RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7540
(578 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 79.3 bits (195), Expect = 2e-15
Identities = 109/608 (17%), Positives = 189/608 (31%), Gaps = 182/608 (29%)
Query: 5 SLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIG 64
L L+HGS L L + +S +A S+LQE + + A +
Sbjct: 8 PLTLSHGS---LEHVLLV-PTASFFIA---SQLQEQFNKILPEPTEGFAADDEP------ 54
Query: 65 CSSTWQTLTRDL-----LIDVQKGVLLQEKKRKIKLVKSKFKVTH-----IHLYGSG--S 112
++ + + + L L++ K + + L ++F+ + IH +
Sbjct: 55 -TTPAELVGKFLGYVSSLVEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 113 IDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAM-GQG 171
++ TL + + + Y TA + K + + R + G L + GQG
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKS--NSALFRAVGEGNAQL----VAIFGGQG 164
Query: 172 HAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVF 231
+ Y LR L Y+ Y
Sbjct: 165 N--------------TDDYFEE-LRDL----------------------YQTYHV----- 182
Query: 232 ILNGFIYSLFG-LYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRH-- 288
++ I L +L+ + ++ ++ QG+ ++ L Y L
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAE-----KVFTQGL-NILEWLENPSNTPDKDY-LLSIP 235
Query: 289 ISLGIAPKIA------------RCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWD-- 334
IS P I + + L AT +++ + T W+
Sbjct: 236 ISC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 335 -PNGYYYPTQIAQFGL-SHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNS----GGYAGRQ 388
+ T + G+ + + T P ++LED S++ + VP+ Q
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPP--SILED--SLENNEGVPSPMLSISNLTQEQ 348
Query: 389 YNQLVNSYVLNFHTSAMGQGHAIS--------VLS---RAYYHSGGNVTYLNTALRALKV 437
VN N H A Q IS V+S ++ Y LN LR K
Sbjct: 349 VQDYVNK--TNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYG-------LNLTLRKAKA 398
Query: 438 FKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSP-------RS 490
P G QS+ P+ E F L SP +
Sbjct: 399 ---P--SGLDQSRI----PFSERKLKFSNRF--------------LPVASPFHSHLLVPA 435
Query: 491 KQKEALSLYDQGITSLKRMLNM--YDTGSGSSYDLRHISLGIAPKIARC----------- 537
L ++ + + + YDT GS DLR +S I+ +I C
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGS--DLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 538 -DYHATHV 544
+ ATH+
Sbjct: 494 TQFKATHI 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 6e-09
Identities = 89/636 (13%), Positives = 179/636 (28%), Gaps = 228/636 (35%)
Query: 34 NSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKI 93
+ E E + Y +D+++ C +D+ D+ K +L K +I
Sbjct: 8 DFETGEH-QYQY---KDILSVFEDAFVDNFDC--------KDVQ-DMPKSIL---SKEEI 51
Query: 94 K-LVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATA-----EWLVN-----HQDP-- 140
++ SK V+ L + + +F ++L++ + P
Sbjct: 52 DHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 141 KTGGW---------------PNPVRR-----RITAGIGDLKPGWYSA---MGQGHAISVL 177
T + V R ++ + +L+P + G + +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWV 166
Query: 178 SRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFI 237
AL +K VQ K K W LN
Sbjct: 167 ----------------ALDVCLSYK-------VQCKMDFKIFW------------LN--- 188
Query: 238 YSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKI 297
+ SP + + L Q + + + S S +++ I ++
Sbjct: 189 ---LKNCN----SPETVLEMLQKLLYQ-------IDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 298 ARCDYHATHVNQLLLLATIEKDKIIS--DTG--VPVTTQWDPN--GYYYPTQIAQFGLSH 351
R + N LL+L ++ K + + + +TT+ + L H
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDH 293
Query: 352 YSKNLTEPE----------------PKRTVLED-------GDSIQGD---WVVPNSGGYA 385
+S LT E P+ + + +SI+ W
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--------- 344
Query: 386 GRQYNQLVNSYVLNFHTSAMGQGHAISVLS----RAYYHSGGNVTYLNTALRALKVF--- 438
+ VN L +++VL R + L VF
Sbjct: 345 --DNWKHVNCDKLT-TIIES----SLNVLEPAEYRKMFDR-------------LSVFPPS 384
Query: 439 -KLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFI-YSL---------FGLYDLVTLS 487
+P + L W++ + V ++N YSL + + L
Sbjct: 385 AHIP-------TILLSLI-WFDVIKSDVMV-VVNKLHKYSLVEKQPKESTISIPSI-YLE 434
Query: 488 PRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLG-----IAPKIARCDYHAT 542
+ K + +L+ + +++ Y+ +D + I +H
Sbjct: 435 LKVKLENEYALH-------RSIVDHYNIPKT--FDSDDLIPPYLDQYFYSHIG---HHLK 482
Query: 543 HVNQ---------LLL-LATIEKDKIISDTGQRWAG 568
++ + L +E+ KI D W
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQ-KIRHD-STAWNA 516
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa}
SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Length = 332
Score = 41.2 bits (96), Expect = 6e-04
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 121 SDHMAQFYATAEWLVNHQDPKTGGWP-NPVRRRITAGIGDLKPGWYSAMGQGHAISVLSR 179
+ + A+ ++++Q GGWP N + G G + G + L+
Sbjct: 27 NARTKWSASRADVVLSYQQN-NGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAE 85
Query: 180 AYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYS 239
Y G N Y + +A Y G +F Y ++ T F NG Y+
Sbjct: 86 VYKSGG-NTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHAT----FNDNGMAYA 140
Query: 240 LFGLYDLVT 248
L L
Sbjct: 141 LTVLDFAAN 149
Score = 28.5 bits (63), Expect = 6.2
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 409 HAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVF 468
+ L+ Y G N Y + +A Y G +F Y ++ T F
Sbjct: 78 TEMVFLAEVYKSGG-NTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHAT----F 132
Query: 469 ILNGFIYSLFGLYDLVT 485
NG Y+L L
Sbjct: 133 NDNGMAYALTVLDFAAN 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.003
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 26/54 (48%)
Query: 264 QGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIE 317
Q + L+ L +Y S AP +A + AT+E
Sbjct: 20 QALKKLQASLKLYADDS-------------APALA--------IK-----ATME 47
Score = 37.6 bits (86), Expect = 0.003
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 26/54 (48%)
Query: 501 QGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIE 554
Q + L+ L +Y S AP +A + AT+E
Sbjct: 20 QALKKLQASLKLYADDS-------------APALA--------IK-----ATME 47
Score = 35.3 bits (80), Expect = 0.017
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 89 KKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAE 132
+K+ +K +++ K LY S L + AT E
Sbjct: 18 EKQALKKLQASLK-----LYADDSAPALAIK---------ATME 47
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding,
cytoplasm, disease mutation, hereditary spastic
paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Length = 89
Score = 31.5 bits (71), Expect = 0.16
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 254 KQKEALSLYDQGITSLKRMLNMYDTGSGSSYD 285
++++A+ Y +GI L++ + + TG G +
Sbjct: 34 QKEQAVEWYKKGIEELEKGIAVIVTGQGEQCE 65
Score = 31.5 bits (71), Expect = 0.16
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 491 KQKEALSLYDQGITSLKRMLNMYDTGSGSSYD 522
++++A+ Y +GI L++ + + TG G +
Sbjct: 34 QKEQAVEWYKKGIEELEKGIAVIVTGQGEQCE 65
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
protein structure initiative; 1.60A {Thermobifida fusca}
PDB: 2qvh_A*
Length = 327
Score = 30.1 bits (68), Expect = 1.9
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 130 TAEWLVNHQDPKTGGWPNPVRRRITAGI 157
A W + GWP PVR +
Sbjct: 47 CARWWAACYEAAELGWPAPVRDTVPVNA 74
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains,
tandem, SH3-like fold, beta barrel, alpha- helix, cell
cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Length = 156
Score = 28.7 bits (63), Expect = 3.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 326 GVPVTTQWDPNGYYYPTQIAQ 346
G+ V +W NGY+Y +I +
Sbjct: 12 GLRVVAKWSSNGYFYSGKITR 32
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell
cycle-transcription complex; 1.25A {Homo sapiens} SCOP:
b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A*
1xni_A
Length = 123
Score = 27.8 bits (61), Expect = 4.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 326 GVPVTTQWDPNGYYYPTQI 344
G+ V +W NGY+Y +I
Sbjct: 8 GLRVVAKWSSNGYFYSGKI 26
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 7.6
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 44/120 (36%)
Query: 247 VTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATH 306
V S K+ S + L R+ + S +L K
Sbjct: 122 VNYSSEVKENSVDSDDKAKVPPLIRI--V------SGLELSDT----KQK----GK---- 161
Query: 307 VNQLLLLA---------TIEKDKIISDTGVPVT-------------TQWDPNGYYYPTQI 344
+ L++A + ++I+ + T WD Y Q
Sbjct: 162 --KFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,958,900
Number of extensions: 540377
Number of successful extensions: 1005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 17
Length of query: 578
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 479
Effective length of database: 3,937,614
Effective search space: 1886117106
Effective search space used: 1886117106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)