Query psy7540
Match_columns 578
No_of_seqs 187 out of 220
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 21:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gz6_A N-acetyl-D-glucosamine 98.9 5.8E-08 2E-12 100.7 20.2 352 121-543 10-375 (388)
2 2gz6_A N-acetyl-D-glucosamine 98.7 7.3E-07 2.5E-11 92.4 18.3 255 119-439 71-337 (388)
3 3gt5_A N-acetylglucosamine 2-e 98.6 1.5E-05 5.1E-10 84.0 26.1 354 124-543 12-381 (402)
4 1fp3_A N-acyl-D-glucosamine 2- 98.3 0.00015 5E-09 75.8 25.6 347 122-542 14-384 (402)
5 2zbl_A Putative isomerase; N-a 98.3 0.0001 3.5E-09 78.1 24.2 312 124-572 14-350 (421)
6 3gt5_A N-acetylglucosamine 2-e 97.9 0.00029 9.9E-09 74.2 18.3 269 119-448 69-355 (402)
7 3pmm_A Putative cytoplasmic pr 97.9 8.5E-05 2.9E-09 78.4 12.5 284 119-448 23-339 (382)
8 2zbl_A Putative isomerase; N-a 97.9 9.8E-05 3.4E-09 78.2 12.9 133 118-264 66-203 (421)
9 1nc5_A Hypothetical protein YT 97.6 0.00017 5.7E-09 75.5 9.2 204 169-439 42-251 (373)
10 1fp3_A N-acyl-D-glucosamine 2- 97.5 0.00043 1.5E-08 72.2 11.3 79 119-203 76-156 (402)
11 2ahf_A Unsaturated glucuronyl 97.5 0.0056 1.9E-07 64.7 19.0 290 170-533 44-343 (377)
12 2zzr_A Unsaturated glucuronyl 97.1 0.006 2E-07 65.0 15.1 213 177-449 123-359 (397)
13 2ahf_A Unsaturated glucuronyl 96.8 0.0078 2.7E-07 63.6 11.9 195 115-327 100-311 (377)
14 3k7x_A LIN0763 protein; Q92DQ0 96.7 0.009 3.1E-07 62.2 11.6 176 113-327 56-239 (349)
15 2zzr_A Unsaturated glucuronyl 96.7 0.0095 3.2E-07 63.5 11.7 195 115-328 126-337 (397)
16 3k11_A Putative glycosyl hydro 96.6 0.0011 3.7E-08 71.7 4.2 136 168-327 82-230 (445)
17 1gxm_A Pectate lyase; mechanis 96.6 0.019 6.5E-07 59.8 13.1 196 128-335 34-251 (332)
18 1r76_A Pectate lyase; A-helica 96.4 0.011 3.8E-07 63.1 10.5 169 125-299 81-283 (408)
19 3k7x_A LIN0763 protein; Q92DQ0 96.1 0.026 9.1E-07 58.7 10.8 144 408-570 95-245 (349)
20 3h7l_A Endoglucanase; dehydrog 95.5 0.16 5.6E-06 56.6 14.9 174 122-330 191-392 (586)
21 1nc5_A Hypothetical protein YT 95.2 0.078 2.7E-06 55.2 10.4 160 109-282 93-262 (373)
22 3pmm_A Putative cytoplasmic pr 93.3 0.21 7.1E-06 52.6 8.7 84 176-268 118-205 (382)
23 1x9d_A Endoplasmic reticulum m 87.3 1.7 5.7E-05 48.1 9.2 154 108-274 173-338 (538)
24 3k11_A Putative glycosyl hydro 87.2 1 3.6E-05 48.5 7.4 84 121-214 290-375 (445)
25 1gxm_A Pectate lyase; mechanis 86.0 1.5 5.2E-05 45.6 7.6 90 120-214 92-192 (332)
26 1nxc_A Mannosyl-oligosaccharid 85.7 3 0.0001 45.4 10.1 153 108-274 109-274 (478)
27 3gzk_A Cellulase; fold from GH 85.5 3.2 0.00011 45.7 10.3 129 121-262 188-333 (537)
28 3e6u_A LANC-like protein 1; al 83.3 2.4 8.3E-05 44.7 7.9 114 120-262 249-364 (411)
29 1dl2_A Class I alpha-1,2-manno 82.2 1.6 5.3E-05 48.0 6.0 152 107-274 102-276 (511)
30 1w6k_A Lanosterol synthase; cy 81.6 10 0.00035 43.1 12.7 143 121-273 405-571 (732)
31 1r76_A Pectate lyase; A-helica 80.7 3.1 0.00011 44.4 7.5 87 121-213 171-267 (408)
32 2ri9_A Mannosyl-oligosaccharid 79.7 6.9 0.00024 42.5 10.0 152 106-275 89-269 (475)
33 1hcu_A Alpha-1,2-mannosidase; 76.9 9.2 0.00032 41.8 10.0 151 108-275 104-282 (503)
34 2g0d_A Nisin biosynthesis prot 75.0 5.5 0.00019 41.2 7.3 80 120-202 225-312 (409)
35 2g0d_A Nisin biosynthesis prot 62.5 88 0.003 32.0 13.3 178 120-328 152-352 (409)
36 3e6u_A LANC-like protein 1; al 57.6 12 0.00042 39.2 5.8 133 166-330 227-364 (411)
37 1clc_A Endoglucanase CELD; EC: 54.6 32 0.0011 38.5 8.9 123 121-256 232-370 (639)
38 1ut9_A Cellulose 1,4-beta-cell 53.5 29 0.00099 38.6 8.2 82 121-204 227-329 (609)
39 1nxc_A Mannosyl-oligosaccharid 48.4 25 0.00086 38.2 6.5 88 413-511 181-274 (478)
40 1w6k_A Lanosterol synthase; cy 43.6 78 0.0027 35.9 9.8 85 122-209 478-576 (732)
41 2sqc_A Squalene-hopene cyclase 41.8 30 0.001 38.4 6.0 108 124-248 513-626 (631)
42 1ks8_A Endo-B-1,4-glucanase; c 35.6 68 0.0023 34.1 7.3 116 121-256 90-232 (433)
43 1ia6_A Cellulase CEL9M; cellul 34.7 89 0.0031 33.3 8.1 118 121-256 92-230 (441)
44 1hzf_A Complement factor C4A; 34.1 59 0.002 33.4 6.4 73 124-202 141-224 (367)
45 1hcu_A Alpha-1,2-mannosidase; 33.8 70 0.0024 34.9 7.1 88 413-511 184-281 (503)
46 1ut9_A Cellulose 1,4-beta-cell 33.4 66 0.0022 35.8 7.0 75 122-203 434-509 (609)
47 4acq_A Alpha-2-macroglobulin; 32.0 2E+02 0.0068 35.3 11.4 70 123-204 981-1050(1451)
48 2sqc_A Squalene-hopene cyclase 30.2 48 0.0016 36.8 5.2 87 124-212 330-419 (631)
49 3gzk_A Cellulase; fold from GH 30.2 50 0.0017 36.2 5.3 70 122-203 369-440 (537)
50 1x9d_A Endoplasmic reticulum m 30.2 70 0.0024 35.3 6.4 89 413-511 243-338 (538)
51 1ks8_A Endo-B-1,4-glucanase; c 26.6 1.1E+02 0.0038 32.4 7.1 70 120-203 270-340 (433)
52 1wgn_A UBAP1, ubiquitin associ 26.0 30 0.001 27.7 1.8 16 128-143 48-63 (63)
53 3a0o_A Oligo alginate lyase; a 24.5 45 0.0016 37.6 3.8 38 162-200 196-237 (776)
54 1qaz_A Protein (alginate lyase 24.4 47 0.0016 34.6 3.6 28 173-201 90-117 (351)
55 1tf4_A T. fusca endo/EXO-cellu 24.1 1.5E+02 0.0052 32.9 7.8 116 121-255 91-232 (605)
56 1hzf_A Complement factor C4A; 24.0 2.4E+02 0.0082 28.7 8.8 74 121-210 87-161 (367)
57 3h7l_A Endoglucanase; dehydrog 20.5 4.2E+02 0.014 29.4 10.3 120 121-267 274-397 (586)
58 3nnb_A Alginate lyase; structu 20.2 65 0.0022 33.9 3.7 35 169-204 103-138 (382)
59 2xfg_A Endoglucanase 1; hydrol 20.2 1.9E+02 0.0064 31.1 7.3 121 121-255 112-252 (466)
No 1
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=98.92 E-value=5.8e-08 Score=100.66 Aligned_cols=352 Identities=11% Similarity=0.017 Sum_probs=191.3
Q ss_pred hHHHHHHH-HHHHHH-HhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHh-cCCChhHHHHHHHH
Q psy7540 121 SDHMAQFY-ATAEWL-VNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYH-SGGNVTYLNTALRA 197 (578)
Q Consensus 121 ~~~~~~F~-~aAdWL-l~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~-t~gD~kYL~aA~ka 197 (578)
++.++.+. +...+. ..-+|+ .||+...++. ++ ...+. =-..+.||+.|.++++||++ | +++.|+++|+++
T Consensus 10 ~~~~~~l~~~~l~fw~~~~~D~-~GGf~~~~~~---d~-~~~~~-eK~l~~nar~i~~~a~a~~~~~-~~~~~~~~A~~~ 82 (388)
T 2gz6_A 10 QLYKNALLNDVLPFWENHSLDS-EGGYFTCLDR---QG-KVYDT-DKFIWLQNRQVWTFSMLCNQLE-KRENWLKIARNG 82 (388)
T ss_dssp HHHHHHHHHTHHHHHHHHCBCT-TSSBCCEEBT---TS-CEEEC-CEEHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHhcCCCC-CCCEEeEECC---CC-CcCCc-chhHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 34445553 355554 556684 7786433322 11 11111 26788999999999999999 9 999999999999
Q ss_pred hhccccc--ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHHHHHHHhhhcc
Q psy7540 198 LKVFKLP--IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQGITSLKRMLN 274 (578)
Q Consensus 198 l~~f~~p--~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~Gi~SLk~~Lp 274 (578)
++..... .++||+......+..... ..-.+-+.-|.+.||-+++++|+++.+ +.|.++++. +...+
T Consensus 83 ~~~l~~~~~~~~Gg~~~~~d~dg~~~~------~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~----i~~~~- 151 (388)
T 2gz6_A 83 AKFLAQHGRDDEGNWYFALTRGGEPLV------QPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNN----VLRRK- 151 (388)
T ss_dssp HHHHHHHSBCTTSCBCSEECTTSCBCC------CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHTC--
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCccc------CCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HHHHh-
Confidence 9987765 236887655422222111 123456777889999999999998743 345555543 22222
Q ss_pred Ccc-CCCcc-eecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCCcccChhhHHhhhhhcc
Q psy7540 275 MYD-TGSGS-SYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHY 352 (578)
Q Consensus 275 ~yD-~g~wS-~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y 352 (578)
.| .|.|. .++- ..+. .+.+-+..=+.-|..|+.+|+|+.+++.|++...... .++
T Consensus 152 -~d~~g~~~~~~~~------~~~~-~~~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~---------------~~~ 208 (388)
T 2gz6_A 152 -DNPKGKYTKTYPG------TRPM-KALAVPMILANLTLEMEWLLPQETLENVLAATVQEVM---------------GDF 208 (388)
T ss_dssp --------------------CCCC-EETHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHH---------------HTT
T ss_pred -cCCCcccCcccCC------CCCC-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHH
Confidence 12 23221 1110 1111 1234455555667889999999988887774333322 222
Q ss_pred ccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCCChhHHHHHH
Q psy7540 353 SKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTAL 432 (578)
Q Consensus 353 ~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~ 432 (578)
-. ++.. .+.+ ....+|-. .+... .+. ..| | .+..++-+|.|++..| ||++|++.|+
T Consensus 209 ~~----~~~g-~~~e---~~~~~w~~--~~~~~---~~~------~~p--g--h~~e~a~lL~~~~~~t-gd~~~~~~A~ 264 (388)
T 2gz6_A 209 LD----QEQG-LMYE---NVAPDGSH--IDCFE---GRL------INP--G--HGIEAMWFIMDIARRK-NDSKTINQAV 264 (388)
T ss_dssp EE----TTTT-EECS---EECTTSCC--CCSTT---TTE------ECH--H--HHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred hc----cCCC-eEEE---EECCCCCC--CCCcc---cCc------CCC--C--HHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 11 1111 1111 11224521 11110 110 001 0 1234556899999988 7999999999
Q ss_pred Hhhhccc---ccccCCCceeec-cCCCceEeeCCCCCCceeehhHHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHH
Q psy7540 433 RALKVFK---LPIYKGGVQSKF-LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKR 508 (578)
Q Consensus 433 kal~~f~---~p~~~GGv~~~~-~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~ 508 (578)
+.++.+. +..+.||+.... .++.+ .+.|. ...-..=++--++.|+..++++++++ +-.+.+++..+-+.+
T Consensus 265 ~~~~~~~~~g~d~~~Gg~~~~~~~~g~~-~~~~~--~~~~~~W~qae~i~a~~~ly~~tgd~---~yl~~a~~~~~~~~~ 338 (388)
T 2gz6_A 265 DVVLNILNFAWDNEYGGLYYFMDAAGHP-PQQLE--WDQKLWWVHLESLVALAMGYRLTGRD---ACWAWYQKMHDYSWQ 338 (388)
T ss_dssp HHHHHHHHHHBCTTTCSBCSCEETTSCC-CSCTT--TTCEEHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCEEEeecCCCCc-cccCc--CCCcCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence 9988774 222336665321 11111 01111 01222235667888888888888765 344456666666667
Q ss_pred HhccccCCCcccccccccccC--CCCCCCCCChHHHH
Q psy7540 509 MLNMYDTGSGSSYDLRHISLG--IAPKIARCDYHATH 543 (578)
Q Consensus 509 ~Lp~yD~G~wS~Ydl~h~~~~--~~p~~A~~~YH~lH 543 (578)
.++.-..|.|-.+--++.... .++......||..-
T Consensus 339 ~~~D~~~G~w~~~l~~~g~~~~~~~~~~~K~~YH~~~ 375 (388)
T 2gz6_A 339 HFADPEYGEWFGYLNRRGEVLLNLKGGKWKGCFHVPR 375 (388)
T ss_dssp HHBCTTTSSBCCEECTTSCBSSCBSCCSSCSSSHHHH
T ss_pred hCcCCCCCceEEeeCCCcCCCCcCCCCCCCCCcchHH
Confidence 776555676655433333211 12233347899753
No 2
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=98.66 E-value=7.3e-07 Score=92.39 Aligned_cols=255 Identities=15% Similarity=0.109 Sum_probs=143.4
Q ss_pred CchHHHHHHHHHHHHHHhcC-CCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy7540 119 STSDHMAQFYATAEWLVNHQ-DPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRA 197 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~q-d~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~ka 197 (578)
.++++++....+++||+++. + ++|+|...+++ ++ +.+.. -.....|+.+|..|+.+|+.| +|++||+.|+++
T Consensus 71 ~~~~~~~~A~~~~~~l~~~~~~-~~Gg~~~~~d~---dg-~~~~~-~~~~~~~af~i~al~~~y~~t-g~~~~l~~A~~~ 143 (388)
T 2gz6_A 71 KRENWLKIARNGAKFLAQHGRD-DEGNWYFALTR---GG-EPLVQ-PYNIFSDCFAAMAFSQYALAS-GEEWAKDVAMQA 143 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHHSBC-TTSCBCSEECT---TS-CBCCC-CCCHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcC---CC-CcccC-CcchHHHHHHHHHHHHHHHHh-CCHHHHHHHHHH
Confidence 35789999999999999995 6 67888655543 22 11111 234457999999999999999 999999999999
Q ss_pred hhcccccc-cCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH-HHHHHHHHHHHHHhhhcc-
Q psy7540 198 LKVFKLPI-YKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK-EALSLYDQGITSLKRMLN- 274 (578)
Q Consensus 198 l~~f~~p~-~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~-~A~~lf~~Gi~SLk~~Lp- 274 (578)
++.+.... +++|.... .++..++.--+|+.+..+.+|-.++++|+|+.+. .|.++.+ .+...+.
T Consensus 144 ~~~i~~~~~d~~g~~~~---------~~~~~~~~~~~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~----~~~~~~~~ 210 (388)
T 2gz6_A 144 YNNVLRRKDNPKGKYTK---------TYPGTRPMKALAVPMILANLTLEMEWLLPQETLENVLAATVQ----EVMGDFLD 210 (388)
T ss_dssp HHHHHTC-----------------------CCCCEETHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH----HHHHTTEE
T ss_pred HHHHHHHhcCCCcccCc---------ccCCCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHhc
Confidence 98776553 22343221 1221111123788888888888888899886432 3444433 3333322
Q ss_pred -------CccCCCcceecccccccCCCCCcCCCchhHH-HHHHHHHHHhhcCCccccccCcccccccCCCcccChhhHHh
Q psy7540 275 -------MYDTGSGSSYDLRHISLGIAPKIARCDYHAT-HVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQ 346 (578)
Q Consensus 275 -------~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~l-Hi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaq 346 (578)
.|-+.+|+. +. ......+.|. |.+ =+.+|..++.+|+|+.+.+.|++-.... .+
T Consensus 211 ~~~g~~~e~~~~~w~~--~~----~~~~~~~~pg-h~~e~a~lL~~~~~~tgd~~~~~~A~~~~~~~-----------~~ 272 (388)
T 2gz6_A 211 QEQGLMYENVAPDGSH--ID----CFEGRLINPG-HGIEAMWFIMDIARRKNDSKTINQAVDVVLNI-----------LN 272 (388)
T ss_dssp TTTTEECSEECTTSCC--CC----STTTTEECHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HH
T ss_pred cCCCeEEEEECCCCCC--CC----CcccCcCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------HH
Confidence 122223321 00 0001112221 322 3457889999999998887776322211 11
Q ss_pred hhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCCChh
Q psy7540 347 FGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVT 426 (578)
Q Consensus 347 ygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~ 426 (578)
+| .+.+..- ++ +.+-. .|.... .| . ...+.|+ .|.++|.-++.+|+.| ||++
T Consensus 273 ~g-------~d~~~Gg--~~--------~~~~~-~g~~~~-~~----~-~~~~~~W---~qae~i~a~~~ly~~t-gd~~ 324 (388)
T 2gz6_A 273 FA-------WDNEYGG--LY--------YFMDA-AGHPPQ-QL----E-WDQKLWW---VHLESLVALAMGYRLT-GRDA 324 (388)
T ss_dssp HH-------BCTTTCS--BC--------SCEET-TSCCCS-CT----T-TTCEEHH---HHHHHHHHHHHHHHHH-CCHH
T ss_pred Hh-------ccCCCCC--EE--------EeecC-CCCccc-cC----c-CCCcCcH---HHHHHHHHHHHHHHHh-CCHH
Confidence 11 1111000 00 00000 011100 00 0 0012333 7899999999999988 6999
Q ss_pred HHHHHHHhhhccc
Q psy7540 427 YLNTALRALKVFK 439 (578)
Q Consensus 427 YL~aA~kal~~f~ 439 (578)
|++.|+++.+.+.
T Consensus 325 yl~~a~~~~~~~~ 337 (388)
T 2gz6_A 325 CWAWYQKMHDYSW 337 (388)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888664
No 3
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=98.59 E-value=1.5e-05 Score=84.00 Aligned_cols=354 Identities=13% Similarity=0.025 Sum_probs=190.6
Q ss_pred HHHHHHHHHHH-HhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhccc
Q psy7540 124 MAQFYATAEWL-VNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFK 202 (578)
Q Consensus 124 ~~~F~~aAdWL-l~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~ 202 (578)
.+++.++..+- ..-+| +.||+...+++. + ...+..=-....||..|.+|++||+++ +++.|+++|+++++...
T Consensus 12 ~~~~~~~l~fw~~~~~D-~~GGf~~~l~~d---g-~~~~~~~k~l~~n~r~i~~~a~a~~~~-g~~~~l~~A~~~~~fl~ 85 (402)
T 3gt5_A 12 RTHISDTMAFYHPRCID-SAGGFFHYFRDD---G-SIYNATHRHLVSSTRFVFNYAMAYLQF-GTAEYLDAVHHGLSYVR 85 (402)
T ss_dssp HHHHHHHHHHHTTTTBC-TTSSBCCEECTT---S-CEEESSEEEHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-CCcCeeeEECCC---C-CCCCCCchhHHHHHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHH
Confidence 55666777754 45678 788885433331 1 111111245668999999999999999 99999999999998766
Q ss_pred cc--ccC-CCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHHHHHHHhhhccCccC
Q psy7540 203 LP--IYK-GGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQGITSLKRMLNMYDT 278 (578)
Q Consensus 203 ~p--~~~-GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~Gi~SLk~~Lp~yD~ 278 (578)
.. .++ ||+...+ .+..-. .....|-++-|+++||-++. .|+++.+ +.|.++++ .+...+ +|.
T Consensus 86 ~~~~d~~~Gg~~~~~-~dG~~~------~~~~~lyd~Af~i~al~~~~-~tgd~~~l~~A~~l~~----~i~~~f--~d~ 151 (402)
T 3gt5_A 86 DVHRNPATGGYAWTL-CDDRVE------DDTNHCYGLAFVMLAYSCGL-KVGIKQAREWMDETWC----LLERHF--WDA 151 (402)
T ss_dssp HTTBCTTTSCBCSEE-ETTEEE------ECCEEHHHHHHHHHHHHHHH-HTTCTTHHHHHHHHHH----HHHHHT--EET
T ss_pred HhCccCCCCcEEEEe-eCCCCC------cCCcchHHHHHHHHHHHHHH-HhCChhHHHHHHHHHH----HHHHHh--cCC
Confidence 54 123 7765443 222110 12356778889999999954 5887743 34555555 343332 233
Q ss_pred CCcceec-cc-ccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCCcccChhhHHhhhhhcccccc
Q psy7540 279 GSGSSYD-LR-HISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNL 356 (578)
Q Consensus 279 g~wS~Yd-l~-h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l 356 (578)
..+-+++ +. ...+ .|.. ...=|..-+.-+..|+.+|+|+.+++.|++...... +.|++|
T Consensus 152 ~~G~~~~~~~~~~~~--~~~~-~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~-~~f~~~--------------- 212 (402)
T 3gt5_A 152 EYGLYKDEADAQWNF--TRYR-GQNANMHMCEAMLAAYEASGEQRYLERALVLADRIT-RRQAAK--------------- 212 (402)
T ss_dssp TTTEECCEECTTCCB--CSCE-EHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-THHHHT---------------
T ss_pred cCCCchhhhCCCCCC--CCCC-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHhhCc---------------
Confidence 2222221 10 0000 0110 111122224458899999999999888874333322 111111
Q ss_pred CCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHH---HHHHHHHhhcCCChhHHHHHHH
Q psy7540 357 TEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAI---SVLSRAYYHSGGNVTYLNTALR 433 (578)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~ai---Svl~RAY~~t~gd~~YL~aA~k 433 (578)
+.. .+.| ....+|-... +..... ..+.+ .|+ +..-|+.| -+|.+++..+ ++++|++.|.+
T Consensus 213 ---~~g-~l~e---~~~~dw~~~~-~~~~~~----~~~~~--~~~--~~~pGH~iE~awlLl~~~~~~-~~~~~~~~A~~ 275 (402)
T 3gt5_A 213 ---ADG-LVWE---HYDMRWEVDW-DYNRDN----PKHLF--RPW--GFQPGHQTEWAKLLLILDRYI-EVEWLVPVARS 275 (402)
T ss_dssp ---TTT-SCCS---EECTTSCBCT-TTTTTS----TTCSS--SCS--SBCHHHHHHHHHHHHHHHHHC-CCTTHHHHHHH
T ss_pred ---cCC-eeEE---EECCCCCCcc-ccccCC----ccccc--CcC--CCCCChHHHHHHHHHHHHHhh-CcHHHHHHHHH
Confidence 111 1111 1112344321 100000 00000 111 13336644 5799999987 69999999998
Q ss_pred hhhccc---ccccCCCceeecc-CCCceEeeCCCCCCceeehhHHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHHH
Q psy7540 434 ALKVFK---LPIYKGGVQSKFL-DKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRM 509 (578)
Q Consensus 434 al~~f~---~p~~~GGv~~~~~-~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~ 509 (578)
.++.-. ...+.||+..... ++.+. .... ..=.+-=+++|+..++++++++ +..+.+++-..-.++.
T Consensus 276 l~~~~~~~gwd~~~Gg~~~~~d~~g~~~------~~~k-~~W~qaEal~a~l~ly~~tgd~---~yl~~a~~~~~~~~~~ 345 (402)
T 3gt5_A 276 LFDVAVARSWDAVRGGLCYGFAPDGTIC------DDDK-YFWVQAESLAAAALLATRSGDE---RYWQWYDRLWAYAWQH 345 (402)
T ss_dssp HHHHHHHHHBCTTTCSBCSEECTTSCEE------ECCE-EHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCcEEEEEcCCCCee------eCCc-ceeHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHh
Confidence 765432 2344678774321 22221 0111 1112344788888888888764 3444455555666777
Q ss_pred hccccCCCcccccccccccC--CCCCCCCCChHHHH
Q psy7540 510 LNMYDTGSGSSYDLRHISLG--IAPKIARCDYHATH 543 (578)
Q Consensus 510 Lp~yD~G~wS~Ydl~h~~~~--~~p~~A~~~YH~lH 543 (578)
+..-..|.|=.+=.+....- .+.+.-.++||..-
T Consensus 346 ~~D~~~G~W~~~l~~dg~~~~~~k~~~~K~~YH~~~ 381 (402)
T 3gt5_A 346 MVDHRYGAWYRLLDGDNRKYNDEKSPAGKTDYHTMG 381 (402)
T ss_dssp TBCTTTCSBCSEECTTSCBCCSCCBCTTCSSHHHHH
T ss_pred CcCCCCCeEEEEECCCCCCCCCCCCCCCCCCccHHH
Confidence 77667787766655544321 11112246799864
No 4
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=98.33 E-value=0.00015 Score=75.77 Aligned_cols=347 Identities=14% Similarity=0.065 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHH-hcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhc--CCChhHHHHHHHHh
Q psy7540 122 DHMAQFYATAEWLV-NHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHS--GGNVTYLNTALRAL 198 (578)
Q Consensus 122 ~~~~~F~~aAdWLl-~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t--~gD~kYL~aA~kal 198 (578)
+..+++.++..+.. .-.|+..||+.-.++. ++- ..+.+ ...+.||..|.++++||+++ .+++.|+++|++++
T Consensus 14 ~l~~~~~~~l~~w~~~~~D~~~GGf~~~~~~---dg~-~~~~~-k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~ 88 (402)
T 1fp3_A 14 RVGQELDRVMAFWLEHSHDREHGGFFTCLGR---DGR-VYDDL-KYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGG 88 (402)
T ss_dssp HHHHHHHHHHHHHHHHSBCTTTSSBCCCBCT---TSC-BSCCC-EEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCEeeEECC---CCC-CCCCc-cchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 34455567777777 5667678887443333 221 22333 77889999999999999984 38999999999999
Q ss_pred hccccc-cc-C-C-CeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHHHHHHHhhhc
Q psy7540 199 KVFKLP-IY-K-G-GVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQGITSLKRML 273 (578)
Q Consensus 199 ~~f~~p-~~-~-G-Gvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~Gi~SLk~~L 273 (578)
+.+... .. + | |+..... ..|-. + ....-|-+.-|.+.++=+++++|+++.+ +.|.++++.-+.-+..
T Consensus 89 ~fl~~~~~d~~gg~g~~~s~d--~dg~~--~--~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d-- 160 (402)
T 1fp3_A 89 EFLLRHARVAPPEKKCAFVLT--RDGRP--V--KVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRE-- 160 (402)
T ss_dssp HHHHHHTBSSTTSCCBCSEEC--TTSCE--E--ECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHhccCcCCCCceEEEEC--CCCCc--c--ccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc--
Confidence 988776 22 3 3 6553321 12210 0 0123455677888888888889998743 4677777754443220
Q ss_pred cCccCCCcceecccccccCCCCCcCCCchhHH--HH-HHHHH---HHhhcCCccccccCcccccccCCCcccChhhHHhh
Q psy7540 274 NMYDTGSGSSYDLRHISLGIAPKIARCDYHAT--HV-NQLLL---LATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQF 347 (578)
Q Consensus 274 p~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~l--Hi-~qL~~---L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqy 347 (578)
+ ..|.++.-+- +....... .. |. ..+.. ++.+++++ +.+.++ -
T Consensus 161 ~--~~G~f~~~~~--------~~~~~~~~-~~~m~~~~~~l~l~~l~~~~~~~-~~~~a~-------------------~ 209 (402)
T 1fp3_A 161 D--PSGLGRPQLP--------GAVASESM-AVPMMLLCLVEQLGEEDEELAGR-YAQLGH-------------------W 209 (402)
T ss_dssp C--GGGGCCCCCT--------TSCCEEET-HHHHHHHHHHHHHHTTCHHHHHH-THHHHH-------------------H
T ss_pred C--CCcccCcccc--------CccCCCCc-chHHHHHHHHHHHHHHHHhcCcH-HHHHHH-------------------H
Confidence 1 1233321110 00000111 21 22 22333 55667665 433222 1
Q ss_pred hhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHH---HHHHHHhhcCCC
Q psy7540 348 GLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAIS---VLSRAYYHSGGN 424 (578)
Q Consensus 348 gL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiS---vl~RAY~~t~gd 424 (578)
.+......+. ++.+ ++.+ ..-.+|-... ++ .+ .. +.=|+.|. +|.+|+..+ |+
T Consensus 210 ~~~~~~~~~~-~~~~-~~~e---~~d~dw~~~~-~~-~g---------~~-------~~pgh~ie~~wlL~~a~~~~-~~ 265 (402)
T 1fp3_A 210 CARRILQHVQ-RDGQ-AVLE---NVSEDGEELS-GC-LG---------RH-------QNPGHALEAGWFLLRHSSRS-GD 265 (402)
T ss_dssp HHHHHHTTEE-TTTT-EECS---EEETTSCBCC-HH-HH---------HE-------ECHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHhC-cCCC-eEEE---EECCCCCccC-CC-CC---------CC-------CCCCcHHHHHHHHHHHHHHc-CC
Confidence 1111111111 1111 1211 1112453210 00 00 00 12266565 799999988 69
Q ss_pred hhHHHHHHHhhhcc-c-cc--ccCCCceee-ccCCCceEeeCCCCCCceeehhHHHHHHHhHhhhhcCCcchhHHHHHHH
Q psy7540 425 VTYLNTALRALKVF-K-LP--IYKGGVQSK-FLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLY 499 (578)
Q Consensus 425 ~~YL~aA~kal~~f-~-~p--~~~GGv~~~-~~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~~~~~~~~A~~lF 499 (578)
+.|+++|+++++.. . .- .+.||+... ..++.+ ..+... .....=++--++.|+-++++++++.. -.+.+
T Consensus 266 ~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~--~~~l~d-~~~~~W~qaea~~a~l~ly~~tgd~~---yl~~a 339 (402)
T 1fp3_A 266 AKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLC--PTQLEW-AMKLWWPHSEAMIAFLMGYSESGDPA---LLRLF 339 (402)
T ss_dssp HHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCC--CSSTTT-TCEEHHHHHHHHHHHHHHHHHHCCHH---HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCc--cccCcC-CCcCcHHHHHHHHHHHHHHHHhCCHH---HHHHH
Confidence 99999999988776 2 11 122666632 112222 111111 22223345567888889999887753 33334
Q ss_pred HHHHHHHHHHhccccCCCcccccccccc--cCCCCCCCCCChHHH
Q psy7540 500 DQGITSLKRMLNMYDTGSGSSYDLRHIS--LGIAPKIARCDYHAT 542 (578)
Q Consensus 500 ~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~--~~~~p~~A~~~YH~l 542 (578)
.+-.+-+...++.-..|.|-.+--.... ...++....+.||..
T Consensus 340 ~~~~~~~~~~f~D~~~G~w~~~~~~~g~~~~~~k~~~~k~~yH~~ 384 (402)
T 1fp3_A 340 YQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGCFHVP 384 (402)
T ss_dssp HHHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSSCSSCCSSHHH
T ss_pred HHHHHHHHHhCcCCCCCceEeeECCCcCCCCCCCCCCCCCCCccH
Confidence 4445555555543334655433222211 122345567899973
No 5
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=98.31 E-value=0.0001 Score=78.07 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccc
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKL 203 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~ 203 (578)
.++.....+|-..-.|+. |+. .+++. + ...+..=...+.||..|.+|++||. + |++.|+++|+++++.+..
T Consensus 14 ~~~~~~ll~f~~~~~d~~--GF~-~ld~~---g-~~~~~~~k~~~~nar~i~~~a~a~~-~-g~~~~l~~A~~~~~fl~~ 84 (421)
T 2zbl_A 14 EQETDRIFNFGKNAVVPT--GFG-WLGNK---G-QIKEEMGTHLWITARMLHVYSVAAS-M-GRPGAYDLVDHGIKAMNG 84 (421)
T ss_dssp HHHHHHHHHHHGGGEETT--EEC-CBCTT---S-CBCGGGCEEHHHHHHHHHHHHHHHH-T-TCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcCCC--Ccc-eECCC---C-CCCCCchhhHHHHHHHHHHHHHHHH-c-CChhHHHHHHHHHHHHHH
Confidence 445555666666656733 442 33221 1 1122222788999999999999998 9 999999999999999887
Q ss_pred ccc---CCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCCC
Q psy7540 204 PIY---KGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGS 280 (578)
Q Consensus 204 p~~---~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~ 280 (578)
..- .||+.... +..|-. +. .-.|..+-|.+.++-+ +++|+++.. .+.-.+-+..+...+ .|...
T Consensus 85 ~~~D~~~GG~~~s~--d~dg~~--~~---~k~lyd~Af~i~al~~-~~~tg~~~~---l~~a~~~~~~l~~~~--~d~~~ 151 (421)
T 2zbl_A 85 ALRDKKYGGWYACV--NDQGVV--DA---SKQGYQHFFALLGAAS-AVTTGHPEA---RKLLDYTIEVIEKYF--WSEEE 151 (421)
T ss_dssp TTBCTTTSSBCSEE--ETTEEE--EC---CEEHHHHHHHHHHHHH-HHTTTCTTH---HHHHHHHHHHHHHHT--EETTT
T ss_pred hccCcCCCeEEEEe--CCCCCc--CC---chhHHHHHHHHHHHHH-HHHhCCccH---HHHHHHHHHHHHHHh--ccCCC
Confidence 632 27765332 223321 11 2567777788888888 688988743 233333333444432 33322
Q ss_pred cceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCCcccChhhHHhhhhhccccccCCCC
Q psy7540 281 GSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPE 360 (578)
Q Consensus 281 wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~ 360 (578)
+-+|+...- ..+.+.+
T Consensus 152 Ggf~~~~d~---d~~~~~~------------------------------------------------------------- 167 (421)
T 2zbl_A 152 QMCLESWDE---AFSQTED------------------------------------------------------------- 167 (421)
T ss_dssp TEECCEECT---TSCSBCS-------------------------------------------------------------
T ss_pred CCeeeeecC---CCCcccc-------------------------------------------------------------
Confidence 233332000 0000111
Q ss_pred CcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhcccc
Q psy7540 361 PKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKL 440 (578)
Q Consensus 361 ~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~ 440 (578)
+ ..|. +..+++..|+++|..| ||++|++.|.++++.+.-
T Consensus 168 ~-------------------------------------~~~n---~~m~~~~al~~l~~~t-gd~~~~~~A~~~~~~~~~ 206 (421)
T 2zbl_A 168 Y-------------------------------------RGGN---ANMHAVEAFLIVYDVT-HDKKWLDRALRIASVIIH 206 (421)
T ss_dssp C-------------------------------------EEHH---HHHHHHHHHHHHHHTT-CCTHHHHHHHHHHHHHCC
T ss_pred c-------------------------------------CCCc---HHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHH
Confidence 0 0011 2236688999999988 799999999999998764
Q ss_pred cc---cCCCceeeccCCCceEeeCCCCCCcee------ehhH-HHHHHHhHhhhhcCC---c----chhHHHHHHHHHHH
Q psy7540 441 PI---YKGGVQSKFLDKFPWYEEYPTTPAVFI------LNGF-IYSLFGLYDLVTLSP---R----SKQKEALSLYDQGI 503 (578)
Q Consensus 441 p~---~~GGv~~~~~~~~~wyeEYpt~p~s~V------LNGf-IysL~GLyD~~~~~~---~----~~~~~A~~lF~~Gl 503 (578)
-. ..|.+...|..+-.=..||+...+.-. ==|| |-+.++|-++.++++ + ...+.|.++|+..+
T Consensus 207 ~~~~~~~~~l~~~f~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~ 286 (421)
T 2zbl_A 207 DVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATI 286 (421)
T ss_dssp CCCGGGTTCCCCEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred HhccCCCCchhhhcCCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHH
Confidence 33 234444444222122345532211111 1265 455667888888772 3 34577888887554
Q ss_pred HHHHHHhccccCC--CcccccccccccCCCCCCCCCCh---HHHHHHHHHHHHhhcCChhhHHHHHHHHhhhhc
Q psy7540 504 TSLKRMLNMYDTG--SGSSYDLRHISLGIAPKIARCDY---HATHVNQLLLLATIEKDKIISDTGQRWAGYIQG 572 (578)
Q Consensus 504 ~sLk~~Lp~yD~G--~wS~Ydl~h~~~~~~p~~A~~~Y---H~lHi~qL~~L~~it~d~~f~~~a~rW~~Y~~~ 572 (578)
.. . +|.. .+-+|....- +.++ .+... |..=+.-+..|+.+|+|+.+.+.+++.-.|+..
T Consensus 287 ~~---g---~d~~~~GG~~~~~~~~--g~~~--~~~k~~w~~aea~~all~l~~~tgd~~yl~~a~~~~~~~~~ 350 (421)
T 2zbl_A 287 RD---A---WAPDGADGFVYSVDWD--GKPI--VRERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIK 350 (421)
T ss_dssp HH---H---BSCSSSSSBCSCBCTT--SCBS--CCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HH---h---cCCCCCCcEEEeecCC--CCcc--CCCcccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 32 2 4532 3444443311 2222 22333 455556777899999999999999998888753
No 6
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=97.94 E-value=0.00029 Score=74.19 Aligned_cols=269 Identities=10% Similarity=-0.008 Sum_probs=148.0
Q ss_pred CchHHHHHHHHHHHHHHhcC-CCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy7540 119 STSDHMAQFYATAEWLVNHQ-DPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRA 197 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~q-d~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~ka 197 (578)
..+++++....++++|.++. +++.|+|.-.+ + +|.. +..+ ...-+|+.+|-.|+- |..| +|++||+.|+++
T Consensus 69 g~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~-~---dG~~-~~~~-~~lyd~Af~i~al~~-~~~t-gd~~~l~~A~~l 140 (402)
T 3gt5_A 69 GTAEYLDAVHHGLSYVRDVHRNPATGGYAWTL-C---DDRV-EDDT-NHCYGLAFVMLAYSC-GLKV-GIKQAREWMDET 140 (402)
T ss_dssp CCHHHHHHHHHHHHHHHHTTBCTTTSCBCSEE-E---TTEE-EECC-EEHHHHHHHHHHHHH-HHHT-TCTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCccCCCCcEEEEe-e---CCCC-CcCC-cchHHHHHHHHHHHH-HHHh-CChhHHHHHHHH
Confidence 45889999999999999986 42348876544 2 2311 1111 446678888888888 6679 999999999999
Q ss_pred hhccccc---ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH-HHHHHHHHHHHHHh---
Q psy7540 198 LKVFKLP---IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK-EALSLYDQGITSLK--- 270 (578)
Q Consensus 198 l~~f~~p---~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~-~A~~lf~~Gi~SLk--- 270 (578)
++.+... .+.||+...+..+ |= . .+.-..|..|..+-.+-.+.++|+|+.+. .|.++.+.=+..+-
T Consensus 141 ~~~i~~~f~d~~~G~~~~~~~~~--~~---~--~~~~~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~~~f~~~~ 213 (402)
T 3gt5_A 141 WCLLERHFWDAEYGLYKDEADAQ--WN---F--TRYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQAAKA 213 (402)
T ss_dssp HHHHHHHTEETTTTEECCEECTT--CC---B--CSCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHhcCCcCCCchhhhCCC--CC---C--CCCCCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhCcc
Confidence 9876644 3345544333222 21 0 12225788877766666666699987543 45555553332221
Q ss_pred -hhccCccCCCcceecccccccCCCCCc-----CCCchhHHH-HHHHHHHHhhcCCccccccCcccccccCCCcccChhh
Q psy7540 271 -RMLNMYDTGSGSSYDLRHISLGIAPKI-----ARCDYHATH-VNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQ 343 (578)
Q Consensus 271 -~~Lp~yD~g~wS~Ydl~h~~~~~~pn~-----A~~~YH~lH-i~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~ 343 (578)
..|+.+-..+|+.- .. .-...+.++ ..| =|.+. ..+|..++.+++|+.+.+.|.+
T Consensus 214 ~g~l~e~~~~dw~~~-~~-~~~~~~~~~~~~~~~~p-GH~iE~awlLl~~~~~~~~~~~~~~A~~--------------- 275 (402)
T 3gt5_A 214 DGLVWEHYDMRWEVD-WD-YNRDNPKHLFRPWGFQP-GHQTEWAKLLLILDRYIEVEWLVPVARS--------------- 275 (402)
T ss_dssp TTSCCSEECTTSCBC-TT-TTTTSTTCSSSCSSBCH-HHHHHHHHHHHHHHHHCCCTTHHHHHHH---------------
T ss_pred CCeeEEEECCCCCCc-cc-cccCCcccccCcCCCCC-ChHHHHHHHHHHHHHhhCcHHHHHHHHH---------------
Confidence 12222222344421 10 000011111 122 34443 4567788889998887777764
Q ss_pred HHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCC
Q psy7540 344 IAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGG 423 (578)
Q Consensus 344 iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~g 423 (578)
++..++-+- .+.+..- ++. .++..|... + ..+.|+ .|+++|..++++|+.| |
T Consensus 276 l~~~~~~~g---wd~~~Gg--~~~---------~~d~~g~~~----~------~~k~~W---~qaEal~a~l~ly~~t-g 327 (402)
T 3gt5_A 276 LFDVAVARS---WDAVRGG--LCY---------GFAPDGTIC----D------DDKYFW---VQAESLAAAALLATRS-G 327 (402)
T ss_dssp HHHHHHHHH---BCTTTCS--BCS---------EECTTSCEE----E------CCEEHH---HHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHhc---ccCCCCc--EEE---------EEcCCCCee----e------CCccee---HHHHHHHHHHHHHHHh-C
Confidence 222222110 0101000 000 000001100 0 113344 3899999999999998 7
Q ss_pred ChhHHHHHHHhhhc---ccccccCCCce
Q psy7540 424 NVTYLNTALRALKV---FKLPIYKGGVQ 448 (578)
Q Consensus 424 d~~YL~aA~kal~~---f~~p~~~GGv~ 448 (578)
|++|++.|++..+. ..+..+.|+-.
T Consensus 328 d~~yl~~a~~~~~~~~~~~~D~~~G~W~ 355 (402)
T 3gt5_A 328 DERYWQWYDRLWAYAWQHMVDHRYGAWY 355 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHTBCTTTCSBC
T ss_pred CHHHHHHHHHHHHHHHHhCcCCCCCeEE
Confidence 99999999887543 33333444443
No 7
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=97.86 E-value=8.5e-05 Score=78.44 Aligned_cols=284 Identities=14% Similarity=0.089 Sum_probs=146.6
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCCcccccc--cccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q psy7540 119 STSDHMAQFYATAEWLVNHQDPKTGGWPNPVR--RRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALR 196 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~--~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~k 196 (578)
+.++..+....+.+-|++-.+ ++|.++..+. ..+ ++ +.+ +.|- -.+|..+..|.++|++| ||++|++.|++
T Consensus 23 ~~~~~~~~l~~~~~~l~~~~~-~~~~f~~~~~~~~~~-d~-k~~-~~W~--Wt~G~~~~gl~~~ye~T-gd~~y~~~a~~ 95 (382)
T 3pmm_A 23 ARSELQALIRNVTQNLVNIKD-ESGQFLLRLDDGRVI-DT-KGW-AGWE--WTHGVGLYGIYQYYQQT-GDIEMRDIIDR 95 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHCCC-TTCTTCEECTTSCEE-CS-SST-TSCS--HHHHHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccC-ccccccccCCccccc-cC-CCC-cCcc--ccHHHHHHHHHHHHHHH-CCHHHHHHHHH
Confidence 456788888889999977766 6676654432 112 11 222 2341 25799999999999999 99999999999
Q ss_pred HhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCc
Q psy7540 197 ALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMY 276 (578)
Q Consensus 197 al~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~y 276 (578)
.++.+. .+||.+.. +-.-.+..+|+-||+ +|+|+.+.++. .+-.+.|....|.-
T Consensus 96 ~~~~~~---~~~~~~~n-----------------~D~~~~~~~l~~lY~---~Tgd~~Yl~~a---~~~ad~L~~~~~r~ 149 (382)
T 3pmm_A 96 WFADRF---AEGATTKN-----------------VNTMAPFLTLAYRFE---ETGRMAYLPWL---ESWAEWAMHEMPRT 149 (382)
T ss_dssp HHHHHH---HHCCCCCC-----------------TTTTTTHHHHHHHHH---HHCCGGGHHHH---HHHHHHHHHTSCBC
T ss_pred HHHHHH---cCCCCcCc-----------------ccchHHHHHHHHHHH---HhCCHHHHHHH---HHHHHHHHhhCCCC
Confidence 888663 33443211 001133356666666 89998766653 33333555556644
Q ss_pred cCCCcceecccccccCCCCC--cCCCchhHHHHHHHHHHHhhcCCccccccCccc-ccc----cC-CCc-ccCh------
Q psy7540 277 DTGSGSSYDLRHISLGIAPK--IARCDYHATHVNQLLLLATIEKDKIISDTGVPV-TTQ----WD-PNG-YYYP------ 341 (578)
Q Consensus 277 D~g~wS~Ydl~h~~~~~~pn--~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW-~~q----~~-~~~-~y~p------ 341 (578)
..|......... ..++ +.+--| .-+-.|-+++.+|+|+.+.+.|.+= ... .. ..+ +|+.
T Consensus 150 ~~Ggf~~~~~~~----~~~~~~WiDgl~--M~~p~La~~~~~tgd~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~ 223 (382)
T 3pmm_A 150 EQGGMQHMTLAE----ENHQQMWDDTLM--MTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGR 223 (382)
T ss_dssp GGGCBCCCCSSC----CCTTEEETTHHH--HTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTT
T ss_pred cCCCeeeecCCC----CCCCcEEecchh--hhHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCC
Confidence 433322111000 0011 111112 2334678899999999988776421 000 00 011 2221
Q ss_pred -----------hhHHhhhhhccccc--cCCCCCcceeecccccccCCccccCC---CCCccccccccccccccccccccc
Q psy7540 342 -----------TQIAQFGLSHYSKN--LTEPEPKRTVLEDGDSIQGDWVVPNS---GGYAGRQYNQLVNSYVLNFHTSAM 405 (578)
Q Consensus 342 -----------~~iaqygL~~Y~k~--l~~~~~~~~~l~~~~~~~~~Wl~~~~---g~~~~~~y~~~~~~~~~~~w~SaM 405 (578)
..=+-+||.-.=++ +.+..++++.+.+....+++-+++.+ |-|. ...|... +| .-.||-
T Consensus 224 ~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~-~~~d~~~-~y---~EsSat 298 (382)
T 3pmm_A 224 HNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWH-TLLDDPH-SY---LEASAT 298 (382)
T ss_dssp BCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEE-SBTTCTT-SC---EEHHHH
T ss_pred CCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChh-hccCCCC-CC---ccccHH
Confidence 11122333322222 22222333222222233344444432 2221 1222211 11 122322
Q ss_pred chhhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCce
Q psy7540 406 GQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQ 448 (578)
Q Consensus 406 aQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~ 448 (578)
+..+.-|.++.++---+++|+.+|+||++...-.+.+-|.+
T Consensus 299 --A~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l 339 (382)
T 3pmm_A 299 --AGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGEL 339 (382)
T ss_dssp --HHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCB
T ss_pred --HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCE
Confidence 23345555666521115799999999999998778776765
No 8
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=97.85 E-value=9.8e-05 Score=78.24 Aligned_cols=133 Identities=12% Similarity=0.045 Sum_probs=92.1
Q ss_pred cCchHHHHHHHHHHHHHHhcC-CCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q psy7540 118 LSTSDHMAQFYATAEWLVNHQ-DPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALR 196 (578)
Q Consensus 118 l~~~~~~~~F~~aAdWLl~~q-d~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~k 196 (578)
...+++++....++++|.++. |+..|||...+++. +... . . --.-.|+..+..++. |+.| +++.|++.|++
T Consensus 66 ~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~d---g~~~-~-~-k~lyd~Af~i~al~~-~~~t-g~~~~l~~a~~ 137 (421)
T 2zbl_A 66 MGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQ---GVVD-A-S-KQGYQHFFALLGAAS-AVTT-GHPEARKLLDY 137 (421)
T ss_dssp TTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETT---EEEE-C-C-EEHHHHHHHHHHHHH-HHTT-TCTTHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCC---CCcC-C-c-hhHHHHHHHHHHHHH-HHHh-CCccHHHHHHH
Confidence 345789999999999999997 42358887655442 2111 1 1 344568888888888 9999 99999999999
Q ss_pred Hhhccccc---ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHH
Q psy7540 197 ALKVFKLP---IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQ 264 (578)
Q Consensus 197 al~~f~~p---~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~ 264 (578)
+++.+... .++||+......+ | +.....-..|+.|..+.+|-.+..+++++.+ +.|.++++.
T Consensus 138 ~~~~l~~~~~d~~~Ggf~~~~d~d--~----~~~~~~~~~n~~m~~~~al~~l~~~tgd~~~~~~A~~~~~~ 203 (421)
T 2zbl_A 138 TIEVIEKYFWSEEEQMCLESWDEA--F----SQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASV 203 (421)
T ss_dssp HHHHHHHHTEETTTTEECCEECTT--S----CSBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeeeeecCC--C----CcccccCCCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 98877653 3367776554222 2 0111234689998888888888889998754 346566553
No 9
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=97.57 E-value=0.00017 Score=75.54 Aligned_cols=204 Identities=15% Similarity=0.126 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhh
Q psy7540 169 GQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVT 248 (578)
Q Consensus 169 aQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~ 248 (578)
.+|..++.|.+||++| ||++|+++|+++++.+. .++|-+. +..+. .+.|+ +| .+++-||+
T Consensus 42 ~~G~~~~gl~~~y~~t-gd~~y~~~a~~~~~~~~---~~~g~l~-~~~~~--lDd~~--------~g--~~ll~lY~--- 101 (373)
T 1nc5_A 42 HQGVFLCGVLRLWEAT-GEKRYFEYAKAYADLLI---DDNGNLL-FRRDE--LDAIQ--------AG--LILFPLYE--- 101 (373)
T ss_dssp HHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHB---CTTCCBC-CCTTC--GGGTG--------GG--GGHHHHHH---
T ss_pred hHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHh---CCCCccc-CCCCC--cchHH--------HH--HHHHHHHH---
Confidence 5788999999999999 99999999999999875 2233222 21111 22222 22 34555555
Q ss_pred hCCCccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCC--cCCCchhHHHHHHHHHHHhhcCCccccccC
Q psy7540 249 LSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPK--IARCDYHATHVNQLLLLATIEKDKIISDTG 326 (578)
Q Consensus 249 ~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn--~A~~~YH~lHi~qL~~L~~it~D~~f~~~A 326 (578)
+|+|+.+.++. .+-.+.|.. .++++.+.++.-. ..|+ +.+.-| .-+-.|.+++.+|+|+.+.+.|
T Consensus 102 ~Tgd~~yl~~a---~~la~~l~~---~~r~~~G~fw~~~-----~~~~~~w~D~l~--m~~p~L~~l~~~tgd~~y~d~A 168 (373)
T 1nc5_A 102 QTKDERYVKAA---KRLRSLYGT---LNRTSEGGFWHKD-----GYPYQMWLDGLY--MGGPFALKYANLKQETELFDQV 168 (373)
T ss_dssp HHCCHHHHHHH---HHHHGGGGT---SCBCTTSCBCSCT-----TSTTEEETHHHH--HHHHHHHHHHHHHTCTHHHHHH
T ss_pred HhCCHHHHHHH---HHHHHHHHh---ccCCCCCCeeccC-----CCCCeEEeCcHH--HHHHHHHHHHHHHCCHHHHHHH
Confidence 89987544432 222223322 3455544443321 1111 111112 2355688999999999998888
Q ss_pred cccccccCCCcccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccc
Q psy7540 327 VPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMG 406 (578)
Q Consensus 327 ~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMa 406 (578)
.+=... +.+++-.++.. .++ -.|..+ +.-. +. |...+ +-..+|. =+
T Consensus 169 ~~~~~~-------------------~~~~l~D~~tG-l~~-------h~~~~~--~~~~-w~-d~~tg-~~~~~Wa--Rg 214 (373)
T 1nc5_A 169 VLQESL-------------------MRKHTKDAKTG-LFY-------HAWDEA--KKMP-WA-NEETG-CSPEFWA--RS 214 (373)
T ss_dssp HHHHHH-------------------HHHHHBCTTTS-CBC-------SEEETT--CCST-TS-CTTTC-BCSCCBH--HH
T ss_pred HHHHHH-------------------HHHHhcCCCCC-CEE-------eecCCc--cccc-cc-cccCC-CCCCccc--ch
Confidence 721111 11112222221 011 011111 0000 00 00001 1122453 35
Q ss_pred hhhHHHHHHHHHhhc----CCChhHHHHHHHhhhccc
Q psy7540 407 QGHAISVLSRAYYHS----GGNVTYLNTALRALKVFK 439 (578)
Q Consensus 407 QG~aiSvl~RAY~~t----~gd~~YL~aA~kal~~f~ 439 (578)
||-++--|++.+..+ +++++|++.+++.++.+.
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~ 251 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSIC 251 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHH
Confidence 677888899999873 247889999999888775
No 10
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=97.50 E-value=0.00043 Score=72.20 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHHHHHhcC-CCCCC-CcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q psy7540 119 STSDHMAQFYATAEWLVNHQ-DPKTG-GWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALR 196 (578)
Q Consensus 119 ~~~~~~~~F~~aAdWLl~~q-d~~~G-~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~k 196 (578)
..+++++....++++|.++. +++.| +|...+++. +- ... .-.-...|+..+..++.+|+.| +|++|++.|.+
T Consensus 76 ~~~~~l~~A~~~~~fl~~~~~d~~gg~g~~~s~d~d---g~-~~~-~~~~lyd~af~~~a~~~~~~at-gd~~~~~~A~~ 149 (402)
T 1fp3_A 76 HRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRD---GR-PVK-VQRSIFSECFYTMAMNELWRVT-AEARYQSEAVD 149 (402)
T ss_dssp CCHHHHHHHHHHHHHHHHHTBSSTTSCCBCSEECTT---SC-EEE-CCSSSHHHHHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCcCCCCceEEEECCC---CC-ccc-cccchHHHHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 46889999999999999995 62335 787555432 11 000 1123346888899999999999 99999999999
Q ss_pred Hhhcccc
Q psy7540 197 ALKVFKL 203 (578)
Q Consensus 197 al~~f~~ 203 (578)
.++....
T Consensus 150 l~~~~~~ 156 (402)
T 1fp3_A 150 MMDQIVH 156 (402)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9885543
No 11
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=97.45 E-value=0.0056 Score=64.70 Aligned_cols=290 Identities=17% Similarity=0.130 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHH--HHHhhhhhh
Q psy7540 170 QGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIY--SLFGLYDLV 247 (578)
Q Consensus 170 QG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiy--sLiGLYD~~ 247 (578)
+|.....|-.+|+.| ||++|+++|++-.+.|....++-=.+.. +. -|||+ ++.-+|.
T Consensus 44 ~GF~~g~lw~~ye~T-gd~~~~~~a~~~~~~l~~~~~~~~~~~~----HD--------------~Gf~~~~s~~~~y~-- 102 (377)
T 2ahf_A 44 DGFWSGILWLCYEYT-GDEQYREGAVRTVASFRERLDRFENLDH----HN--------------IGFLYSLSAKAQWI-- 102 (377)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHTTTTTCCB----ST--------------HHHHHHTTHHHHHH--
T ss_pred cchHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhhhcccCCCC----CC--------------chHhhHHHHHHHHH--
Confidence 488899999999999 9999999999998888644321111111 11 58877 4566666
Q ss_pred hhCCCccHHHHHHHHHHHHHHHhhhccCccCC---CcceecccccccCCCCCc-CCCchhHHHHHHHHHHHhhcCCcccc
Q psy7540 248 TLSPRSKQKEALSLYDQGITSLKRMLNMYDTG---SGSSYDLRHISLGIAPKI-ARCDYHATHVNQLLLLATIEKDKIIS 323 (578)
Q Consensus 248 ~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g---~wS~Ydl~h~~~~~~pn~-A~~~YH~lHi~qL~~L~~it~D~~f~ 323 (578)
+|+|+ +++++-.+..++|.+.++. ..| +|...+ .+.|- --++=.-.-|..|-+.+.+|+||.+.
T Consensus 103 -ltg~~---~~~~~~~~aA~~L~~r~~~-~~g~i~sw~~~~-------~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~ 170 (377)
T 2ahf_A 103 -VEKDE---SARKLALDAADVLMRRWRA-DAGIIQAWGPKG-------DPENGGRIIIDCLLNLPLLLWAGEQTGDPEYR 170 (377)
T ss_dssp -HHCCH---HHHHHHHHHHHHHHTTEET-TTTEECCBSSTT-------CTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHH
T ss_pred -HhCCH---HHHHHHHHHHHHHHHhCCC-CCCeEEeccCCC-------CCCCCceEEechHHHHHHHHHHHHHhCCHHHH
Confidence 78887 6777788888888887662 112 343111 00010 00000112377889999999999999
Q ss_pred ccCcccccccCCCcccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCccccccccccccccc-ccc
Q psy7540 324 DTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLN-FHT 402 (578)
Q Consensus 324 ~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~-~w~ 402 (578)
+.|++-.. .+.++ ++.. +..--|.-.++ +..|... ... ...-+..+ .|
T Consensus 171 ~~A~~~a~-----------~~l~~---~~r~--dgs~~h~~~~D-----------~~tG~~~-~~~--t~qG~~dds~W- 219 (377)
T 2ahf_A 171 RVAEAHAL-----------KSRRF---LVRG--DDSSYHTFYFD-----------PENGNAI-RGG--THQGNTDGSTW- 219 (377)
T ss_dssp HHHHHHHH-----------HHHHH---TBBT--TSCBCSEEEEC-----------TTTCCEE-EEE--CSSSSSTTSCB-
T ss_pred HHHHHHHH-----------HHHHh---CcCC--CCCeEEEEEee-----------CCCCCee-eCC--CcCCcCCcchh-
Confidence 98883111 11111 0000 00000110010 0001000 000 00000001 22
Q ss_pred cccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhcccccccCCCc-eeeccCCCceEeeCCCCCCceeehhHHHHHHHhH
Q psy7540 403 SAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGV-QSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLY 481 (578)
Q Consensus 403 SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv-~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~GLy 481 (578)
|=+|+-+|--|+-+|+.| +|++||+.|++..+.|.--.++.|+ ...+ .. +.=|..|. .-.|=-.+..||.
T Consensus 220 -aRGqAw~i~gl~~ly~~T-~d~~yL~~A~~la~~~l~~~~~d~~pywd~-~~----~~~~~~~~--d~Sa~aiaA~~Ll 290 (377)
T 2ahf_A 220 -TRGQAWGIYGFALNSRYL-GNADLLETAKRMARHFLARVPEDGVVYWDF-EV----PQEPSSYR--DSSASAITACGLL 290 (377)
T ss_dssp -HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCCTTSSCBSBT-TS----CCCTTSCB--CHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH-CChHHHHHHHHHHHHHHHhhHHhCCccccc-CC----CccCCCcc--CCCHHHHHHHHHH
Confidence 345677788899999988 6999999999987766654444444 3222 11 11122221 2345566778888
Q ss_pred hhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCCc--ccccccccccCCCCC
Q psy7540 482 DLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSG--SSYDLRHISLGIAPK 533 (578)
Q Consensus 482 D~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~w--S~Ydl~h~~~~~~p~ 533 (578)
.+.++++.. .....++.+...+.|+.+.+.|-+... .---|.|.+.++|.+
T Consensus 291 ~L~~~~~~~-~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~g~L~h~~~~~~~~ 343 (377)
T 2ahf_A 291 EIASQLDES-DPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGG 343 (377)
T ss_dssp HHHHTSCTT-CHHHHHHHHHHHHHHHHHHHHTBCCCCSSCCCSBSCBCSBTTTT
T ss_pred HHHHhcCcc-ccchHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecccccCCCC
Confidence 888888521 112334556666777777777733111 122355665555543
No 12
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=97.14 E-value=0.006 Score=65.02 Aligned_cols=213 Identities=13% Similarity=0.069 Sum_probs=125.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhccccc-ccCCCeeeeecC-CcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCcc
Q psy7540 177 LSRAYYHSGGNVTYLNTALRALKVFKLP-IYKGGVQSKFLD-KFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSK 254 (578)
Q Consensus 177 L~RAY~~t~gD~kYL~aA~kal~~f~~p-~~~GGvl~~~~~-~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~ 254 (578)
+..+|++| ||++|++.|.+|+++.... .++||+.-.+.. +..+ +...+....| .+-.|+...++++|+.
T Consensus 123 ~~~~y~lt-g~~~~~~~~~~aA~~L~~r~~~~~g~iqsw~~~~~~~-------~~~~iID~~m-ni~~L~~A~~~~gd~~ 193 (397)
T 2zzr_A 123 CTAEYRIN-GDVKALEATIKAADKLMERYQEKGGFIQAWGELGYKE-------HYRLIIDCLL-NIQLLFFAYEQTGDEK 193 (397)
T ss_dssp HHHHHHHH-CCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCGG-------GCEEETTHHH-HTHHHHHHHHHHCCHH
T ss_pred HHHHHHHh-CCHHHHHHHHHHHHHHHHHhCcCCCEEEecccCCCCC-------CCceeechHh-HHHHHHHHHHHhCCHH
Confidence 78899999 9999999999999987654 567777654421 1111 2234555555 8999999999999886
Q ss_pred HH-HHHHHHHHHHHHHhhhccCccCCC-c-ceecccccccC---CCCCcCCCch-----hHHHHHHHHHHHhhcCCcccc
Q psy7540 255 QK-EALSLYDQGITSLKRMLNMYDTGS-G-SSYDLRHISLG---IAPKIARCDY-----HATHVNQLLLLATIEKDKIIS 323 (578)
Q Consensus 255 ~~-~A~~lf~~Gi~SLk~~Lp~yD~g~-w-S~Ydl~h~~~~---~~pn~A~~~Y-----H~lHi~qL~~L~~it~D~~f~ 323 (578)
+. .|.+-++. ++++++.. |... + ..||-.-+... +.+. -..+| .+-=|.=|..+|+.|+|+.+.
T Consensus 194 y~~~A~~ha~~---~l~~~~r~-dgs~~h~~~~d~~~G~~~~~~t~qG-y~dds~WaRGqAw~i~gl~~lY~~T~d~~yL 268 (397)
T 2zzr_A 194 YRQVAVNHFYA---SANNVVRD-DSSAFHTFYFDPETGEPLKGVTRQG-YSDESSWARGQAWGIYGIPLSYRKMKDYQQI 268 (397)
T ss_dssp HHHHHHHHHHH---HHHHTBCT-TSCBCSEEEECTTTCCEEEEECTTS-SSTTSCBHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHH---HHHhCcCC-CCCeEEEEEeeCCCCCcccCCcccc-cCcchhhHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 54 35444443 33344332 1111 1 22231111000 0000 11234 566677788899999999999
Q ss_pred ccCcccccccCCCcccChhhHHhhhhhccccccCCCCCcceeecccccccCCccccCCCCCccccccccccccccccccc
Q psy7540 324 DTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTS 403 (578)
Q Consensus 324 ~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~S 403 (578)
+.|. .++.|-+.|++. ..+-+ |.....+ ...+ ..+ .|
T Consensus 269 ~~A~---------------~la~~~l~~~~~------d~~py----------wdt~~~~-~~~~---------~~D--~S 305 (397)
T 2zzr_A 269 ILFK---------------GMTNYFLNRLPE------DKVSY----------WDLIFTD-GSGQ---------PRD--TS 305 (397)
T ss_dssp HHHH---------------HHHHHHHHTCCT------TSCCB----------SBTTCCT-TSCC---------CBC--HH
T ss_pred HHHH---------------HHHHHHHHhhHH------hCCcc----------ccCCCCC-CCCC---------cCC--CC
Confidence 9884 577777777521 11111 2222111 0000 011 23
Q ss_pred ccchhhHHHHHHHHHhhcCCC---hh--HHHHHHHhhhcccccc------cCCCcee
Q psy7540 404 AMGQGHAISVLSRAYYHSGGN---VT--YLNTALRALKVFKLPI------YKGGVQS 449 (578)
Q Consensus 404 aMaQG~aiSvl~RAY~~t~gd---~~--YL~aA~kal~~f~~p~------~~GGv~~ 449 (578)
|.+.+++-|.|....+ ++ ++ |+++|.+.++.+.-.. ..+|++.
T Consensus 306 --a~aiaA~~Ll~L~~~~-~~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~glL~ 359 (397)
T 2zzr_A 306 --ATATAVCGIHEMLKYL-PEVDPDKETYKYAMHTMLRSLIEQYSNNELIAGRPLLL 359 (397)
T ss_dssp --HHHHHHHHHHHHHTTS-CTTCTTHHHHHHHHHHHHHHHHHHTBCCCCCTTCCSBC
T ss_pred --HHHHHHHHHHHHHHhc-CccchhhHHHHHHHHHHHHHHHHHHhccCCCCCCceee
Confidence 2345677888888877 45 67 9999999999887544 3456653
No 13
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=96.76 E-value=0.0078 Score=63.63 Aligned_cols=195 Identities=10% Similarity=-0.007 Sum_probs=106.8
Q ss_pred cccc-CchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHH
Q psy7540 115 NLTL-STSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNT 193 (578)
Q Consensus 115 n~~l-~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~a 193 (578)
-+.+ .++++++..+.+|+||.....++.|...-. +. ++. ..+-.+-|+..|.- |+.|.+|+++| ||++|+++
T Consensus 100 ~y~ltg~~~~~~~~~~aA~~L~~r~~~~~g~i~sw-~~-~~~-~~~~~~~iID~mmn---i~~L~~A~~~~-gd~~y~~~ 172 (377)
T 2ahf_A 100 QWIVEKDESARKLALDAADVLMRRWRADAGIIQAW-GP-KGD-PENGGRIIIDCLLN---LPLLLWAGEQT-GDPEYRRV 172 (377)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCB-SS-TTC-TTTTTEEEGGGGGG---HHHHHHHHHHH-CCTHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCCCCCeEEec-cC-CCC-CCCCceEEechHHH---HHHHHHHHHHh-CCHHHHHH
Confidence 3445 458899999999999999888344543321 11 111 01112447777765 88999999999 99999999
Q ss_pred HHHHhhccccc-cc-CCCeeeeec-C--Cccee-----ecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHH
Q psy7540 194 ALRALKVFKLP-IY-KGGVQSKFL-D--KFPWY-----EEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLY 262 (578)
Q Consensus 194 A~kal~~f~~p-~~-~GGvl~~~~-~--~~~wy-----eEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf 262 (578)
|.++++.-... +. +|+..-++. + +..++ +-|.. .+ .===|.=+.+.||=++++.|+|+.+ +.|.++
T Consensus 173 A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~d-ds-~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~~l- 249 (377)
T 2ahf_A 173 AEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTD-GS-TWTRGQAWGIYGFALNSRYLGNADLLETAKRM- 249 (377)
T ss_dssp HHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSST-TS-CBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCC-cc-hhHHHHHHHHHHHHHHHHHHCChHHHHHHHHH-
Confidence 99988766555 22 354433321 1 12221 11111 00 0000223455555555558887743 234333
Q ss_pred HHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcC-----CccccccCc
Q psy7540 263 DQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEK-----DKIISDTGV 327 (578)
Q Consensus 263 ~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~-----D~~f~~~A~ 327 (578)
.+-+...+|. |.+ -++|+..-.+ +.....+.--++-+.-|..|+.+++ ++.+++.|+
T Consensus 250 ---a~~~l~~~~~-d~~--pywd~~~~~~--~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~ 311 (377)
T 2ahf_A 250 ---ARHFLARVPE-DGV--VYWDFEVPQE--PSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAK 311 (377)
T ss_dssp ---HHHHHTTCCT-TSS--CBSBTTSCCC--TTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH
T ss_pred ---HHHHHHhhHH-hCC--cccccCCCcc--CCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 3344444552 211 1334321111 1112235567788888999999996 444555554
No 14
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=96.69 E-value=0.009 Score=62.24 Aligned_cols=176 Identities=17% Similarity=0.085 Sum_probs=103.7
Q ss_pred cccccc-CchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHH
Q psy7540 113 IDNLTL-STSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYL 191 (578)
Q Consensus 113 ~~n~~l-~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL 191 (578)
++.+.. .++++++....+++++.... .|.|+.. ++. .||.-+-.+++||++| +|++||
T Consensus 56 ~d~~~~tgd~~y~~~a~~~~~~~~~~~---~~~~~~~---------------~~D--D~a~~~la~~~aye~t-~~~~yL 114 (349)
T 3k7x_A 56 LDAYLRTKKQADLEVAEKTYLHNKNRN---GGTLIHD---------------FYD--DMLWNALAAYRLYKAT-GKSIYL 114 (349)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHT---TSSSCCS---------------BHH--HHHHHHHHHHHHHHHH-CCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcC---CCCCCcc---------------Ccc--HHHHHHHHHHHHHHHH-CCchHH
Confidence 344444 34788999999999887642 2344322 222 2444445799999999 999999
Q ss_pred HHHHHHhhcc-cc---cccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHHHH
Q psy7540 192 NTALRALKVF-KL---PIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQGI 266 (578)
Q Consensus 192 ~aA~kal~~f-~~---p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~Gi 266 (578)
+.|+++++.+ .. +...||+.... +. +.|.. + +-||.+. ..+-.++++|+|+.+ +.|.++++--.
T Consensus 115 ~~A~~l~~~l~~~~wd~~~gGGi~W~~-~~----~~~kn---a-isN~~~~--~~la~l~~~tgd~~Yl~~A~~~~~w~~ 183 (349)
T 3k7x_A 115 EDAQLVWQDLVDTGWNDIMGGGFAWRR-PQ----MYYKN---T-PVNAPFI--ILSCWLYNELNETKYLEWAMKTYEWQT 183 (349)
T ss_dssp HHHHHHHHHHHHHTBCSGGGSCBEEET-TE----EEEEE---H-HHHHHHH--HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEecC-CC----ccccc---h-hhHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999988876 22 33346664432 11 22322 1 2476433 333444458888754 45777777433
Q ss_pred HHHhhhccCccCCCcceecccccccCCC-CCcCCCchh-HHHHHHHHHHHhhcCCccccccCc
Q psy7540 267 TSLKRMLNMYDTGSGSSYDLRHISLGIA-PKIARCDYH-ATHVNQLLLLATIEKDKIISDTGV 327 (578)
Q Consensus 267 ~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~-pn~A~~~YH-~lHi~qL~~L~~it~D~~f~~~A~ 327 (578)
. + ++|.. +..||-.+....+. .+...|.|= .+-+.=+..||+.|+|+.+++.|+
T Consensus 184 ~---~---l~d~~-g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~LY~~T~d~~yl~~a~ 239 (349)
T 3k7x_A 184 K---V---LVRED-GFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLELYRITKEAIYLDTAN 239 (349)
T ss_dssp H---H---HBCTT-SCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred h---c---CCCCC-CeEecCCccCCCCccCCcCeeeHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 2 2 23433 66777433211111 112345552 345666888999999998887776
No 15
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=96.67 E-value=0.0095 Score=63.46 Aligned_cols=195 Identities=13% Similarity=0.041 Sum_probs=108.5
Q ss_pred cccc-CchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHH
Q psy7540 115 NLTL-STSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNT 193 (578)
Q Consensus 115 n~~l-~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~a 193 (578)
.+.+ .++++++..+.+|+||....+++.|+..-. +. .+.. .+ .+-|+.+|- .|..|.+|+++| ||++|+++
T Consensus 126 ~y~ltg~~~~~~~~~~aA~~L~~r~~~~~g~iqsw-~~-~~~~-~~-~~~iID~~m---ni~~L~~A~~~~-gd~~y~~~ 197 (397)
T 2zzr_A 126 EYRINGDVKALEATIKAADKLMERYQEKGGFIQAW-GE-LGYK-EH-YRLIIDCLL---NIQLLFFAYEQT-GDEKYRQV 197 (397)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCS-SS-TTCG-GG-CEEETTHHH---HTHHHHHHHHHH-CCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhCcCCCEEEec-cc-CCCC-CC-CceeechHh---HHHHHHHHHHHh-CCHHHHHH
Confidence 3444 458899999999999998887344443221 11 1111 11 356787777 589999999999 99999999
Q ss_pred HHHHhhcccccc-c-CCCeeeeec-C--Cccee-----ecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHH
Q psy7540 194 ALRALKVFKLPI-Y-KGGVQSKFL-D--KFPWY-----EEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLY 262 (578)
Q Consensus 194 A~kal~~f~~p~-~-~GGvl~~~~-~--~~~wy-----eEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf 262 (578)
|.++++...... . +|++.-++. + ++.+. +-|... + .===|.=+.+.||=++++.|+|+.+ +.|.++.
T Consensus 198 A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dd-s-~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~la 275 (397)
T 2zzr_A 198 AVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDE-S-SWARGQAWGIYGIPLSYRKMKDYQQIILFKGMT 275 (397)
T ss_dssp HHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTT-S-CBHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcc-h-hhHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 999888766653 2 354433321 1 12111 111100 0 0000224566666666668988743 3455554
Q ss_pred HHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCC---cc--ccccCcc
Q psy7540 263 DQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKD---KI--ISDTGVP 328 (578)
Q Consensus 263 ~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D---~~--f~~~A~r 328 (578)
+ .+...+|. |.+ -+||+..... +.....+.=-++-+.-|..|+.+|++ +. +++.|++
T Consensus 276 ~----~~l~~~~~-d~~--pywdt~~~~~--~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~ 337 (397)
T 2zzr_A 276 N----YFLNRLPE-DKV--SYWDLIFTDG--SGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHT 337 (397)
T ss_dssp H----HHHHTCCT-TSC--CBSBTTCCTT--SCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred H----HHHHhhHH-hCC--ccccCCCCCC--CCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Confidence 4 34444552 222 1333321111 11112233455666778999999986 44 5555553
No 16
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.62 E-value=0.0011 Score=71.68 Aligned_cols=136 Identities=12% Similarity=0.045 Sum_probs=75.2
Q ss_pred hhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhccccc--------c-cCCCeeeeecCC--cceeecCCCCCCceeechH
Q psy7540 168 MGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLP--------I-YKGGVQSKFLDK--FPWYEEYPTTPAVFILNGF 236 (578)
Q Consensus 168 MaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p--------~-~~GGvl~~~~~~--~~wyeEYpt~p~~~VLNGf 236 (578)
-.||.+++.|.+||+.| ||++|+++|++.++ |... + ++|..+..+... .-.+.+| |
T Consensus 82 y~~Gv~l~gl~~ay~~T-gd~kY~~ya~~~~d-fi~~~~p~~~~~~~~~G~l~~~~r~~~~~~~LDD~----------g- 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETT-GDKRYTDYVQNRFR-FLAEVAPHFKRVYEEKGKTDSQLLQILTPHALDDA----------G- 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCCCHHHHHHHSCCSGGGT----------H-
T ss_pred cCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH-HHHhccchhhhhhhccCCeecccccccCCCcchhH----------H-
Confidence 56799999999999999 99999999999998 4332 1 244433211000 0112221 3
Q ss_pred HHHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhh
Q psy7540 237 IYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATI 316 (578)
Q Consensus 237 iysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~i 316 (578)
+-+++|++.++.|+++.+.++ ..+-.+.|.+..|.-..|.....+-.+. ..+.+.-|- -.-.|-+++.+
T Consensus 149 -~~~~~Li~lY~~T~d~~yl~~---a~~~ad~L~~~~pRt~~Ggf~h~~~~~~-----q~WiD~lyM--~~pfla~~~~~ 217 (445)
T 3k11_A 149 -AVCTAMIKLRLKDESLPVDGL---IQNYFDFIINKEYRLADGTFARNRPQRN-----TLWLDDMFM--GIPAVAQMSRY 217 (445)
T ss_dssp -HHHHHHHHHHHHCTTCCCHHH---HHHHHHHHHHTSCBCTTCCBCBCSSSTT-----EEETHHHHH--HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHcCCCCCCCceeecCCCCC-----ceEecchhh--HHHHHHHHHHH
Confidence 223444555558988865444 4555557777777654443322211000 001111122 33446667777
Q ss_pred cCCcc--ccccCc
Q psy7540 317 EKDKI--ISDTGV 327 (578)
Q Consensus 317 t~D~~--f~~~A~ 327 (578)
|+|+. +.+.|.
T Consensus 218 tgd~~~~y~d~A~ 230 (445)
T 3k11_A 218 DKEAKNKYLAEAV 230 (445)
T ss_dssp CGGGHHHHHHHHH
T ss_pred HCCcchHHHHHHH
Confidence 77776 554444
No 17
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=96.60 E-value=0.019 Score=59.85 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=111.6
Q ss_pred HHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhh----hhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccc
Q psy7540 128 YATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSA----MGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKL 203 (578)
Q Consensus 128 ~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~Sa----MaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~ 203 (578)
...||-|+..|. ++|||+...++.- . ..-+.+|..+ =+-...|-.|.|+|..+ ++++|.+|+.||+++..-
T Consensus 34 ~~~Ad~~l~~Q~-~~GGW~kn~d~~~-~--~~~~~~~~~~t~DnddTa~vl~~Larv~~~~-~~~~y~~Ai~Rgl~wlL~ 108 (332)
T 1gxm_A 34 ASRADVVLSYQQ-NNGGWPKNLDYNS-V--GNGGGGNESGTIDNGATITEMVFLAEVYKSG-GNTKYRDAVRKAANFLVN 108 (332)
T ss_dssp GGGHHHHHHTCC-TTSCCCSCCCTTT-C--CCCCCCCSCEECGGGTTHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-CCCCCCcceeccc-c--cccCCCCCCCCccCccHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHh
Confidence 345999999999 9999988765431 0 0001122211 12457788899999999 999999999999998766
Q ss_pred c-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhh--------CCCccHHHHHHHHHHHHHHHhhh-c
Q psy7540 204 P-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTL--------SPRSKQKEALSLYDQGITSLKRM-L 273 (578)
Q Consensus 204 p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~--------t~d~~~~~A~~lf~~Gi~SLk~~-L 273 (578)
- .+.||.-..+.+...|....|... |-..-.|-=|-+...- .-++...++..-+++||.=|++. .
T Consensus 109 mQ~~nGGWpqFdpd~~~Yl~~IpFnD-----DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe 183 (332)
T 1gxm_A 109 SQYSTGALPQFYPLKGGYSDHATFND-----NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQW 183 (332)
T ss_dssp HCCTTSCCBSEESCCSGGGGSEECGG-----GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCCccccCCCcccccccCCcch-----HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhC
Confidence 5 888997665554455555555544 3333344334443321 11111145667799999966554 4
Q ss_pred cCccCCCcceecccccccCCCCCcCCCchhH-----HHHHHHHHHHhhcCCccc---cccCcccccccCC
Q psy7540 274 NMYDTGSGSSYDLRHISLGIAPKIARCDYHA-----THVNQLLLLATIEKDKII---SDTGVPVTTQWDP 335 (578)
Q Consensus 274 p~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~-----lHi~qL~~L~~it~D~~f---~~~A~rW~~q~~~ 335 (578)
| |.|.++.-+..|...--.|-.||..=+. -.+..++.|-.+..+|.+ -+-|..|-.+-+.
T Consensus 184 ~--dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 184 K--QNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp E--ETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred c--cCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 4 3333344444443221234444432111 123334455555555543 2446667665554
No 18
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=96.45 E-value=0.011 Score=63.15 Aligned_cols=169 Identities=16% Similarity=0.198 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccccc--cc-cCCC---------CCCCCchhhhh--------------hhHHHHHHH
Q psy7540 125 AQFYATAEWLVNHQDPKTGGWPNPVRRR--IT-AGIG---------DLKPGWYSAMG--------------QGHAISVLS 178 (578)
Q Consensus 125 ~~F~~aAdWLl~~qd~~~G~W~~~~~~~--~~-~~~~---------~L~~gW~SaMa--------------QG~aiSvL~ 178 (578)
+....+||+|+..|. ++|||+...++. .. .+.. ...+|+.|.+. -...|-+|.
T Consensus 81 ~~A~~iAd~ll~~Q~-~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~ 159 (408)
T 1r76_A 81 KAARHVADVIVSFQT-PAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLA 159 (408)
T ss_dssp HHHHHHHHHHHHHCC-TTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccc-cCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHH
Confidence 356899999999999 999998776542 10 0000 01233333333 334588899
Q ss_pred HHHHh-cC-CChhHHHHHHHHhhccccc-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhh----hhCC
Q psy7540 179 RAYYH-SG-GNVTYLNTALRALKVFKLP-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLV----TLSP 251 (578)
Q Consensus 179 RAY~~-t~-gD~kYL~aA~kal~~f~~p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~----~~t~ 251 (578)
|+|.. +| ++++|.+|+.||+++..-- ...||.-..+.+...|+...|..... =+++-.+++.-... .+.+
T Consensus 160 rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDv---t~rvle~L~~~~~~~~~~~~~~ 236 (408)
T 1r76_A 160 QVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDA---LVHVAELLSDIAAGRDGFGFVP 236 (408)
T ss_dssp HHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGH---HHHHHHHHHHHHHTCTTCTTSC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHH---HHHHHHHHHHHHhccCcccccc
Confidence 99998 42 5789999999999987666 88888655443334555555554421 13333333332210 1223
Q ss_pred CccHHHHHHHHHHHHHHHhhh-ccCccCCCcceecccccccCCCCCcCC
Q psy7540 252 RSKQKEALSLYDQGITSLKRM-LNMYDTGSGSSYDLRHISLGIAPKIAR 299 (578)
Q Consensus 252 d~~~~~A~~lf~~Gi~SLk~~-Lp~yD~g~wS~Ydl~h~~~~~~pn~A~ 299 (578)
+....++..-.++||.=|++. .| ..|+|..-+.+|..--..|..|+
T Consensus 237 ~~~~~~~~~av~Rgi~~Ll~~Qe~--~dGsw~rWg~qY~ygT~~Pa~aR 283 (408)
T 1r76_A 237 PAIRTRALEATNAAIHCIVETQVV--QDGKRLGWGQQHDALTLRPTSAR 283 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCE--ETTEECCCCSEECTTTCSBCCCS
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcc--cCCcccchhcccccccCcchhhh
Confidence 333345667799999976665 44 24666666665553222344443
No 19
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=96.08 E-value=0.026 Score=58.70 Aligned_cols=144 Identities=19% Similarity=0.111 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHHHhhhcc-c---ccccCCCceeeccCCCceEeeCCCCCCceeehhHHHHHHHhHhh
Q psy7540 408 GHAISVLSRAYYHSGGNVTYLNTALRALKVF-K---LPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDL 483 (578)
Q Consensus 408 G~aiSvl~RAY~~t~gd~~YL~aA~kal~~f-~---~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~ 483 (578)
|.-+..+.|||+.| ++++||+.|+++.+.+ . -+...||+.... +. +.|... +-||.+. ..+-.+
T Consensus 95 a~~~la~~~aye~t-~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~-~~----~~~kna----isN~~~~--~~la~l 162 (349)
T 3k7x_A 95 LWNALAAYRLYKAT-GKSIYLEDAQLVWQDLVDTGWNDIMGGGFAWRR-PQ----MYYKNT----PVNAPFI--ILSCWL 162 (349)
T ss_dssp HHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHTBCSGGGSCBEEET-TE----EEEEEH----HHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHhCCCCCCCCceEecC-CC----ccccch----hhHHHHH--HHHHHH
Confidence 44345678999988 6999999999887766 2 244467776542 11 233322 2587554 333455
Q ss_pred hhcCCcch-hHHHHHHHHHHHHHHHHHhccccCCCcccccccccc-cCCCCCCCCCChH-HHHHHHHHHHHhhcCChhhH
Q psy7540 484 VTLSPRSK-QKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHIS-LGIAPKIARCDYH-ATHVNQLLLLATIEKDKIIS 560 (578)
Q Consensus 484 ~~~~~~~~-~~~A~~lF~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~-~~~~p~~A~~~YH-~lHi~qL~~L~~it~d~~f~ 560 (578)
+++++++. .+.|+++++ -+++ .++|.. +.+||-.+.. -+...+-..|.|= .+-|.=+-.||..|+|+.++
T Consensus 163 ~~~tgd~~Yl~~A~~~~~----w~~~--~l~d~~-g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~LY~~T~d~~yl 235 (349)
T 3k7x_A 163 YNELNETKYLEWAMKTYE----WQTK--VLVRED-GFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLELYRITKEAIYL 235 (349)
T ss_dssp HHHHCCHHHHHHHHHHHH----HHHH--HHBCTT-SCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhCCHHHHHHHHHHHH----HHHh--cCCCCC-CeEecCCccCCCCccCCcCeeeHHHHHHHHHHHHHHHhhCcHHHH
Confidence 55676653 355766665 3334 245554 7778754321 1222222346553 45667788999999999999
Q ss_pred HHHHHHHhhh
Q psy7540 561 DTGQRWAGYI 570 (578)
Q Consensus 561 ~~a~rW~~Y~ 570 (578)
+.+++-..++
T Consensus 236 ~~a~~l~~~~ 245 (349)
T 3k7x_A 236 DTANKTAAIS 245 (349)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877665
No 20
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=95.53 E-value=0.16 Score=56.58 Aligned_cols=174 Identities=18% Similarity=0.132 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccccc---------cc-----cc--CCCCCCCCchhhhhhhHHHHHHHHHHHh--
Q psy7540 122 DHMAQFYATAEWLVNHQDPKTGGWPNPVRR---------RI-----TA--GIGDLKPGWYSAMGQGHAISVLSRAYYH-- 183 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~---------~~-----~~--~~~~L~~gW~SaMaQG~aiSvL~RAY~~-- 183 (578)
..++..+=.+|||++-|+ ++|..-..|.- .+ .. .......+ +.-+-|.++.+|++|+.+
T Consensus 191 ~lldE~rWg~D~llkm~~-~~g~~y~qVgd~W~~d~~~R~~~~~~~~~~~~~~~y~~~--~~~~agl~aAALA~Asrvf~ 267 (586)
T 3h7l_A 191 RLIEEALFGADFLVRMQN-EKGFFYMTVFDKWSKDTAQREICAYETQLGHKFDDYQAG--FRQGGGVAIAALAAASRLGV 267 (586)
T ss_dssp HHHHHHHHHHHHHHHTBC-TTSCBBCEEECTTCCCGGGCEEEEEETTTTEEESCCBCC--GGGTHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHhccc-CCCeEEEEecCCCCCCCCccccccccCCCCCCCcceecC--CCCcHHHHHHHHHHHhcccC
Confidence 457777788899999999 66653222211 00 00 00011222 123457789999999999
Q ss_pred ---cCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH-HHH
Q psy7540 184 ---SGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK-EAL 259 (578)
Q Consensus 184 ---t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~-~A~ 259 (578)
. +.++||++|++|.+.-..... .. + ++ .++-+++-+ +.++++=++++.|+++.+- .|.
T Consensus 268 d~~~-~a~~~L~aA~~a~~fa~~~~~---~y--~-~~----------g~~~~~De~-~~~WAA~eLy~ATgd~~YL~~a~ 329 (586)
T 3h7l_A 268 HGEY-DQQKYRNAAENGYWHLKEHNT---QY--L-ND----------GEENIIDEY-CALLASVELFKATKETRYLEESR 329 (586)
T ss_dssp CSSS-CHHHHHHHHHHHHHHHHHHHH---HH--S-TT----------SCCCHHHHH-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCc-ChHHHHHHHHHHHHHHHhcCc---cc--c-CC----------CCccchhHH-HHHHHHHHHHHHhCCHHHHHHHH
Confidence 6 667899999999998766522 11 1 11 112234555 4456666666699987543 344
Q ss_pred HHHHHHHHHHhhhccCccCC--CcceecccccccCCCCCcCCCchhHHH----HHHHHHHHhhcCCccccccCcccc
Q psy7540 260 SLYDQGITSLKRMLNMYDTG--SGSSYDLRHISLGIAPKIARCDYHATH----VNQLLLLATIEKDKIISDTGVPVT 330 (578)
Q Consensus 260 ~lf~~Gi~SLk~~Lp~yD~g--~wS~Ydl~h~~~~~~pn~A~~~YH~lH----i~qL~~L~~it~D~~f~~~A~rW~ 330 (578)
++.+ .|...+..-+.+ .|+-=|- ..++.||... +--|..|..+++|+.+++.++.+.
T Consensus 330 ~~a~----~l~~~~~~~~~~g~~w~~~d~----------~~r~~~d~a~~gl~~iaLl~l~~~~~d~~~~~~a~~~i 392 (586)
T 3h7l_A 330 LWAQ----RLVARQMSDEQIQHFWSANQD----------GSRPYFHAAEAGLPTIALCEYLAIEDDSVQTESVKCIV 392 (586)
T ss_dssp HHHH----HHHTTEECCSSCSSEEBSSSS----------SSSBCCCTTTTTHHHHHHHHHHHHCCSTTTTHHHHHHH
T ss_pred HHHH----HHHHhccCCccCCCcCCCccc----------CCcccccccccHHHHHHHHHhhhhcCChHHHHHHHHHH
Confidence 3333 233333211111 2332111 1234455332 222455678888887777666433
No 21
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=95.19 E-value=0.078 Score=55.25 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=88.6
Q ss_pred ccccccccccC-chHHHHHHHHHHHHHHhcCCCCCCC-cccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCC
Q psy7540 109 GSGSIDNLTLS-TSDHMAQFYATAEWLVNHQDPKTGG-WPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGG 186 (578)
Q Consensus 109 g~g~~~n~~l~-~~~~~~~F~~aAdWLl~~qd~~~G~-W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~g 186 (578)
|.+.++-+.++ ++++++.....+++|..+.+.++|+ |.. .+.. ..-|..+|. .++.+|.|++++| |
T Consensus 93 g~~ll~lY~~Tgd~~yl~~a~~la~~l~~~~r~~~G~fw~~-------~~~~--~~~w~D~l~--m~~p~L~~l~~~t-g 160 (373)
T 1nc5_A 93 GLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHK-------DGYP--YQMWLDGLY--MGGPFALKYANLK-Q 160 (373)
T ss_dssp GGGHHHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSC-------TTST--TEEETHHHH--HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhccCCCCCCeecc-------CCCC--CeEEeCcHH--HHHHHHHHHHHHH-C
Confidence 33444445554 4788999999999997766545666 421 1111 244777655 6788999999999 9
Q ss_pred ChhHHHHHHHHhhcccccc--cCCCeee-ee--cCCcceeecCCCC-CCceeechHHHHHHhhhhhhhhCCCc--cHHHH
Q psy7540 187 NVTYLNTALRALKVFKLPI--YKGGVQS-KF--LDKFPWYEEYPTT-PAVFILNGFIYSLFGLYDLVTLSPRS--KQKEA 258 (578)
Q Consensus 187 D~kYL~aA~kal~~f~~p~--~~GGvl~-~~--~~~~~wyeEYpt~-p~~~VLNGfiysLiGLYD~~~~t~d~--~~~~A 258 (578)
|++|++.|.+.++.+.... .+-|... .+ .++.+|-. -.+. .+++=-=|.=-.+.||-+..+..+.. ..++-
T Consensus 161 d~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d-~~tg~~~~~WaRg~gW~~~gl~~~l~~lp~~~~~~~~~ 239 (373)
T 1nc5_A 161 ETELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWAN-EETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVW 239 (373)
T ss_dssp CTHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSC-TTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCcccccccc-ccCCCCCCcccchHhHHHHHHHHHHHhCCccchhHHHH
Confidence 9999999999888776542 2333321 11 11122321 0010 11111113333444555544455432 22345
Q ss_pred HHHHHHHHHHHhhhccCccCCCcc
Q psy7540 259 LSLYDQGITSLKRMLNMYDTGSGS 282 (578)
Q Consensus 259 ~~lf~~Gi~SLk~~Lp~yD~g~wS 282 (578)
.++|++=++.|.+..+. +.|.|-
T Consensus 240 ~~~~~~~a~~l~~~q~~-~dG~W~ 262 (373)
T 1nc5_A 240 KNTLQDMIKSICRYQDK-ETGLWY 262 (373)
T ss_dssp HHHHHHHHHHHHTTSCT-TTSCCB
T ss_pred HHHHHHHHHHHHHhcCC-CCCcee
Confidence 56666666666655531 256664
No 22
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=93.28 E-value=0.21 Score=52.55 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhccc--cc-ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCC
Q psy7540 176 VLSRAYYHSGGNVTYLNTALRALKVFK--LP-IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPR 252 (578)
Q Consensus 176 vL~RAY~~t~gD~kYL~aA~kal~~f~--~p-~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d 252 (578)
.|+.+|++| +|++|+++|.++.+... .| .++||+... ...+ ++ +....++|-+-++.-|..++++|+|
T Consensus 118 ~l~~lY~~T-gd~~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~---~~~~--~~---~~~~WiDgl~M~~p~La~~~~~tgd 188 (382)
T 3pmm_A 118 TLAYRFEET-GRMAYLPWLESWAEWAMHEMPRTEQGGMQHM---TLAE--EN---HQQMWDDTLMMTVLPLAKIGKLLNR 188 (382)
T ss_dssp HHHHHHHHH-CCGGGHHHHHHHHHHHHHTSCBCGGGCBCCC---CSSC--CC---TTEEETTHHHHTHHHHHHHHHHTTC
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHHhhCCCCcCCCeeee---cCCC--CC---CCcEEecchhhhHHHHHHHHHHHCC
Confidence 469999999 99999999999999763 34 556766322 1111 12 3345678877788899999999998
Q ss_pred ccH-HHHHHHHHHHHHH
Q psy7540 253 SKQ-KEALSLYDQGITS 268 (578)
Q Consensus 253 ~~~-~~A~~lf~~Gi~S 268 (578)
+.+ ++|.+-|..-.+.
T Consensus 189 ~~y~d~A~~q~~~~~~~ 205 (382)
T 3pmm_A 189 PQYVEEATYQFLLHVQN 205 (382)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 854 4576666654444
No 23
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=87.27 E-value=1.7 Score=48.10 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=96.2
Q ss_pred ecc-ccccccccCc-hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchh--hhhhhHHHH-HHHHHHH
Q psy7540 108 YGS-GSIDNLTLST-SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYS--AMGQGHAIS-VLSRAYY 182 (578)
Q Consensus 108 ~g~-g~~~n~~l~~-~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~S--aMaQG~aiS-vL~RAY~ 182 (578)
|-+ |.++-+.|+. +.++++..+.||.|+--.+ ..-|.|+..= .+..+. .-+++|.+ +.|..-.++ =|.|.-+
T Consensus 173 R~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAFd-TptgiP~~~v-nl~~g~-~~~~~~~~~s~lAe~GSl~LEF~~LS~ 249 (538)
T 1x9d_A 173 RILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFR-TPSKIPYSDV-NIGTGV-AHPPRWTSDSTVAEVTSIQLEFRELSR 249 (538)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGC-STTSCCCSEE-ETTTCC-EECCTTCSEEEHHHHHSSHHHHHHHHH
T ss_pred hhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhhc-CCCCCCccee-eecccc-cCCCCcCCCceeccccceeeeHHHHHH
Confidence 444 6778888866 6789999999999998888 4444555421 122221 12455643 333322222 2689999
Q ss_pred hcCCChhHHHHHHHHhhcccccc-cCCCeeeee--cCCcceeecCCCCCCceeechHHHHHHhhhhh----hhhCCCccH
Q psy7540 183 HSGGNVTYLNTALRALKVFKLPI-YKGGVQSKF--LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDL----VTLSPRSKQ 255 (578)
Q Consensus 183 ~t~gD~kYL~aA~kal~~f~~p~-~~GGvl~~~--~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~----~~~t~d~~~ 255 (578)
+| ||++|.++|+++.+.+.... ..-|.+..+ .....|... +.+.+.|.+=|. |+| +.+++.. .
T Consensus 250 LT-Gd~~Y~~~a~r~~~~l~~~~~~~~GL~p~~i~~~tG~~~~~-----~~~~lGa~~DS~---YEYLlK~~il~g~~-d 319 (538)
T 1x9d_A 250 LT-GDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHL-----GVFTLGARADSY---YEYLLKQWIQGGKQ-E 319 (538)
T ss_dssp HH-CCTHHHHHHHHHHHHHHTCSCCBTTBCCSEEETTTCCEEST-----TEECSSTTTHHH---HHHHHHHHHHTTSC-C
T ss_pred Hh-CCcHHHHHHHHHHHHHHhcccCCCCCcceEEeCCCCCccCC-----cceeecCCccHH---HHHHHHHHHHcCCc-h
Confidence 99 99999999999999887654 344544322 123445322 245555555554 443 2344421 2
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy7540 256 KEALSLYDQGITSLKRMLN 274 (578)
Q Consensus 256 ~~A~~lf~~Gi~SLk~~Lp 274 (578)
.+..++|.+.+.++++.|-
T Consensus 320 ~~y~~my~~a~~~i~~~L~ 338 (538)
T 1x9d_A 320 TQLLEDYVEAIEGVRTHLL 338 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3688999999999998874
No 24
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.17 E-value=1 Score=48.54 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCC-hhHHHHHHHHhh
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGN-VTYLNTALRALK 199 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD-~kYL~aA~kal~ 199 (578)
+++.+.|+..|+.|++.|+ ++|.|....+. +..+.-+=|-...+..|+++.+.---| ++|+.+|+||++
T Consensus 290 ~~l~~~~~~~a~~l~~~Q~-~~G~W~~vld~---------~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~ 359 (445)
T 3k11_A 290 PKVMDYFRAHVRGVTALQS-GEGFWHQLLDC---------NDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWH 359 (445)
T ss_dssp HHHHHHHHHHHHHHHTTCC-TTSCEESBTTC---------TTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCchhhccCC---------CCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999 89999754432 122333334445556677777753123 579999999999
Q ss_pred cccccccCCCee-eee
Q psy7540 200 VFKLPIYKGGVQ-SKF 214 (578)
Q Consensus 200 ~f~~p~~~GGvl-~~~ 214 (578)
.....+++-|.+ .+|
T Consensus 360 ~L~~~i~~dG~l~~v~ 375 (445)
T 3k11_A 360 AVAGKINEEGQVEGTC 375 (445)
T ss_dssp HHHTTBCTTSCBCSCB
T ss_pred HHHHhCCCCCCEecee
Confidence 988877776655 344
No 25
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=86.00 E-value=1.5 Score=45.64 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcC-------CC---hh
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSG-------GN---VT 189 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~-------gD---~k 189 (578)
.+.+.+.|..|.+||+.-|- ++|||+-.+... .++.+ ..|+-. =+=+..|.+|..+.+-.+ -| .+
T Consensus 92 ~~~y~~Ai~Rgl~wlL~mQ~-~nGGWpqFdpd~--~~Yl~-~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~ 166 (332)
T 1gxm_A 92 NTKYRDAVRKAANFLVNSQY-STGALPQFYPLK--GGYSD-HATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTR 166 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-TTSCCBSEESCC--SGGGG-SEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccC-CCCCccccCCCc--ccccc-cCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhh
Confidence 36789999999999999999 999998664211 11100 111111 245788888888865331 11 67
Q ss_pred HHHHHHHHhhccccc-ccCCCeeeee
Q psy7540 190 YLNTALRALKVFKLP-IYKGGVQSKF 214 (578)
Q Consensus 190 YL~aA~kal~~f~~p-~~~GGvl~~~ 214 (578)
...+.+||++..... ..+||....+
T Consensus 167 ~~~av~Rgid~Llk~Qe~dggw~g~W 192 (332)
T 1gxm_A 167 FKTAVTKGTDYILKAQWKQNGVLTVW 192 (332)
T ss_dssp HHHHHHHHHHHHHHHSCEETTEECCC
T ss_pred hHHHHHHHHHHHHHhhCccCCCcCee
Confidence 889999999998887 7788866544
No 26
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=85.70 E-value=3 Score=45.36 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=95.7
Q ss_pred ecc-ccccccccCc-hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchh----hhhhhHH-HHHHHHH
Q psy7540 108 YGS-GSIDNLTLST-SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYS----AMGQGHA-ISVLSRA 180 (578)
Q Consensus 108 ~g~-g~~~n~~l~~-~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~S----aMaQG~a-iSvL~RA 180 (578)
|-+ |.++-+.|+. +-++++..+.||.|+--.+ ..-|.|+..- .+..+. .-.++|.+ ..|..-- +-=|.|.
T Consensus 109 R~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAFd-TptgiP~~~v-nl~~g~-~~~~~~~~~~~s~lAe~gsl~LEF~~L 185 (478)
T 1nxc_A 109 RFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFH-TPSGIPWALL-NMKSGI-GRNWPWASGGSSILAEFGTLHLEFMHL 185 (478)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGC-SSSSCCCSEE-ETTTCC-EECCTTSGGGCEEHHHHTTCHHHHHHH
T ss_pred hhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhhc-CCCCCCccee-eccccc-CCCCcccCCCCcccccccchhhhHHHH
Confidence 444 6788888866 5679999999999998888 4445555421 122221 12456753 2333222 2235899
Q ss_pred HHhcCCChhHHHHHHHHhhcccccccCCCeeeeec--CCcceeecCCCCCCceeechHHHHHHhhhhh----hhhCCCcc
Q psy7540 181 YYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFL--DKFPWYEEYPTTPAVFILNGFIYSLFGLYDL----VTLSPRSK 254 (578)
Q Consensus 181 Y~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~--~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~----~~~t~d~~ 254 (578)
.++| ||++|.++|+++.+.+......-|.+..+. ....|- ...+.+.|.+=|. |+| +.+++..
T Consensus 186 S~lT-Gd~~Y~~~a~~~~~~l~~~~~~~GL~p~~i~~~tg~~~------~~~~~~Ga~~DS~---YEYLlK~~il~g~~- 254 (478)
T 1nxc_A 186 SHLS-GDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWG------QHHVSVGGLGDSF---YEYLLKAWLMSDKT- 254 (478)
T ss_dssp HHHH-CCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBC------SCEECSSTTTHHH---HHHHHHHHHHTTTC-
T ss_pred HHHH-CChHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCcc------CceeeecCCCchH---HHHHHHHHHHcCCc-
Confidence 9999 999999999999987765443445443322 233452 2345566665553 443 2344422
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q psy7540 255 QKEALSLYDQGITSLKRMLN 274 (578)
Q Consensus 255 ~~~A~~lf~~Gi~SLk~~Lp 274 (578)
..+.+++|.+.+.++++.|-
T Consensus 255 d~~~~~m~~~a~~~i~~~l~ 274 (478)
T 1nxc_A 255 DLEAKKMYFDAVQAIETHLI 274 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHTE
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 13688999999999988874
No 27
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=85.52 E-value=3.2 Score=45.68 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccc-ccccccCC----CCC-CCCc---hhhhhhhHHHHHHHHHHHhcCCC----
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPV-RRRITAGI----GDL-KPGW---YSAMGQGHAISVLSRAYYHSGGN---- 187 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~-~~~~~~~~----~~L-~~gW---~SaMaQG~aiSvL~RAY~~t~gD---- 187 (578)
+..++..+-.+|||++-|++++|.--..+ +... .++ +++ .+-+ .|.=+-|..+.+|+.|+.++ ++
T Consensus 188 ~d~ldeikwg~D~llk~~~~~~g~~y~~v~~~~w-~g~~~~Pe~~~~~R~~~~~~t~~~~~~AAalA~as~vf-~~~D~~ 265 (537)
T 3gzk_A 188 PPALEVAREEIAWLLTMQDPATGGVYHKVTTPSF-PPLDTRPEDDDAPLVLSPISYAATATFCAAMAHAALVY-RPFDPA 265 (537)
T ss_dssp CHHHHHHHHHHHHHHHTBCTTTCCBBSEEECSSC-CCTTCCGGGCCSCEEECCBCHHHHHHHHHHHHHHHHHH-TTTCHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeEEEEecCCCc-CCCCcCcccCCCcceEeecCCcHHHHHHHHHHHHHHhh-cccCHH
Confidence 35788888899999998873434321111 0000 000 000 1111 24445799999999999999 88
Q ss_pred --hhHHHHHHHHhhcccccccCCCeeee-ecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH-HHHHHH
Q psy7540 188 --VTYLNTALRALKVFKLPIYKGGVQSK-FLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK-EALSLY 262 (578)
Q Consensus 188 --~kYL~aA~kal~~f~~p~~~GGvl~~-~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~-~A~~lf 262 (578)
+++|++|+++.+........ .... ......+ |.. +-..+-++.+.+.||. .|+|+.+. .|.+++
T Consensus 266 yA~~~L~~A~~~~~fa~~~~~~--~~~~~~~~~~~~---Y~~---~~~~Del~wAA~~Ly~---aTgd~~Yl~~a~~~~ 333 (537)
T 3gzk_A 266 LSSCCADAARRAYAWLGAHEMQ--PFHNPDGILTGE---YGD---AELRDELLWASCALLR---MTGDSAWARVCEPLL 333 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCC--CCCCCTTCCSCC---CCC---SCCHHHHHHHHHHHHH---HHCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccc--cccCCcccccCC---cCC---CccchHHHHHHHHHHH---HhCCHHHHHHHHHhh
Confidence 89999999999877654321 0000 0000112 221 1234446677777777 88887543 454443
No 28
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=83.35 E-value=2.4 Score=44.66 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhh
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALK 199 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~ 199 (578)
.+++.+....+.+|+++.+. ++|.||...+. . .+..+.|=-+ +-|.++. |.+|++.+ +|++|++.|.++++
T Consensus 249 ~~~~~~~i~~~l~~l~~~~~-~~g~wp~~~~~----~-~~~~~~wChG-~~Gi~~~-l~~~~~~~-~~~~~~~~a~~~~~ 319 (411)
T 3e6u_A 249 QGKLHSLVKPSVDYVCQLKF-PSGNYPPCIGD----N-RDLLVHWCHG-APGVIYM-LIQAYKVF-REEKYLCDAYQCAD 319 (411)
T ss_dssp HHHHHHTHHHHHHHHHHTCC-TTSCCCSBTTC----C-CCCCCSSSSS-HHHHHHH-HHHHHHHH-CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCc----c-cCccccccCC-cHHHHHH-HHHHHHHc-CCHHHHHHHHHHHH
Confidence 36778899999999999999 77999865432 1 2335567443 2344444 68999999 99999999999886
Q ss_pred cccccccCCCeeeeecCCcceeecCCCCCC-ceeechHHHHHHhhhhhhhhCCCccHH-HHHHHH
Q psy7540 200 VFKLPIYKGGVQSKFLDKFPWYEEYPTTPA-VFILNGFIYSLFGLYDLVTLSPRSKQK-EALSLY 262 (578)
Q Consensus 200 ~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~-~~VLNGfiysLiGLYD~~~~t~d~~~~-~A~~lf 262 (578)
.-.. . |.+ ...++ -+=+-|-.+.++-+|. .|+++... .|.++.
T Consensus 320 ~~~~---~-g~~-------------~~~~~lChG~aG~~~~ll~~~~---~t~~~~~~~~A~~~~ 364 (411)
T 3e6u_A 320 VIWQ---Y-GLL-------------KKGYGLCHGSAGNAYAFLTLYN---LTQDMKYLYRACKFA 364 (411)
T ss_dssp HHHH---H-CSB-------------TTCSCSTTSHHHHHHHHHHHHH---HHCCHHHHHHHHHHH
T ss_pred HHHh---c-Ccc-------------CCCCceecChHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Confidence 4211 1 110 00111 1334577777777777 67776433 344433
No 29
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=82.16 E-value=1.6 Score=48.03 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=93.8
Q ss_pred eecc-ccccccccC------c-hHHHHHHHHHHHHHHhcCC-CCCCCcccccccccccCCCCCCCCchh---hhhhhHHH
Q psy7540 107 LYGS-GSIDNLTLS------T-SDHMAQFYATAEWLVNHQD-PKTGGWPNPVRRRITAGIGDLKPGWYS---AMGQGHAI 174 (578)
Q Consensus 107 ~~g~-g~~~n~~l~------~-~~~~~~F~~aAdWLl~~qd-~~~G~W~~~~~~~~~~~~~~L~~gW~S---aMaQG~ai 174 (578)
-|.+ |.++-+.|+ . +.++++..+.||.|+--.+ .++| .|+..= .+..+. ..+++|-+ +.|..--+
T Consensus 102 IR~LGGLLSAy~Ls~~~~~~~d~~lL~kA~dLadrLlpAFd~Tptg-iP~~~v-nl~~g~-~~~~~~~~~~s~~Ae~gSl 178 (511)
T 1dl2_A 102 IRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTG-IPYSSI-NLHSGQ-AVKNHADGGASSTAEFTTL 178 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGGGSSSSS-CCCSEE-ETTTCC-EECCSSGGGCEEHHHHSSC
T ss_pred hhhhhhhhhHHHhcccccCCCcHHHHHHHHHHHHHHHHhhcCCCCC-CCCcee-ecccCC-CCCCCCCCcccccccccce
Confidence 3444 667888887 4 5789999999999998776 4555 444310 122221 22445543 23333222
Q ss_pred -HHHHHHHHhcCCChhHHHHHHHHhhcccccc----cCCCeeeeec--CCcceeecCCCCCCceeechHHHHHHhhhhhh
Q psy7540 175 -SVLSRAYYHSGGNVTYLNTALRALKVFKLPI----YKGGVQSKFL--DKFPWYEEYPTTPAVFILNGFIYSLFGLYDLV 247 (578)
Q Consensus 175 -SvL~RAY~~t~gD~kYL~aA~kal~~f~~p~----~~GGvl~~~~--~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~ 247 (578)
-=|.|.-++| ||++|.++|+++.+.+.... ...|.+..+. ....|.. ..+.+.|.+=|. |+|-
T Consensus 179 ~LEF~~LS~LT-Gd~~Y~~~a~r~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~~------~~~~lGa~~DS~---YEYL 248 (511)
T 1dl2_A 179 QMEFKYLAYLT-GNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGA------STIRFGSRGDSF---YEYL 248 (511)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHTTHHHHHHHHTHHHHHTTCCBSEECTTTCCBCS------CCBCSSTTTHHH---HHHH
T ss_pred eeeHHHHHHHH-CChHHHHHHHHHHHHHHhcccccCCCCCCcceEEcCCCCCccC------CeeeecCCCCcH---HHHH
Confidence 2368999999 99999999999999877643 3345444322 2345532 234455544443 3332
Q ss_pred ----hhCCCccHHHHHHHHHHHHHHHhhhcc
Q psy7540 248 ----TLSPRSKQKEALSLYDQGITSLKRMLN 274 (578)
Q Consensus 248 ----~~t~d~~~~~A~~lf~~Gi~SLk~~Lp 274 (578)
.++.|+ +.+++|++.+.++++.|-
T Consensus 249 lK~~il~~d~---~y~~m~~~a~~~i~~~L~ 276 (511)
T 1dl2_A 249 LKQYLLTHET---LYYDLYRKSMEGMKKHLL 276 (511)
T ss_dssp HHHHHHHCCH---HHHHHHHHHHHHHHHHTE
T ss_pred HHHHHhcCCH---HHHHHHHHHHHHHHHHhc
Confidence 233454 688999999999998875
No 30
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=81.55 E-value=10 Score=43.14 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCC-C------------CCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcC--
Q psy7540 121 SDHMAQFYATAEWLVNHQDPK-T------------GGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSG-- 185 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~-~------------G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~-- 185 (578)
++..+...+|++||++.|..+ . |||...+. ..+|-+.-+-+.++..|.++.+..+
T Consensus 405 ~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~----------~~~~pd~d~TA~vl~aL~~~~~~~~~~ 474 (732)
T 1w6k_A 405 PEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTL----------DCGWIVSDCTAEALKAVLLLQEKCPHV 474 (732)
T ss_dssp GGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCT----------TTCCBCHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCC----------CCCCCccccHHHHHHHHHHHhcccccc
Confidence 356778899999999999622 1 66643321 2234455566889999999887741
Q ss_pred CChhHHHHHHHHhhccccc-ccCCCeeeee-cCCcceeecCCCCC--Cceeec-----hHHHHHHhhhhhhhhCCCccHH
Q psy7540 186 GNVTYLNTALRALKVFKLP-IYKGGVQSKF-LDKFPWYEEYPTTP--AVFILN-----GFIYSLFGLYDLVTLSPRSKQK 256 (578)
Q Consensus 186 gD~kYL~aA~kal~~f~~p-~~~GGvl~~~-~~~~~wyeEYpt~p--~~~VLN-----GfiysLiGLYD~~~~t~d~~~~ 256 (578)
+++.+-++..+|+++..-- .++||+-... .+...|.+..|... ..-.+| .--++|.+|-.+....++...+
T Consensus 475 g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~ 554 (732)
T 1w6k_A 475 TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAA 554 (732)
T ss_dssp CSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHH
T ss_pred cchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccch
Confidence 3456777888888877654 6678874321 12356766554111 001111 1224566666655543322112
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy7540 257 EALSLYDQGITSLKRML 273 (578)
Q Consensus 257 ~A~~lf~~Gi~SLk~~L 273 (578)
+....-++++.=|+..-
T Consensus 555 ~~~~~i~rAv~yL~~~Q 571 (732)
T 1w6k_A 555 EIRETLTQGLEFCRRQQ 571 (732)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 23344667777666554
No 31
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=80.72 E-value=3.1 Score=44.43 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCC---------ChhHH
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGG---------NVTYL 191 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~g---------D~kYL 191 (578)
+.+.+.+..+.+||+.-|- ++|||+-.+... .++.+ ..|+-. =+=+..|.+|..+.+-. + +.++.
T Consensus 171 ~~y~~Ai~Rgl~wlL~mQ~-~nGGWpqFdpdn--~~y~~-~IpFnD-Dvt~rvle~L~~~~~~~-~~~~~~~~~~~~~~~ 244 (408)
T 1r76_A 171 APYRDAALKGIEYLLASQF-PNGGWPQVWPLE--GGYHD-AITYND-DALVHVAELLSDIAAGR-DGFGFVPPAIRTRAL 244 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSC-TTSCCBSBSSCC--CGGGG-SEECGG-GHHHHHHHHHHHHHHTC-TTCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-CCCCCcCcCccc--ccccc-CCCcCc-HHHHHHHHHHHHHHhcc-CcccccchhhhhhHH
Confidence 6789999999999999999 999997554211 11100 111111 13478888888887733 3 24899
Q ss_pred HHHHHHhhcccccccC-CCeeee
Q psy7540 192 NTALRALKVFKLPIYK-GGVQSK 213 (578)
Q Consensus 192 ~aA~kal~~f~~p~~~-GGvl~~ 213 (578)
.+++||++.+...=+. .|.+..
T Consensus 245 ~av~Rgi~~Ll~~Qe~~dGsw~r 267 (408)
T 1r76_A 245 EATNAAIHCIVETQVVQDGKRLG 267 (408)
T ss_dssp HHHHHHHHHHHHHSCEETTEECC
T ss_pred HHHHHHHHHHHHhhcccCCcccc
Confidence 9999999999888444 676553
No 32
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=79.69 E-value=6.9 Score=42.50 Aligned_cols=152 Identities=15% Similarity=0.084 Sum_probs=92.7
Q ss_pred eeecc-ccccccccC-c------------hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCch---hhh
Q psy7540 106 HLYGS-GSIDNLTLS-T------------SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWY---SAM 168 (578)
Q Consensus 106 ~~~g~-g~~~n~~l~-~------------~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~---SaM 168 (578)
+-|-+ |.++-+.|+ . +..+++..+.||.|+--.+ ..-|.|+..=+ +.. .++|- ++.
T Consensus 89 tIR~LGGLLSAy~Ls~g~~~~~~~~~~~~~~lL~kA~dLadrLlpAF~-TptgiP~~~vn-l~~-----~~~~~~~~~~~ 161 (475)
T 2ri9_A 89 TIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFD-TPSGVPYNNIN-ITS-----HGNDGATTNGL 161 (475)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHHHHGGGGC-SSSSCCCSEEC-TTT-----CCBCCCSEEEH
T ss_pred ehHhHhHHhHHHHhccCccccccccccchHHHHHHHHHHHHHHHHhhc-CCCCCCCceee-ccc-----CCCcCCCccch
Confidence 33444 667777776 3 4789999999999998888 44445554211 111 12222 223
Q ss_pred hhhHH-HHHHHHHHHhcCCChhHHHHHHHHhhcccccc-----cCCCeeeee--cCCcceeecCCCCCCceeechHHHHH
Q psy7540 169 GQGHA-ISVLSRAYYHSGGNVTYLNTALRALKVFKLPI-----YKGGVQSKF--LDKFPWYEEYPTTPAVFILNGFIYSL 240 (578)
Q Consensus 169 aQG~a-iSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~-----~~GGvl~~~--~~~~~wyeEYpt~p~~~VLNGfiysL 240 (578)
|..-. .-=|.|.-++| ||++|.++|+++.+.+.... ...|.+..+ .....|. ...+.+.|.+=|.
T Consensus 162 Ae~gsl~LEF~~LS~lT-Gd~~Y~~~a~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg~~~------~~~~~~Ga~~DS~ 234 (475)
T 2ri9_A 162 AVTGTLVLEWTRLSDLT-GDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFA------DSRVSWNGGDDSF 234 (475)
T ss_dssp HHHHSCHHHHHHHHHHH-SCTHHHHHHHHHHHHHHSCSSGGGCSBTTBCCSEEETTTCCBC------CCCBCSSTTTHHH
T ss_pred hccccceeeHHHHHHHh-CCHHHHHHHHHHHHHHHhhccccccCCCCCcceEEeCCCCccc------CCceeecCCcchH
Confidence 33222 23368999999 99999999999999886542 233444322 2334554 2334455555443
Q ss_pred Hhhhhh----hhhCCCccHHHHHHHHHHHHHHHhhhccC
Q psy7540 241 FGLYDL----VTLSPRSKQKEALSLYDQGITSLKRMLNM 275 (578)
Q Consensus 241 iGLYD~----~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~ 275 (578)
|+| +.++++. ..+.+++|.+.+.++++.|-.
T Consensus 235 ---YEYLlK~~il~g~~-~~~~~~m~~~a~~~i~~~l~~ 269 (475)
T 2ri9_A 235 ---YEYLIKMYVYDPKR-FETYKDRWVLAAESTIKHLKS 269 (475)
T ss_dssp ---HHHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHTEE
T ss_pred ---HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhcc
Confidence 333 2345543 246889999999999887753
No 33
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=76.90 E-value=9.2 Score=41.85 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=92.3
Q ss_pred ecc-ccccccccCch-------------HHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCch---hhhhh
Q psy7540 108 YGS-GSIDNLTLSTS-------------DHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWY---SAMGQ 170 (578)
Q Consensus 108 ~g~-g~~~n~~l~~~-------------~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~---SaMaQ 170 (578)
|-+ |.++-+.|+.+ ..+++..+.||.|+--.+ ..-|.|+..= .+..+ .++|- ++.|.
T Consensus 104 R~LGGLLSAy~Ls~~~~~~~~~~~~~~~~lL~kA~dLadrLlpAFd-TptgiP~~~v-nl~~~----~~~~~~~~~~~Ae 177 (503)
T 1hcu_A 104 RYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANGLKVAFT-TPSGVPDPTV-FFNPT----VRRSGASSNNVAE 177 (503)
T ss_dssp HHHHHHHHHHHHHHTTTGGGCCCHHHHHHHHHHHHHHHHHHGGGGC-SSSSCCCSEE-ECSSS----CEECCCSEEEHHH
T ss_pred hhHhHHHHHHHHccCccccccccccchHHHHHHHHHHHHHHHHhhc-CCCCCCccee-ecccC----CCCCCCCcccccc
Confidence 444 56777777553 789999999999998888 4444554420 01111 22222 23333
Q ss_pred hHH-HHHHHHHHHhcCCChhHHHHHHHHhhccccccc----CCCeeeee--cCCcceeecCCCCCCceeechHHHHHHhh
Q psy7540 171 GHA-ISVLSRAYYHSGGNVTYLNTALRALKVFKLPIY----KGGVQSKF--LDKFPWYEEYPTTPAVFILNGFIYSLFGL 243 (578)
Q Consensus 171 G~a-iSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~----~GGvl~~~--~~~~~wyeEYpt~p~~~VLNGfiysLiGL 243 (578)
.-. +-=|.|.-++| ||++|.++|+++.+.+..... ..|.+..+ .....|. ...+.+.|.+=|.
T Consensus 178 ~gsl~LEF~~LS~lT-Gd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~------~~~~~~Ga~~DS~--- 247 (503)
T 1hcu_A 178 IGSLVLEWTRLSDLT-GNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQ------DSSGSWSGLMDSF--- 247 (503)
T ss_dssp HTTSHHHHHHHHHHH-SCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCCBC------CCEECSSTTTHHH---
T ss_pred ccceeeehHHHHHHh-CChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCCCccc------CCeeeecCCCccH---
Confidence 322 23368999999 999999999999998765422 34443322 1234453 3344555555443
Q ss_pred hhh----hhhCCCccHHHHHHHHHHHHHHHhhhccC
Q psy7540 244 YDL----VTLSPRSKQKEALSLYDQGITSLKRMLNM 275 (578)
Q Consensus 244 YD~----~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~ 275 (578)
|+| +.++++. ..+.+++|.+.+.++++.|-.
T Consensus 248 YEYLlK~~il~g~~-~~~y~~m~~~a~~~i~~~l~~ 282 (503)
T 1hcu_A 248 YEYLIKMYLYDPVA-FAHYKDRWVLGADSTIGHLGS 282 (503)
T ss_dssp HHHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhcc
Confidence 443 2345543 246889999999999887753
No 34
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=75.01 E-value=5.5 Score=41.21 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHhcCC-CCCCC-ccc-cccccc-----ccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHH
Q psy7540 120 TSDHMAQFYATAEWLVNHQD-PKTGG-WPN-PVRRRI-----TAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYL 191 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd-~~~G~-W~~-~~~~~~-----~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL 191 (578)
.+++.+....+++|+++.+. .++|. ||- .++..- ........++|=-+. -|.+ -++.+||+.+ +|++|+
T Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~~~~~~WChG~-~Gi~-~~l~~~~~~~-~d~~~~ 301 (409)
T 2g0d_A 225 NEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGG-PGIS-LLYLYGGLAL-DNDYFV 301 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSH-HHHH-HHHHHHHHHT-TCHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCCCCCCcCCCCC-HHHH-HHHHHHHHHc-CCHHHH
Confidence 57789999999999988764 36777 875 222110 011134567784322 1232 3357999999 999999
Q ss_pred HHHHHHhhccc
Q psy7540 192 NTALRALKVFK 202 (578)
Q Consensus 192 ~aA~kal~~f~ 202 (578)
+.|+++++...
T Consensus 302 ~~a~~~~~~~~ 312 (409)
T 2g0d_A 302 DKAEKILESAM 312 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 35
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=62.45 E-value=88 Score=32.03 Aligned_cols=178 Identities=11% Similarity=-0.044 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHHHHhcCCCCC--CCccccccccc-------ccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhH
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKT--GGWPNPVRRRI-------TAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTY 190 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~--G~W~~~~~~~~-------~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kY 190 (578)
+++..+....+++.|++.+.... .+|....+..+ .+ ......||.-+++ |.+ .+|.+++....++++|
T Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~G~aHG~a-Gi~-~~L~~~~~~~~~~~~~ 228 (409)
T 2g0d_A 152 DEQYDDLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYP-LGCLNMGLAHGLA-GVG-CILAYAHIKGYSNEAS 228 (409)
T ss_dssp CGGGHHHHHHHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCT-TCBEECCTTTSHH-HHH-HHHHHHHHHTCCCHHH
T ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCceeecCCccccchhhhcCC-CCCccCCchhhHH-HHH-HHHHHHHHhCCCChhH
Confidence 46677888999999999764111 25765532210 01 0112334544433 444 5778888654138999
Q ss_pred HHHHHHHhhccccc---ccCCCeeee-ecCCcceeecC------CCC-CCcee---echHHHHHHhhhhhhhhCCCccHH
Q psy7540 191 LNTALRALKVFKLP---IYKGGVQSK-FLDKFPWYEEY------PTT-PAVFI---LNGFIYSLFGLYDLVTLSPRSKQK 256 (578)
Q Consensus 191 L~aA~kal~~f~~p---~~~GGvl~~-~~~~~~wyeEY------pt~-p~~~V---LNGfiysLiGLYD~~~~t~d~~~~ 256 (578)
+++++++++..... .++|...-. ... .++- ... ....- -=|..++++-+|. .++|+...
T Consensus 229 ~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~----~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~---~~~d~~~~ 301 (409)
T 2g0d_A 229 LSALQKIIFIYEKFELERKKQFLWKDGLVA----DELKKEKVIREASFIRDAWCYGGPGISLLYLYGGL---ALDNDYFV 301 (409)
T ss_dssp HHHHHHHHHHHHHHCCCGGGTTCCCSEECH----HHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHH---HTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCCCcccc----HhhhcccccccCCCCCCcCCCCCHHHHHHHHHHHH---HcCCHHHH
Confidence 99999999977432 122221000 000 0010 000 01111 1255666666665 77776433
Q ss_pred HHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcc
Q psy7540 257 EALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVP 328 (578)
Q Consensus 257 ~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~r 328 (578)
++ -.+.+..+.+. .+....+.+=|+.. --+..|..+++.|+|+.+.+.|.+
T Consensus 302 ~~---a~~~~~~~~~~-----~~~~~~~~LCHG~a-------------G~~~~l~~l~~~~~~~~~~~~a~~ 352 (409)
T 2g0d_A 302 DK---AEKILESAMQR-----KLGIDSYMICHGYS-------------GLIEICSLFKRLLNTKKFDSYMEE 352 (409)
T ss_dssp HH---HHHHHHHHHHH-----CTTCCSCCTTTSHH-------------HHHHHHHHHHHHHCCCTTHHHHHH
T ss_pred HH---HHHHHHHHHHh-----ccCCCCCCCCChHH-------------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22 23333333322 12234455656532 234558889999999999888774
No 36
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=57.56 E-value=12 Score=39.21 Aligned_cols=133 Identities=16% Similarity=0.115 Sum_probs=74.5
Q ss_pred hhhhhhHH--HHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCC-CceeechHHHHHHh
Q psy7540 166 SAMGQGHA--ISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTP-AVFILNGFIYSLFG 242 (578)
Q Consensus 166 SaMaQG~a--iSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p-~~~VLNGfiysLiG 242 (578)
-++|-|.+ +.+|++++..+ ++++++++++++++....-..+.|-.-.+.+ ++-...+ =-|-.-|.+.+++-
T Consensus 227 ~G~aHG~aGI~~~Ll~~~~~~-~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~-----~~~~~~~~wChG~~Gi~~~l~~ 300 (411)
T 3e6u_A 227 VGAAHGLAGIYYYLMQPSLQV-SQGKLHSLVKPSVDYVCQLKFPSGNYPPCIG-----DNRDLLVHWCHGAPGVIYMLIQ 300 (411)
T ss_dssp CSTTTSHHHHHHHHTCGGGCC-CHHHHHHTHHHHHHHHHHTCCTTSCCCSBTT-----CCCCCCCSSSSSHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHhhccCCCCCCCCC-----cccCccccccCCcHHHHHHHHH
Confidence 45555553 45778999999 9999999999999988765322231111000 0101000 01223466666665
Q ss_pred hhhhhhhCCCccHH-HHHHHHHHHHHHHhhhccCccCCC-cceecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCc
Q psy7540 243 LYDLVTLSPRSKQK-EALSLYDQGITSLKRMLNMYDTGS-GSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDK 320 (578)
Q Consensus 243 LYD~~~~t~d~~~~-~A~~lf~~Gi~SLk~~Lp~yD~g~-wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~ 320 (578)
++. +++|+... .|. +.+.++... |- ...+.+-|+. +-....|..+++.|+||
T Consensus 301 ~~~---~~~~~~~~~~a~----~~~~~~~~~------g~~~~~~~lChG~-------------aG~~~~ll~~~~~t~~~ 354 (411)
T 3e6u_A 301 AYK---VFREEKYLCDAY----QCADVIWQY------GLLKKGYGLCHGS-------------AGNAYAFLTLYNLTQDM 354 (411)
T ss_dssp HHH---HHCCHHHHHHHH----HHHHHHHHH------CSBTTCSCSTTSH-------------HHHHHHHHHHHHHHCCH
T ss_pred HHH---HcCCHHHHHHHH----HHHHHHHhc------CccCCCCceecCh-------------HHHHHHHHHHHHHhCCH
Confidence 554 67776432 333 333332221 11 1223455553 23355688999999999
Q ss_pred cccccCcccc
Q psy7540 321 IISDTGVPVT 330 (578)
Q Consensus 321 ~f~~~A~rW~ 330 (578)
.+++.|.+..
T Consensus 355 ~~~~~A~~~~ 364 (411)
T 3e6u_A 355 KYLYRACKFA 364 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877543
No 37
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=54.64 E-value=32 Score=38.51 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCC-CCccccc-----ccccccCCCCCCCCc---hhhhhhhHHHHHHHHHHHhcCCC----
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKT-GGWPNPV-----RRRITAGIGDLKPGW---YSAMGQGHAISVLSRAYYHSGGN---- 187 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~-G~W~~~~-----~~~~~~~~~~L~~gW---~SaMaQG~aiSvL~RAY~~t~gD---- 187 (578)
+..++..+-.+|||++-|++++ |.--..+ ++...+.-.+ .|-+ .|+-+-|..+.+|+.|+.++ ++
T Consensus 232 ~d~ldeikwg~Dyllk~q~~~~~g~~y~~vgd~~~~~~~~Pe~~~-~~R~~~~~~s~~a~e~AAAlAaAS~vf-k~~D~~ 309 (639)
T 1clc_A 232 PDFLDELKYEIDWILTMQYPDGSGRVAHKVSTRNFGGFIMPENEH-DERFFVPWSSAATADFVAMTAMAARIF-RPYDPQ 309 (639)
T ss_dssp CHHHHHHHHHHHHHHTTBCTTSSCCBEEEEECSSCCCSCCGGGCC-SCCEEEEECHHHHHHHHHHHHHHHHHH-TTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCchhcC-CCceEecCCcHHHHHHHHHHHHHHHhc-cccCHH
Confidence 4578888999999999988444 5422221 1101010000 1111 24566799999999999999 75
Q ss_pred --hhHHHHHHHHhhcccccccCCCeeeee-cCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH
Q psy7540 188 --VTYLNTALRALKVFKLPIYKGGVQSKF-LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK 256 (578)
Q Consensus 188 --~kYL~aA~kal~~f~~p~~~GGvl~~~-~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~ 256 (578)
+++|++|+++.+.-...... .-... .....+| .. +-.-+-++.+-..||- .|+|+.+.
T Consensus 310 yA~~~L~~Ak~l~~fA~~~~~~--~y~~~~~~~~g~Y---~s---s~~~DEl~WAAawLy~---ATgd~~Yl 370 (639)
T 1clc_A 310 YAEKCINAAKVSYEFLKNNPAN--VFANQSGFSTGEY---AT---VSDADDRLWAAAEMWE---TLGDEEYL 370 (639)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSC--CCCCCTTCCSCCC---CC---SCSHHHHHHHHHHHHH---HHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCC--ccCCCcccccccc---CC---CCcchHHHHHHHHHHH---HhCCHHHH
Confidence 67899999998876653221 00000 0011222 21 1123445566666665 88887553
No 38
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=53.47 E-value=29 Score=38.62 Aligned_cols=82 Identities=13% Similarity=0.074 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---cccccccccc----cCC----CCC-CCCc---hhhhhhhHHHHHHHHHHHhcC
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGG---WPNPVRRRIT----AGI----GDL-KPGW---YSAMGQGHAISVLSRAYYHSG 185 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~---W~~~~~~~~~----~~~----~~L-~~gW---~SaMaQG~aiSvL~RAY~~t~ 185 (578)
+..++..+-.+|||++-|. ++|. ....|.++.. .+. +++ .+-+ .|+.+-+..+.+|+.|+.++
T Consensus 227 ~d~ldeikwg~D~llk~q~-~~g~~~~~~g~v~~~~~D~~w~g~~~~Pe~~~~~R~~~~p~t~~~~~~AAalAaas~vf- 304 (609)
T 1ut9_A 227 PDILDEARWEIEFFKKMQV-TEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARLW- 304 (609)
T ss_dssp CHHHHHHHHHHHHHHHHBC-CTTTCGGGTTCEECEEEESSCCCSSCCGGGCCSBEEECCEEHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCCcceEEEEecCCCCCcccCCCCCChhhCCCceeecCCCcHHHHHHHHHHHHHHHhc-
Confidence 4678899999999999888 5552 1111111100 000 000 0001 24456677888899999999
Q ss_pred CC------hhHHHHHHHHhhccccc
Q psy7540 186 GN------VTYLNTALRALKVFKLP 204 (578)
Q Consensus 186 gD------~kYL~aA~kal~~f~~p 204 (578)
++ +++|++|+++.+.-...
T Consensus 305 k~~d~~ya~~~L~~A~~~~~fa~~~ 329 (609)
T 1ut9_A 305 KDYDPTFAADCLEKAEIAWQAALKH 329 (609)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 76 68999999999877654
No 39
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=48.39 E-value=25 Score=38.18 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=59.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHhhhcccccccCCCceeec--cCCCceEeeCCCCCCceeehhHHHHHHHhHhhh----hc
Q psy7540 413 VLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKF--LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLV----TL 486 (578)
Q Consensus 413 vl~RAY~~t~gd~~YL~aA~kal~~f~~p~~~GGv~~~~--~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~----~~ 486 (578)
=|.|-.++| ||++|.++|+++.+.+.-....-|.+-.+ ...+.|- ...+.+.|.+=|. |+|- .+
T Consensus 181 EF~~LS~lT-Gd~~Y~~~a~~~~~~l~~~~~~~GL~p~~i~~~tg~~~------~~~~~~Ga~~DS~---YEYLlK~~il 250 (478)
T 1nxc_A 181 EFMHLSHLS-GDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWG------QHHVSVGGLGDSF---YEYLLKAWLM 250 (478)
T ss_dssp HHHHHHHHH-CCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBC------SCEECSSTTTHHH---HHHHHHHHHH
T ss_pred hHHHHHHHH-CChHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCcc------CceeeecCCCchH---HHHHHHHHHH
Confidence 357788888 79999999999988776443344665332 2344552 2355677777776 5552 22
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhc
Q psy7540 487 SPRSKQKEALSLYDQGITSLKRMLN 511 (578)
Q Consensus 487 ~~~~~~~~A~~lF~~Gl~sLk~~Lp 511 (578)
+++ .+.+.+++|++.++++++.|-
T Consensus 251 ~g~-~d~~~~~m~~~a~~~i~~~l~ 274 (478)
T 1nxc_A 251 SDK-TDLEAKKMYFDAVQAIETHLI 274 (478)
T ss_dssp TTT-CCHHHHHHHHHHHHHHHHHTE
T ss_pred cCC-chHHHHHHHHHHHHHHHHHhc
Confidence 332 236789999999999999874
No 40
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=43.56 E-value=78 Score=35.92 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccc-cc------ccc--cCC--CCCCCCchhhhhhhHHHHHHHHHHHhc-C-CCh
Q psy7540 122 DHMAQFYATAEWLVNHQDPKTGGWPNPV-RR------RIT--AGI--GDLKPGWYSAMGQGHAISVLSRAYYHS-G-GNV 188 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~~~G~W~~~~-~~------~~~--~~~--~~L~~gW~SaMaQG~aiSvL~RAY~~t-~-gD~ 188 (578)
...+...++++||++.|. +||+|.-.. ++ .+. +.+ ..+.++ +.-+-+.++..|..+-... + +++
T Consensus 478 ~~~~~i~~av~wLls~Q~-~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s--~v~~Ta~vL~aL~~~~~~~~~~~~~ 554 (732)
T 1w6k_A 478 IPRERLCDAVAVLLNMRN-PDGGFATYETKRGGHLLELLNPSEVFGDIMIDYT--YVECTSAVMQALKYFHKRFPEHRAA 554 (732)
T ss_dssp CCHHHHHHHHHHHHTTCC-TTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCC--BHHHHHHHHHHHHHHHHHCTTSSHH
T ss_pred hhHHHHHHHHHHHHHhcC-CCCCEEeecCCCchHHHhhCcchhcccccccCCC--cchHHHHHHHHHHHhccccccccch
Confidence 345677899999999999 999996221 11 010 000 011111 2334456666666554432 0 224
Q ss_pred hHHHHHHHHhhccccc-ccCCC
Q psy7540 189 TYLNTALRALKVFKLP-IYKGG 209 (578)
Q Consensus 189 kYL~aA~kal~~f~~p-~~~GG 209 (578)
++-.+.++|+++.... ..+||
T Consensus 555 ~~~~~i~rAv~yL~~~Q~~DGs 576 (732)
T 1w6k_A 555 EIRETLTQGLEFCRRQQRADGS 576 (732)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSC
T ss_pred hhHHHHHHHHHHHHhhcCCCCC
Confidence 5677888888876644 33444
No 41
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=41.79 E-value=30 Score=38.41 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccccccccc-CCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhccc
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITA-GIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFK 202 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~-~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~ 202 (578)
.....++++||++.|. ++|+|..... .+.+ .+. +.+--+.-.-+.|+..|..+ +.. ...+.++++++..
T Consensus 513 ~~~i~rav~~L~s~Q~-~DGgWg~~~~-sy~~~~~~--~~~~s~v~~Ta~ALlaL~~a-----g~~-~~~~i~rav~wL~ 582 (631)
T 2sqc_A 513 EPYIQKALDWVEQHQN-PDGGWGEDCR-SYEDPAYA--GKGASTPSQTAWALMALIAG-----GRA-ESEAARRGVQYLV 582 (631)
T ss_dssp SHHHHHHHHHHHHTCC-TTSCCCCCGG-GGTCGGGT--TCSSCCHHHHHHHHHHHHHT-----TCS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-CCCCcCCccc-cccccccC--CCCCCCHHHHHHHHHHHHHc-----CCC-ChHHHHHHHHHHH
Confidence 3456779999999999 9999953321 1100 000 00011222234455555443 221 1245667776665
Q ss_pred cc-ccCCCeeeeecC----CcceeecCCCCCCceeechHHHHHHhhhhhhh
Q psy7540 203 LP-IYKGGVQSKFLD----KFPWYEEYPTTPAVFILNGFIYSLFGLYDLVT 248 (578)
Q Consensus 203 ~p-~~~GGvl~~~~~----~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~ 248 (578)
.- .++||+-..... ...+|-+|+.= -++|.|..|-.|.+
T Consensus 583 ~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y-------~~~f~l~AL~~y~~ 626 (631)
T 2sqc_A 583 ETQRPDGGWDEPYYTGTGFPGDFYLGYTMY-------RHVFPTLALGRYKQ 626 (631)
T ss_dssp HHCCTTSCCCCCSCCEEEETTTEEEEETTH-------HHHHHHHHHHHHHH
T ss_pred hccCCCCCcCCCCcccccccccceeeccch-------hhHHHHHHHHHHHH
Confidence 43 567886544321 12566666632 25688888877654
No 42
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=35.64 E-value=68 Score=34.09 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCC--------------CcccccccccccCCCCCCCCc------hhhhhhhHHHHHHHHH
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTG--------------GWPNPVRRRITAGIGDLKPGW------YSAMGQGHAISVLSRA 180 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G--------------~W~~~~~~~~~~~~~~L~~gW------~SaMaQG~aiSvL~RA 180 (578)
+..++..+=.+|||++-|+ ++| .|.-+.+. ..-+|-+ -++=+-|..+.+|+.|
T Consensus 90 ~d~ldeikwg~D~llk~~~-~~g~~y~qVgd~~~Dh~~w~~Pe~~------~~~R~~y~~~~~~pgs~~a~~~AAalA~a 162 (433)
T 1ks8_A 90 DDGRKAVKWATDYFIKAHT-SQNEFYGQVGQGDADHAFWGRPEDM------TMARPAYKIDTSRPGSDLAGETAAALAAA 162 (433)
T ss_dssp HHHHHHHHHHHHHHHHHCC-BTTBEEEEESCHHHHHTCCSCGGGC------CSCCCEEEECSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCcEEEEeCCCCcCCcccCCHhhC------CCCCceeeccCCCCccHHHHHHHHHHHHH
Confidence 5678999999999999998 544 33322211 1111111 1233458999999999
Q ss_pred HHhcCCC------hhHHHHHHHHhhcccccccCCCeeeee-cCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCc
Q psy7540 181 YYHSGGN------VTYLNTALRALKVFKLPIYKGGVQSKF-LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRS 253 (578)
Q Consensus 181 Y~~t~gD------~kYL~aA~kal~~f~~p~~~GGvl~~~-~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~ 253 (578)
+.+. ++ +++|++|+++.+.-+.... .-... .+...+| .. +-.-+-++.+-.-||- .|+|+
T Consensus 163 s~vf-k~~D~~yA~~~L~~A~~~~~fa~~~~~---~y~~~~~~~~~~Y---~s---s~~~DE~~WAAa~Ly~---aTgd~ 229 (433)
T 1ks8_A 163 SIVF-RNVDGTYSNNLLTHARQLFDFANNYRG---KYSDSITDARNFY---AS---ADYRDELVWAAAWLYR---ATNDN 229 (433)
T ss_dssp HHHT-TTTCHHHHHHHHHHHHHHHHHHHHSCC---CHHHHSGGGGGTS---CC---CCTHHHHHHHHHHHHH---HHCCH
T ss_pred HHhc-cccCHHHHHHHHHHHHHHHHHHHHCCC---cccCCCCcCCCCC---CC---CCcccHHHHHHHHHHH---HhCCH
Confidence 9999 75 5789999999987665421 11100 0111232 22 1122445666666765 88887
Q ss_pred cHH
Q psy7540 254 KQK 256 (578)
Q Consensus 254 ~~~ 256 (578)
.+.
T Consensus 230 ~Yl 232 (433)
T 1ks8_A 230 TYL 232 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 43
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=34.72 E-value=89 Score=33.28 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccc-----cccc---ccCCCCCCCC-ch------hhhhhhHHHHHHHHHHHhcC
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPV-----RRRI---TAGIGDLKPG-WY------SAMGQGHAISVLSRAYYHSG 185 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~-----~~~~---~~~~~~L~~g-W~------SaMaQG~aiSvL~RAY~~t~ 185 (578)
+..++..+=.+|||++-+. ++|..-..| ++.. .+....-+|. |. ++-+-|..+.+|+.|+.++
T Consensus 92 ~d~ldeikwg~D~llk~~~-~~~~~y~qVgd~~~Dh~~w~~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vf- 169 (441)
T 1ia6_A 92 TKMLQQLKYFTDYFLKSHP-NSTTFYYQVGEGNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNY- 169 (441)
T ss_dssp HHHHHHHHHHHHHHHHTCC-STTCEEEEESCHHHHTTCCSCGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCcEEEEeCCCCccccccCChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhc-
Confidence 6678999999999999754 433221111 1110 0111111233 31 3445689999999999999
Q ss_pred CC------hhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccHH
Q psy7540 186 GN------VTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQK 256 (578)
Q Consensus 186 gD------~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~~ 256 (578)
++ +++|++|+++.+.-+... |.- ....+ |.. +-.-+-++.+-.-||- .|+|+.+.
T Consensus 170 k~~D~~yA~~~L~~A~~~~~fa~~~~---g~~----~~~~~---Y~s---s~~~DE~~WAAa~Ly~---aTgd~~Yl 230 (441)
T 1ia6_A 170 KNIDSAYATKCLNAAKELYAMGKANQ---GVG----NGQSF---YQA---TSFGDDLAWAATWLYT---ATNDSTYI 230 (441)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHSC---SCC----CCTTT---SCC---CCSHHHHHHHHHHHHH---HHCCTHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHcC---CCC----CCCCC---CCC---CCchhHHHHHHHHHHH---HhCCHHHH
Confidence 76 678999999998877653 210 11122 222 2233445666666766 88887654
No 44
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=34.11 E-value=59 Score=33.35 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCc---hhhhhh-hHHHHHHHHHHHhcCCC-------hhHHH
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGW---YSAMGQ-GHAISVLSRAYYHSGGN-------VTYLN 192 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW---~SaMaQ-G~aiSvL~RAY~~t~gD-------~kYL~ 192 (578)
.....++.+||++.|. ++|+|.-.... + . .++..|+ -|..++ +.++-.|.++-... .+ .++-.
T Consensus 141 ~~~i~~a~~~L~~~Q~-~dG~~~~~~~~-~-~--~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~-~~~~~~~~~~~~~~ 214 (367)
T 1hzf_A 141 PEKLQETSNWLLSQQQ-ADGSFQDPCPV-L-D--RSMQGGLVGNDETVALTAFVTIALHHGLAVF-QDEGAEPLKQRVEA 214 (367)
T ss_dssp HHHHHHHHHHHGGGBC-TTSCBCCSSCC-S-C--GGGGGGGSSTTHHHHHHHHHHHHHHHHHTTC-CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-cCCCccccccc-c-c--ccccCCCCCCcccccchHHHHHHHHhhhccc-cccccchhhhhhHH
Confidence 3566778999999999 99999633111 1 0 1122122 122333 55566666665544 44 33455
Q ss_pred HHHHHhhccc
Q psy7540 193 TALRALKVFK 202 (578)
Q Consensus 193 aA~kal~~f~ 202 (578)
+.+||++.+.
T Consensus 215 ~i~ra~~yL~ 224 (367)
T 1hzf_A 215 SISKASSFLG 224 (367)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666776654
No 45
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=33.84 E-value=70 Score=34.91 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=59.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHhhhcccccc----cCCCceeec--cCCCceEeeCCCCCCceeehhHHHHHHHhHhhh--
Q psy7540 413 VLSRAYYHSGGNVTYLNTALRALKVFKLPI----YKGGVQSKF--LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLV-- 484 (578)
Q Consensus 413 vl~RAY~~t~gd~~YL~aA~kal~~f~~p~----~~GGv~~~~--~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~-- 484 (578)
=|.|--++| ||++|.++|+++++.+.-.- ..-|.+-.+ ...+.|- ...+.+.|.+=|. |+|-
T Consensus 184 EF~~LS~lT-Gd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~------~~~~~~Ga~~DS~---YEYLlK 253 (503)
T 1hcu_A 184 EWTRLSDLT-GNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQ------DSSGSWSGLMDSF---YEYLIK 253 (503)
T ss_dssp HHHHHHHHH-SCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCCBC------CCEECSSTTTHHH---HHHHHH
T ss_pred ehHHHHHHh-CChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCCCccc------CCeeeecCCCccH---HHHHHH
Confidence 467777788 79999999999998876432 234655332 2344553 3455677777776 5552
Q ss_pred --hcCCcchhHHHHHHHHHHHHHHHHHhc
Q psy7540 485 --TLSPRSKQKEALSLYDQGITSLKRMLN 511 (578)
Q Consensus 485 --~~~~~~~~~~A~~lF~~Gl~sLk~~Lp 511 (578)
.++++ ...+.+++|++.++++++.|-
T Consensus 254 ~~il~g~-~~~~y~~m~~~a~~~i~~~l~ 281 (503)
T 1hcu_A 254 MYLYDPV-AFAHYKDRWVLGADSTIGHLG 281 (503)
T ss_dssp HHHHCTT-TTHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHhc
Confidence 23433 235789999999999998875
No 46
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=33.37 E-value=66 Score=35.77 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccccc-cccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhc
Q psy7540 122 DHMAQFYATAEWLVNHQDPKTGGWPNPVRRR-ITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKV 200 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~-~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~ 200 (578)
+.++++...||.++..+. .+| +.+++... +.+ ..+ .|-|.+---...-++..|+.++ ++.+|++.|++.++.
T Consensus 434 ~~~~~~~~~ad~~~~~~~-~~~-~g~~~~~~~~t~--gg~--~WGs~~~~~n~a~~~~~a~~~~-~~~~y~~~A~~qidY 506 (609)
T 1ut9_A 434 KARNNIAKAADRWLENIE-EQG-YRLPIKQAEDER--GGY--PWGSNSFILNQMIVMGYAYDFT-GDSKYLDGMFDGISY 506 (609)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCT-TCCSCCCCSSSS--CSC--CTTHHHHHHHHHHHHHHHHHHH-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc-cCC-CCccccccccCC--CCc--ccccCHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHh
Confidence 567889999999988776 332 22222110 101 112 4877653222333456889999 999999999999987
Q ss_pred ccc
Q psy7540 201 FKL 203 (578)
Q Consensus 201 f~~ 203 (578)
..=
T Consensus 507 iLG 509 (609)
T 1ut9_A 507 LLG 509 (609)
T ss_dssp HBT
T ss_pred ccC
Confidence 663
No 47
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=31.96 E-value=2e+02 Score=35.27 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhccc
Q psy7540 123 HMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFK 202 (578)
Q Consensus 123 ~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~ 202 (578)
..+....+.+|++..|. +||+|..+-.+. + ..-...|.+ +.++.+|.+|-+...-|+.=++. |+++..
T Consensus 981 a~~~i~~g~~~ll~~q~-~dGgf~~f~~~~---~-~~~~s~wlT----Ayv~~~l~~a~~~~~v~~~~l~~---a~~wL~ 1048 (1451)
T 4acq_A 981 AIGYLNTGYQRQLNYKH-YDGSYSTFGERY---G-RNQGNTWLT----AFVLKTFAQARAYIFIDEAHITQ---ALIWLS 1048 (1451)
T ss_dssp HHHHHHHHHHHHGGGBC-TTSCBCSSTTGG---G-CCCCCHHHH----HHHHHHHHHHTTTSCCCTHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHhhcC-CCCCeeeccCCC---C-CCCCchhHH----HHHHHHHHHhhhhcccCHHHHHH---HHHHHH
Confidence 34456788899999999 999997552110 0 012556887 67788888886543145554444 444554
Q ss_pred cc
Q psy7540 203 LP 204 (578)
Q Consensus 203 ~p 204 (578)
-.
T Consensus 1049 ~~ 1050 (1451)
T 4acq_A 1049 QR 1050 (1451)
T ss_dssp HT
T ss_pred hh
Confidence 33
No 48
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=30.22 E-value=48 Score=36.77 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccc-c-ccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcc
Q psy7540 124 MAQFYATAEWLVNHQDPKTGGWPNPVRRR-I-TAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVF 201 (578)
Q Consensus 124 ~~~F~~aAdWLl~~qd~~~G~W~~~~~~~-~-~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f 201 (578)
.....+|.+||.+.|....|.|.+..+.- . +.++..-..+|-+.-.-+.++..|.++.. . .++.+.++..+|+++.
T Consensus 330 ~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~-~-~~~~~~~~l~~a~~wL 407 (631)
T 2sqc_A 330 HDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRL-P-DERRRRDAMTKGFRWI 407 (631)
T ss_dssp CHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCC-S-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCC-C-ccchhHHHHHHHHHHH
Confidence 44677899999999973558886543221 0 01112222233344445567777777664 4 4566888888998887
Q ss_pred ccc-ccCCCeee
Q psy7540 202 KLP-IYKGGVQS 212 (578)
Q Consensus 202 ~~p-~~~GGvl~ 212 (578)
..- .++||+-.
T Consensus 408 ls~Q~~dGgf~~ 419 (631)
T 2sqc_A 408 VGMQSSNGGWGA 419 (631)
T ss_dssp HHTCCTTSCBCS
T ss_pred HhhcCCCCCCCc
Confidence 544 56788743
No 49
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=30.19 E-value=50 Score=36.18 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC-CcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHH-HHHhh
Q psy7540 122 DHMAQFYATAEWLVNHQDPKTG-GWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTA-LRALK 199 (578)
Q Consensus 122 ~~~~~F~~aAdWLl~~qd~~~G-~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA-~kal~ 199 (578)
+.++++...||.++..++ .++ +-+ +. ..++ .|-|.+.-.....+|+.|++++ ++++|++.| ++.++
T Consensus 369 ~~~~~~~~~ad~~~~~~~-~~~~g~~--~~---~~~~-----~WGsn~~~~n~a~~l~~a~~~~-~~~~y~~~aa~~qid 436 (537)
T 3gzk_A 369 KVKSRLLRELDALAAMAE-SHPFGIP--MR---DDDF-----IWGSNMVLLNRAMAFLLAEGVG-VLHPAAHTVAQRAAD 436 (537)
T ss_dssp HHHHHHHHHHHHHHHHHH-HSTTCCS--CC---GGGC-----CTTHHHHHHHHHHHHHHHGGGT-CCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCcee--ec---CCCC-----cccchHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHhHH
Confidence 457888889999987765 332 211 10 0111 4878776666666678899999 999999999 99999
Q ss_pred cccc
Q psy7540 200 VFKL 203 (578)
Q Consensus 200 ~f~~ 203 (578)
...=
T Consensus 437 YiLG 440 (537)
T 3gzk_A 437 YLFG 440 (537)
T ss_dssp HHBT
T ss_pred HhcC
Confidence 7763
No 50
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=30.17 E-value=70 Score=35.30 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=60.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHhhhcccccc-cCCCceeec--cCCCceEeeCCCCCCceeehhHHHHHHHhHhhh----h
Q psy7540 413 VLSRAYYHSGGNVTYLNTALRALKVFKLPI-YKGGVQSKF--LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLV----T 485 (578)
Q Consensus 413 vl~RAY~~t~gd~~YL~aA~kal~~f~~p~-~~GGv~~~~--~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~----~ 485 (578)
=|.|-.++| ||++|.++|+++++.+.-.. ..-|.+-.+ ...+.|-. .+.+.+.|.+=|. |+|- .
T Consensus 243 EF~~LS~LT-Gd~~Y~~~a~r~~~~l~~~~~~~~GL~p~~i~~~tG~~~~-----~~~~~lGa~~DS~---YEYLlK~~i 313 (538)
T 1x9d_A 243 EFRELSRLT-GDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTH-----LGVFTLGARADSY---YEYLLKQWI 313 (538)
T ss_dssp HHHHHHHHH-CCTHHHHHHHHHHHHHHTCSCCBTTBCCSEEETTTCCEES-----TTEECSSTTTHHH---HHHHHHHHH
T ss_pred eHHHHHHHh-CCcHHHHHHHHHHHHHHhcccCCCCCcceEEeCCCCCccC-----CcceeecCCccHH---HHHHHHHHH
Confidence 467777788 79999999999998876544 344555332 23445532 2255677777776 5542 2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHhc
Q psy7540 486 LSPRSKQKEALSLYDQGITSLKRMLN 511 (578)
Q Consensus 486 ~~~~~~~~~A~~lF~~Gl~sLk~~Lp 511 (578)
+++. .+++.+++|++.++++++.|-
T Consensus 314 l~g~-~d~~y~~my~~a~~~i~~~L~ 338 (538)
T 1x9d_A 314 QGGK-QETQLLEDYVEAIEGVRTHLL 338 (538)
T ss_dssp HTTS-CCHHHHHHHHHHHHHHHHHTE
T ss_pred HcCC-chHHHHHHHHHHHHHHHHHhc
Confidence 2332 246799999999999999883
No 51
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=26.63 E-value=1.1e+02 Score=32.44 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHh-cCCChhHHHHHHHHh
Q psy7540 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYH-SGGNVTYLNTALRAL 198 (578)
Q Consensus 120 ~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~-t~gD~kYL~aA~kal 198 (578)
.+++++.+...+|.++..+...-||-++ ...|-|..--....-++..++++ + ++.+|++.|++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~tp~Gl~~-------------~~~WGs~~~~~n~a~l~~~~~~~~~-~~~~y~~~A~~ql 335 (433)
T 1ks8_A 270 KQAYKDTVQSYVNYLINNQQKTPKGLLY-------------IDMWGTLRHAANAAFIMLEAAELGL-SASSYRQFAQTQI 335 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTSCBCTTSCBC-------------CCSTTHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCcCCCCcee-------------ecCCchhHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHhH
Confidence 3678888888899999776522233221 23576543333334455677888 8 9999999999999
Q ss_pred hcccc
Q psy7540 199 KVFKL 203 (578)
Q Consensus 199 ~~f~~ 203 (578)
+...=
T Consensus 336 dYiLG 340 (433)
T 1ks8_A 336 DYALG 340 (433)
T ss_dssp HHHHT
T ss_pred hhccC
Confidence 98773
No 52
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.96 E-value=30 Score=27.69 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCCCCC
Q psy7540 128 YATAEWLVNHQDPKTG 143 (578)
Q Consensus 128 ~~aAdWLl~~qd~~~G 143 (578)
-+|+|||-.|.||..|
T Consensus 48 ErAaDWLFSH~D~~~~ 63 (63)
T 1wgn_A 48 EQILDYLFAHSGPSSG 63 (63)
T ss_dssp HHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHhCCCCCCC
Confidence 4689999999996554
No 53
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=24.50 E-value=45 Score=37.57 Aligned_cols=38 Identities=24% Similarity=0.082 Sum_probs=30.2
Q ss_pred CCchhhhh--h--hHHHHHHHHHHHhcCCChhHHHHHHHHhhc
Q psy7540 162 PGWYSAMG--Q--GHAISVLSRAYYHSGGNVTYLNTALRALKV 200 (578)
Q Consensus 162 ~gW~SaMa--Q--G~aiSvL~RAY~~t~gD~kYL~aA~kal~~ 200 (578)
.||-+.|- + ++.+..|+.||.+| ||++|++.|++.+..
T Consensus 196 ~g~~~~~~~~r~~~~~l~~la~ay~lt-gd~kya~~a~~~L~~ 237 (776)
T 3a0o_A 196 TLWRQMYIDCQEVIYAIRHLAIAGRVL-GRDDLLDASRKWLLA 237 (776)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 44554443 2 88999999999999 999999999997643
No 54
>1qaz_A Protein (alginate lyase A1-III); crystals,; 1.78A {Sphingomonas SP} SCOP: a.102.3.1 PDB: 1hv6_A 3ew4_A* 4e25_A* 3evh_A 3evl_A* 4e1y_A 4e23_A*
Probab=24.44 E-value=47 Score=34.59 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhhcc
Q psy7540 173 AISVLSRAYYHSGGNVTYLNTALRALKVF 201 (578)
Q Consensus 173 aiSvL~RAY~~t~gD~kYL~aA~kal~~f 201 (578)
++..|..||.+| ||++|.+.|.+-|+..
T Consensus 90 a~~~lALaw~~T-Gd~~YA~~A~~~L~aW 117 (351)
T 1qaz_A 90 ISATLGNLYVAT-GKPVYATCLLNMLDKW 117 (351)
T ss_dssp HHHHHHHHHHHH-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence 566667999999 9999999999888733
No 55
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=24.09 E-value=1.5e+02 Score=32.88 Aligned_cols=116 Identities=9% Similarity=0.126 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCC---------C-----CcccccccccccCCCCCCCCch---h---hhhhhHHHHHHHHH
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKT---------G-----GWPNPVRRRITAGIGDLKPGWY---S---AMGQGHAISVLSRA 180 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~---------G-----~W~~~~~~~~~~~~~~L~~gW~---S---aMaQG~aiSvL~RA 180 (578)
+..++..+=.+|||++-|. ++ | .|.-+ +.+..-+|-|. + +=+-|..+.+|+.|
T Consensus 91 ~d~ldeikwg~Dyllk~~~-~~~~~y~qVGdg~~DH~~w~~p------e~m~~~r~~y~~~~~~pgsd~a~~~AAAlAaA 163 (605)
T 1tf4_A 91 PYLKDNLRWVNDYFIKAHP-SPNVLYVQVGDGDADHKWWGPA------EVMPMERPSFKVDPSCPGSDVAAETAAAMAAS 163 (605)
T ss_dssp HHHHHHHHHHHHHHHHTCS-BTTBEEEEESCHHHHHHCCSCG------GGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcc-CCCeEEEEeCCCCcCccccCCh------hhCCCCCceeEecCCCCcchHHHHHHHHHHHH
Confidence 5678999999999999886 43 2 24211 11111233332 1 22357888899999
Q ss_pred HHhcCCC------hhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCcc
Q psy7540 181 YYHSGGN------VTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSK 254 (578)
Q Consensus 181 Y~~t~gD------~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~ 254 (578)
+.++ ++ +++|++|+++.+.-+.... .-........+|..+. -.-+-++.+-..||- .|+|+.
T Consensus 164 S~vf-k~~D~~yA~~~L~~Ak~~~~fA~~~~g---~y~~~~~~~~~Y~s~s-----~~~DEl~WAAawLy~---ATgd~~ 231 (605)
T 1tf4_A 164 SIVF-ADDDPAYAATLVQHAKQLYTFADTYRG---VYSDCVPAGAFYNSWS-----GYQDELVWGAYWLYK---ATGDDS 231 (605)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHHHHHHHSCC---CGGGTSTTHHHHCCSS-----CSHHHHHHHHHHHHH---HHCCHH
T ss_pred Hhhc-cccCHHHHHHHHHHHHHHHHHHHHcCC---CcCCCCCccccccCCC-----CCchHHHHHHHHHHH---HhCCHH
Confidence 9999 74 5789999999887665321 1000000112333321 122445677777776 888875
Q ss_pred H
Q psy7540 255 Q 255 (578)
Q Consensus 255 ~ 255 (578)
+
T Consensus 232 Y 232 (605)
T 1tf4_A 232 Y 232 (605)
T ss_dssp H
T ss_pred H
Confidence 4
No 56
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=24.02 E-value=2.4e+02 Score=28.75 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhc
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKV 200 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~ 200 (578)
++..++...+.+||+..|. +||+|...- . + -...|.+ +.++.+|.+|-+...-|+.-++.| +++
T Consensus 87 ~~~~~~i~~g~~~ll~~Q~-~dGgf~~~~-~----~---~~~~~lT----a~v~~~l~~a~~~~~v~~~~i~~a---~~~ 150 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQFRK-ADGSYAAWL-S----R---DSSTWLT----AFVLKVLSLAQEQVGGSPEKLQET---SNW 150 (367)
T ss_dssp HHHHHHHHHHHHHHHTTBC-TTSCBCSST-T----S---CCCHHHH----HHHHHHHHHHGGGTCCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHhccC-CCCCeeccC-C----C---CCcHHHH----HHHHHHHHHHHHHhCCCHHHHHHH---HHH
Confidence 4567788999999999999 999996432 1 1 1356877 457888888866541355555544 444
Q ss_pred cccc-ccCCCe
Q psy7540 201 FKLP-IYKGGV 210 (578)
Q Consensus 201 f~~p-~~~GGv 210 (578)
.... .++|++
T Consensus 151 L~~~Q~~dG~~ 161 (367)
T 1hzf_A 151 LLSQQQADGSF 161 (367)
T ss_dssp HGGGBCTTSCB
T ss_pred HHHhhccCCCc
Confidence 4433 344544
No 57
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=20.45 E-value=4.2e+02 Score=29.43 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhc
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKV 200 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~ 200 (578)
++.+++...+.+|+.++.. . + ..++ ++++..=. ..+-..+-.|+.| +|++||+.|..-.+.
T Consensus 274 ~~~L~aA~~a~~fa~~~~~-~-------y---~~~g----~~~~~De~---~~~WAA~eLy~AT-gd~~YL~~a~~~a~~ 334 (586)
T 3h7l_A 274 QKYRNAAENGYWHLKEHNT-Q-------Y---LNDG----EENIIDEY---CALLASVELFKAT-KETRYLEESRLWAQR 334 (586)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H-------H---STTS----CCCHHHHH---HHHHHHHHHHHHH-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc-c-------c---cCCC----CccchhHH---HHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 5677888888888888753 1 1 0011 12322211 1245567789999 999999999886655
Q ss_pred ccc---cccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCc-cHHHHHHHHHHHHH
Q psy7540 201 FKL---PIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRS-KQKEALSLYDQGIT 267 (578)
Q Consensus 201 f~~---p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~-~~~~A~~lf~~Gi~ 267 (578)
+.. +.+.||+-..-.++ ...+.|=-.+-=.+++.|-.+..++++. ..++|++...+.+.
T Consensus 335 l~~~~~~~~~~g~~w~~~d~--------~~r~~~d~a~~gl~~iaLl~l~~~~~d~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 335 LVARQMSDEQIQHFWSANQD--------GSRPYFHAAEAGLPTIALCEYLAIEDDSVQTESVKCIVNRACE 397 (586)
T ss_dssp HHTTEECCSSCSSEEBSSSS--------SSSBCCCTTTTTHHHHHHHHHHHHCCSTTTTHHHHHHHHHHHH
T ss_pred HHHhccCCccCCCcCCCccc--------CCcccccccccHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhh
Confidence 542 23344532221111 1111111111124566666666788765 45577777777666
No 58
>3nnb_A Alginate lyase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Probab=20.21 E-value=65 Score=33.93 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHhhc-cccc
Q psy7540 169 GQGHAISVLSRAYYHSGGNVTYLNTALRALKV-FKLP 204 (578)
Q Consensus 169 aQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~-f~~p 204 (578)
.-..++-.|..||.+| ||++|.+.|.+-|+. |..|
T Consensus 103 ~~~~a~~~LALAW~~T-Gd~~YA~kA~~iL~aWf~~~ 138 (382)
T 3nnb_A 103 DMSKAVTTLGLAYYFS-GDEKYAQKAVDFLNVWFLDA 138 (382)
T ss_dssp HHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHCCC
Confidence 3456778899999999 999999999999984 4433
No 59
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=20.15 E-value=1.9e+02 Score=31.12 Aligned_cols=121 Identities=9% Similarity=0.088 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccc-----cccc---ccCCCCCCCCc------hhhhhhhHHHHHHHHHHHhcCC
Q psy7540 121 SDHMAQFYATAEWLVNHQDPKTGGWPNPV-----RRRI---TAGIGDLKPGW------YSAMGQGHAISVLSRAYYHSGG 186 (578)
Q Consensus 121 ~~~~~~F~~aAdWLl~~qd~~~G~W~~~~-----~~~~---~~~~~~L~~gW------~SaMaQG~aiSvL~RAY~~t~g 186 (578)
+..++..+=.+|||++-+. ++|..-..| +|.. .+.+..-+|-| -++=+-|..+.+|+.|+.++ +
T Consensus 112 ~d~ldeikwg~D~llk~~~-~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R~~y~i~~~~pgsd~a~e~AAAlAaAS~vf-k 189 (466)
T 2xfg_A 112 NHILNNIKWACDYFIKCHP-EKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIF-K 189 (466)
T ss_dssp HHHHHHHHHHHHHHHHTCS-BTTEEEEEESCHHHHHTCCSCGGGCCSCCCEEEEESSSCCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHHhcc-CCCcEEEEeCCCCccccccCCcccCCCCCceeEecCCCCccHHHHHHHHHHHHHHHhc-c
Confidence 5678899999999999854 443221111 1110 00111112322 12445688999999999999 7
Q ss_pred C------hhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH
Q psy7540 187 N------VTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ 255 (578)
Q Consensus 187 D------~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~ 255 (578)
+ +++|++|+++.+.-+.....=+. .....+|..+.. .-+-++-+-..||- .|+|+.+
T Consensus 190 ~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~----~~~~~~Y~s~s~-----~~DEl~WAAawLy~---ATgd~~Y 252 (466)
T 2xfg_A 190 KVDGEYSKECLKHAKELFEFADTTKSDDGY----TAANGFYNSWSG-----FYDELSWAAVWLYL---ATNDSSY 252 (466)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCCCTTC----CTTTTTSCCSSC-----SHHHHHHHHHHHHH---HHCCHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCcCCC----CccccccCCCCC-----CchHHHHHHHHHHH---HhCCHHH
Confidence 6 67899999999877665321110 111233333221 22345566666665 8888754
Done!