BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7542
(762 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCE-NVKIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E + + +TGA+GF+G+ L+ ++LR + + ++ L+R + ++++R RLE+ F S E L
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ + +A +++ + GD + PDLG+ + L+ET+ ++ AA V Y + +
Sbjct: 132 RHFKELAA--DRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHELF-G 188
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA 206
N GT +++ ++ L+ F YVSTA
Sbjct: 189 PNVAGTAELIRIA-LTTKLKPFTYVSTA 215
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 23/156 (14%)
Query: 55 ISATLEHK---NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
+ +L H+ N +TGA+GF+G L+E + +IY +R EEI
Sbjct: 141 LEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADN--------EEIAW 190
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD 171
L L SE + +++ N +V V D D +L E + + H A R D
Sbjct: 191 YKLMTNLNDYFSEETV--EMMLSNIEVIVGDF--ECMDDVVLPENMDTIIHAGA--RTDH 244
Query: 172 YMQTYVF--LNTRGTRDMLNLSKQMIHLQLFVYVST 205
+ F +N +GT D++ L++Q H +YVST
Sbjct: 245 FGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVST 278
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 39/182 (21%)
Query: 45 PKKFKHLPDRISA----------------TLEHK---NIFITGASGFVGKVLLEKILRTC 85
P+ LPD +S +L H+ N +TGA+GF+G L+E +
Sbjct: 34 PQSLVALPDNLSELQKIVXSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYS 93
Query: 86 ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGI 145
+IY +R EEI L L SE + + I +V V D
Sbjct: 94 H--RIYCFIRADN--------EEIAWYKLXTNLNDYFSEETVEXXLSNI--EVIVGDF-- 139
Query: 146 SAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF--LNTRGTRDMLNLSKQMIHLQLFVYV 203
D +L E + H A R D + F +N +GT D++ L++Q H +YV
Sbjct: 140 ECXDDVVLPENXDTIIHAGA--RTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYV 195
Query: 204 ST 205
ST
Sbjct: 196 ST 197
>pdb|4AZ9|A Chain A, Crystal Structure Of Phox Homology Domain Of Human Sorting
Nexin 24
pdb|4AZ9|B Chain B, Crystal Structure Of Phox Homology Domain Of Human Sorting
Nexin 24
Length = 129
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 629 YLDFGFFQNKTK--FSTPSFPPKKIRSNQPKVLDERRHLLEIYLK 671
Y +F K K TP P K +R+ PKVL++RR LE YL+
Sbjct: 61 YSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQ 105
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
+++K++FI GASG GKVLL++IL K+ ++ R K EE EA
Sbjct: 22 MQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLT------FEE-------EAY 68
Query: 119 KKEQSESAIFEKV 131
K E FEK+
Sbjct: 69 KNVNQEVVDFEKL 81
>pdb|3LUI|A Chain A, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|B Chain B, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|C Chain C, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
Length = 115
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 644 PSFPPKKIRSNQPKVLDERRHLLEIYLK 671
P+FPPKK+ S P +++RR LE Y++
Sbjct: 60 PAFPPKKLFSLTPAEVEQRREQLEKYMQ 87
>pdb|3FOG|A Chain A, Crystal Structure Of The Px Domain Of Sorting Nexin-17
(Snx17)
Length = 115
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 644 PSFPPKKIRSNQPKVLDERRHLLEIYLK 671
P+FPPKK+ S P +++RR LE Y++
Sbjct: 57 PAFPPKKLFSLTPAEVEQRREQLEKYMQ 84
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKI--YILLRPKKNKNSRERLEEIFQSPLYEALKK 120
NI +TG +GF+G + L++ E KI + L N N+ + +++ P Y +K
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQD---HPNYYFVKG 82
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
E + E VI DV V + +AE H+ I + F D N
Sbjct: 83 EIQNGELLEHVIK-ERDVQVI-VNFAAES--------HVDRSIENPIPFYD-------TN 125
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTAYCH---PKEKVLEEKTYPPPVSPHN 228
GT +L L K+ H++L V VST + K E+T P SP++
Sbjct: 126 VIGTVTLLELVKKYPHIKL-VQVSTDEVYGSLGKTGRFTEETPLAPNSPYS 175
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97
+++K++FI GASG G+VLL++IL K+ ++ R K
Sbjct: 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK 54
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ I I G +G++GK ++ L IY + S +L E F+S ++ E
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAAT 166
E EK++ + V D+ ISA M+S IHI+ I A
Sbjct: 65 MEEH---EKMVSVLKQV---DIVISALPFPMISSQIHIINAIKAA 103
>pdb|2V14|A Chain A, Kinesin 16b Phox-Homology Domain (Kif16b)
Length = 134
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 646 FPPKKIRSNQ-PKVLDERRHLLEIYLKEMF 674
FPPKK+ N+ +V+ ERR LE YL++ F
Sbjct: 65 FPPKKLFGNKDERVIAERRSHLEKYLRDFF 94
>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 167 VRFDDYMQTYVFLNTRGTRDML-NLSKQMIHLQLFVYVSTAYCH 209
V DY+ T +FL+ R R ML +SK L LF Y +A H
Sbjct: 513 VNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVH 556
>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
Length = 702
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 167 VRFDDYMQTYVFLNTRGTRDML-NLSKQMIHLQLFVYVSTAYCH 209
V DY+ T +FL+ R R ML +SK L LF Y +A H
Sbjct: 512 VNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVH 555
>pdb|3O6O|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of
An The Inhibitor Biib021
pdb|3O6O|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of
An The Inhibitor Biib021
Length = 214
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 540 VIHVRMFQQHYIVEKRYSELLSWHSEGFGLGI 571
V+H++ QQ Y+ E+R +L+ HSE G I
Sbjct: 173 VLHLKEDQQEYLEERRLKDLIKKHSEFIGYDI 204
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95
L+++ I ITG +G GK + K+L T KI + R
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR 55
>pdb|3OPD|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of
A Benzamide Derivative
pdb|3OPD|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of
A Benzamide Derivative
pdb|3OPD|C Chain C, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of
A Benzamide Derivative
pdb|3OMU|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of
A Thienopyrimidine Derivative
pdb|3OMU|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of
A Thienopyrimidine Derivative
Length = 231
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 540 VIHVRMFQQHYIVEKRYSELLSWHSEGFGLGI 571
V+H++ QQ Y+ E+R +L+ HSE G I
Sbjct: 190 VLHLKEDQQEYLEERRLKDLIKKHSEFIGYDI 221
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 27/135 (20%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
KNI +TG +GF+G + + +V + +L + L A K
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK------------------LTYAGNKA 46
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQT---YVF 178
E+ + ++V + GD+A AE L+ + H AA D+ + ++
Sbjct: 47 NLEAILGDRVELVVGDIA------DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIH 100
Query: 179 LNTRGTRDMLNLSKQ 193
N GT +L +++
Sbjct: 101 TNFIGTYTLLEAARK 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,901,333
Number of Sequences: 62578
Number of extensions: 1041183
Number of successful extensions: 2275
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2263
Number of HSP's gapped (non-prelim): 22
length of query: 762
length of database: 14,973,337
effective HSP length: 106
effective length of query: 656
effective length of database: 8,340,069
effective search space: 5471085264
effective search space used: 5471085264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)