RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7540
         (578 letters)



>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase
           {Thermus thermophilus [TaxId: 274]}
          Length = 98

 Score = 29.4 bits (66), Expect = 0.34
 Identities = 3/25 (12%), Positives = 13/25 (52%)

Query: 86  LQEKKRKIKLVKSKFKVTHIHLYGS 110
           L+ ++  +  + ++     + ++GS
Sbjct: 9   LRARREAVLSLCARHGAVRVRVFGS 33


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 27.5 bits (60), Expect = 6.0
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 117 TLSTSDHMAQFYATAEWLVNHQD-PKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAIS 175
            +  SD + +         N +  P       P +R++  G           + Q     
Sbjct: 251 EIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYV 310

Query: 176 VLSRAYYHSGGNVT 189
               AY+H   ++ 
Sbjct: 311 SECTAYHHGEQSLA 324


>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides
           thetaiotaomicron [TaxId: 818]}
          Length = 104

 Score = 25.5 bits (56), Expect = 8.2
 Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 85  LLQEKKRKIKLVKSKFKVTHIHLYGSG-SIDNLTLSTSDHMAQFYATAEWLVNH 137
           + Q+    +     + K   ++ YG+G + +   +                 N 
Sbjct: 39  IQQKLTASLLPQLPEGKFNAVYFYGAGCTPEKAPVLRRAIADSLPVIGNIKANS 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,192,044
Number of extensions: 102773
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 8
Length of query: 578
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 488
Effective length of database: 1,171,896
Effective search space: 571885248
Effective search space used: 571885248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)