HHHHHHHH----hccC-eee---eeeccccccccccccc----ccccc-Cc
Confidence 99999877773332 22221111 1111 111 1234567764212111 11111 11
Q ss_pred ccccccccchhhHH---HHHHHHH--hhcCCChhHHHHHHHhhhcc---cccccCCCceeeccCCCceEeeCCCCCCcee
Q psy7540 398 LNFHTSAMGQGHAI---SVLSRAY--YHSGGNVTYLNTALRALKVF---KLPIYKGGVQSKFLDKFPWYEEYPTTPAVFI 469 (578)
Q Consensus 398 ~~~w~SaMaQG~ai---Svl~RAY--~~t~gd~~YL~aA~kal~~f---~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~V 469 (578)
..| |+.+ -+|.++- ... +++.+++.|.+.+... -+..+-||+.......+. |.. ..-+
T Consensus 208 ~~p-------GH~~E~~wll~~~~~~~~~-~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~-----~~~-~~k~ 273 (346)
T PF07221_consen 208 VEP-------GHDFEWAWLLLEAARLTGR-GDPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGK-----PPD-RSKR 273 (346)
T ss_dssp B-H-------HHHHHHHHHHHHHHHHCHC-T-HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS------BSS-T-EE
T ss_pred cCC-------chhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCC-----ccc-cCcc
Confidence 122 5555 4777766 445 5889998876544322 123344455532111110 000 1111
Q ss_pred ehhHHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCC-CCCCCCChHHHH
Q psy7540 470 LNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIA-PKIARCDYHATH 543 (578)
Q Consensus 470 LNGfIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~-p~~A~~~YH~lH 543 (578)
+=-+.=+|.++...++++++ +...+.|.+-.+-+.+.++.-+.|.|=-+--++...-.+ |.-++..||.+.
T Consensus 274 wW~q~Eal~a~~~~~~~tg~---~~~~~~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~~~~~~g~~~~YH~~~ 345 (346)
T PF07221_consen 274 WWPQAEALKALLAAYELTGD---EKYLDWARRVWDYIFRHFIDPEYGEWFDYLDRDGSPLEKVKAGKSSLYHIVR 345 (346)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTB-TTTSSB-SEE-TTS-BSCSBSTSSSS-TTTHH
T ss_pred ccHHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHHHhCCCCCCCeeEeeECCCCCCCCCCCCCCCCcccccC
Confidence 11122234444445555644 467778899999999999877778776554444432111 112244599763
No 8
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.35 E-value=0.0063 Score=68.29 Aligned_cols=303 Identities=17% Similarity=0.191 Sum_probs=167.1
Q ss_pred ccccCchHHHHHHHHHHHHHHhcCC-------CCCCCcccccccccccCCC-CCCCCchhhhhhhHHHHHHHHHHHhcCC
Q psy7540 115 NLTLSTSDHMAQFYATAEWLVNHQD-------PKTGGWPNPVRRRITAGIG-DLKPGWYSAMGQGHAISVLSRAYYHSGG 186 (578)
Q Consensus 115 n~~l~~~~~~~~F~~aAdWLl~~qd-------~~~G~W~~~~~~~~~~~~~-~L~~gW~SaMaQG~aiSvL~RAY~~t~g 186 (578)
+++|+.+...+++....++++..+. ....+.++.- ..+ .+.+ .-+..+..+=..|+=||.++++|..| +
T Consensus 1 ~V~l~~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~-~~~-g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~-~ 77 (520)
T PF07944_consen 1 DVRLTDGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFA-IAY-GGWEGEFPGWWFRGHDVGKWLEAAAYAYAYT-G 77 (520)
T ss_pred CeEECcHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCcc-ccC-CCCccCCCCCccCCCcHHHHHHHHHHHHHHC-C
Confidence 3566677778888888888887662 0111111110 011 1111 12233445557789999999999999 9
Q ss_pred ChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCC---CceeechHHHHHHhhhhhhhhCCCccHHHHHHHHH
Q psy7540 187 NVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTP---AVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYD 263 (578)
Q Consensus 187 D~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p---~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~ 263 (578)
|++..+.+.+.++.+..--+..|-+..+.....+-......| .-|.+-- -+-||-|++++|+++. |..+..
T Consensus 78 D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~---ll~gl~~~y~~tG~~~---~L~v~~ 151 (520)
T PF07944_consen 78 DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGK---LLEGLIDYYEATGNER---ALDVAT 151 (520)
T ss_pred CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhH---HHHHHHHHHHHHCcHH---HHHHHH
Confidence 999999999999998888777787776543221111222222 2333322 2346667777999873 444333
Q ss_pred HHHHHHhhhccCccCCCcce-ecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCCcccChh
Q psy7540 264 QGITSLKRMLNMYDTGSGSS-YDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPT 342 (578)
Q Consensus 264 ~Gi~SLk~~Lp~yD~g~wS~-Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~ 342 (578)
+=.+=+.+.+..++.+.+-. ...+ |.--..-|.+||.+|+|+.+.+.|+++..++..+ |
T Consensus 152 k~ad~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~----~- 211 (520)
T PF07944_consen 152 KLADWVYRRLSRLGPEPGQKMGYPE---------------HGGINEALVRLYEITGDERYLDLAEYFVDQRGFD----P- 211 (520)
T ss_pred HHHHHHHHHhccCCHHHhhcccccc---------------cchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----C-
Confidence 33333322233333322110 0011 2222245899999999999999999888877744 3
Q ss_pred hHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcC
Q psy7540 343 QIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSG 422 (578)
Q Consensus 343 ~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~ 422 (578)
++ +.... + ..+. ++-+.... -++-...+.+-+++.|..|
T Consensus 212 ---------~~--~~~~~---------d------~~~~------~~a~~~~~--------h~vr~~y~~~g~a~~y~~t- 250 (520)
T PF07944_consen 212 ---------YD--LAYGQ---------D------HLPG------RHANTHIG--------HAVRAMYLYSGAADLYEET- 250 (520)
T ss_pred ---------Cc--hhhcC---------c------cCCC------ccccceee--------EEEEhhhhhhHHHHHHHHh-
Confidence 00 00000 0 0110 00000001 1222234555567999888
Q ss_pred CChhHHHHHHHhhhcccc--cccCCCceeeccCCCceEeeC--CC---CCCceeehhHHHHHHHhHhhhhcCCcch
Q psy7540 423 GNVTYLNTALRALKVFKL--PIYKGGVQSKFLDKFPWYEEY--PT---TPAVFILNGFIYSLFGLYDLVTLSPRSK 491 (578)
Q Consensus 423 gd~~YL~aA~kal~~f~~--p~~~GGv~~~~~~~~~wyeEY--pt---~p~s~VLNGfIysL~GLyD~~~~~~~~~ 491 (578)
||++|+++|+++.+...- -..-||+-+.. ..-.|-+.| |+ ...++.--++|+...-|+.+ +++..
T Consensus 251 gd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~-~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~---tgd~~ 322 (520)
T PF07944_consen 251 GDEEYLDAAENFWDNVVRHHMYATGGIGSDH-EGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRL---TGDAR 322 (520)
T ss_pred CCHHHHHHHHHHHHHHHhcCeeccCCCcCCC-CCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhc---CCCch
Confidence 799999999998875431 22235555431 111222222 21 14577778888888666555 76653
No 9
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.52 Score=54.53 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCceeeccCCCceEeeCCCCCCceeehhHHHHHHHhHhhhhcC
Q psy7540 408 GHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLS 487 (578)
Q Consensus 408 G~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~ 487 (578)
|.+|+-|+.|+..+ ||++|+++|+++.+.-.-..-.+.+...+..+.. ...+ .|--+-|-..||-++++++
T Consensus 414 glmi~aLa~a~~~~-~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a------~~~g--~leDYA~~i~gll~lye~t 484 (667)
T COG1331 414 GLMIAALAEAGRVL-GDPEYLEAAERAADFILDNLYVDRLLRRYRGGEA------AVAG--LLEDYAFLILGLLALYEAT 484 (667)
T ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhcccchheeeecCcc------cccc--cchhHHHHHHHHHHHHHhh
Confidence 77889999999988 7999999999999866554444433333333321 1112 2556778888999999998
Q ss_pred Ccch-hHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCC---CCCC---CCCChHHHHHHHHHHHHhhcCChhhH
Q psy7540 488 PRSK-QKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGI---APKI---ARCDYHATHVNQLLLLATIEKDKIIS 560 (578)
Q Consensus 488 ~~~~-~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~---~p~~---A~~~YH~lHi~qL~~L~~it~d~~f~ 560 (578)
.+.. .+.|.+|-++-+.. .+|.+.+ +|+.....-.. +... +-+.=-++-+..|..|..+|+|.-+.
T Consensus 485 ~d~~yL~~A~~L~~~~i~~------f~d~~gG-f~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~ 557 (667)
T COG1331 485 GDLAYLEKAIELADEAIAD------FWDDEGG-FYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYL 557 (667)
T ss_pred CcHHHHHHHHHHHHHHHHH------hcCCCCC-cccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHH
Confidence 6643 47788777754443 2455544 88865543211 1111 22233478889999999999999999
Q ss_pred HHHHHHHhhhhcc
Q psy7540 561 DTGQRWAGYIQGK 573 (578)
Q Consensus 561 ~~a~rW~~Y~~~~ 573 (578)
+.|.+=.+-..|.
T Consensus 558 e~A~~~L~a~~~~ 570 (667)
T COG1331 558 EAAEDILQAFAGL 570 (667)
T ss_pred HHHHHHHHHHHHH
Confidence 9988755444443
No 10
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=96.36 E-value=0.035 Score=57.21 Aligned_cols=167 Identities=14% Similarity=0.026 Sum_probs=93.6
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHh
Q psy7540 119 STSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRAL 198 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal 198 (578)
.++++.+....++++|+++.. ....|+...+. ....+||..+.| --+-+|.++|+.| +|++|++.|++++
T Consensus 99 ~~~~~l~~a~~~~~~l~~~~~-~~~~~~~~~~~------~~~~~G~~hG~a--Gi~~~L~~l~~~t-~d~~~l~~A~~~~ 168 (321)
T cd04791 99 GDPALLEAAAKIAELLAEALE-RGDPALLWPDF------DRVDHGLLHGWA--GIALFLLRLYKAT-GDSRYLELAEEAL 168 (321)
T ss_pred CChHHHHHHHHHHHHHHHHhh-ccccccccccC------CCCCCccccCcH--HHHHHHHHHHHHH-CCHHHHHHHHHHH
Confidence 457889999999999998865 32233211111 111233433222 2345578999999 9999999999999
Q ss_pred hccccc--ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCc
Q psy7540 199 KVFKLP--IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMY 276 (578)
Q Consensus 199 ~~f~~p--~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~y 276 (578)
+..... .+++|....- ++.. .....-+|--=.++.|..+.++++|+... +..++.+.++....
T Consensus 169 ~~~~~~~~~~~~g~~~~~-~~~~--------~~~~wchG~aGi~~~l~~l~~~~~d~~~~---~~a~~~~~~~~~~~--- 233 (321)
T cd04791 169 DKELARAVVDDGGLLQVD-EGAR--------LLPYLCSGSAGLGLLMLRLEAITGDKRWR---DEADGIAHAALSSC--- 233 (321)
T ss_pred HHHHHhhccCCCCceEcC-CCCc--------cCcccCCCcHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHhhhh---
Confidence 876533 2334432210 1111 11234444433344444445578876433 23344444433221
Q ss_pred cCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCc
Q psy7540 277 DTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGV 327 (578)
Q Consensus 277 D~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~ 327 (578)
|....+-|+..| -...|..++..++|+.+++.+.
T Consensus 234 ----~~~~~lchG~~G-------------~~~~l~~~~~~~~~~~~~~~~~ 267 (321)
T cd04791 234 ----YANPGLFSGTAG-------------LGAHLNDLAAEGDNALYKAAAE 267 (321)
T ss_pred ----ccCccccCCcHh-------------HHHHHHhhcccccChHHHHHHH
Confidence 334456666432 1344677788999999888777
No 11
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.011 Score=67.74 Aligned_cols=158 Identities=21% Similarity=0.237 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCc----ceeecCCCCCCceeechHHHHHHhhhh
Q psy7540 170 QGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKF----PWYEEYPTTPAVFILNGFIYSLFGLYD 245 (578)
Q Consensus 170 QG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~----~wyeEYpt~p~~~VLNGfiysLiGLYD 245 (578)
.|.+|+.|+.|+.++ +|++|+++|+++.+.-....-.+...-.+.++. -..|+|+ |-..||=+
T Consensus 413 Nglmi~aLa~a~~~~-~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA------------~~i~gll~ 479 (667)
T COG1331 413 NGLMIAALAEAGRVL-GDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYA------------FLILGLLA 479 (667)
T ss_pred HHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHH------------HHHHHHHH
Confidence 689999999999999 999999999999986666655444433333332 3345554 44555555
Q ss_pred hhhhCCCcc-HHHHHHHHHHHHHHHhhhccCccCCCcceecccccc---------cCCCCCcCCCchhHHHHHHHHHHHh
Q psy7540 246 LVTLSPRSK-QKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHIS---------LGIAPKIARCDYHATHVNQLLLLAT 315 (578)
Q Consensus 246 ~~~~t~d~~-~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~---------~~~~pn~A~~~YH~lHi~qL~~L~~ 315 (578)
+++++.|.. .+.|.+|-++-|..+ +|.+.+ +|+..... ....++ +.=-++-+..|.+|..
T Consensus 480 lye~t~d~~yL~~A~~L~~~~i~~f------~d~~gG-f~~t~~~~~~l~ir~~~~~D~a~---~S~na~~~~~L~~Ls~ 549 (667)
T COG1331 480 LYEATGDLAYLEKAIELADEAIADF------WDDEGG-FYDTPSDSEDLLIRPKEPTDGAT---PSGNAVAAQALLRLSL 549 (667)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHHh------cCCCCC-cccCCCcccccccCCCCCCCCCC---CCHHHHHHHHHHHHHh
Confidence 555887654 467888877666552 444433 66632211 111122 2234788999999999
Q ss_pred hcCCccccccCcccccccCCCcccChhhHHhhhhh
Q psy7540 316 IEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLS 350 (578)
Q Consensus 316 it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~ 350 (578)
+|+|..+.+.|.+-.+......-=+|...+.+.++
T Consensus 550 ltg~~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~a 584 (667)
T COG1331 550 LTGDARYLEAAEDILQAFAGLAERAPFAHAGLLLA 584 (667)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence 99999999999876655554433345555555544
No 12
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.05 E-value=0.03 Score=62.88 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchh----hhhhhHHHHHHHHHHHhcCCChhHHHHH
Q psy7540 119 STSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYS----AMGQGHAISVLSRAYYHSGGNVTYLNTA 194 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~S----aMaQG~aiSvL~RAY~~t~gD~kYL~aA 194 (578)
.+++.+++.....++|.+.|+ ++| |...+.... .......|.. -.++|+-|..|+-+|+.| |+++-|++|
T Consensus 77 ~D~~l~~~~d~~V~~l~~~Q~-~dG-Yl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~t-G~~~~L~v~ 150 (520)
T PF07944_consen 77 GDPELKAKADEIVDELAAAQQ-PDG-YLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEAT-GNERALDVA 150 (520)
T ss_pred CCHHHHHHHHHHHHHHHHhcc-CCc-eeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHH-CcHHHHHHH
Confidence 458899999999999999999 887 443432211 1134556777 788999999999999999 999999999
Q ss_pred HHHhhcc---cccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHH
Q psy7540 195 LRALKVF---KLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYD 263 (578)
Q Consensus 195 ~kal~~f---~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~ 263 (578)
.|.++++ ......+. ....|..|++. ..-+|..|| ++|+|+.+-+..+.|.
T Consensus 151 ~k~ad~~~~~~~~~~~~~------~~~~~~~~~~~---------i~~~l~~LY---~~Tgd~~yL~lA~~f~ 204 (520)
T PF07944_consen 151 TKLADWVYRRLSRLGPEP------GQKMGYPEHGG---------INEALVRLY---EITGDERYLDLAEYFV 204 (520)
T ss_pred HHHHHHHHHHhccCCHHH------hhcccccccch---------HHHHHHHHH---HHhCCHHHHHHHHHHH
Confidence 9999999 32211111 12345555542 224455555 5999987665444444
No 13
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=95.94 E-value=0.038 Score=58.18 Aligned_cols=148 Identities=21% Similarity=0.230 Sum_probs=95.0
Q ss_pred ccccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccc---cCCCceeeccCCCceEeeCCCCCCceeehhHHHHHH
Q psy7540 402 TSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPI---YKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLF 478 (578)
Q Consensus 402 ~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~---~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~ 478 (578)
-..+.||.-+=++++||+ + |++.|+++|+++++.+.-.. +.||.......+++ ..+..-+=+..|+++
T Consensus 18 k~~~~q~R~~~~fa~a~~-~-g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~-------~~~~~~~Y~~af~l~ 88 (346)
T PF07221_consen 18 KRLWVQARQLYTFARAYR-L-GRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGP-------LDPQKDLYDQAFALL 88 (346)
T ss_dssp EEHHHHHHHHHHHHHHHH-T-TSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEE-------EE--EEHHHHHHHHH
T ss_pred ceeeeeHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCC-------CccccchHHHHHHHH
Confidence 367899999999999998 6 69999999999998877555 45777655433332 112334668899999
Q ss_pred HhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCC-cccccccccccCCCCCCCCCChHHHHHH---HHHHHHhhc
Q psy7540 479 GLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGS-GSSYDLRHISLGIAPKIARCDYHATHVN---QLLLLATIE 554 (578)
Q Consensus 479 GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~-wS~Ydl~h~~~~~~p~~A~~~YH~lHi~---qL~~L~~it 554 (578)
||.. +.+++++ +|.++-++-+..|.+.+-.=+.|. ...++ +.....--+..|.. -+..|+.+|
T Consensus 89 ala~-~~~tg~~---~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~---------~~~~~~r~~n~~mhl~eA~l~l~~~~ 155 (346)
T PF07221_consen 89 ALAE-ARATGDP---EALELAEQTLEFLERRFWDPEGGGYRESFD---------PDWSPPRGQNPHMHLLEAFLALYEAT 155 (346)
T ss_dssp HHHH-HHCTT-T---THHHHHHHHHHHHHHHTEETTTTEE--EET---------TTSSCBEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhCCh---hHHHHHHHHHHHHHHHhcccccCcceeccC---------CccccCCCCChhHHHHHHHHHHHHhc
Confidence 9999 6777554 455555666667766663222232 22122 11111111444433 345789999
Q ss_pred CChhhHHHHHHHHhhhh
Q psy7540 555 KDKIISDTGQRWAGYIQ 571 (578)
Q Consensus 555 ~d~~f~~~a~rW~~Y~~ 571 (578)
+|+.+++.+++=..-+.
T Consensus 156 ~~~~~~~~a~~l~~~~~ 172 (346)
T PF07221_consen 156 GDPRYLDRAEELLDLFL 172 (346)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999998887655443
No 14
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=95.58 E-value=0.084 Score=55.54 Aligned_cols=109 Identities=22% Similarity=0.193 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhccccc-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhC
Q psy7540 172 HAISVLSRAYYHSGGNVTYLNTALRALKVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLS 250 (578)
Q Consensus 172 ~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t 250 (578)
..|-.|+|+|+.| +|++|.+|+.||++....- ...||.-..+.... .|.++.| |-=|+++-+|.=|-+.++..
T Consensus 48 ~e~~fLa~~y~~t-~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~IT----fND~am~~vl~lL~~i~~~~ 121 (290)
T TIGR02474 48 TEIRYLAQVYQQE-KNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAIT----YNDNAMVNVLTLLDDIANGK 121 (290)
T ss_pred HHHHHHHHHHHhc-CchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-Ccccccc----cCcHHHHHHHHHHHHHHhcc
Confidence 4578899999999 9999999999999987665 77899755543333 3333333 22345666666665544322
Q ss_pred ------CCccHHHHHHHHHHHHHH-HhhhccC--ccCCCcceecc
Q psy7540 251 ------PRSKQKEALSLYDQGITS-LKRMLNM--YDTGSGSSYDL 286 (578)
Q Consensus 251 ------~d~~~~~A~~lf~~Gi~S-Lk~~Lp~--yD~g~wS~Ydl 286 (578)
.+...+++..-+++||.- |+.-+|. --+++.-+||-
T Consensus 122 ~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~ 166 (290)
T TIGR02474 122 DPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDA 166 (290)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCc
Confidence 233335778889999995 4555553 22334467773
No 15
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=95.54 E-value=0.36 Score=56.94 Aligned_cols=286 Identities=18% Similarity=0.191 Sum_probs=144.1
Q ss_pred CCCchhhhhhhHHHH-HHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCce-eechHHH
Q psy7540 161 KPGWYSAMGQGHAIS-VLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVF-ILNGFIY 238 (578)
Q Consensus 161 ~~gW~SaMaQG~aiS-vL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~-VLNGfiy 238 (578)
.++-|++.+ ||. +|.+.+++| +|++|.+.|.++++......++.+.. ....+.| =+-|-+|
T Consensus 486 ~~~LY~G~a---GIal~l~~l~~~t-~~~~~~~~a~~~l~~l~~~~~~~~~~-------------~~~~gl~~G~aGi~~ 548 (825)
T cd04792 486 GNDLYDGSA---GIALFLAYLGQLT-GDERYTRLARKILDSLVKSLSELKTD-------------DTGIGAFSGLGGILY 548 (825)
T ss_pred CCcccCChH---HHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHhccccc-------------ccCceeEechhHHHH
Confidence 444444443 444 446779999 99999999999999876554433210 1111111 1235666
Q ss_pred HHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcC
Q psy7540 239 SLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEK 318 (578)
Q Consensus 239 sLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~ 318 (578)
+|.-||. .++++.+. +...+.+..+...++ ....+|+-|+. |+. +..|..+++.++
T Consensus 549 ~L~~l~~---~~~~~~~~---~~a~~~~~~l~~~~~-----~~~~~D~~~G~-------aGi------i~~Ll~l~~~~~ 604 (825)
T cd04792 549 ALTHLGK---LLKDDRLL---NLAKEILDLIDELIE-----KDEKLDFISGA-------AGL------ILVLLSLYELFL 604 (825)
T ss_pred HHHHHHH---HcCCHHHH---HHHHHHHHHHHHhhc-----cccCCCEeeec-------HHH------HHHHHHHHhccC
Confidence 6665555 67776432 223333344444332 12335665552 222 344667888899
Q ss_pred CccccccCcccccccCCCcccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccc
Q psy7540 319 DKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVL 398 (578)
Q Consensus 319 D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~ 398 (578)
|+.+.+.|.+... +-+.. .. +. .+|..+. . . ...
T Consensus 605 ~~~~l~~a~~~~~---------------~l~~~----~~-~~-------------~~~~~~~-~-----------~-~~~ 638 (825)
T cd04792 605 SERFLDLALKCGD---------------HLLEN----AS-NE-------------DGGIGPA-E-----------Q-PNL 638 (825)
T ss_pred ChHHHHHHHHHHH---------------HHHHh----hh-hc-------------cCCcccc-c-----------c-ccc
Confidence 9888776652222 21110 00 00 0122110 0 0 001
Q ss_pred cccccccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCceeeccCCCceEeeCCCCCCceeehhHHHHHH
Q psy7540 399 NFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLF 478 (578)
Q Consensus 399 ~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~ 478 (578)
.+|.-+.+ |. +.+|.++|..+ +|++|+++|.++++.......+ ....|. .........||-....
T Consensus 639 ~G~aHG~s-Gi-~~aL~~l~~~~-~d~~~~~~a~~~l~~~~~~~~~--------~~~~w~----~~~~~~~~~~WChG~~ 703 (825)
T cd04792 639 TGFAHGAS-GI-AWALLRLYKVT-GDSRYLKLAHKALKYERRLFSE--------EGWNWP----RKDGNSFSAAWCHGAP 703 (825)
T ss_pred ccccccHH-HH-HHHHHHHHHHc-CcHHHHHHHHHHHHHHHHhcCH--------hhcCCC----CcCcCCCCCcccCCcH
Confidence 12322222 22 24788899887 6999999999999743211111 122342 1111112233333333
Q ss_pred Hh----Hhhhhc--CCcchhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCCCCCCCCChHHHHHHHHHHHHh
Q psy7540 479 GL----YDLVTL--SPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLAT 552 (578)
Q Consensus 479 GL----yD~~~~--~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~qL~~L~~ 552 (578)
|+ ..+.++ .+++ +-.+.-++.+.++.. . |.+.-..++|...| + +.-|..++.
T Consensus 704 GI~lal~~~~~~~~~~d~---~~~~~i~~~~~~~~~---~---~~~~~~slCHG~~G---i----------l~~ll~~~~ 761 (825)
T cd04792 704 GILLARLELLKFNDLDDE---ELKEEIEIALKTTLK---E---GFGNNHSLCHGDLG---N----------LEILLYAAK 761 (825)
T ss_pred HHHHHHHHHHhcCccchH---HHHHHHHHHHHHHHH---h---cCCCCCeecCCCcc---h----------HHHHHHHHH
Confidence 32 333333 2221 122222333443332 1 23444667777643 1 344777888
Q ss_pred hcCChhhHHHHHHHHhhh
Q psy7540 553 IEKDKIISDTGQRWAGYI 570 (578)
Q Consensus 553 it~d~~f~~~a~rW~~Y~ 570 (578)
.++|+.+++.++++...+
T Consensus 762 ~~~~~~~~~~a~~~~~~l 779 (825)
T cd04792 762 AFGDEKLQELANSLAIKV 779 (825)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 999999999999887655
No 16
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=95.35 E-value=0.043 Score=57.65 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchh-------hhhhhHHHHHHHHHHHhcCCC-----
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYS-------AMGQGHAISVLSRAYYHSGGN----- 187 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~S-------aMaQG~aiSvL~RAY~~t~gD----- 187 (578)
.+.++++|.+++|||+.-|- ++||||-.+.- +.+++. ||. ..|.+|..+++-. ++
T Consensus 62 d~~y~~A~~rgld~LL~aQy-pnGGWPQf~p~---------~~~Y~~~ITfND~am~--~vl~lL~~i~~~~-~~~~~~~ 128 (290)
T TIGR02474 62 NAKYRDAARKGIEYLLKAQY-PNGGWPQFYPL---------KGGYSDAITYNDNAMV--NVLTLLDDIANGK-DPFDVFP 128 (290)
T ss_pred chhHHHHHHHHHHHHHhhhC-CCCCcCcccCC---------cCCcccccccCcHHHH--HHHHHHHHHHhcc-CCccccc
Confidence 37799999999999999999 99999966532 123333 354 7888888888755 43
Q ss_pred ----hhHHHHHHHHhhccccc-ccCCCeeeee
Q psy7540 188 ----VTYLNTALRALKVFKLP-IYKGGVQSKF 214 (578)
Q Consensus 188 ----~kYL~aA~kal~~f~~p-~~~GGvl~~~ 214 (578)
+++..|..||++..... +.+||.+..+
T Consensus 129 ~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~W 160 (290)
T TIGR02474 129 DSTRTRAKTAVTKGIECILKTQVVQNGKLTVW 160 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcCCch
Confidence 68999999999988877 7788876654
No 17
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=95.21 E-value=0.022 Score=61.27 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=86.3
Q ss_pred eeeccccccccccCc-h-----HHHHHHHHHHHHHHhcCCCC--CCC--cccccccccccCCCCCCCCchhhhhhhHHHH
Q psy7540 106 HLYGSGSIDNLTLST-S-----DHMAQFYATAEWLVNHQDPK--TGG--WPNPVRRRITAGIGDLKPGWYSAMGQGHAIS 175 (578)
Q Consensus 106 ~~~g~g~~~n~~l~~-~-----~~~~~F~~aAdWLl~~qd~~--~G~--W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiS 175 (578)
...|+..++-+.++. + ++++......+++...-|.. .|| |...- . +-...--.+.+.|.++.
T Consensus 91 aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~---~-----~~~~~~Kna~sN~~~~~ 162 (370)
T PF03663_consen 91 AWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDD---T-----NSGYDYKNAISNGPAAQ 162 (370)
T ss_dssp HHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET------------TEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccc---c-----CCCCCcccccchHHHHH
Confidence 345667777777744 5 78999999999998666733 366 55321 0 01222356789999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhcccc-c---ccCCCeeeeec-CC-cceeecCCCCCCceeec--hHHHHHHhhhhhh
Q psy7540 176 VLSRAYYHSGGNVTYLNTALRALKVFKL-P---IYKGGVQSKFL-DK-FPWYEEYPTTPAVFILN--GFIYSLFGLYDLV 247 (578)
Q Consensus 176 vL~RAY~~t~gD~kYL~aA~kal~~f~~-p---~~~GGvl~~~~-~~-~~wyeEYpt~p~~~VLN--GfiysLiGLYD~~ 247 (578)
+.+|.|++| +|++||+.|++..+++.. . .+.|-|..-.. ++ ..= ..+..+..| =+|-++..||.
T Consensus 163 laarL~~~t-~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~-----~~~~~~TYNqG~~l~a~~~Ly~-- 234 (370)
T PF03663_consen 163 LAARLYRIT-GDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTN-----INKTKWTYNQGVFLGAAAYLYN-- 234 (370)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B------TT---HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhc-CChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCc-----CCCceechHHHHHHHHHHHHHH--
Confidence 999999999 999999999999999988 2 33344433211 11 101 123333333 25667777776
Q ss_pred hhCCCc--cHHHHHHHHHHHHHH
Q psy7540 248 TLSPRS--KQKEALSLYDQGITS 268 (578)
Q Consensus 248 ~~t~d~--~~~~A~~lf~~Gi~S 268 (578)
.|+++ ..++|.++-+..+..
T Consensus 235 -~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 235 -ATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp -HH--H-HHHHHHHHHHHHHHHH
T ss_pred -hcCCccHHHHHHHHHHHHHHHH
Confidence 77543 445777777766555
No 18
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.06 E-value=0.037 Score=58.12 Aligned_cols=126 Identities=19% Similarity=0.093 Sum_probs=65.2
Q ss_pred CchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHh
Q psy7540 163 GWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFG 242 (578)
Q Consensus 163 gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiG 242 (578)
.|.++ ..+.-|.++|+.| +|++|++.|++-++.+.-...+ ++... ..-.|+++ +-
T Consensus 24 ~W~~G----~~~~gl~~~~~~t-gd~~~~~~a~~~~~~~~~~~~~---------------~~~~d---~~~~g~~~--~~ 78 (336)
T PF07470_consen 24 DWTNG----VFWYGLLEAYEYT-GDERYLDYAERWADRFIEEDGS---------------DYNLD---DHDIGFLL--LD 78 (336)
T ss_dssp SHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT---------------TTSCC---GTTHHHHH--HH
T ss_pred CcChh----hHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHhccCC---------------ccCCc---hhhhHHHH--HH
Confidence 57664 3333366999999 9999999999977777644332 11111 23456666 33
Q ss_pred hhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCC-CcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCcc
Q psy7540 243 LYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTG-SGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKI 321 (578)
Q Consensus 243 LYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g-~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~ 321 (578)
+|+ .|+|+. .++...+-..++.+..|.-..| -|....-. . ..+.+.-| .-.-.|-+.+.+|+|+.
T Consensus 79 ~y~---~t~d~~---y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~-~-----~~wiD~~~--M~~p~l~~~~~~tgd~~ 144 (336)
T PF07470_consen 79 LYE---RTGDEK---YKDAAIQAADWLLARRPRTSDGGFWHNRPYP-N-----QVWIDGMY--MNLPFLAWAGKLTGDPK 144 (336)
T ss_dssp HHH---HH-THH---HHHHHHHHHHHHHHTSCBECTGCBECTTTST-T-----EEETTHHH--HHHHHHHHHHHHHTGHH
T ss_pred HHH---HhCCHH---HHHHHHHHHHHHHHhCCCCCCCccccCCCCC-C-----ceeecccc--ccHHHHHHHHHHHCCcH
Confidence 555 888874 4444566666444444432223 23300000 0 00111112 13455777778888876
Q ss_pred ccccCc
Q psy7540 322 ISDTGV 327 (578)
Q Consensus 322 f~~~A~ 327 (578)
+.+.|.
T Consensus 145 ~~~~a~ 150 (336)
T PF07470_consen 145 YLDEAV 150 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 19
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=94.86 E-value=0.11 Score=54.61 Aligned_cols=141 Identities=23% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCCCCCCccccccccc--c--cCCCCC--CCCchhhhhhh---HHHHHHHHHHHhcCCChhHHHHHHHHhhccccc-ccC
Q psy7540 138 QDPKTGGWPNPVRRRI--T--AGIGDL--KPGWYSAMGQG---HAISVLSRAYYHSGGNVTYLNTALRALKVFKLP-IYK 207 (578)
Q Consensus 138 qd~~~G~W~~~~~~~~--~--~~~~~L--~~gW~SaMaQG---~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p-~~~ 207 (578)
|. ++|||+...+..- . .....+ +..|.|-+.-+ ..|..|+|+|+.| +|++|.+|+.|+++..... -..
T Consensus 1 Q~-~~GGW~Kn~d~~~~~~~~~~~~~~~~~~~~~~TiDN~aT~~ei~fLa~~y~~t-~d~~y~~A~~kgl~ylL~aQypn 78 (289)
T PF09492_consen 1 QR-PSGGWPKNIDYAGELSAKEQYYILKEKQHYNSTIDNDATTTEIRFLARVYQAT-KDPRYREAFLKGLDYLLKAQYPN 78 (289)
T ss_dssp ---TTSS-SSS--TTT----TT-SSS-------SCE-GGGTTHHHHHHHHHHHHHC-G-HHHHHHHHHHHHHHHHHS-TT
T ss_pred CC-CCCCCCCccccccccChhHhhhhhcccccccCcccChhHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHhhCCC
Confidence 45 8999988765431 0 000000 11233333333 5788999999999 9999999999999977755 667
Q ss_pred CCeeeeecCCcceeecCCCCCCceeec--hHHHHHHhhhhhhhhCC------CccHHHHHHHHHHHHH-HHhhhc--cCc
Q psy7540 208 GGVQSKFLDKFPWYEEYPTTPAVFILN--GFIYSLFGLYDLVTLSP------RSKQKEALSLYDQGIT-SLKRML--NMY 276 (578)
Q Consensus 208 GGvl~~~~~~~~wyeEYpt~p~~~VLN--GfiysLiGLYD~~~~t~------d~~~~~A~~lf~~Gi~-SLk~~L--p~y 276 (578)
||.--.+....- |- ...++| -++-.|.=|.|.++-.+ ++...+|.+-+++||. -|+.-+ +-=
T Consensus 79 GGWPQ~yP~~~~-Y~------~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~ 151 (289)
T PF09492_consen 79 GGWPQFYPLRGG-YH------DHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGK 151 (289)
T ss_dssp S--BSECS--SG-GG------GSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTE
T ss_pred CCCCccCCCCCC-CC------CceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 885444322111 11 223343 34444444445444333 2234578888999999 455555 444
Q ss_pred cCCCcceeccc
Q psy7540 277 DTGSGSSYDLR 287 (578)
Q Consensus 277 D~g~wS~Ydl~ 287 (578)
-+++.-+||-.
T Consensus 152 ~t~W~qQhD~~ 162 (289)
T PF09492_consen 152 LTAWCQQHDEV 162 (289)
T ss_dssp E----SEE-TT
T ss_pred CCchhhccCcc
Confidence 46677899953
No 20
>KOG2244|consensus
Probab=94.53 E-value=0.58 Score=52.93 Aligned_cols=312 Identities=18% Similarity=0.175 Sum_probs=164.6
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHhhccccc--ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhh
Q psy7540 169 GQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLP--IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDL 246 (578)
Q Consensus 169 aQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p--~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~ 246 (578)
.|||-+.++.-||++| +|+-|...|++.++.+... ..+||+-+-...+. +++=-...+ .-|-|..
T Consensus 337 DQ~QL~~aysdafklT-~de~y~~va~~I~qYl~rdlsh~~GGfysaEDADS--lp~h~~k~k----------~EGAfya 403 (786)
T KOG2244|consen 337 DQGQLANAYSDAFKLT-KDEMYSYVARDILQYLRRDLSHPEGGFYSAEDADS--LPFHGAKRK----------KEGAFYA 403 (786)
T ss_pred hHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHHHhccCCCCCcccccccCC--Ccccccccc----------cccceEE
Confidence 6999999999999999 9999999999999999874 78899866432221 111111000 0111111
Q ss_pred hhhCCCccHHHHHHHHHHHHHHHhhhccCccCCCcceecc--cccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccc
Q psy7540 247 VTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDL--RHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISD 324 (578)
Q Consensus 247 ~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl--~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~ 324 (578)
| |. +-++..|+.-++|.=|..|+ .|+++..++|+++- ..-| ..++|-.++..
T Consensus 404 W--t~---------------dEIqqll~e~~i~p~~~fdl~a~hygvk~sGnvs~s--sDPh-------gel~gkNVL~v 457 (786)
T KOG2244|consen 404 W--TS---------------DEIQQLLGENAIGPASLFDLFAEHYGVKKSGNVSSS--SDPH-------GELAGKNVLIV 457 (786)
T ss_pred e--eH---------------HHHHHHhCCCCCCcchHHHHHHHHcCCCCCCCCCCC--CCCc-------ccccCceEEEE
Confidence 1 11 12334555556776666663 67777777776543 1222 12233333322
Q ss_pred cCcccccccCCCcccChhhHHhhhhh--ccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccc
Q psy7540 325 TGVPVTTQWDPNGYYYPTQIAQFGLS--HYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHT 402 (578)
Q Consensus 325 ~A~rW~~q~~~~~~y~p~~iaqygL~--~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~ 402 (578)
... . ...-+.++|+ -|-|.|.+-..|. ..-+ -.-..|+.++.+ +--|
T Consensus 458 r~s---~---------e~taanf~lsve~~kkll~e~~e~L--~~aR----~kRPkPHLDsKi------------i~sW- 506 (786)
T KOG2244|consen 458 RNS---T---------EATAANFSLSVEKYKKLLGECREKL--FDAR----LKRPKPHLDSKI------------IVSW- 506 (786)
T ss_pred ecc---h---------HhhHhhccccHHHHHHHHHHHHHHH--HHHh----hcCCCCCccchh------------eeec-
Confidence 111 0 2233344443 3334333222210 0000 001111111110 1123
Q ss_pred cccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhccc---ccccCCCceee--c-cCCCceEeeCCCCCCceeehhHHHH
Q psy7540 403 SAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFK---LPIYKGGVQSK--F-LDKFPWYEEYPTTPAVFILNGFIYS 476 (578)
Q Consensus 403 SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~---~p~~~GGv~~~--~-~~~~~wyeEYpt~p~s~VLNGfIys 476 (578)
||..||=|++|++.+..+++|++.|...+++.. +.+.++=++.. + ...+.-=.+++-....--|.-.-|-
T Consensus 507 ----nGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFl 582 (786)
T KOG2244|consen 507 ----NGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFL 582 (786)
T ss_pred ----cchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHH
Confidence 699999999999999767799999999887654 33444322221 0 0111111223212222247888889
Q ss_pred HHHhHhhhhcCCcc-hhHHHHHHHHHHHHHHHHHhccccCCCccccccc----------ccccCCCCCCCCCChHHHHHH
Q psy7540 477 LFGLYDLVTLSPRS-KQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLR----------HISLGIAPKIARCDYHATHVN 545 (578)
Q Consensus 477 L~GLyD~~~~~~~~-~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~----------h~~~~~~p~~A~~~YH~lHi~ 545 (578)
.-||-|+++.+++. -.+.|.+|=+. ...|- +|.| +=+..-- ...-|..|.-.+ +--.
T Consensus 583 I~gLLDlYea~~~~e~LkwA~~LQdt-----qdklF-Wdgg-gYF~Se~~~~~v~vRlkeDhDGAEPs~nS-----Vsah 650 (786)
T KOG2244|consen 583 ISGLLDLYEAGGGIEWLKWAIKLQDT-----QDKLF-WDGG-GYFISEKTDEDVSVRLKEDHDGAEPSGNS-----VSAH 650 (786)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHH-----HHHhe-ecCC-ceeeeeccCCCcceeeccccCCCCCCccc-----hhhh
Confidence 99999999988653 23567655432 23332 5532 2211100 001123333333 2233
Q ss_pred HHHHHHhhcCChhhHHHHHHH
Q psy7540 546 QLLLLATIEKDKIISDTGQRW 566 (578)
Q Consensus 546 qL~~L~~it~d~~f~~~a~rW 566 (578)
-|..|+.|++.+.+.+.|.|=
T Consensus 651 NLvrL~~~~~~e~yl~ka~~l 671 (786)
T KOG2244|consen 651 NLVRLASIVAAESYLNKAHRL 671 (786)
T ss_pred hHHHHHHHhhHHHHHHHHHHH
Confidence 477899999999888888764
No 21
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=94.45 E-value=0.94 Score=47.30 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCC-hhHHHHHHHHhhccccc
Q psy7540 129 ATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGN-VTYLNTALRALKVFKLP 204 (578)
Q Consensus 129 ~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD-~kYL~aA~kal~~f~~p 204 (578)
.+++||.++|. ++|+|+... .+-|. -++.++|...+ +. +.|-++.+||++++...
T Consensus 3 ~~~~~L~~~Q~-~dG~W~~~~-----------~~~~~--------Ta~~~~al~~~-g~~~~~~~~~~ka~~~l~~~ 58 (348)
T cd02889 3 RALDFLLSLQA-PDGHWPGEY-----------SQVWD--------TALALQALLEA-GLAPEFDPALKKALEWLLKS 58 (348)
T ss_pred hHHHHHHHhcc-CCCCccccC-----------CchHH--------HHHHHHHHHHc-CCCCccCHHHHHHHHHHHhc
Confidence 58999999999 999997332 11122 23456666667 44 57888999998876654
No 22
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=94.27 E-value=3 Score=44.03 Aligned_cols=128 Identities=17% Similarity=0.105 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCceeeccCCCceEeeCCCCCCceee-------hhHHHHHHHh
Q psy7540 408 GHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFIL-------NGFIYSLFGL 480 (578)
Q Consensus 408 G~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VL-------NGfIysL~GL 480 (578)
|.+.+ |.+++..+ +++++++.++++++...-...+.|. |..-.+ ......+ =|.+.+++-+
T Consensus 169 GI~~~-L~~~~~~~-~~~~~~~~i~~~i~~~~~~~~~~g~---------w~~~~~-~~~~~~~~~wChG~~Gi~~~l~~~ 236 (343)
T cd04794 169 GILYI-LLQTPLFL-LKPSLAPLIKRSLDYLLSLQFPSGN---------FPSSLG-NRKRDRLVQWCHGAPGIVYLLAKA 236 (343)
T ss_pred HHHHH-HHhhhhhc-CCccHHHHHHHHHHHHHHhhccCCC---------CCCccC-CCCCCccccccCCCchHHHHHHHH
Confidence 44444 77888776 6999999999999876533222232 211000 0001112 2555555544
Q ss_pred HhhhhcCCcc-hhHHHHHHHHHHHHHH-HHHhccccCCCcccccccccccCCCCCCCCCChHHHHHHHHHHHHhhcCChh
Q psy7540 481 YDLVTLSPRS-KQKEALSLYDQGITSL-KRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKI 558 (578)
Q Consensus 481 yD~~~~~~~~-~~~~A~~lF~~Gl~sL-k~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~qL~~L~~it~d~~ 558 (578)
+ ++.+++ ..++|. ++.+++ +.-++. .-+.++|...| + ...|..++..|+|+.
T Consensus 237 ~---~~~~~~~~~~~~~----~~~~~~~~~g~~~------~~~~lCHG~~G---~----------~~~lL~~~~~~~~~~ 290 (343)
T cd04794 237 Y---LVFKEEQYLEAAI----KCGELIWKRGLLK------KGPGLCHGIAG---N----------AYAFLLLYRLTGDLK 290 (343)
T ss_pred H---HHhCCHHHHHHHH----HHHHHHHHhCCcc------CCCccccCccc---h----------HHHHHHHHHHhCcHH
Confidence 4 445443 223333 333322 111111 12456666532 2 456889999999999
Q ss_pred hHHHHHHHHhhhhcc
Q psy7540 559 ISDTGQRWAGYIQGK 573 (578)
Q Consensus 559 f~~~a~rW~~Y~~~~ 573 (578)
+.+.|.++..++...
T Consensus 291 ~~~~a~~~~~~~~~~ 305 (343)
T cd04794 291 YLYRACKFAEFLINY 305 (343)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887543
No 23
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=93.03 E-value=1.1 Score=50.81 Aligned_cols=164 Identities=14% Similarity=0.175 Sum_probs=103.5
Q ss_pred CCceEEEEeeecc-ccccccccCc-hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCch---hhhhhhH
Q psy7540 98 SKFKVTHIHLYGS-GSIDNLTLST-SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWY---SAMGQGH 172 (578)
Q Consensus 98 ~~~~~~~i~~~g~-g~~~n~~l~~-~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~---SaMaQG~ 172 (578)
..+.+...+-|-+ |.++-+.|+. +-++++...+||.|+.-.+ ...+.|+..-. +..+. .-.++|. +++|..-
T Consensus 149 ~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFd-TptgiP~~~vn-l~~g~-~~~~~~~~~~~~lAe~g 225 (522)
T PTZ00470 149 LGVSVFETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFN-EDTGFPASEIN-LATGR-KSYPGWAGGCSILSEVG 225 (522)
T ss_pred CeeeeeeeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-CCCCCCcceee-cccCC-CCCcccCCCccchhhhh
Confidence 3456666777777 5579999987 5679999999999999988 55566654211 22222 2244563 3344433
Q ss_pred HHHH-HHHHHHhcCCChhHHHHHHHHhhcccccccC-CCeeeeec--CCcceeecCCCCCCceeechHHHHHHhhhhh--
Q psy7540 173 AISV-LSRAYYHSGGNVTYLNTALRALKVFKLPIYK-GGVQSKFL--DKFPWYEEYPTTPAVFILNGFIYSLFGLYDL-- 246 (578)
Q Consensus 173 aiSv-L~RAY~~t~gD~kYL~aA~kal~~f~~p~~~-GGvl~~~~--~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~-- 246 (578)
.+++ |.+..++| ||++|.++|+++.+.+...... -|.+.... ....|. .+.+.+-+..-| .|||
T Consensus 226 Sl~LEF~~LS~lT-Gd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~------~~~~siGa~~DS---~YEYLl 295 (522)
T PTZ00470 226 TLQLEFNYLSEIT-GDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFC------GNHISLGALGDS---YYEYLL 295 (522)
T ss_pred hHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccC------CCceeecCCcch---hHHHHH
Confidence 4433 79999999 9999999999999988765443 35444322 234552 233334443333 2343
Q ss_pred --hhhCCCccHHHHHHHHHHHHHHHhhhccC
Q psy7540 247 --VTLSPRSKQKEALSLYDQGITSLKRMLNM 275 (578)
Q Consensus 247 --~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~ 275 (578)
+.+++.. .++..++|++.+.++++.|-.
T Consensus 296 K~~il~~~~-d~~~~~~~~~a~~~i~~~l~~ 325 (522)
T PTZ00470 296 KQWLYTNGR-EERYRRLFVESAKGIIEHLYK 325 (522)
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHHHHHhcc
Confidence 2344321 236889999999999887743
No 24
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=92.72 E-value=0.014 Score=50.84 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhccccc-cc
Q psy7540 128 YATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLP-IY 206 (578)
Q Consensus 128 ~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p-~~ 206 (578)
..+++||+++|. +||+|...++ ........++.|.... +++.+.++.+||++++... -+
T Consensus 2 ~~~~~~l~~~Q~-~dG~W~~~~~------------------~~~~~t~~~~~al~~~-~~~~~~~ai~ka~~~l~~~Q~~ 61 (109)
T PF13243_consen 2 KRAAEWLLSQQN-PDGSWGYNWG------------------SDVFVTAALILALAAA-GDAAVDEAIKKAIDWLLSHQNP 61 (109)
T ss_dssp -----------------------------------------------------------TS-SSBSSHHHHHHHHH---T
T ss_pred cccccccccccc-cccccccccc------------------cccccccccccccccc-CCCCcHHHHHHHHHHHHHhcCC
Confidence 468999999999 9999965532 1223344467788888 7889999999999998876 44
Q ss_pred CCCe
Q psy7540 207 KGGV 210 (578)
Q Consensus 207 ~GGv 210 (578)
+||.
T Consensus 62 dG~w 65 (109)
T PF13243_consen 62 DGGW 65 (109)
T ss_dssp TS--
T ss_pred CCCC
Confidence 5553
No 25
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=92.57 E-value=0.17 Score=54.58 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHHhcCCCh-----hHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCC----ceeech-HHH
Q psy7540 169 GQGHAISVLSRAYYHSGGNV-----TYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPA----VFILNG-FIY 238 (578)
Q Consensus 169 aQG~aiSvL~RAY~~t~gD~-----kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~----~~VLNG-fiy 238 (578)
-++.-.-.++|||++| +++ +||+.|++.++....--++. .| ++++|..+.++.+. .-+=|| ++.
T Consensus 89 D~aw~~la~l~aye~t-~~~~~~~~~yL~~A~~i~~~~~~~wd~~----~c-gGGi~W~~~~~~~~~~~Kna~sN~~~~~ 162 (370)
T PF03663_consen 89 DNAWWALALLRAYELT-GDQPSDNPKYLDLAKEIFDFLISGWDDT----SC-GGGIWWSIDDTNSGYDYKNAISNGPAAQ 162 (370)
T ss_dssp HHHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHHHHTB-SG----G--GS-BEEET----TEEEEEEHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhh-CCCcchHHHHHHHHHHHHHHHHHhcCCc----cC-CCCccccccccCCCCCcccccchHHHHH
Confidence 5566677899999999 999 99999999998776332211 13 22333333322211 112355 556
Q ss_pred HHHhhhhhhhhCCCc-cHHHHHHHHHHHHHHHhhhccCccCCCcceeccccc-ccCCCCCcCCCchh-HHHHHHHHHHHh
Q psy7540 239 SLFGLYDLVTLSPRS-KQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHI-SLGIAPKIARCDYH-ATHVNQLLLLAT 315 (578)
Q Consensus 239 sLiGLYD~~~~t~d~-~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~-~~~~~pn~A~~~YH-~lHi~qL~~L~~ 315 (578)
....||. +|+++ +.+.|+++++=-..+ .+ .|...+..+|--.. .-....+...+.|- .+-|.=+..||+
T Consensus 163 laarL~~---~t~~~~Yl~~A~~~~~W~~~~--~L---~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~ 234 (370)
T PF03663_consen 163 LAARLYR---ITGDQTYLDWAKKIYDWMRDS--GL---IDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYN 234 (370)
T ss_dssp HHHHHHH---HH--HHHHHHHHHHHHHHHH---HH---B--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hcCChHHHHHHHHHHHHhhcc--ee---EECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHH
Confidence 6667777 56765 345677777744332 22 36677878873211 10011233445553 455677899999
Q ss_pred hcCCc-cccccCcccccccCCCcccChhhHHhhhhhc
Q psy7540 316 IEKDK-IISDTGVPVTTQWDPNGYYYPTQIAQFGLSH 351 (578)
Q Consensus 316 it~D~-~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~ 351 (578)
+|+|+ .+++.|+ .++++++.+
T Consensus 235 ~T~~~~~yl~~A~---------------~la~~~~~~ 256 (370)
T PF03663_consen 235 ATNDEQTYLDRAE---------------KLADAAINH 256 (370)
T ss_dssp HH--H-HHHHHHH---------------HHHHHHHHH
T ss_pred hcCCccHHHHHHH---------------HHHHHHHHH
Confidence 99876 7776666 577777766
No 26
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=89.98 E-value=24 Score=35.94 Aligned_cols=279 Identities=17% Similarity=0.102 Sum_probs=139.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceee---chHHHHHHhhhhhhhhCCC
Q psy7540 176 VLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFIL---NGFIYSLFGLYDLVTLSPR 252 (578)
Q Consensus 176 vL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VL---NGfiysLiGLYD~~~~t~d 252 (578)
+|.+.|+.| ++++|.+.+.++++.......+... .+.=++ -|.+++|.-+|. .+++
T Consensus 10 ~l~~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~G~~Gi~~~l~~l~~---~~~~ 68 (343)
T cd04434 10 LLLELYRVT-PDEKYQDLAHKALEYIVKSLSSLPD-----------------TDISLFSGLAGIAYALAALSK---GLGD 68 (343)
T ss_pred HHHHHHhcc-CCccHHHHHHHHHHHHHHHHHhCCC-----------------CCeeeecchHHHHHHHHHHHH---HcCC
Confidence 458999999 9999999999999986644332210 111122 356677766666 6666
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccc
Q psy7540 253 SKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQ 332 (578)
Q Consensus 253 ~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q 332 (578)
+. ..+...+-+..+...+. .+ .....+|+-|+.. + =+..|..++..++|+.+.+.+..
T Consensus 69 ~~---~~~~~~~~~~~~~~~~~-~~-~~~~~~d~~~G~a-------G------~~~~ll~~~~~~~~~~~~~~~~~---- 126 (343)
T cd04434 69 QE---LLKELLELLLLLVELIL-ED-LKDLNYDLLSGLA-------G------LLLALLLLYKTFGEEIFLELIRK---- 126 (343)
T ss_pred HH---HHHHHHHHHHHhhhhhh-cc-cCCCCcceeechH-------H------HHHHHHHHHHhcCCcCHHHHHHH----
Confidence 53 22333333333322221 01 1234556665531 1 23446667777777777665552
Q ss_pred cCCCcccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHH
Q psy7540 333 WDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAIS 412 (578)
Q Consensus 333 ~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiS 412 (578)
++++=+.+. ...+.+ ..|... .+. . ....+|.-+.+ | -+.
T Consensus 127 -----------~~~~l~~~~----~~~~~~-----------~~~~~~---------~~~--~-~~~~g~~HG~~-G-i~~ 166 (343)
T cd04434 127 -----------ILDYLLELG----KNGDGK-----------IRWPMY---------FPE--G-RVNLGLAHGLA-G-ILL 166 (343)
T ss_pred -----------HHHHHHHhh----hhccCC-----------Cceeee---------ccC--C-ccccchhhhhH-H-HHH
Confidence 222222211 101000 012200 000 0 00112322222 2 234
Q ss_pred HHHHHHhhcCCChhHHHHHHHhhhccccc-ccCCCceeeccCCCceEeeCCCCCCceee-------hhHHHHHHHhHhhh
Q psy7540 413 VLSRAYYHSGGNVTYLNTALRALKVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPAVFIL-------NGFIYSLFGLYDLV 484 (578)
Q Consensus 413 vl~RAY~~t~gd~~YL~aA~kal~~f~~p-~~~GGv~~~~~~~~~wyeEYpt~p~s~VL-------NGfIysL~GLyD~~ 484 (578)
.|.+++..+ +++.+.++++.+++....- ..++| .|.... ..++.-.. -|.+.+++-++
T Consensus 167 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~wChG~~Gi~~~l~~~~--- 232 (343)
T cd04434 167 ALLLLYKKT-VDKSLEALIKALLKYERRLQDDSGG---------FWWPSR-SNGGNRFLVAWCHGAPGILLALLLAY--- 232 (343)
T ss_pred HHHHHHHhc-CChhHHHHHHHHHHHHHHccCCCCC---------CCCCCC-CCCCccccceecCCChhHHHHHHHHH---
Confidence 777888877 5777777777776643321 12222 222101 11111122 34455554444
Q ss_pred hcCCcc-hhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCCCCCCCCChHHHHHHHHHHHHhhcCChhhHHHH
Q psy7540 485 TLSPRS-KQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTG 563 (578)
Q Consensus 485 ~~~~~~-~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~qL~~L~~it~d~~f~~~a 563 (578)
++++++ ..+.|.+..+..+...+.. +..+.++|...| -+..|..++..|+|+.+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lChG~~G-------------~~~~ll~l~~~~~~~~~~~~a 291 (343)
T cd04434 233 KALGDDKYDEAAEKALELAWKRGLLE--------LKNPGLCHGIAG-------------NLLILLLLYKLTGDLKFLARA 291 (343)
T ss_pred HHcCcHHHHHHHHHHHHHHHHhhhcc--------CCCCCcCcCccc-------------hHHHHHHHHHHhCCHHHHHHH
Confidence 445432 2344554444443332221 344556666532 234588889999999999999
Q ss_pred HHHHhhhhc
Q psy7540 564 QRWAGYIQG 572 (578)
Q Consensus 564 ~rW~~Y~~~ 572 (578)
++|...+..
T Consensus 292 ~~~~~~~~~ 300 (343)
T cd04434 292 LALALLLIS 300 (343)
T ss_pred HHHHHHHHH
Confidence 999887653
No 27
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=89.96 E-value=0.94 Score=47.65 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHh--cCCChhHHHHHHHHh
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYH--SGGNVTYLNTALRAL 198 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~--t~gD~kYL~aA~kal 198 (578)
++..+.|...++.|.+.|+ ++|.|...++. ++ +.++..+=|-+...+.|.++.+. . .+++|+++|+|++
T Consensus 211 ~~~~~~~~~~~~~l~~~q~-~~G~w~~~~~~------~~-~~~~~etSatA~~a~~l~~gi~~g~~-d~~~y~~~a~~a~ 281 (336)
T PF07470_consen 211 DELLEIAKKLADALARYQD-EDGLWYQDLDD------PD-PGNYRETSATAMFAYGLLRGIRLGLL-DPEEYRPAAEKAL 281 (336)
T ss_dssp HHHHHHHHHHHHHHHTTST-TTSBEBSBTTT------TT-TTS-BEHHHHHHHHHHHHHHHHTTSS-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCCcceecCC------CC-CCCcccHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Confidence 5678889999999999999 99999877644 22 33444444555666667665433 3 4789999999999
Q ss_pred hccccc-ccCCCe
Q psy7540 199 KVFKLP-IYKGGV 210 (578)
Q Consensus 199 ~~f~~p-~~~GGv 210 (578)
+..... +.+.|.
T Consensus 282 ~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 282 EALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHCEB-TTSS
T ss_pred HHHHhCccCCCCC
Confidence 999988 777775
No 28
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=88.53 E-value=4.4 Score=41.36 Aligned_cols=175 Identities=14% Similarity=0.052 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhH--HHHHHHHHHHhcCCChhHHHHHHHH
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGH--AISVLSRAYYHSGGNVTYLNTALRA 197 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~--aiSvL~RAY~~t~gD~kYL~aA~ka 197 (578)
++...+....++++|++.+.+....|... ..... ..... ++|-|. -+.+|.++++.+ +++.+.++++.+
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~--~~~~~----g~~HG~~Gi~~~l~~~~~~~-~~~~~~~~~~~~ 187 (343)
T cd04434 117 EEIFLELIRKILDYLLELGKNGDGKIRWP--MYFPE--GRVNL----GLAHGLAGILLALLLLYKKT-VDKSLEALIKAL 187 (343)
T ss_pred CcCHHHHHHHHHHHHHHhhhhccCCCcee--eeccC--Ccccc----chhhhhHHHHHHHHHHHHhc-CChhHHHHHHHH
Confidence 46788999999999999987333332211 00001 11122 344443 356778999999 999888888888
Q ss_pred hhccccc-ccCCCeeeeecCCcceeecCCCCCC-ceeechHHHHHHhhhhhhhhCCCcc-HHHHHHHHHHHHHHHhhhcc
Q psy7540 198 LKVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPA-VFILNGFIYSLFGLYDLVTLSPRSK-QKEALSLYDQGITSLKRMLN 274 (578)
Q Consensus 198 l~~f~~p-~~~GGvl~~~~~~~~wyeEYpt~p~-~~VLNGfiysLiGLYD~~~~t~d~~-~~~A~~lf~~Gi~SLk~~Lp 274 (578)
++....- .++++....... ..+-+..+. -|=.-|.+.+++-++. .++++. .+.+.+..+..+...+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~wChG~~Gi~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-- 258 (343)
T cd04434 188 LKYERRLQDDSGGFWWPSRS----NGGNRFLVAWCHGAPGILLALLLAYK---ALGDDKYDEAAEKALELAWKRGLLE-- 258 (343)
T ss_pred HHHHHHccCCCCCCCCCCCC----CCCccccceecCCChhHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHhhhcc--
Confidence 7754332 223332110000 000000000 1111355566665555 676543 234555555444443221
Q ss_pred CccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCccccc
Q psy7540 275 MYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTT 331 (578)
Q Consensus 275 ~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~ 331 (578)
+..+.+-|+..| -...|..++..|+|+.+++.|+++..
T Consensus 259 ------~~~~~lChG~~G-------------~~~~ll~l~~~~~~~~~~~~a~~~~~ 296 (343)
T cd04434 259 ------LKNPGLCHGIAG-------------NLLILLLLYKLTGDLKFLARALALAL 296 (343)
T ss_pred ------CCCCCcCcCccc-------------hHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334456566432 24458889999999999988875543
No 29
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=88.04 E-value=1.1 Score=47.40 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCccccccccc-ccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCCh---------h
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRI-TAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNV---------T 189 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~-~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~---------k 189 (578)
++.+++.|..+.|+|++-|= ++||||-.|..+- ..+..++. =.|| ...|.+|.-+++.. ++- +
T Consensus 57 d~~y~~A~~kgl~ylL~aQy-pnGGWPQ~yP~~~~Y~~~ITfN---Ddam--~~vl~lL~~v~~~~-~~~~~v~~~~~~r 129 (289)
T PF09492_consen 57 DPRYREAFLKGLDYLLKAQY-PNGGWPQFYPLRGGYHDHITFN---DDAM--VNVLELLRDVAEGK-GDFAFVDESLRAR 129 (289)
T ss_dssp -HHHHHHHHHHHHHHHHHS--TTS--BSECS--SGGGGSEE-G---GGHH--HHHHHHHHHHHCT--TTSTTS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhC-CCCCCCccCCCCCCCCCceEEc---cHHH--HHHHHHHHHHHhhc-CCccccCHHHHHH
Confidence 47899999999999999999 8999987652210 01111112 1345 35788899999999 887 9
Q ss_pred HHHHHHHHhhccccc-ccCCCeeeee
Q psy7540 190 YLNTALRALKVFKLP-IYKGGVQSKF 214 (578)
Q Consensus 190 YL~aA~kal~~f~~p-~~~GGvl~~~ 214 (578)
+.+|..|+++.+..- +..+|.+..+
T Consensus 130 ~~~A~~kgi~ciL~tQi~~~g~~t~W 155 (289)
T PF09492_consen 130 ARAAVDKGIDCILKTQIRQNGKLTAW 155 (289)
T ss_dssp HHHHHHHHHHHHHHHS-EETTEE---
T ss_pred HHHHHHHHHHHHHHHHcccCCCCCch
Confidence 999999999988877 7778887654
No 30
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.49 E-value=1.4 Score=49.58 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhcccc-cccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCc
Q psy7540 175 SVLSRAYYHSGGNVTYLNTALRALKVFKL-PIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRS 253 (578)
Q Consensus 175 SvL~RAY~~t~gD~kYL~aA~kal~~f~~-p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~ 253 (578)
-.|++.|.+| ||++||+.|++-...=-+ |..+||- ++..--=|-+||-.+|+-|+++.++|.
T Consensus 185 lAl~~Ly~~T-g~~rYL~LA~~Fi~~rg~~P~~~rg~----------------e~~~gHAvr~iyl~~G~A~l~~~~gDd 247 (589)
T COG3533 185 LALAELYRLT-GDQRYLDLARRFIHQRGVEPLAQRGD----------------ELEGGHAVRQIYLYIGAADLAEETGDD 247 (589)
T ss_pred HHHHHHHHHh-cChHHHHHHHHHHHHhccChhhcCch----------------hhhhhhHHHHHHHhhhHHHHHHHhCCH
Confidence 4589999999 999999999987654332 3444442 111122367899999999999999998
Q ss_pred cHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCC-CCCcCCCchh--HHHHHHH---HHHHhhcCCccccccCc
Q psy7540 254 KQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGI-APKIARCDYH--ATHVNQL---LLLATIEKDKIISDTGV 327 (578)
Q Consensus 254 ~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~-~pn~A~~~YH--~lHi~qL---~~L~~it~D~~f~~~A~ 327 (578)
..+.|.+-|-+-+.+= -+|-+|+-+ -+-+||+... -||.. -|= +--+++| .+|-...+|..+.+..+
T Consensus 248 s~r~~~~~lW~~~t~k----~~YitGG~g-~~~E~F~~~ydlpn~~--~yAEtCas~~l~~~a~Rml~~~~d~~yaDvmE 320 (589)
T COG3533 248 SLRQAAEFLWQNVTTR----QSYITGGNG-SSNEHFGPDYDLPNRT--AYAETCASYNLLKLARRMLGWGPDSQYADVME 320 (589)
T ss_pred HHHHHHHHHHHHhhhh----heEEecccC-CccccCCccccCcccc--hHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 7777777777777662 136666543 3445554322 13332 232 2344554 45777788888887766
Q ss_pred c
Q psy7540 328 P 328 (578)
Q Consensus 328 r 328 (578)
|
T Consensus 321 r 321 (589)
T COG3533 321 R 321 (589)
T ss_pred H
Confidence 3
No 31
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=87.24 E-value=3.6 Score=44.01 Aligned_cols=190 Identities=12% Similarity=-0.053 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHHHHHhcCC-CCCCCcccccccccccCCCCCCC-CchhhhhhhHH--HHHHHHHHHhcCCChhHHHHHH
Q psy7540 120 TSDHMAQFYATAEWLVNHQD-PKTGGWPNPVRRRITAGIGDLKP-GWYSAMGQGHA--ISVLSRAYYHSGGNVTYLNTAL 195 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd-~~~G~W~~~~~~~~~~~~~~L~~-gW~SaMaQG~a--iSvL~RAY~~t~gD~kYL~aA~ 195 (578)
.++....+.+.++-|++... ...+.|+......- ......+. ...-+||=|.+ +++|.++|+.+-+++.++++++
T Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~ 199 (382)
T cd04793 121 DSELLREILDYLVYLTEPLNQDITLYIWSENQPSE-TESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQ 199 (382)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCc-cccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHH
Confidence 35667889999999988753 12335654421110 00011111 11235777765 6788999987757889999999
Q ss_pred HHhhccccc---ccCCCeeeeecCCcceeecCC---CCCCceeechHHHHH----HhhhhhhhhCCCccH-HHHHHHHHH
Q psy7540 196 RALKVFKLP---IYKGGVQSKFLDKFPWYEEYP---TTPAVFILNGFIYSL----FGLYDLVTLSPRSKQ-KEALSLYDQ 264 (578)
Q Consensus 196 kal~~f~~p---~~~GGvl~~~~~~~~wyeEYp---t~p~~~VLNGfiysL----iGLYD~~~~t~d~~~-~~A~~lf~~ 264 (578)
++++.+... ..+| .... ...+..+.. ..++.....++-+.. +.|+...+.++|+.. +.|.+..+.
T Consensus 200 ~~l~~~~~~~~~~~~~-~w~~---~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~ 275 (382)
T cd04793 200 KIIAWLDRWRLKNRKG-PWWP---GLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKA 275 (382)
T ss_pred HHHHHHHHHHHhCCCC-CCCc---ccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 997765432 2222 1111 000100000 011111122333333 333444556776532 234444333
Q ss_pred HHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCccccccc
Q psy7540 265 GITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQW 333 (578)
Q Consensus 265 Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~ 333 (578)
.+...+. .+.+....+-|+.. -....|..+++.|+|+.|++.|++|....
T Consensus 276 ~~~~~~~------~~~~~~~~lChG~~-------------G~~~~l~~~~~~~~~~~~~~~a~~~~~~~ 325 (382)
T cd04793 276 ALKDKKQ------LSKLISPTLCHGLA-------------GLLFIFYLLYKDTNTNEFKSALEYLLNQI 325 (382)
T ss_pred HHhChhh------hccCCCCCcCccHH-------------HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2221111 11123334555532 23466889999999999999988665543
No 32
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=85.04 E-value=8 Score=39.81 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhh
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALK 199 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~ 199 (578)
++++++.+..+++++.+...++.++|... + ++ ....++|-++.+ |.+ -+|.+++++| +|++|++.|+++++
T Consensus 157 d~~~l~~A~~~~~~~~~~~~~~~~g~~~~--~---~~-~~~~~~wchG~a-Gi~-~~l~~l~~~~-~d~~~~~~a~~~~~ 227 (321)
T cd04791 157 DSRYLELAEEALDKELARAVVDDGGLLQV--D---EG-ARLLPYLCSGSA-GLG-LLMLRLEAIT-GDKRWRDEADGIAH 227 (321)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCCceEc--C---CC-CccCcccCCCcH-HHH-HHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 47889999999999998886466777431 1 11 223556666433 333 3457899999 99999999999988
Q ss_pred cccc
Q psy7540 200 VFKL 203 (578)
Q Consensus 200 ~f~~ 203 (578)
....
T Consensus 228 ~~~~ 231 (321)
T cd04791 228 AALS 231 (321)
T ss_pred HHhh
Confidence 7763
No 33
>KOG2787|consensus
Probab=84.02 E-value=3 Score=44.85 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=106.2
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhcc---cCCceEEEEeeecc--cc--cccccc------CchHHHHHHHHHHHHHHh
Q psy7540 70 QTLTRDLLIDVQKGVLLQEKKRKIKLV---KSKFKVTHIHLYGS--GS--IDNLTL------STSDHMAQFYATAEWLVN 136 (578)
Q Consensus 70 ~~~trdl~~d~~k~~~~~~~~~~~~~~---~~~~~~~~i~~~g~--g~--~~n~~l------~~~~~~~~F~~aAdWLl~ 136 (578)
.+|+.|.+.-+...+..+-+--.+|.. +-.++-..--|.|- |. |=++++ +.+...+-.+-..|++++
T Consensus 177 ~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~ 256 (403)
T KOG2787|consen 177 ETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQ 256 (403)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHH
Confidence 478889999988887644433333332 22244444555543 22 223333 345568888999999999
Q ss_pred cCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeee----
Q psy7540 137 HQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQS---- 212 (578)
Q Consensus 137 ~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~---- 212 (578)
|+. ++|..|.....+ .+.=.-|--+ |-| .+-+|..||+++ +++|||++|.++.+--= +-|.+.
T Consensus 257 ~rf-psGNyP~s~~~~-----~drLVhWcHG-ApG-v~~~L~kAy~VF-~Eekyl~aa~ecadvVW----~rGlLkkg~G 323 (403)
T KOG2787|consen 257 NRF-PSGNYPSSEGNK-----RDRLVHWCHG-APG-VAYTLAKAYQVF-KEEKYLEAAMECADVVW----KRGLLKKGVG 323 (403)
T ss_pred ccC-CCCCCCcccCCC-----cceeeeeccC-Cch-HHHHHHHHHHHh-hHHHHHHHHHHHHHHHH----HhhhhhcCCc
Confidence 999 899998775332 2334446432 222 456899999999 99999999999887321 112222
Q ss_pred eecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH-H----HHHHHHHHHHHHhhhcc
Q psy7540 213 KFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK-E----ALSLYDQGITSLKRMLN 274 (578)
Q Consensus 213 ~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~-~----A~~lf~~Gi~SLk~~Lp 274 (578)
.|- =.-|-=|+.+-||. +|+|..+- . |..|.+.|+ +...+.|
T Consensus 324 ich----------------GvaGNaYvFLsLyR---LT~d~kYlyRA~kFae~lld~~~-~~g~r~p 370 (403)
T KOG2787|consen 324 ICH----------------GVAGNAYVFLSLYR---LTGDMKYLYRAKKFAEWLLDYGF-SHGCRTP 370 (403)
T ss_pred ccc----------------cccCchhhhHhHHH---HcCcHHHHHHHHHHHHHHHhhhh-hccCCCC
Confidence 221 12233477888888 88887542 2 445566665 4455555
No 34
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=83.16 E-value=11 Score=39.34 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhcCC-------------CCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCC-
Q psy7540 121 SDHMAQFYATAEWLVNHQD-------------PKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGG- 186 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd-------------~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~g- 186 (578)
++..+...++.+||++.|. .++|+|++.... .+|.....-+.++-+|.++...+ +
T Consensus 42 ~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~----------~~~~~~~~Ta~~l~al~~~~~~~-~~ 110 (348)
T cd02889 42 PEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTAN----------QGYPDSDDTAEALKALLRLQKKP-PD 110 (348)
T ss_pred CccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcC----------CCCCCCCChHHHHHHHHHhhccC-cc
Confidence 4677888899999999992 278888744211 12334456688888898888876 4
Q ss_pred -ChhHHHHHHHHhhccccc-ccCCCeee
Q psy7540 187 -NVTYLNTALRALKVFKLP-IYKGGVQS 212 (578)
Q Consensus 187 -D~kYL~aA~kal~~f~~p-~~~GGvl~ 212 (578)
++.+.++..++++++... .+.||+..
T Consensus 111 ~~~~~~~~i~~a~~~L~~~Q~~dG~f~~ 138 (348)
T cd02889 111 GKKVSRERLYDAVDWLLSMQNSNGGFAA 138 (348)
T ss_pred cchhhHHHHHHHHHHHHHhccCCCCEee
Confidence 366788888888877765 55677643
No 35
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=82.37 E-value=10 Score=44.92 Aligned_cols=164 Identities=17% Similarity=0.235 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhH--HHHHHHHHHHhcCCChhHHHHHHHH
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGH--AISVLSRAYYHSGGNVTYLNTALRA 197 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~--aiSvL~RAY~~t~gD~kYL~aA~ka 197 (578)
.++..+....+++.|++++. .+..|..+- . .....|| |-|. -+.+|+++|+.| +|++|+++|.++
T Consensus 605 ~~~~l~~a~~~~~~l~~~~~-~~~~~~~~~-----~--~~~~~G~----aHG~sGi~~aL~~l~~~~-~d~~~~~~a~~~ 671 (825)
T cd04792 605 SERFLDLALKCGDHLLENAS-NEDGGIGPA-----E--QPNLTGF----AHGASGIAWALLRLYKVT-GDSRYLKLAHKA 671 (825)
T ss_pred ChHHHHHHHHHHHHHHHhhh-hccCCcccc-----c--ccccccc----cccHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 46788889999999998876 433332211 1 1123333 3343 345789999999 999999999999
Q ss_pred hhcccccccCCCeeeeecCCcceeecCCCCCCceeec---hHHHHHHhhhhhhhh--CCCccHHHHHHHHHHHHHHHhhh
Q psy7540 198 LKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILN---GFIYSLFGLYDLVTL--SPRSKQKEALSLYDQGITSLKRM 272 (578)
Q Consensus 198 l~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLN---GfiysLiGLYD~~~~--t~d~~~~~A~~lf~~Gi~SLk~~ 272 (578)
++.......++ ...|..+=....+..--+ |.+.+++-++. + .+++. -.+..++.+.++...
T Consensus 672 l~~~~~~~~~~--------~~~w~~~~~~~~~~~WChG~~GI~lal~~~~~---~~~~~d~~---~~~~i~~~~~~~~~~ 737 (825)
T cd04792 672 LKYERRLFSEE--------GWNWPRKDGNSFSAAWCHGAPGILLARLELLK---FNDLDDEE---LKEEIEIALKTTLKE 737 (825)
T ss_pred HHHHHHhcCHh--------hcCCCCcCcCCCCCcccCCcHHHHHHHHHHHh---cCccchHH---HHHHHHHHHHHHHHh
Confidence 98433221111 112321100111111122 34444444444 5 33332 222334444443321
Q ss_pred ccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCccc
Q psy7540 273 LNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPV 329 (578)
Q Consensus 273 Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW 329 (578)
+.+....+=|+..| + +..|..++..++|+.+++.|+++
T Consensus 738 ------~~~~~~slCHG~~G---i----------l~~ll~~~~~~~~~~~~~~a~~~ 775 (825)
T cd04792 738 ------GFGNNHSLCHGDLG---N----------LEILLYAAKAFGDEKLQELANSL 775 (825)
T ss_pred ------cCCCCCeecCCCcc---h----------HHHHHHHHHhcCCHHHHHHHHHH
Confidence 13333456666432 1 34577788999999888877743
No 36
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=82.10 E-value=11 Score=43.84 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCCCccccccccc--ccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCC--ChhHHHHHHH
Q psy7540 122 DHMAQFYATAEWLVNHQD-PKTGGWPNPVRRRI--TAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGG--NVTYLNTALR 196 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd-~~~G~W~~~~~~~~--~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~g--D~kYL~aA~k 196 (578)
+..+...+|.+||++.|- ...|.|....++.- +.++.....+|-.+=.=+.++..|.++.... + ++.+.++.++
T Consensus 326 ~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~-~~~~~~~~~~i~~ 404 (634)
T cd02892 326 EFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELP-PFGEKVSRERLYD 404 (634)
T ss_pred cchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccC-CcchhhHHHHHHH
Confidence 567788899999999992 25555544432210 1112222222222224467777777776664 3 5678889999
Q ss_pred Hhhccccc-ccCCCeeeeec-CCcceeecCC---------CCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHH
Q psy7540 197 ALKVFKLP-IYKGGVQSKFL-DKFPWYEEYP---------TTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQG 265 (578)
Q Consensus 197 al~~f~~p-~~~GGvl~~~~-~~~~wyeEYp---------t~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~G 265 (578)
|+++..-- ..+||+..... +...|++.+. ..++.--+-+ .+|.+|-.+....++.+ .+..+.-+++
T Consensus 405 Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta--~~l~aL~~~~~~~~~~r-~~i~~~i~rA 481 (634)
T cd02892 405 AVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTG--SVLEALGLFGKLYPGHR-REIDPAIRRA 481 (634)
T ss_pred HHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHH--HHHHHHHHhcccCcchH-HHHHHHHHHH
Confidence 99988754 66788754221 2245544321 0111111222 45666655433333211 1233446677
Q ss_pred HHHHhhhccCccCCCc
Q psy7540 266 ITSLKRMLNMYDTGSG 281 (578)
Q Consensus 266 i~SLk~~Lp~yD~g~w 281 (578)
+.-|+..-.. .|+|
T Consensus 482 v~~L~~~Q~~--DGsW 495 (634)
T cd02892 482 VKYLLREQEP--DGSW 495 (634)
T ss_pred HHHHHHccCC--CCCc
Confidence 7777765442 3555
No 37
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=81.74 E-value=4.8 Score=44.76 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=91.1
Q ss_pred Eeeecc-ccccccccC--c-hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCch---hhhh-hhHHHHH
Q psy7540 105 IHLYGS-GSIDNLTLS--T-SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWY---SAMG-QGHAISV 176 (578)
Q Consensus 105 i~~~g~-g~~~n~~l~--~-~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~---SaMa-QG~aiSv 176 (578)
.+-|.+ |.++-+.|+ . +..+++....||.|+.-.+ ..-+.|++.-. +..+ ..++|- +++| .|-.+-=
T Consensus 78 t~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~-t~~g~P~~~~n-~~~~---~~~~~~~~~~~la~~gs~~lE 152 (452)
T PF01532_consen 78 TTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFD-TPTGIPYPRVN-LRTG---GKNRWPGGESSLAEAGSLQLE 152 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS-SSSS---SEEE-TTTC---EEETTCCGEEEHHHHCSSHHH
T ss_pred hhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhcc-CCCccccceee-eccc---CCCCCCCCcccccccccceec
Confidence 334455 567888888 5 5679999999999999988 44444544211 1111 111232 2333 3444445
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcccccc---cCCCeeeee--cCCcceeecCCCCCCceeechHHHHHHhhhhh----h
Q psy7540 177 LSRAYYHSGGNVTYLNTALRALKVFKLPI---YKGGVQSKF--LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDL----V 247 (578)
Q Consensus 177 L~RAY~~t~gD~kYL~aA~kal~~f~~p~---~~GGvl~~~--~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~----~ 247 (578)
|.|..++| ||++|.++|.++.+.+.... ...|..... .....|.. ..+.+-|..=| .|+| +
T Consensus 153 f~~LS~lT-gd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~------~~~~~Ga~~DS---~YEYLlK~~ 222 (452)
T PF01532_consen 153 FTRLSQLT-GDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTS------SSISLGAGGDS---FYEYLLKMY 222 (452)
T ss_dssp HHHHHHHH-S-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSS------TEE-SSTTTHH---HHHHHHHHH
T ss_pred hhHHHHHh-hccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccc------cccccCCCcch---HHHhhhhhh
Confidence 79999999 99999999999999888732 244444322 23345543 23333333333 2333 2
Q ss_pred hhCCCccHHHHHHHHHHHHHHHhhhccC
Q psy7540 248 TLSPRSKQKEALSLYDQGITSLKRMLNM 275 (578)
Q Consensus 248 ~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~ 275 (578)
.+++.. ..+..++|++.+.++++.|-.
T Consensus 223 lL~g~~-d~~~~~~~~~a~~~i~~~Ll~ 249 (452)
T PF01532_consen 223 LLLGGT-DEQYRDMYDEAVDAIKKHLLF 249 (452)
T ss_dssp HHTTTT-THHHHHHHHHHHHHHHHHTEE
T ss_pred hhcCcc-chHHHHHHHHHHHHHHHHhhc
Confidence 255521 237899999999999988643
No 38
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=80.89 E-value=2.2 Score=45.98 Aligned_cols=118 Identities=20% Similarity=0.174 Sum_probs=68.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH
Q psy7540 177 LSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK 256 (578)
Q Consensus 177 L~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~ 256 (578)
+.|||+.| +|++||+-.+. +|.--..+|| ++++ .--.+.+|++ |..+++-|+|+.+.
T Consensus 45 v~~~~eAT-~d~~yl~~l~~---~~d~~i~~~g-----------~~~~---~id~i~~g~~-----L~~L~e~T~~~~Yl 101 (357)
T COG4225 45 VARAYEAT-GDAEYLDYLKT---WFDEQIDEGG-----------LPPR---NIDHIAAGLT-----LLPLYEQTGDPRYL 101 (357)
T ss_pred HHHHHHHc-CcHHHHHHHHH---HHHhhhccCC-----------CCcc---chhhhccCce-----eeehhhhhCCHHHH
Confidence 99999999 99999999887 6666678888 1222 2224455544 34455589998776
Q ss_pred HHHHHHHHHHHHHhhhccCccCC-Cc------------ceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCcc
Q psy7540 257 EALSLYDQGITSLKRMLNMYDTG-SG------------SSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKI 321 (578)
Q Consensus 257 ~A~~lf~~Gi~SLk~~Lp~yD~g-~w------------S~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~ 321 (578)
+|..=.. +..-..|.++.| .| +.|.--.+.....--.-++.|-.=-+.|+......+.||.
T Consensus 102 ~~a~~~a----~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~ 175 (357)
T COG4225 102 EAAIKLA----SWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPE 175 (357)
T ss_pred HHHHHHH----HHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCC
Confidence 6543333 222334577766 23 2332111111111112345566666666666666667666
No 39
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=76.71 E-value=3.9 Score=35.43 Aligned_cols=28 Identities=25% Similarity=0.627 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccc
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNP 148 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~ 148 (578)
.++..+....+++||+++|. ++|+|...
T Consensus 41 ~~~~~~ai~ka~~~l~~~Q~-~dG~w~~~ 68 (109)
T PF13243_consen 41 DAAVDEAIKKAIDWLLSHQN-PDGGWGYS 68 (109)
T ss_dssp TS-SSBSSHHHHHHHHH----TTS--S-T
T ss_pred CCCcHHHHHHHHHHHHHhcC-CCCCCCCc
Confidence 34677788999999999999 99999743
No 40
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=75.46 E-value=15 Score=39.34 Aligned_cols=145 Identities=14% Similarity=0.019 Sum_probs=75.3
Q ss_pred ccchhhH--HHHHHHHHhhcCCChhHHHHHHHhhhcc---cccccCCCceeeccCCCceEeeCC---CCCCceeehhHHH
Q psy7540 404 AMGQGHA--ISVLSRAYYHSGGNVTYLNTALRALKVF---KLPIYKGGVQSKFLDKFPWYEEYP---TTPAVFILNGFIY 475 (578)
Q Consensus 404 aMaQG~a--iSvl~RAY~~t~gd~~YL~aA~kal~~f---~~p~~~GGv~~~~~~~~~wyeEYp---t~p~s~VLNGfIy 475 (578)
+||=|.+ +++|+++|..+-+++.++++++++++.+ .++..+|.... ...+.+|.. ..++.....++-+
T Consensus 169 G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~----~~~~~~~~~~~~~~~~~~~~~~wCh 244 (382)
T cd04793 169 GLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWP----GLITNREQIGGRPNNPNPFRDAWCY 244 (382)
T ss_pred cchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCc----ccccHHHHhccccccCCCCCCCCCC
Confidence 4554444 3789999986624899999999986543 33333321110 000101100 0111222345555
Q ss_pred HHHHh----HhhhhcCCcc-hhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCCCCCCCCChHHHHHHHHHHH
Q psy7540 476 SLFGL----YDLVTLSPRS-KQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLL 550 (578)
Q Consensus 476 sL~GL----yD~~~~~~~~-~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~qL~~L 550 (578)
...|+ +...++++++ ..+.|.+..+..+...+.. +.+....++|... -.+..|..+
T Consensus 245 G~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~lChG~~-------------G~~~~l~~~ 305 (382)
T cd04793 245 GTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQL------SKLISPTLCHGLA-------------GLLFIFYLL 305 (382)
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh------ccCCCCCcCccHH-------------HHHHHHHHH
Confidence 55444 3444445443 2234544433322211111 1123333444432 234568899
Q ss_pred HhhcCChhhHHHHHHHHhhhh
Q psy7540 551 ATIEKDKIISDTGQRWAGYIQ 571 (578)
Q Consensus 551 ~~it~d~~f~~~a~rW~~Y~~ 571 (578)
+..|+|+.|++.+++|...+-
T Consensus 306 ~~~~~~~~~~~~a~~~~~~~l 326 (382)
T cd04793 306 YKDTNTNEFKSALEYLLNQII 326 (382)
T ss_pred HHHhCCcHHHHHHHHHHHHHH
Confidence 999999999999999987663
No 41
>PLN03012 Camelliol C synthase
Probab=72.78 E-value=1.9e+02 Score=34.95 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHhcCCC--CCCCccccccccc--ccCCCCCCCCchhhhhhhHHHHHH-HHH---HHhcCCChhHHH
Q psy7540 121 SDHMAQFYATAEWLVNHQDP--KTGGWPNPVRRRI--TAGIGDLKPGWYSAMGQGHAISVL-SRA---YYHSGGNVTYLN 192 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~--~~G~W~~~~~~~~--~~~~~~L~~gW~SaMaQG~aiSvL-~RA---Y~~t~gD~kYL~ 192 (578)
+++.....+|.+||.+.|-. ..|.|...+++.- +..|.+-..+|-.+=+-+.++... ..+ -.+. +++..-+
T Consensus 435 ~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~-~~~~~~~ 513 (759)
T PLN03012 435 NEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIV-GPKMDPE 513 (759)
T ss_pred ccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccc-cccccHH
Confidence 46777899999999999962 2366666654421 333455566777766777776432 222 1223 3555667
Q ss_pred HHHHHhhccccc-ccCCCeeeee-cCCcceeecCC
Q psy7540 193 TALRALKVFKLP-IYKGGVQSKF-LDKFPWYEEYP 225 (578)
Q Consensus 193 aA~kal~~f~~p-~~~GGvl~~~-~~~~~wyeEYp 225 (578)
+-.+|+++..-- ..+||+-+-. .++..|.|.-|
T Consensus 514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~ln 548 (759)
T PLN03012 514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLN 548 (759)
T ss_pred HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcC
Confidence 888888876655 7778874432 23456766543
No 42
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=71.58 E-value=18 Score=42.10 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccC----------CCCCCCCchhhhhhhHHHHHHHHHHHhcCC---ChhH
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITAG----------IGDLKPGWYSAMGQGHAISVLSRAYYHSGG---NVTY 190 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~----------~~~L~~gW~SaMaQG~aiSvL~RAY~~t~g---D~kY 190 (578)
.++..+|+|||++.|. ++|||....... +.. +.+.....-+.-+-+.+|..|...-... . .++.
T Consensus 399 ~~~l~~av~~Ll~~Qn-~dGGw~~y~~~~-~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~-~~~~~~~i 475 (634)
T TIGR03463 399 QARLQDAVEFILSRQN-EDGGFGTYERQR-GPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHH-PHVPDGRI 475 (634)
T ss_pred HHHHHHHHHHHHHhcC-CCCCEeccCCCC-cHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcC-cchhhhHH
Confidence 4788999999999999 999998432111 000 0111112224445678888887765444 3 2445
Q ss_pred HHHHHHHhhccccc-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHH
Q psy7540 191 LNTALRALKVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSL 269 (578)
Q Consensus 191 L~aA~kal~~f~~p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SL 269 (578)
-.+..+|+++.... .++||.-. .|-..|. -|-.+++.||...-.-..+ ...++++.-|
T Consensus 476 ~~ai~rav~~L~~~Q~~dGsW~g------~Wg~~~~--------Y~T~~al~aL~~~G~~~~~-------~~i~rA~~~L 534 (634)
T TIGR03463 476 TRAISRGVRFLRSRQREDGSFPG------SWGVCFT--------YGTFHGVMGLRAAGASPDD-------MALQRAAAWL 534 (634)
T ss_pred HHHHHHHHHHHHHhcCCCCCccc------cCCCCCc--------HHHHHHHHHHHHcCCCcCc-------HHHHHHHHHH
Confidence 66778888877655 55666522 2321111 1567899999763211111 2367777777
Q ss_pred hhhccCccCCCc
Q psy7540 270 KRMLNMYDTGSG 281 (578)
Q Consensus 270 k~~Lp~yD~g~w 281 (578)
+..- -..|+|
T Consensus 535 l~~Q--~~DGgW 544 (634)
T TIGR03463 535 RSYQ--RADGGW 544 (634)
T ss_pred HHcc--CCCCCc
Confidence 6532 234555
No 43
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=68.64 E-value=34 Score=39.88 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccc-ccccc------ccc--CCCC--CCCCchhhhhhhHHHHHHHHHHHhcCCChhHH
Q psy7540 123 HMAQFYATAEWLVNHQDPKTGGWPN-PVRRR------ITA--GIGD--LKPGWYSAMGQGHAISVLSRAYYHSGGNVTYL 191 (578)
Q Consensus 123 ~~~~F~~aAdWLl~~qd~~~G~W~~-~~~~~------~~~--~~~~--L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL 191 (578)
..++..++++||++.|+ ++|||.- ..++. +++ .+.+ +.++- .=.=|.++..|..+ ... .+.+.
T Consensus 386 ~~~~l~~a~~~Ll~~Qn-~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~--~~~T~~~l~aL~~~-~~r--~~~~~ 459 (621)
T TIGR01787 386 KRDRLRDAVNWILGMQS-SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPY--VDVTARVIQALGAF-GHR--ADEIR 459 (621)
T ss_pred cHHHHHHHHHHHHHHcC-CCCCEeeeccccchHHHHHhcchhhhccccccCCC--CchHHHHHHHHHHh-cCc--cHhHH
Confidence 34678889999999999 9999973 22111 100 0111 11111 12445666666433 222 23467
Q ss_pred HHHHHHhhccccc-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHh
Q psy7540 192 NTALRALKVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLK 270 (578)
Q Consensus 192 ~aA~kal~~f~~p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk 270 (578)
++.+||+++.... -++|+... .|--.|. -|.-++|.+|........+. ..-+++++-|+
T Consensus 460 ~~i~rAl~~L~~~Q~~DGsw~g------~wg~~y~--------YgT~~al~aL~~~G~~~~~~------~~i~rA~~~L~ 519 (621)
T TIGR01787 460 NVLERALEYLRREQRADGSWFG------RWGVNYT--------YGTGFVLSALAAAGRTYRNC------PEVQKACDWLL 519 (621)
T ss_pred HHHHHHHHHHHHhcCCCCCCcc------cCCCCCc--------hhHHHHHHHHHHhCCcccCC------HHHHHHHHHHH
Confidence 8999999988765 34444321 2322221 24457888887654332221 23566777666
Q ss_pred hhccCccCCCc
Q psy7540 271 RMLNMYDTGSG 281 (578)
Q Consensus 271 ~~Lp~yD~g~w 281 (578)
..- ...|+|
T Consensus 520 ~~Q--~~DGGW 528 (621)
T TIGR01787 520 SRQ--MPDGGW 528 (621)
T ss_pred hhc--CCCCCC
Confidence 653 235666
No 44
>KOG2244|consensus
Probab=67.67 E-value=11 Score=43.04 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHhcCCChhHHHHHHHHhhccccc---ccCCCeee-eecCCc--ceeecCCCCCCceeechHHHHHHhh
Q psy7540 170 QGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLP---IYKGGVQS-KFLDKF--PWYEEYPTTPAVFILNGFIYSLFGL 243 (578)
Q Consensus 170 QG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p---~~~GGvl~-~~~~~~--~wyeEYpt~p~~~VLNGfiysLiGL 243 (578)
||.+||=|++|+++++.+++|++.|...++..... +.++-++. .|.++. .==.+++-....--|.-.-|-.-||
T Consensus 507 nGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gL 586 (786)
T KOG2244|consen 507 NGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGL 586 (786)
T ss_pred cchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHH
Confidence 78999999999999955669999999999865544 44443332 232111 1111222111222456666777788
Q ss_pred hhhhhhCCCc-cHHHHHHHHHHHHHHHhhhccCccCCCc--ceecccccc--cCCCCCcCCCchhHHHHHHHHHHHhhcC
Q psy7540 244 YDLVTLSPRS-KQKEALSLYDQGITSLKRMLNMYDTGSG--SSYDLRHIS--LGIAPKIARCDYHATHVNQLLLLATIEK 318 (578)
Q Consensus 244 YD~~~~t~d~-~~~~A~~lf~~Gi~SLk~~Lp~yD~g~w--S~Ydl~h~~--~~~~pn~A~~~YH~lHi~qL~~L~~it~ 318 (578)
-|+++.+++. .-+-|.+|=+..=+ | .+|.|.. |.=+-..+. +...-.-|-|.=-.+-..-|.+|+.|++
T Consensus 587 LDlYea~~~~e~LkwA~~LQdtqdk-----l-FWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~ 660 (786)
T KOG2244|consen 587 LDLYEAGGGIEWLKWAIKLQDTQDK-----L-FWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVA 660 (786)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHH-----h-eecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhh
Confidence 8888887643 33456655442211 1 2453322 222210000 0000001112222334445788999999
Q ss_pred CccccccCcccccccCC
Q psy7540 319 DKIISDTGVPVTTQWDP 335 (578)
Q Consensus 319 D~~f~~~A~rW~~q~~~ 335 (578)
.+.+.+.|.+.-+....
T Consensus 661 ~e~yl~ka~~ll~~fse 677 (786)
T KOG2244|consen 661 AESYLNKAHRLLAVFSE 677 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888887766654
No 45
>PLN02993 lupeol synthase
Probab=66.36 E-value=1.9e+02 Score=34.79 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhcCCC--CCCCcccccccc--cccCCCCCCCCchhhhhhhHHHHH---HHHHH-HhcCCChhHHHH
Q psy7540 122 DHMAQFYATAEWLVNHQDP--KTGGWPNPVRRR--ITAGIGDLKPGWYSAMGQGHAISV---LSRAY-YHSGGNVTYLNT 193 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~--~~G~W~~~~~~~--~~~~~~~L~~gW~SaMaQG~aiSv---L~RAY-~~t~gD~kYL~a 193 (578)
+......+|.+||.+.|-. ..|-|.+.+++. =+..|..-..+|--+=+-+.++.+ |.+.- .+- +++..-++
T Consensus 436 ~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~-~~~~~~~~ 514 (763)
T PLN02993 436 ETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVV-GQKIDPEQ 514 (763)
T ss_pred ccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccc-cccchHHH
Confidence 5678889999999999952 346666555432 133345556677777777777763 32221 222 35556678
Q ss_pred HHHHhhccccc-ccCCCeeeeec-CCcceeecCC
Q psy7540 194 ALRALKVFKLP-IYKGGVQSKFL-DKFPWYEEYP 225 (578)
Q Consensus 194 A~kal~~f~~p-~~~GGvl~~~~-~~~~wyeEYp 225 (578)
-.+|+++..-- ...||+-+... ++..|.|.-|
T Consensus 515 l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln 548 (763)
T PLN02993 515 LYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLN 548 (763)
T ss_pred HHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCC
Confidence 88888876655 77888755432 3457776444
No 46
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=64.01 E-value=67 Score=37.62 Aligned_cols=156 Identities=13% Similarity=-0.003 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCCCCcccccccc--cccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCC---hhHHHHH
Q psy7540 121 SDHMAQFYATAEWLVNHQD-PKTGGWPNPVRRR--ITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGN---VTYLNTA 194 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd-~~~G~W~~~~~~~--~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD---~kYL~aA 194 (578)
+++.+...+|.+||++.|- ...|.|.+.+++. =|-++.+-..+|-.+=+=+.++.+|.++-+.. .. +..-++-
T Consensus 324 ~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~-~~~~~~~~~~~l 402 (634)
T TIGR03463 324 GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLG-LNPEERVPQARL 402 (634)
T ss_pred hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcC-CcccccccHHHH
Confidence 3566888999999999992 1223333222111 01122233455555666778888888775432 21 1233566
Q ss_pred HHHhhccccc-ccCCCeeeeec-CCcceeecCCC---------CCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHH
Q psy7540 195 LRALKVFKLP-IYKGGVQSKFL-DKFPWYEEYPT---------TPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYD 263 (578)
Q Consensus 195 ~kal~~f~~p-~~~GGvl~~~~-~~~~wyeEYpt---------~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~ 263 (578)
.+|+++..-- .++||.-+... ++..|+|..|. .++..-..+..-..++.+ ....++...++...-.+
T Consensus 403 ~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~--~~~~~~~~~~~i~~ai~ 480 (634)
T TIGR03463 403 QDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAW--RKHHPHVPDGRITRAIS 480 (634)
T ss_pred HHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHH--hhcCcchhhhHHHHHHH
Confidence 6666655444 55788754321 23567554432 334444445444444443 33222211112233366
Q ss_pred HHHHHHhhhccCccCCCc
Q psy7540 264 QGITSLKRMLNMYDTGSG 281 (578)
Q Consensus 264 ~Gi~SLk~~Lp~yD~g~w 281 (578)
+++.=|+..- -..|+|
T Consensus 481 rav~~L~~~Q--~~dGsW 496 (634)
T TIGR03463 481 RGVRFLRSRQ--REDGSF 496 (634)
T ss_pred HHHHHHHHhc--CCCCCc
Confidence 7777666653 235666
No 47
>PLN03012 Camelliol C synthase
Probab=61.09 E-value=47 Score=39.78 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccc
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKL 203 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~ 203 (578)
.+..++|++||++.|. +||||.=.+.-.....+..++.+--.+-.-.-|+..|+.|-+.- .|.. +.+||++.+.-
T Consensus 638 ~~~Irrav~fLls~Q~-~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~-~~~~---~i~Rg~~~Ll~ 712 (759)
T PLN03012 638 CEAIRKGVHFLLAAQK-DNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAE-RDPI---PLHRAAKLIIN 712 (759)
T ss_pred cHHHHHHHHHHHHhcC-CCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCC-CCcH---HHHHHHHHHHH
Confidence 3677889999999999 99999544321111112222212122233355677777765543 4433 34455544443
Q ss_pred c-ccCCCe-----eeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhC
Q psy7540 204 P-IYKGGV-----QSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLS 250 (578)
Q Consensus 204 p-~~~GGv-----l~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t 250 (578)
. -+.|+. .++|+ ..++-.|+.=+ +||-|+.|-.|.+..
T Consensus 713 ~Q~~dG~W~q~~~~G~F~--~~~~i~Y~~Yr-------~~FPl~ALg~Y~~~~ 756 (759)
T PLN03012 713 SQLENGDFPQQEATGAFL--KNCLLHYAAYR-------NIFPLWALAEYRARV 756 (759)
T ss_pred cccCCCCCCCceeeeeec--cceEEecCccc-------hHHHHHHHHHHHHhc
Confidence 2 334442 23332 24566666544 568998888776544
No 48
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=60.67 E-value=66 Score=37.66 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccccccc--ccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcc
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRI--TAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVF 201 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~--~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f 201 (578)
.....+|.+||++.|-...|.|.+.+.+.- |-+|.....+|-..=.=+.++.+|.++ .+. .++.+-++-.+|+++.
T Consensus 335 ~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~-~~~-~~~~~~~~i~ra~~wL 412 (635)
T TIGR01507 335 HDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGL-RLP-DERRRRDAMTKAFRWI 412 (635)
T ss_pred CHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHc-CCC-ccccchHHHHHHHHHH
Confidence 357889999999998423344443332210 112222222232333445577777776 444 5667889999999988
Q ss_pred ccc-ccCCCeeeee-cCCcceeecCCC-------CCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhh
Q psy7540 202 KLP-IYKGGVQSKF-LDKFPWYEEYPT-------TPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRM 272 (578)
Q Consensus 202 ~~p-~~~GGvl~~~-~~~~~wyeEYpt-------~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~ 272 (578)
... .++||.-+.. .++..|++.-|. .|+.--+-++.--.+|.... ..+ ..--++|++=|+.+
T Consensus 413 l~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~---~~~------~~~i~rav~~L~~~ 483 (635)
T TIGR01507 413 AGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGY---DDA------WPVIERAVEYLKRE 483 (635)
T ss_pred HHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCC---Cch------hHHHHHHHHHHHHc
Confidence 855 7788874321 234466665443 23333344555555555431 111 22356677777665
Q ss_pred ccCccCCCc
Q psy7540 273 LNMYDTGSG 281 (578)
Q Consensus 273 Lp~yD~g~w 281 (578)
- -..|+|
T Consensus 484 Q--~~dG~W 490 (635)
T TIGR01507 484 Q--EPDGSW 490 (635)
T ss_pred c--CCCCCC
Confidence 3 345666
No 49
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=59.83 E-value=30 Score=36.56 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=74.7
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHh
Q psy7540 119 STSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRAL 198 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal 198 (578)
.+++.++....+.+|+.+.+. ++|.||...+.. ..+....|=-+ +=|.++ .|.+|++++ +|++|.++|++++
T Consensus 182 ~~~~~~~~i~~~i~~~~~~~~-~~g~w~~~~~~~----~~~~~~~wChG-~~Gi~~-~l~~~~~~~-~~~~~~~~~~~~~ 253 (343)
T cd04794 182 LKPSLAPLIKRSLDYLLSLQF-PSGNFPSSLGNR----KRDRLVQWCHG-APGIVY-LLAKAYLVF-KEEQYLEAAIKCG 253 (343)
T ss_pred CCccHHHHHHHHHHHHHHhhc-cCCCCCCccCCC----CCCccccccCC-CchHHH-HHHHHHHHh-CCHHHHHHHHHHH
Confidence 457889999999999999987 889998643211 01122334332 123333 457999999 9999999999998
Q ss_pred hcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCcc-HHHHHHHHHHHHHH
Q psy7540 199 KVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSK-QKEALSLYDQGITS 268 (578)
Q Consensus 199 ~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~-~~~A~~lf~~Gi~S 268 (578)
+.... . |+.. ++..+ =|=+=|..+.|+-+|+ .++++. .+.|....+.-+.+
T Consensus 254 ~~~~~---~-g~~~---~~~~l---------CHG~~G~~~~lL~~~~---~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 254 ELIWK---R-GLLK---KGPGL---------CHGIAGNAYAFLLLYR---LTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred HHHHH---h-CCcc---CCCcc---------ccCccchHHHHHHHHH---HhCcHHHHHHHHHHHHHHhcc
Confidence 75321 1 1111 00000 0112366788888887 677654 34566666655555
No 50
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=59.73 E-value=46 Score=38.14 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCC---CCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhh
Q psy7540 123 HMAQFYATAEWLVNHQDP---KTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALK 199 (578)
Q Consensus 123 ~~~~F~~aAdWLl~~qd~---~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~ 199 (578)
..+.|..|.+|+.++.+- .++.+.+. +-.+ ..+.=|+-||.+| +|+.||+-|....+
T Consensus 126 l~~Ef~~a~~~V~~~l~f~~~~~~~vsvF-EttI------------------R~LGGLLSAy~Ls-~d~~lL~kA~dLgd 185 (522)
T PTZ00470 126 LKKEYKEGRDWVANNLKQSKDTGLGVSVF-ETTI------------------RVLGGLLSAYDLT-GDEMYLEKAREIAD 185 (522)
T ss_pred ChHHHHHHHHHHHhhCCCCCCCCCeeeee-eeeh------------------hhHhHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 578999999999986551 23333322 1111 1233488899999 99999998887555
No 51
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=57.00 E-value=26 Score=42.25 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=79.2
Q ss_pred HHHHHH-HHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhC
Q psy7540 172 HAISVL-SRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLS 250 (578)
Q Consensus 172 ~aiSvL-~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t 250 (578)
-||++| .-...+| |...|-++|.+|+.+....+.. .. .+| +.-...=+-|.+|+|+-+++ ++
T Consensus 650 ~GI~LF~ayL~~vt-gk~~Y~~ia~~~L~~~~~sv~~-----~~---~~~-----~iga~~G~~g~~yal~~I~~---~~ 712 (963)
T COG4403 650 AGIALFFAYLALVT-GKDYYKEIAIKALQDSRKSVNN-----NL---NPI-----NIGAFTGLSGYFYALWKIYS---VT 712 (963)
T ss_pred chHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHhhhh-----cc---CCc-----ccccccccchhhhhhHHHHH---hc
Confidence 456665 4556889 8889999999999999887765 11 112 12233446789999999999 77
Q ss_pred CCccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccc
Q psy7540 251 PRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVT 330 (578)
Q Consensus 251 ~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~ 330 (578)
.|.. +..=..+++..|..+.- .+=+ +|+..+ .+--+..|..+|+.|++|.|.+.|.-|.
T Consensus 713 ~~~~---l~~~~~~~i~~le~~v~----~~~~-~d~i~G-------------l~g~i~~L~~iYk~~~epk~l~~ais~~ 771 (963)
T COG4403 713 RDNY---LIQSAENSIRHLEILVQ----KSKD-PDFING-------------LAGVICVLVSIYKLTDEPKFLELAISLG 771 (963)
T ss_pred ccHH---HHHHHHHHHHHHHHHHh----hccC-cchhhc-------------cHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 7653 33334444443333222 1111 454322 2345778999999999999999888554
Q ss_pred c
Q psy7540 331 T 331 (578)
Q Consensus 331 ~ 331 (578)
.
T Consensus 772 ~ 772 (963)
T COG4403 772 R 772 (963)
T ss_pred H
Confidence 3
No 52
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=53.52 E-value=22 Score=35.50 Aligned_cols=62 Identities=8% Similarity=0.098 Sum_probs=37.4
Q ss_pred eEEEEEEEEecCc-cEEEEEEecc-cCceEEEEEEeccceEEeeCC----ceEEeccCCCCcchhhHH
Q psy7540 14 FILGVTLSILSNS-SLSVALENSE-LQEMWRLHYVCSRDLITARGQ----DIYYGIGCSSTWQTLTRD 75 (578)
Q Consensus 14 ~~~s~~~~~~~~~-s~~v~~~~~~-~~~~~~~hy~~~~~~i~~~~~----~~~~g~g~~~~w~~~trd 75 (578)
.+||||-|.+.+| -++|++..++ ..+.-++-+++.+.-...+++ ..+.||+-...|..++-+
T Consensus 89 YtLsF~AkA~t~g~qv~V~Irl~~~ngK~~~~Ffmr~~~d~~sqpn~s~a~y~~~ikkAgkWtkv~~~ 156 (212)
T PF15425_consen 89 YTLSFDAKADTNGTQVHVFIRLHNDNGKDNQRFFMRRDYDAQSQPNQSDAQYNFKIKKAGKWTKVSVY 156 (212)
T ss_dssp EEEEEEEEESSTT-EEEEEEE-B-TTS-B---EEEETT--TTT-TTSBSS-EEEE--STT--EEEEEE
T ss_pred EEEEEEeecccCCCcEEEEEEEecCCCccceeEEEEeccccccCccchhhhhhhccccCCceEEEEEE
Confidence 4899999999999 7888888554 445666777777554443333 588899999999998854
No 53
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=52.71 E-value=22 Score=38.84 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCC---------CCC-----cccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCC
Q psy7540 121 SDHMAQFYATAEWLVNHQDPK---------TGG-----WPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGG 186 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~---------~G~-----W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~g 186 (578)
+..++..+=.+|||++-|+ + +|+ |.-+....-.........+--|+-+-|..+.+|+.|+.+. +
T Consensus 94 ~dllde~kwg~D~llkm~~-~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~-k 171 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQD-SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF-K 171 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBS-CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHhccC-CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc-c
Confidence 5679999999999999999 5 332 3211000000000000111125666788889999999999 7
Q ss_pred C------hhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCcc
Q psy7540 187 N------VTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSK 254 (578)
Q Consensus 187 D------~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~ 254 (578)
+ +++|++|+++.+........ .... .....-..|+. +-..+-++.+-.-||. .|+++.
T Consensus 172 ~~d~~~A~~~L~~A~~~~~~a~~~~~~---~~~~-~~~~~~~~Y~~---~~~~De~~wAA~~Ly~---aTg~~~ 235 (444)
T PF00759_consen 172 DFDPAYAAQCLKAAKEAYAFAKKNPGV---YSDN-PQPNGGGFYNS---SGYEDELAWAAAELYR---ATGDES 235 (444)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHSTTH---GGGT-STCTTTTTSHC---S-SHHHHHHHHHHHHH---HHT-HH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCc---ccCC-cccccCCcccC---CCcccHHHHHHHHHHH---hcCcHH
Confidence 6 68999999999977654321 1110 00111122332 1122335677777777 777653
No 54
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=52.41 E-value=11 Score=32.53 Aligned_cols=17 Identities=41% Similarity=1.124 Sum_probs=14.8
Q ss_pred HHHHHHhcCCCCCCCccc
Q psy7540 130 TAEWLVNHQDPKTGGWPN 147 (578)
Q Consensus 130 aAdWLl~~qd~~~G~W~~ 147 (578)
+++||.+.|+ ++|+|..
T Consensus 47 ~~~~L~~~q~-~dGg~~~ 63 (113)
T PF13249_consen 47 AVEWLLSQQN-PDGGWGS 63 (113)
T ss_dssp HHHHHHHHB--TTSGBBS
T ss_pred HHHHHHHhCC-CCCCccC
Confidence 7999999999 9999975
No 55
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=50.91 E-value=1.1e+02 Score=37.34 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=83.0
Q ss_pred cccchh-hHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCceeeccCCCceEeeCCCCCCceeehhHHHHHHHhH
Q psy7540 403 SAMGQG-HAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLY 481 (578)
Q Consensus 403 SaMaQG-~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~GLy 481 (578)
+.|=.| -||++|..+=-+-||...|=++|.+||.+....+.. . -.+| +.-...=+-|.+|+|+-+|
T Consensus 643 ~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~-----~---~~~~-----~iga~~G~~g~~yal~~I~ 709 (963)
T COG4403 643 NDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNN-----N---LNPI-----NIGAFTGLSGYFYALWKIY 709 (963)
T ss_pred chhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhh-----c---cCCc-----ccccccccchhhhhhHHHH
Confidence 344334 356655544444457889999999999998866654 1 1112 2223444789999999999
Q ss_pred hhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCCCCCCCCChHHHHHHHHHHHHhhcCChhhHH
Q psy7540 482 DLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISD 561 (578)
Q Consensus 482 D~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~qL~~L~~it~d~~f~~ 561 (578)
++ +.++ .+..=..+++.-|..+.. -+=+ +| ++-| -.--|.-|..+|..|+.|.|.+
T Consensus 710 ~~---~~~~---~l~~~~~~~i~~le~~v~----~~~~-~d---~i~G----------l~g~i~~L~~iYk~~~epk~l~ 765 (963)
T COG4403 710 SV---TRDN---YLIQSAENSIRHLEILVQ----KSKD-PD---FING----------LAGVICVLVSIYKLTDEPKFLE 765 (963)
T ss_pred Hh---cccH---HHHHHHHHHHHHHHHHHh----hccC-cc---hhhc----------cHHHHHHHHHHHhhccchHHHH
Confidence 88 4332 333223444443333222 1111 12 1111 1346777999999999999999
Q ss_pred HHHHHHhhhhccc
Q psy7540 562 TGQRWAGYIQGKR 574 (578)
Q Consensus 562 ~a~rW~~Y~~~~r 574 (578)
.|--|.+++-.++
T Consensus 766 ~ais~~~~l~~~~ 778 (963)
T COG4403 766 LAISLGRILMEKI 778 (963)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999986554
No 56
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=47.67 E-value=76 Score=36.95 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhh--hhhhHHHHHHHHHHHhcCCCh-hHHHHHHHHh
Q psy7540 122 DHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSA--MGQGHAISVLSRAYYHSGGNV-TYLNTALRAL 198 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~Sa--MaQG~aiSvL~RAY~~t~gD~-kYL~aA~kal 198 (578)
+..+...+|++||.++|+ ++|+|.-. |-.. .+.+.++..|.. . |++ ..-++.++|+
T Consensus 473 ~i~~~i~rAv~~L~~~Q~-~DGsW~g~---------------wg~~~~Y~T~~al~AL~~----~-G~~~~~~~~i~~a~ 531 (634)
T cd02892 473 EIDPAIRRAVKYLLREQE-PDGSWYGR---------------WGVCYIYGTWFALEALAA----A-GEDYENSPYIRKAC 531 (634)
T ss_pred HHHHHHHHHHHHHHHccC-CCCCcccc---------------CCCccHHHHHHHHHHHHH----h-CCcccCcHHHHHHH
Confidence 345678899999999999 89999421 1111 134444555544 3 332 2234555666
Q ss_pred hccccc-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCcc
Q psy7540 199 KVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYD 277 (578)
Q Consensus 199 ~~f~~p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD 277 (578)
+++..- .++||.-..+ ...+-..|.....+. ...-=+++++|-..-.. +. ...++|+.=|... .-+
T Consensus 532 ~~L~s~Q~~DGgWge~~--~s~~~~~~~~~~~s~-~~~TA~AllaLl~~g~~--~~------~~i~r~i~wL~~~--Q~~ 598 (634)
T cd02892 532 DFLLSKQNPDGGWGESY--LSYEDKSYAGGGRST-VVQTAWALLALMAAGEP--DS------EAVERGIKYLLNT--QLP 598 (634)
T ss_pred HHHHhcCCCCCCCCCcc--ccccCcccCCCCCCc-HHHHHHHHHHHHHcCCC--Ch------HHHHHHHHHHHHc--CCC
Confidence 555433 5667743222 111112232111111 11224677787653322 11 2356677766664 234
Q ss_pred CCCcc
Q psy7540 278 TGSGS 282 (578)
Q Consensus 278 ~g~wS 282 (578)
.|+|.
T Consensus 599 ~G~w~ 603 (634)
T cd02892 599 DGDWP 603 (634)
T ss_pred CCCCC
Confidence 57773
No 57
>PLN02993 lupeol synthase
Probab=46.54 E-value=96 Score=37.29 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccc
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKL 203 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~ 203 (578)
.....+|++||++.|. +||||--.+.-.....+..++.+--.+-.-+-|+-.|+.| |..++.-.+.+||++...-
T Consensus 638 ~~~IrrAv~fLls~Q~-~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~a----G~~~~~~~~l~Rgi~~L~~ 712 (763)
T PLN02993 638 CLAMRKGVHFLLTIQR-DDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHA----GQAERDLIPLHRAAKLIIT 712 (763)
T ss_pred cHHHHHHHHHHHHhcC-CCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHc----CCCCCCcHHHHHHHHHHHh
Confidence 4678899999999999 9999954331111111122222211223335566666665 2333333455556655433
Q ss_pred c-ccCCCe-----eeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhh
Q psy7540 204 P-IYKGGV-----QSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVT 248 (578)
Q Consensus 204 p-~~~GGv-----l~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~ 248 (578)
. -++|+. .++|+ ..++-.|+.=+ ++|-|+.|-.|.+
T Consensus 713 ~Q~~~G~W~q~~~~G~F~--~~~~i~Y~~Yr-------~~FPl~ALg~Y~~ 754 (763)
T PLN02993 713 SQLENGDFPQQEILGAFM--NTCMLHYATYR-------NTFPLWALAEYRK 754 (763)
T ss_pred ccCCCCCCCCcceeceEC--ccceeccCccc-------hHHHHHHHHHHHH
Confidence 2 334442 22332 24455555323 5688888877654
No 58
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=46.13 E-value=50 Score=38.48 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhh-hhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccc
Q psy7540 125 AQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAM-GQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKL 203 (578)
Q Consensus 125 ~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaM-aQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~ 203 (578)
+...+|.+||++.|. ++|||.-...-.....+.. .+ -|-+ .-+.|+..|..|-. . + .++.+||++....
T Consensus 509 ~~i~rA~~~L~~~Q~-~DGGWge~~~s~~~~~y~~--~~-~S~~s~Ta~AL~AL~~ag~-~-~----~~ai~rgv~~L~~ 578 (621)
T TIGR01787 509 PEVQKACDWLLSRQM-PDGGWGEDCFSYEDPSYVG--SG-GSTPSQTGWALMALIAAGE-A-D----SEAIERGVKYLLE 578 (621)
T ss_pred HHHHHHHHHHHhhcC-CCCCCCcCCccccccccCC--CC-CCCHHHHHHHHHHHHHcCc-c-c----hHHHHHHHHHHHH
Confidence 667789999999999 9999953221100000111 01 1222 23556666655432 2 2 2366777776664
Q ss_pred c-ccCCCeeeeec-CC---cceeecCCCCCCceeechHHHHHHhhhhh
Q psy7540 204 P-IYKGGVQSKFL-DK---FPWYEEYPTTPAVFILNGFIYSLFGLYDL 246 (578)
Q Consensus 204 p-~~~GGvl~~~~-~~---~~wyeEYpt~p~~~VLNGfiysLiGLYD~ 246 (578)
- .++||.-.... +. ..+|-.|+. --++|.|+.|-.|
T Consensus 579 ~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~-------Y~~~fpl~ALg~y 619 (621)
T TIGR01787 579 TQRPDGDWPQEYITGVGFPKNFYLKYTN-------YRNIFPLWALGRY 619 (621)
T ss_pred hCCCCCCCCCccccCCCCcccceecccc-------cchhhHHHHHHHH
Confidence 3 34555433221 11 234444442 2356788777544
No 59
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=45.82 E-value=20 Score=36.35 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccc
Q psy7540 169 GQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKL 203 (578)
Q Consensus 169 aQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~ 203 (578)
.-+.++-.|..||.+| ||++|.+.|.+.|+.+..
T Consensus 57 ~~a~a~~~lAlay~~T-gd~~YA~~a~~iL~~W~~ 90 (272)
T PF05426_consen 57 RDADAAYALALAYYLT-GDEKYADKAAEILNAWAL 90 (272)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHc
Confidence 4566778899999999 999999999999987643
No 60
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.85 E-value=41 Score=38.44 Aligned_cols=130 Identities=23% Similarity=0.234 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHhhhccc-ccccCCCceeeccCCCceEeeCCCCCCceeehhHHHHHHHhHhhhhcCCcc
Q psy7540 412 SVLSRAYYHSGGNVTYLNTALRALKVFK-LPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRS 490 (578)
Q Consensus 412 Svl~RAY~~t~gd~~YL~aA~kal~~f~-~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~~~~ 490 (578)
--|++-|..| |+++||+.|++.+.-=- =|..+||- +...--=|=+||=.+|+-|+++.++|+
T Consensus 185 lAl~~Ly~~T-g~~rYL~LA~~Fi~~rg~~P~~~rg~----------------e~~~gHAvr~iyl~~G~A~l~~~~gDd 247 (589)
T COG3533 185 LALAELYRLT-GDQRYLDLARRFIHQRGVEPLAQRGD----------------ELEGGHAVRQIYLYIGAADLAEETGDD 247 (589)
T ss_pred HHHHHHHHHh-cChHHHHHHHHHHHHhccChhhcCch----------------hhhhhhHHHHHHHhhhHHHHHHHhCCH
Confidence 3577999888 79999999998654322 23444443 111112467899999999999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCC-CCCCCCCChHHH--HHHHH---HHHHhhcCChhhHHHHH
Q psy7540 491 KQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGI-APKIARCDYHAT--HVNQL---LLLATIEKDKIISDTGQ 564 (578)
Q Consensus 491 ~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~-~p~~A~~~YH~l--Hi~qL---~~L~~it~d~~f~~~a~ 564 (578)
....|.+-|-+-+.+-+ +|=||.-+ =|.-||+... -|| +--|-.. -|.+| .-|-..++|..+.++.+
T Consensus 248 s~r~~~~~lW~~~t~k~----~YitGG~g-~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml~~~~d~~yaDvmE 320 (589)
T COG3533 248 SLRQAAEFLWQNVTTRQ----SYITGGNG-SSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRMLGWGPDSQYADVME 320 (589)
T ss_pred HHHHHHHHHHHHhhhhh----eEEecccC-CccccCCccccCcc--cchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 66666666666665432 46675443 2334444211 133 2234422 23333 34667788998888877
Q ss_pred H
Q psy7540 565 R 565 (578)
Q Consensus 565 r 565 (578)
|
T Consensus 321 r 321 (589)
T COG3533 321 R 321 (589)
T ss_pred H
Confidence 6
No 61
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=44.69 E-value=90 Score=36.59 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccc-ccc------ccc-CC-CCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHH
Q psy7540 122 DHMAQFYATAEWLVNHQDPKTGGWPNPV-RRR------ITA-GI-GDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLN 192 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~~~G~W~~~~-~~~------~~~-~~-~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~ 192 (578)
+..++..+|.+||++.|. ++|||...- ++. ++. ++ .-+.|+ +..+ =+.++.+|.+ . +..+--.
T Consensus 400 ~~~~~i~ra~~wLl~~Qn-~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~-~~d~-Ta~~l~al~~----~-g~~~~~~ 471 (635)
T TIGR01507 400 RRRDAMTKAFRWIAGMQS-SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPP-TADV-TARVLECLGS----F-GYDDAWP 471 (635)
T ss_pred cchHHHHHHHHHHHHhcC-CCCCEecccCCcchhHHhcCCccccccccCCC-CccH-HHHHHHHHHH----h-CCCchhH
Confidence 446789999999999999 999996421 111 100 00 001111 1111 2444444443 3 2222245
Q ss_pred HHHHHhhccccc-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhh
Q psy7540 193 TALRALKVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKR 271 (578)
Q Consensus 193 aA~kal~~f~~p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~ 271 (578)
+.+||+++.... -.+||.... |-..| .=|.-.+|.+|-..-.-..+ ..-++++.=|+.
T Consensus 472 ~i~rav~~L~~~Q~~dG~W~g~------wg~~~--------~Y~T~~al~aL~~~g~~~~~-------~~i~rAv~wL~~ 530 (635)
T TIGR01507 472 VIERAVEYLKREQEPDGSWFGR------WGVNY--------LYGTGAVLSALKAVGIDTRE-------PYIQKALAWLES 530 (635)
T ss_pred HHHHHHHHHHHccCCCCCCccC------CCCcc--------ccHHHHHHHHHHHcCCCccc-------HHHHHHHHHHHH
Confidence 777788777665 444543222 22111 11666788888652211111 225566666655
Q ss_pred hccCccCCCcc
Q psy7540 272 MLNMYDTGSGS 282 (578)
Q Consensus 272 ~Lp~yD~g~wS 282 (578)
. .-..|+|.
T Consensus 531 ~--Q~~DGGWg 539 (635)
T TIGR01507 531 H--QNPDGGWG 539 (635)
T ss_pred h--cCCCCCCC
Confidence 4 23457774
No 62
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=43.96 E-value=37 Score=33.14 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcc
Q psy7540 122 DHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVF 201 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f 201 (578)
...+...++++||++.|. ++|+|....... .. ......+.-..+.++.+|.++.... . .....++++.+
T Consensus 101 ~~~~~~~~~~~~l~~~q~-~dG~~~~~~~~~--~~---~~~~~~~~~~t~~al~aL~~~~~~~-~----~~~~~~~~~~l 169 (300)
T cd00688 101 VDRIDLARALNWLLSLQN-EDGGFREDGPGN--HR---IGGDESDVRLTAYALIALALLGKLD-P----DPLIEKALDYL 169 (300)
T ss_pred cCHHHHHHHHHHHHHccC-CCCCeeeecCCC--Cc---ccCCCCcccHHHHHHHHHHHcCCCC-C----cHHHHHHHHHH
Confidence 445667889999999999 999997553210 00 0111234445677888887776655 3 34555666555
Q ss_pred ccc-ccCCCe
Q psy7540 202 KLP-IYKGGV 210 (578)
Q Consensus 202 ~~p-~~~GGv 210 (578)
... ..+||+
T Consensus 170 ~~~q~~~g~~ 179 (300)
T cd00688 170 LSCQNYDGGF 179 (300)
T ss_pred HHHhcCCCCc
Confidence 544 456665
No 63
>KOG2429|consensus
Probab=42.14 E-value=61 Score=37.42 Aligned_cols=165 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccCccCCCcceec---ccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCC
Q psy7540 260 SLYDQGITSLKRMLNMYDTGSGSSYD---LRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPN 336 (578)
Q Consensus 260 ~lf~~Gi~SLk~~Lp~yD~g~wS~Yd---l~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~ 336 (578)
+|..-.-+--+.+||.|+|..+--|. |.++...+.-++..--=-.+=+--+=.|..+||||.|.+.|+
T Consensus 152 ~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~GV~~~Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~--------- 222 (622)
T KOG2429|consen 152 ELLRLAEDLARRLLPAFETPTGIPYGRVNLKYGVDKGETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVAR--------- 222 (622)
T ss_pred hHHHHHHHHHHhhcccccCCCCCCcceeehhcCCCCCCCcceecccccceeeehhhhHHhhCCcHHHHHHH---------
Q ss_pred cccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHH
Q psy7540 337 GYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSR 416 (578)
Q Consensus 337 ~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~R 416 (578)
-|--+|...-..+.=-..++-|. ...|..+ .+-++-..|.++.+ |..
T Consensus 223 -------~A~~~lW~~RS~igLlGn~idV~------tG~W~~~--~sGIGAgiDSfyEY------------------llK 269 (622)
T KOG2429|consen 223 -------RALDALWSLRSGIGLLGNHIDVQ------TGEWTAP--DSGIGAGIDSFYEY------------------LLK 269 (622)
T ss_pred -------HHHHHHHhhcCCCCcccceeecc------ccceecc--ccccccchHHHHHH------------------HHH
Q ss_pred HHhhcCCChhHHHHHHHhhhcccccccCCCceeeccCCCceEeeCCCCCCceeehhHHHHHH
Q psy7540 417 AYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLF 478 (578)
Q Consensus 417 AY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~ 478 (578)
+|.++ ||++||+.=+.|..+-+ ..+..+.||.+-.-..++ |-+=+|-||.
T Consensus 270 ~yILf-gd~e~lemf~ea~~ai~----------~y~r~~~wY~~V~m~~G~-v~~p~~dSLq 319 (622)
T KOG2429|consen 270 GYILF-GDPELLEMFNEAYEAIQ----------KYTRKGPWYVNVNMDSGS-VSLPWFDSLQ 319 (622)
T ss_pred Hheec-CCHHHHHHHHHHHHHHH----------HHhhcCCeEEEEecCCCc-eehHHHhhHH
No 64
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=38.07 E-value=1.8e+02 Score=32.37 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHH----HHHHHHhh
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYL----NTALRALK 199 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL----~aA~kal~ 199 (578)
.+-.+++.+.+.+.|. ++|.+|..+.-.. ....-.|.|-. ..+..+..-|+.| ||...| ...++.++
T Consensus 168 ~~l~~~~l~~~~~~q~-~~G~~p~~~P~~~--~~~~~~~~w~l-----~~i~~~~~~y~~t-GD~~~l~~~~~~~~~~l~ 238 (509)
T PF05592_consen 168 AALYRKWLRDFADSQR-PDGLLPSVAPSYG--GGGFGIPDWSL-----AWIIIPWDYYLYT-GDREFLEEYYPAMKRYLD 238 (509)
T ss_dssp HHHHHHHHHHHHGGTT-TSTT-SSBSS-----SSGGGBHHHHH-----HHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-ccCCceEEecccC--CCCCCCccHHH-----HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 3556788899999999 8999986442210 01122344422 4567788899999 998755 56777777
Q ss_pred cccccccCCCeeeee-cCCccee---ecCC-CCCCceeech-HHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhc
Q psy7540 200 VFKLPIYKGGVQSKF-LDKFPWY---EEYP-TTPAVFILNG-FIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRML 273 (578)
Q Consensus 200 ~f~~p~~~GGvl~~~-~~~~~wy---eEYp-t~p~~~VLNG-fiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~L 273 (578)
.+.....+| ..... .+-..|. ..+. ..+...+.|. ++++|--+-+++.+.+++ +..+-|.+=...||+.+
T Consensus 239 ~~~~~~~~~-~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~---~~a~~y~~~a~~lk~a~ 314 (509)
T PF05592_consen 239 YLERRVDDG-LDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKD---EDAAEYRARAERLKAAI 314 (509)
T ss_dssp HHHTTB-TS-SB-CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-H---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcc-ccCCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHH
Confidence 777777662 11111 1113565 1222 2456667888 455666677778888764 23445666666777766
Q ss_pred c--CccCCCc
Q psy7540 274 N--MYDTGSG 281 (578)
Q Consensus 274 p--~yD~g~w 281 (578)
- .||....
T Consensus 315 ~~~~~d~~~g 324 (509)
T PF05592_consen 315 NRHFWDPEKG 324 (509)
T ss_dssp HHHCEETTTT
T ss_pred HHhccCcccC
Confidence 5 3544433
No 65
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=37.58 E-value=53 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCCCCCcccc
Q psy7540 127 FYATAEWLVNHQDPKTGGWPNP 148 (578)
Q Consensus 127 F~~aAdWLl~~qd~~~G~W~~~ 148 (578)
...+.+|+++.|. ++|||.-.
T Consensus 3 ~~~~~~~l~~~Q~-~dGGf~~~ 23 (44)
T PF00432_consen 3 VEKLIRFLLSCQN-PDGGFGGR 23 (44)
T ss_dssp HHHHHHHHHHTBB-TTSSBBSS
T ss_pred HHHHHHHHHHHCC-CCCCCCCC
Confidence 3578899999999 99999633
No 66
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=37.31 E-value=53 Score=33.96 Aligned_cols=76 Identities=21% Similarity=0.409 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhh
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALK 199 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~ 199 (578)
+++..+....+.+|+.++....+|+|+-.....- ... .+.|=.+.+ |.+++ +.++++.+ +|+.|.+.+++++.
T Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~WC~G~~-Gi~~~-~~~~~~~~-~~~~~~~~~~~~~~ 258 (355)
T PF05147_consen 186 DPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSN---YKS-RPSWCYGSP-GILLA-LLKAYKIL-DDEEYDEEAEQALE 258 (355)
T ss_dssp HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHH---HHC---SSSSSHH-HHHHH-HHHHHHHC-T-HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcccCCCCCCCCccc---ccc-ccccccCcH-HHHHH-HHHHHHhh-chHHHHHHHHHHHH
Confidence 4778999999999999999756777975543321 001 566755432 33333 37899999 99999999998887
Q ss_pred ccc
Q psy7540 200 VFK 202 (578)
Q Consensus 200 ~f~ 202 (578)
...
T Consensus 259 ~~~ 261 (355)
T PF05147_consen 259 SIL 261 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 67
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=34.94 E-value=51 Score=36.73 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=49.6
Q ss_pred HHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCCcccccccccccCCCCCCCCCChHHHHHH-------
Q psy7540 473 FIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVN------- 545 (578)
Q Consensus 473 fIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~p~~A~~~YH~lHi~------- 545 (578)
.|=+|++.||+..-.++...++|.+|-+ .++|.||+.++--|.-..+..+..+ ++..-...+.
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad-------~Ll~aF~t~~g~P~~~~n~~~~~~~---~~~~~~~~la~~gs~~l 151 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELAD-------RLLPAFDTPTGIPYPRVNLRTGGKN---RWPGGESSLAEAGSLQL 151 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHGGGGSSSSS---SEEETTTCEEE---TTCCGEEEHHHHCSSHH
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHH-------HHHHhccCCCccccceeeecccCCC---CCCCCccccccccccee
Confidence 3445777788862111112345655554 7899999976554432222111111 1111111111
Q ss_pred HHHHHHhhcCChhhHHHHHHHHhhhhc
Q psy7540 546 QLLLLATIEKDKIISDTGQRWAGYIQG 572 (578)
Q Consensus 546 qL~~L~~it~d~~f~~~a~rW~~Y~~~ 572 (578)
-+..|..+|+|+.|.+.++|=...+.+
T Consensus 152 Ef~~LS~lTgd~kY~~~a~~~~~~l~~ 178 (452)
T PF01532_consen 152 EFTRLSQLTGDPKYFDAADRIYDALWR 178 (452)
T ss_dssp HHHHHHHHHS-THHHHHHHHHHHHHHC
T ss_pred chhHHHHHhhccHHHHHHHHHHHHHHH
Confidence 356799999999999999998877766
No 68
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=34.78 E-value=25 Score=30.24 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccc
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPN 147 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~ 147 (578)
.+...++++||++.|. ++|+|.+
T Consensus 91 ~~~~~~a~~~l~~~Q~-~dGg~~y 113 (113)
T PF13249_consen 91 EEAVRKAVDWLLSCQN-PDGGWGY 113 (113)
T ss_dssp HTTHCCHHHHHHHTB--TTSSB-S
T ss_pred cHHHHHHHHHHHHhcC-CCCCCCc
Confidence 5666779999999999 9999963
No 69
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=34.24 E-value=44 Score=34.56 Aligned_cols=177 Identities=15% Similarity=0.059 Sum_probs=91.3
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCC--CcccccccccccCCCCCCCCchhhhhhhHH--HHHHHHHH-HhcCCChhHHHH
Q psy7540 119 STSDHMAQFYATAEWLVNHQDPKTG--GWPNPVRRRITAGIGDLKPGWYSAMGQGHA--ISVLSRAY-YHSGGNVTYLNT 193 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~qd~~~G--~W~~~~~~~~~~~~~~L~~gW~SaMaQG~a--iSvL~RAY-~~t~gD~kYL~a 193 (578)
.+++..+......+.|+++.. ... ..+....- + ......++|-|.+ +.+|.++| +.+ ++++|++.
T Consensus 123 ~~~~~l~~i~~~~~~l~~~~~-~~~~~~~~~~~~~------~--~~~~~~G~aHG~~Gi~~~L~~~~~~~~-~~~~~~~~ 192 (355)
T PF05147_consen 123 KDPKYLDIIEKILEKLLESII-NDDPSENQIGSEW------K--EGFINLGFAHGIAGILYALLRLYKKGT-KDPEYLKL 192 (355)
T ss_dssp CCHHS-HHHHHHHHHCCCHHC-CCHTCCGSSSHHC------H--TTBEE-STTTSHHHHHHHHCHCCHHT---HHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHh-hcccccCCCcccc------C--CCCccCCccccHHHHHHHHHHhhhccc-CchhHHHH
Confidence 346667888888888888877 311 11110000 0 1122345555543 56778999 699 99999999
Q ss_pred HHHHhhcccccc--cCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhh
Q psy7540 194 ALRALKVFKLPI--YKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKR 271 (578)
Q Consensus 194 A~kal~~f~~p~--~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~ 271 (578)
++++++...... .+|+..... +. +++.. ...--+|-.=-++.++...+..+++...+. ..+-+..+..
T Consensus 193 i~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~--~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 262 (355)
T PF05147_consen 193 IEQILNFLLKHFNTDDGGWPDNR-NN----SNYKS--RPSWCYGSPGILLALLKAYKILDDEEYDEE---AEQALESILQ 262 (355)
T ss_dssp HHHHHHHHHHC--TGCCT--SEC-TH----HHHHC----SSSSSHHHHHHHHHHHHHHCT-HHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccCCCCCCC-Cc----ccccc--ccccccCcHHHHHHHHHHHHhhchHHHHHH---HHHHHHHHHH
Confidence 999999877664 345421111 00 10000 223344544445555666667776643332 2333333222
Q ss_pred hccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCccccccc
Q psy7540 272 MLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQW 333 (578)
Q Consensus 272 ~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~ 333 (578)
.-+ .+.-..+=|+. +--+..|..+++.++++.+++.+++|....
T Consensus 263 ~~~-----~~~~~~lCHG~-------------aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T PF05147_consen 263 KGL-----FLNNPSLCHGT-------------AGILEILLDLYKYTGDEEYKELANKLIQKL 306 (355)
T ss_dssp H-T-----CTTSS-STTSH-------------HHHHHHHHHHHHHH--HCCHHHHHHHHHHH
T ss_pred ccc-----cCCCCceeCch-------------HHhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 23334455553 234556889999999999999998774443
No 70
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=34.21 E-value=84 Score=32.79 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCc---hhhh-hhhHHHHHHHHHHHhcCCC--hhHHHHHHHHh
Q psy7540 125 AQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGW---YSAM-GQGHAISVLSRAYYHSGGN--VTYLNTALRAL 198 (578)
Q Consensus 125 ~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW---~SaM-aQG~aiSvL~RAY~~t~gD--~kYL~aA~kal 198 (578)
+....+.+||++.|. ++|+|.-.. .+.+ ..+..|| .+.. --+.++.+|.++-... ++ .++-.+..||+
T Consensus 103 ~~l~~a~~wL~~~Q~-~dG~f~e~~--~~~~--~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~-~~~~~~~~~~i~rA~ 176 (297)
T cd02896 103 NVICGSVNWLISNQK-PDGSFQEPS--PVIH--REMTGGVEGSEGDVSLTAFVLIALQEARSIC-PPEVQNLDQSIRKAI 176 (297)
T ss_pred HHHHHHHHHHHhcCC-CCCeeCCCC--CccC--hhccCCccccCCCccchHHHHHHHHhhhccc-cccchhhHHHHHHHH
Confidence 466779999999999 999997432 1111 1222222 1222 2577788888887665 42 24555666777
Q ss_pred hcccc
Q psy7540 199 KVFKL 203 (578)
Q Consensus 199 ~~f~~ 203 (578)
+.+..
T Consensus 177 ~yL~~ 181 (297)
T cd02896 177 SYLEN 181 (297)
T ss_pred HHHHH
Confidence 76653
No 71
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=33.99 E-value=3.8e+02 Score=26.00 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhc
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKV 200 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~ 200 (578)
.+..+....+.+||.+.|. ++|+|...-.. .-+..|.+ ..++..|..+-... +..-+...+++++
T Consensus 48 ~~~~~~~~~~~~~l~~~q~-~dG~~~~~~~~-------~~~~~~~T----~~~~~~l~~~~~~~---~~~~~~~~~~~~~ 112 (300)
T cd00688 48 DKADENIEKGIQRLLSYQL-SDGGFSGWGGN-------DYPSLWLT----AYALKALLLAGDYI---AVDRIDLARALNW 112 (300)
T ss_pred ccchHHHHHHHHHHHhccC-CCCCccCCCCC-------CCcchHhH----HHHHHHHHHcCCcc---ccCHHHHHHHHHH
Confidence 4677889999999999999 99999754211 02334555 33444444433221 2344556666666
Q ss_pred cccc-ccCCCee
Q psy7540 201 FKLP-IYKGGVQ 211 (578)
Q Consensus 201 f~~p-~~~GGvl 211 (578)
+... ..+||+.
T Consensus 113 l~~~q~~dG~~~ 124 (300)
T cd00688 113 LLSLQNEDGGFR 124 (300)
T ss_pred HHHccCCCCCee
Confidence 6544 3455543
No 72
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=28.60 E-value=1.7e+02 Score=24.37 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=27.9
Q ss_pred eEEEcCCccce---EEEEEEEEecCccEEEEEEecccCceEEEEEEe
Q psy7540 4 VSLKLNHGSDF---ILGVTLSILSNSSLSVALENSELQEMWRLHYVC 47 (578)
Q Consensus 4 ~~~~l~~~~d~---~~s~~~~~~~~~s~~v~~~~~~~~~~~~~hy~~ 47 (578)
|.+.|-++.-+ |.+|| .++|.++...+++++.=|=|+
T Consensus 18 Vti~L~nG~~l~G~I~~fD-------~ftVll~~~g~qqLIYKhAIS 57 (61)
T TIGR02383 18 VTVFLVNGVQLKGVIESFD-------NFTVLLESQGKQQLIYKHAIS 57 (61)
T ss_pred EEEEEeCCcEEEEEEEEEe-------eeEEEEEECCcEEEEEEEEEE
Confidence 66677777654 88898 799999998887777666554
No 73
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=28.45 E-value=1.5e+02 Score=24.60 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.0
Q ss_pred eEEEcCCccce---EEEEEEEEecCccEEEEEEecccCceEEEEEEe
Q psy7540 4 VSLKLNHGSDF---ILGVTLSILSNSSLSVALENSELQEMWRLHYVC 47 (578)
Q Consensus 4 ~~~~l~~~~d~---~~s~~~~~~~~~s~~v~~~~~~~~~~~~~hy~~ 47 (578)
|.+.|-|+.-+ |.+|| .++|.++..++++++.=|=|+
T Consensus 14 Vtv~L~NG~~l~G~I~~fD-------~ftVll~~~g~qqLIYKhAIS 53 (61)
T cd01716 14 VTIYLVNGVQLKGQIESFD-------NFTVLLESDGKQQLVYKHAIS 53 (61)
T ss_pred EEEEEeCCcEEEEEEEEEc-------ceEEEEEECCcEEEEEeeeeE
Confidence 56677777655 88888 799999998888777666543
No 74
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=26.88 E-value=3e+02 Score=27.66 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALR 196 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~k 196 (578)
.+..++...+..+|++.|. +||||...- + .+-+.+|.++ .++-+|.+|-+.-.-++.-++.|.+
T Consensus 45 ~~~~~~i~~~~~~l~~~Q~-~dGgf~~w~------~-~~~~~~~~Ta----~~~~~L~~a~~~~~v~~~~i~ra~~ 108 (282)
T cd02891 45 EKALEYIRKGYQRLLTYQR-SDGSFSAWG------N-SDSGSTWLTA----YVVKFLSQARKYIDVDENVLARALG 108 (282)
T ss_pred HHHHHHHHHHHHHHHhhcC-CCCCccccC------C-CCCCchHHHH----HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4678888899999999999 999996552 1 1136779884 4566777775532134434444443
No 75
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=26.33 E-value=57 Score=33.03 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhhcCCChhHHHHHHHhhhccc
Q psy7540 407 QGHAISVLSRAYYHSGGNVTYLNTALRALKVFK 439 (578)
Q Consensus 407 QG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~ 439 (578)
-+.++-.|+.||..| ||++|.+.|.+.|+.+.
T Consensus 58 ~a~a~~~lAlay~~T-gd~~YA~~a~~iL~~W~ 89 (272)
T PF05426_consen 58 DADAAYALALAYYLT-GDEKYADKAAEILNAWA 89 (272)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 356778999999988 79999999999999874
No 76
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=25.75 E-value=2.4e+02 Score=30.96 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhc
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKV 200 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~ 200 (578)
-+..+.+.++++=|++.|| ++|-|---.+. + .+-+|.-+=|-..-+..|+++=++-=-+++|-.+|+||++-
T Consensus 228 ~~l~~~l~d~v~al~r~Qd-e~GlW~tiLDd----~---~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~a 299 (357)
T COG4225 228 RELLNVLRDLVDALIRYQD-ESGLWHTILDD----G---RPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDA 299 (357)
T ss_pred HHHHHHHHHHHHHHHHhhc-cccchhhhhcc----C---CCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence 5678999999999999999 99999533322 1 23334333333333444555544432367788999999987
Q ss_pred ccccccCCCeee------eecCCcceeec-CCCCC
Q psy7540 201 FKLPIYKGGVQS------KFLDKFPWYEE-YPTTP 228 (578)
Q Consensus 201 f~~p~~~GGvl~------~~~~~~~wyeE-Ypt~p 228 (578)
..-.+.+-|.+. .|..+..+|-. ||+.|
T Consensus 300 Ll~~i~~~g~~g~vs~~~~~~~~~~g~~~~~~~~~ 334 (357)
T COG4225 300 LLGHIDEEGEVGGVSLGTIVGHDLDGYRDYYPSRP 334 (357)
T ss_pred HHhhcccccccceeecCcccccccccccccccCcc
Confidence 766654444332 23344566666 66654
No 77
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=22.97 E-value=7.9e+02 Score=28.54 Aligned_cols=136 Identities=13% Similarity=0.203 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCC-Cchhhhh-hhHHHHHHHHHHHhcCCChh----HHHHHHHH
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKP-GWYSAMG-QGHAISVLSRAYYHSGGNVT----YLNTALRA 197 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~-gW~SaMa-QG~aiSvL~RAY~~t~gD~k----YL~aA~ka 197 (578)
.+..+...+||.+.|. ++|.|+-.+. + .| ...| +|---+. -|..|-.+.+.+..| +|.. +....++|
T Consensus 313 ~~~a~~~l~~l~~~q~-~~G~~~~~~~--~-dG--~~~~~~~~~Q~D~~g~~l~al~~y~~~t-~d~~~~~~~~~~v~~a 385 (616)
T TIGR01577 313 HDRVDRFFRWAMQTQS-RDGSWQQRYY--L-NG--RLAPLQWGLQIDETGSILWAMDQHYRLT-NDRAFLEEIWESVQKA 385 (616)
T ss_pred HHHHHHHHHHHHHhhC-cCCCcceEEe--c-CC--CCCCCCCCccccchhHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 4455566899999999 9999965542 2 22 1122 1211111 344565666778899 8764 44566778
Q ss_pred hhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhcc
Q psy7540 198 LKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLN 274 (578)
Q Consensus 198 l~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp 274 (578)
++........|+.+ . +..+|=|.. ....++.==...+|...-++.+..+++. ..+-+.+-...+++.+-
T Consensus 386 ~~fl~~~~~~~l~~-~--~~~lWEer~--G~~~~t~a~~~aAL~~aa~lA~~lGd~~---~a~~~~~~Ad~ik~~i~ 454 (616)
T TIGR01577 386 AQYLILFIDPETPL-P--CRDLWEERE--GVFTYTASAVYGGLDAAAAVADKLGEKR---LAQNWKKAAEFIKRAVE 454 (616)
T ss_pred HHHHHHhccCCCCC-C--CCccceecC--CccCccHHHHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHH
Confidence 87766555444332 2 234773322 2334442223344555555555566541 22334555555555443
No 78
>PLN03009 cellulase
Probab=21.73 E-value=2.2e+02 Score=32.48 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccc-----ccc---cccCCCCCCCCc-------hhhhhhhHHHHHHHHHHHhcC
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPV-----RRR---ITAGIGDLKPGW-------YSAMGQGHAISVLSRAYYHSG 185 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~-----~~~---~~~~~~~L~~gW-------~SaMaQG~aiSvL~RAY~~t~ 185 (578)
+..++..+=..|||++=|+ ++|+.-..+ ++. ..+....-++-. -|..+ |....+|+.|+.++
T Consensus 113 ~diLdeikw~~D~llkm~~-~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a-~~~AAalA~as~vf- 189 (495)
T PLN03009 113 RNSLVAIRWATDYLLKTVS-QPNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVA-GETAAALAASSMAF- 189 (495)
T ss_pred HHHHHHHHHHHHHHHHccc-CcCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHH-HHHHHHHHHHHHhc-
Confidence 6678888899999999876 443321111 110 000000001111 13334 99999999999999
Q ss_pred C--ChhH----HHHHHHHhhcccccccCCCeeeee----cCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH
Q psy7540 186 G--NVTY----LNTALRALKVFKLPIYKGGVQSKF----LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ 255 (578)
Q Consensus 186 g--D~kY----L~aA~kal~~f~~p~~~GGvl~~~----~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~ 255 (578)
+ |+.| |++|+++.+.-.... |.-... .+...+| +. .+-.-.=+..+-.-||. .|+|+.+
T Consensus 190 k~~D~~YA~~ll~~Ak~ly~~a~~~~---g~y~~~~~~~~g~~~~Y---~~--~s~~~DE~~WAAawLy~---aTgd~~Y 258 (495)
T PLN03009 190 RSSDPGYSETLLRNAIKTFQFADMYR---GAYSDNDDIKDGVCPFY---CD--FDGYQDELLWGAAWLRR---ASGDDSY 258 (495)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHcC---CCccCCccccCccccCc---CC--cccccHHHHHHHHHHHH---HhCCHHH
Confidence 5 5554 999999998887643 111110 0111222 21 11133556677777776 8887643
No 79
>COG1923 Hfq Uncharacterized host factor I protein [General function prediction only]
Probab=21.29 E-value=2.1e+02 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=27.8
Q ss_pred eEEEcCCccce---EEEEEEEEecCccEEEEEEecccCceEEEEEEe
Q psy7540 4 VSLKLNHGSDF---ILGVTLSILSNSSLSVALENSELQEMWRLHYVC 47 (578)
Q Consensus 4 ~~~~l~~~~d~---~~s~~~~~~~~~s~~v~~~~~~~~~~~~~hy~~ 47 (578)
|++.|-|+.-+ |-||| +++|.|++..+++++.=|=|+
T Consensus 22 VtIfLvNG~~L~G~V~sfD-------~f~VlL~~~g~qqlVYKHAIS 61 (77)
T COG1923 22 VTIFLVNGFKLQGQVESFD-------NFVVLLKNTGKQQLVYKHAIS 61 (77)
T ss_pred EEEEEEcCEEEEEEEEeee-------eEEEEEEcCCeeEEEEeeeee
Confidence 56666666533 77887 799999999898888766543
No 80
>KOG2431|consensus
Probab=20.66 E-value=1.9e+02 Score=32.63 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=70.2
Q ss_pred CceEEEEeeecc-ccccccccCc-hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHH
Q psy7540 99 KFKVTHIHLYGS-GSIDNLTLST-SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISV 176 (578)
Q Consensus 99 ~~~~~~i~~~g~-g~~~n~~l~~-~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSv 176 (578)
++++...|-+-+ |.++-+.|+. +-++++..+..|.|+.-.. ..-..|+. +-.++++ ...+|.|-++=+-.+.-++
T Consensus 170 ~VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~-sps~IPys-dVnL~~~-~A~~p~~~~~SStaEvtti 246 (546)
T KOG2431|consen 170 DVNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFS-SPSPIPYS-DVNLGTG-TAHPPRWTGDSSTAEVTTI 246 (546)
T ss_pred ceehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhc-CCCCCCcc-eeecCCC-cccCCCCCCccchhhheee
Confidence 466667777777 5679999987 5679999999999998886 44445433 2235555 4668999544333333332
Q ss_pred ---HHHHHHhcCCChhHHHHHHHHhhccccc
Q psy7540 177 ---LSRAYYHSGGNVTYLNTALRALKVFKLP 204 (578)
Q Consensus 177 ---L~RAY~~t~gD~kYL~aA~kal~~f~~p 204 (578)
|--.-.+| ||++|-+.|.|+.+.....
T Consensus 247 QlEfr~Ls~lt-gd~kY~~~a~kv~ehih~~ 276 (546)
T KOG2431|consen 247 QLEFRYLSRLT-GDPKYEELAEKVTEHIHGL 276 (546)
T ss_pred eeeHHHHHhhc-CCchHHHHHHHHHHHHhcc
Confidence 22234679 9999999999998866544
Done!