RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7540
(578 letters)
>gnl|CDD|219125 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus. This
family represents the C-terminus of D-glucuronyl
C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases
catalyze the conversion of D-glucuronic acid (GlcUA) to
L-iduronic acid (IdceA) units during the biosynthesis of
glycosaminoglycans.
Length = 189
Score = 237 bits (606), Expect = 2e-75
Identities = 102/185 (55%), Positives = 125/185 (67%), Gaps = 4/185 (2%)
Query: 141 KTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKV 200
K GGWP ++ G +L PGWYSAM QG AISVL+RAY +G + YL+ A +AL
Sbjct: 3 KLGGWPYNFTYKLYEGFKELSPGWYSAMAQGQAISVLARAYQLTG-DEKYLDAAKKALNS 61
Query: 201 FKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALS 260
F +P+ KGGV F+DK+PWYEEYPTTP ++LNGFIYSL GLYDL S + EA
Sbjct: 62 FLVPVEKGGVLDTFMDKYPWYEEYPTTPPSYVLNGFIYSLLGLYDL---STATYSDEAKE 118
Query: 261 LYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDK 320
L+D+G+ SLK ML +YDTGS S YDLRH +LG P +AR DYHA H+N LL L +I D
Sbjct: 119 LFDKGLKSLKAMLPLYDTGSWSYYDLRHTTLGNPPNLARWDYHALHINLLLALYSITGDP 178
Query: 321 IISDT 325
I D
Sbjct: 179 IFKDY 183
Score = 215 bits (550), Expect = 4e-67
Identities = 93/164 (56%), Positives = 114/164 (69%), Gaps = 4/164 (2%)
Query: 403 SAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYP 462
SAM QG AISVL+RAY +G + YL+ A +AL F +P+ KGGV F+DK+PWYEEYP
Sbjct: 28 SAMAQGQAISVLARAYQLTG-DEKYLDAAKKALNSFLVPVEKGGVLDTFMDKYPWYEEYP 86
Query: 463 TTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYD 522
TTP ++LNGFIYSL GLYDL S + EA L+D+G+ SLK ML +YDTGS S YD
Sbjct: 87 TTPPSYVLNGFIYSLLGLYDL---STATYSDEAKELFDKGLKSLKAMLPLYDTGSWSYYD 143
Query: 523 LRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRW 566
LRH +LG P +AR DYHA H+N LL L +I D I D +RW
Sbjct: 144 LRHTTLGNPPNLARWDYHALHINLLLALYSITGDPIFKDYAERW 187
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and
related proteins) [Coenzyme transport and metabolism].
Length = 360
Score = 32.3 bits (74), Expect = 0.61
Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 13/89 (14%)
Query: 19 TLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLI 78
LS + + + Q + + +L+ D G L++
Sbjct: 98 ILSTVGSQRIEEVAAAPPFQLYFSKDREFAPNLV-----DRAANAGAK--------QLVL 144
Query: 79 DVQKGVLLQEKKRKIKLVKSKFKVTHIHL 107
V V + ++ + + + H+++
Sbjct: 145 TVDSPVGGERERDAVNGISAPALAIHLNV 173
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 30.0 bits (68), Expect = 4.6
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 234 NGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYD---LRHIS 290
NG+I FG + R+ + +LY + +K +L+ G S +++
Sbjct: 624 NGWI---FGETVEEVDALRADGYDPNALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLI 680
Query: 291 LGIAPK 296
+ PK
Sbjct: 681 DSLLPK 686
Score = 30.0 bits (68), Expect = 4.6
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 471 NGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYD---LRHIS 527
NG+I FG + R+ + +LY + +K +L+ G S +++
Sbjct: 624 NGWI---FGETVEEVDALRADGYDPNALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLI 680
Query: 528 LGIAPK 533
+ PK
Sbjct: 681 DSLLPK 686
>gnl|CDD|107168 PHA02290, PHA02290, hypothetical protein.
Length = 234
Score = 29.4 bits (65), Expect = 4.8
Identities = 5/43 (11%), Positives = 21/43 (48%)
Query: 74 RDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNL 116
+LL D++ + + + + + + +V+H+ + + ++
Sbjct: 145 HELLEDIKDDKKIYDVELEDLRLATGEEVSHLEIVDNKFFESR 187
>gnl|CDD|226489 COG3981, COG3981, Predicted acetyltransferase [General function
prediction only].
Length = 174
Score = 28.5 bits (64), Expect = 6.6
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 22/94 (23%)
Query: 335 PNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVN 394
G + Q + ++LT EP G+++ W VP S +A + Q+V
Sbjct: 31 EAGAAWKADYEQEDFEDWLEDLTRQEP-------GNNLPEGW-VPASTYWAVDEDGQIVG 82
Query: 395 SYVLNF-HTSAMGQGHAISVLSRAYYHSGGNVTY 427
+N H L+ GG++ Y
Sbjct: 83 --FINLRHQ-----------LNDFLLEEGGHIGY 103
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 29.1 bits (65), Expect = 7.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 264 QGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDK 320
+GI SL M ++ D +G ISLG+ A +H THV Q ++ ++ +K
Sbjct: 14 KGILSL-LMESIDDEENGKRV----ISLGMGDPTAYSCFHTTHVAQEAVVDALQSNK 65
Score = 29.1 bits (65), Expect = 7.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 501 QGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDK 557
+GI SL M ++ D +G ISLG+ A +H THV Q ++ ++ +K
Sbjct: 14 KGILSL-LMESIDDEENGKRV----ISLGMGDPTAYSCFHTTHVAQEAVVDALQSNK 65
>gnl|CDD|219970 pfam08689, Med5, Mediator complex subunit Med5. The mediator
complex is required for the expression of nearly all RNA
pol II dependent genes in Saccharomyces cerevisiae.
Deletion of the MED5 gene leads to increased
transcription of nuclear genes encoding components of
the oxidative phosphorylation machinery, and decreased
transcription of mitochondrial genes encoding components
of the same machinery. There is no orthologue from
pombe, and this subunit appears to be fungal specific.
Length = 977
Score = 29.0 bits (65), Expect = 8.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 253 SKQKEALSLYDQGIT-SLKRMLNMYDTGSGSSYDLRHISL 291
+A+S YD S RM +M+D G+ S D+R L
Sbjct: 367 ECIIKAISRYDPNKFDSFSRMFDMFDDGNSSLLDVRQDFL 406
Score = 29.0 bits (65), Expect = 8.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 490 SKQKEALSLYDQGIT-SLKRMLNMYDTGSGSSYDLRHISL 528
+A+S YD S RM +M+D G+ S D+R L
Sbjct: 367 ECIIKAISRYDPNKFDSFSRMFDMFDDGNSSLLDVRQDFL 406
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,619,961
Number of extensions: 2894550
Number of successful extensions: 2156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2152
Number of HSP's successfully gapped: 17
Length of query: 578
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 476
Effective length of database: 6,413,494
Effective search space: 3052823144
Effective search space used: 3052823144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.8 bits)